BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12967
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 7/141 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+ ERKP++ELQ KT+AID+S WI DS T+ +HS+Q MYLRNL+FRT+
Sbjct: 1 MGVKDLWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQPKMYLRNLYFRTA 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR-ARNLFFRTSYLLLL 174
+LL+ G+ P+FVLEGKAP LKH TI KR RS R + S+ R F R +L
Sbjct: 61 FLLMQGISPVFVLEGKAPTLKHKTIAKRNDV--RSGFREKKTASKGGRTQFNR----ILN 114
Query: 175 GVKPIFVLEGKAPVLKHDTIE 195
K + L G A V H E
Sbjct: 115 ECKEMLQLMGLACVQGHGEAE 135
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 7/141 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+ ERKP++ELQ KT+AID+S WI DS T+ +HS+Q MYLRNL+FRT+
Sbjct: 1 MGVKDLWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQPKMYLRNLYFRTA 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR-ARNLFFRTSYLLLL 174
+LL+ G+ P+FVLEGKAP LKH TI KR RS R + S+ R F R +L
Sbjct: 61 FLLMQGISPVFVLEGKAPTLKHKTIAKRNDV--RSGFREKKTASKGGRTQFNR----ILN 114
Query: 175 GVKPIFVLEGKAPVLKHDTIE 195
K + L G A V H E
Sbjct: 115 ECKEMLQLMGLACVQGHGEAE 135
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/112 (57%), Positives = 80/112 (71%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+CERKP++ELQ KTIAIDLS W+ DS TI +++ Q MYLRNL+FRT+
Sbjct: 1 MGVKDLWNILSPLCERKPLYELQGKTIAIDLSGWVVDSQTIVDNAVQPKMYLRNLYFRTA 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
+LL+ G+ P+FVLEGKAP LKH TI +R + R A R F R
Sbjct: 61 FLLMQGISPVFVLEGKAPTLKHKTIARRNDVRSGFQERKEAAKKGGRTQFNR 112
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+CERKP++ELQ KTIAIDLS W+ DS TI +H Q MYLRNL+FRT
Sbjct: 1 MGVKDLWNILSPLCERKPLFELQGKTIAIDLSCWVVDSQTIVDHYVQPKMYLRNLYFRTI 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRAR 162
+LL+ G+ P+FVLEGKAP LK++TI KR + G +++Q R +
Sbjct: 61 FLLMQGILPVFVLEGKAPALKYNTIAKRNDIRSGFQEKKSIQKKGRTQ 108
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+C+RKP++ELQ KTIAIDLS W+ DS TI +++ Q MYLRNL+FRT+
Sbjct: 1 MGVKDLWNILSPLCDRKPLYELQGKTIAIDLSGWVVDSQTIVDNAVQSKMYLRNLYFRTA 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQAGSRAR 162
+LL+ G+ P+FVLEGKAP +KH TI +R G + + G R++
Sbjct: 61 FLLMHGISPVFVLEGKAPDIKHKTIIRRHNVRHGFCERKTSKKGGRSQ 108
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 9/107 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+CERKP++ELQ KT+AID+S W+ DS T+ ++ +Q MYLRNL+FRT+
Sbjct: 1 MGVKDLWNILSPLCERKPMFELQGKTVAIDISGWVVDSQTVTDNHAQPKMYLRNLYFRTA 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+LL+ ++P+FVLEGKAP LKH+ I KR N++ G R R
Sbjct: 61 FLLMHEIQPVFVLEGKAPDLKHNAIAKRN---------NIRNGFRER 98
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW IL+P+ ERKP++ELQ K IAIDLS W+ DS ++ ++ +Q M+LRNLFFRTS
Sbjct: 1 MGVKDLWNILSPLSERKPLFELQGKAIAIDLSCWVVDSQSVTDNIAQPKMHLRNLFFRTS 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQAGSRAR 162
Y LL + P+FVLEG AP LKH+TI KR GR + + R+R
Sbjct: 61 YFLLHDIFPVFVLEGAAPTLKHNTIAKRNDIRHGREIKKTNKKAGRSR 108
>gi|270011949|gb|EFA08397.1| hypothetical protein TcasGA2_TC006044 [Tribolium castaneum]
Length = 591
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 6/139 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+KDLW +L P ERKP++ELQ KT+AIDLS W+C+S + E++ Q MYLRNL+FRT
Sbjct: 1 MGIKDLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTEYTVQPRMYLRNLYFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRT-----SY 170
YLLL+ V +FVLEG+AP LK+ TI R Q + A A ++ R+ F T
Sbjct: 61 YLLLMDVNVVFVLEGRAPELKYKTIAARNALQFKGAKPKNGAKTKDRSRFNHTLKRCEEM 120
Query: 171 LLLLGVKPIFVLEGKAPVL 189
L LLG+ + EG+A L
Sbjct: 121 LSLLGLACV-TGEGEAEAL 138
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 123 KPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVL 182
KP++ L+GK + Q VQ RNL+FRT YLLL+ V +FVL
Sbjct: 17 KPLYELQGKTVAIDLSCWVCESQ---NVTEYTVQPRMYLRNLYFRTCYLLLMDVNVVFVL 73
Query: 183 EGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
EG+AP LK+ TI R Q + A A ++ R
Sbjct: 74 EGRAPELKYKTIAARNALQFKGAKPKNGAKTKDR 107
>gi|189239788|ref|XP_969346.2| PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium
castaneum]
Length = 565
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 6/139 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+KDLW +L P ERKP++ELQ KT+AIDLS W+C+S + E++ Q MYLRNL+FRT
Sbjct: 1 MGIKDLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTEYTVQPRMYLRNLYFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRT-----SY 170
YLLL+ V +FVLEG+AP LK+ TI R Q + A A ++ R+ F T
Sbjct: 61 YLLLMDVNVVFVLEGRAPELKYKTIAARNALQFKGAKPKNGAKTKDRSRFNHTLKRCEEM 120
Query: 171 LLLLGVKPIFVLEGKAPVL 189
L LLG+ + EG+A L
Sbjct: 121 LSLLGLACV-TGEGEAEAL 138
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 123 KPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVL 182
KP++ L+GK + Q VQ RNL+FRT YLLL+ V +FVL
Sbjct: 17 KPLYELQGKTVAIDLSCWVCESQ---NVTEYTVQPRMYLRNLYFRTCYLLLMDVNVVFVL 73
Query: 183 EGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
EG+AP LK+ TI R Q + A A ++ R
Sbjct: 74 EGRAPELKYKTIAARNALQFKGAKPKNGAKTKDR 107
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 69/88 (78%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP+ E+ P+WEL K IAIDLS W+CDS + + SQKNMYLRNLFFRT
Sbjct: 1 MGVKNLWSLLTPVAEKMPLWELHGKAIAIDLSGWVCDSENLNHNISQKNMYLRNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
LLL+G PIFV +G+ P+LK+ TIEKR
Sbjct: 61 NLLLIGAIPIFVFDGEPPLLKYSTIEKR 88
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 5/98 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVKDLW +L+P+CE+KP++ELQ KTIAIDLS WI DS TI ++ Q MYLRNL+F
Sbjct: 1 MGVKDLWNVLSPLCEKKPLYELQGKTIAIDLSGWIVDSQTIVDNMVQPRMYLRNLYF--- 57
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
L+ G+ P+FVLEGK P+LKH TI +R + R R
Sbjct: 58 --LVHGIFPVFVLEGKPPILKHKTIARRNDVRSRFQER 93
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MGVKDLW +L+P+CE+KP++ELQ KTIAIDLS WI DS TI ++ Q MYLR + +
Sbjct: 1 MGVKDLWNVLSPLCEKKPLYELQGKTIAIDLSGWIVDSQTIVDNMVQPRMYLRNLYFL-- 58
Query: 61 LWGIL-TPICERKPIWELQDKTIA 83
+ GI + E KP L+ KTIA
Sbjct: 59 VHGIFPVFVLEGKPPI-LKHKTIA 81
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV-QAGSRARL 217
++ R Y L+ G+ P+FVLEGK P+LKH TI +R + R R + G R +
Sbjct: 50 MYLRNLYFLVHGIFPVFVLEGKPPILKHKTIARRNDVRSRFQERKTAKKGGRTQF 104
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 68/96 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+KDLW +LTP CE+KP++EL K +AIDLS W+C+S + ++ YLRNLFFRT
Sbjct: 1 MGIKDLWNLLTPYCEKKPLFELNRKVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
YLL G+ P+FVLEG AP LK+ I +R Q Q R A
Sbjct: 61 YLLTTGIVPVFVLEGAAPPLKYGVIIQRNQIQFRGA 96
>gi|5679043|gb|AAD46833.1|AF160893_1 GM10765p [Drosophila melanogaster]
gi|28460669|dbj|BAC57447.1| xpg like endonuclease [Drosophila melanogaster]
Length = 726
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|24658219|ref|NP_647943.2| XPG-like endonuclease [Drosophila melanogaster]
gi|74870583|sp|Q9VRJ0.1|GEN_DROME RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease; Short=DmGEN
gi|7295491|gb|AAF50805.1| XPG-like endonuclease [Drosophila melanogaster]
gi|21711755|gb|AAM75068.1| RE33588p [Drosophila melanogaster]
gi|220949066|gb|ACL87076.1| Gen-PA [synthetic construct]
Length = 726
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|195491935|ref|XP_002093778.1| GE20569 [Drosophila yakuba]
gi|194179879|gb|EDW93490.1| GE20569 [Drosophila yakuba]
Length = 727
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|194866945|ref|XP_001971974.1| GG14140 [Drosophila erecta]
gi|190653757|gb|EDV51000.1| GG14140 [Drosophila erecta]
Length = 726
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|195587930|ref|XP_002083714.1| GD13208 [Drosophila simulans]
gi|194195723|gb|EDX09299.1| GD13208 [Drosophila simulans]
Length = 726
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|195337621|ref|XP_002035427.1| GM13928 [Drosophila sechellia]
gi|194128520|gb|EDW50563.1| GM13928 [Drosophila sechellia]
Length = 726
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+KDLW +LTP E+K ++ L + +AIDLS W+C+S + ++ YLRNLFFRT
Sbjct: 1 MGIKDLWNLLTPHSEKKSLFHLNGQVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRTY 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YLL +G+ P+FVLEG AP LK+ I KR Q Q R
Sbjct: 61 YLLQIGIIPVFVLEGSAPPLKYGVIIKRNQTQFR 94
>gi|194750279|ref|XP_001957555.1| GF10471 [Drosophila ananassae]
gi|190624837|gb|EDV40361.1| GF10471 [Drosophila ananassae]
Length = 734
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTVLTPHCERKPISELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA-GRNVQAGSRARN 163
YL+ V P+FVLEG AP LK I KR + Q R + AGS+ ++
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKEATAGSQTQS 109
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW +LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWTVLTPHCERKPISELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA-GRNVQAGS 213
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R + AGS
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKEATAGS 105
Query: 214 RAR 216
+ +
Sbjct: 106 QTQ 108
>gi|357629869|gb|EHJ78381.1| hypothetical protein KGM_07415 [Danaus plexippus]
Length = 122
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+K LW +L P E+ + E+ +T+AIDL+ W+CDS + E+ Q +YLRNLFFRT
Sbjct: 1 MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTEYYIQPKLYLRNLFFRTL 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
YL+L V PIFVLEG AP LK D + R Q + A
Sbjct: 61 YLVLSDVNPIFVLEGDAPELKRDVMAARNALQFKGAA 97
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MG+K LW +L P E+ + E+ +T+AIDL+ W+CDS + E+ Q +YLR + +
Sbjct: 1 MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTEYYIQPKLYLRNLF-FRT 59
Query: 61 LWGILTPICERKPIWELQ 78
L+ +L+ + PI+ L+
Sbjct: 60 LYLVLSDV---NPIFVLE 74
>gi|195127377|ref|XP_002008145.1| GI11983 [Drosophila mojavensis]
gi|193919754|gb|EDW18621.1| GI11983 [Drosophila mojavensis]
Length = 751
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW ILTP +RKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWSILTPYADRKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
YL+ V P+FVLEG AP LK I KR + Q R A
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGA 96
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW ILTP +RKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWSILTPYADRKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R A
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGA 96
>gi|195376315|ref|XP_002046942.1| GJ12207 [Drosophila virilis]
gi|194154100|gb|EDW69284.1| GJ12207 [Drosophila virilis]
Length = 747
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW ILTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWSILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW ILTP ERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWSILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|195014132|ref|XP_001983964.1| GH15274 [Drosophila grimshawi]
gi|193897446|gb|EDV96312.1| GH15274 [Drosophila grimshawi]
Length = 749
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW ILTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW ILTP ERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWTILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>gi|357608737|gb|EHJ66129.1| hypothetical protein KGM_15891 [Danaus plexippus]
Length = 722
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+K LW +L P E+ + E+ +T+AIDL+ W+CDS + ++ Q +YLRNLFFRT
Sbjct: 1 MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTDYYIQPKLYLRNLFFRTL 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
YL+L V PIFVLEG AP LK D + R Q + A
Sbjct: 61 YLVLSDVNPIFVLEGDAPELKRDVMAARNALQFKGAA 97
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MG+K LW +L P E+ + E+ +T+AIDL+ W+CDS + ++ Q +YLR + +
Sbjct: 1 MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTDYYIQPKLYLRNLF-FRT 59
Query: 61 LWGILTPICERKPIWELQ 78
L+ +L+ + PI+ L+
Sbjct: 60 LYLVLSDV---NPIFVLE 74
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + + +L+NLFFRT
Sbjct: 1 MGVKELWSVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDFFIHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
YL+ V P+FVLEG AP LK I KR + Q R S N
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKDSGSSNKEN 108
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE---HSSQ--KNMYLRAI 55
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + + H KN++ R
Sbjct: 1 MGVKELWSVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDFFIHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
>gi|125980514|ref|XP_001354281.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
gi|121993075|sp|Q29FC1.1|GEN_DROPS RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease
gi|54642587|gb|EAL31334.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
Length = 754
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
>gi|195167797|ref|XP_002024719.1| GL22468 [Drosophila persimilis]
gi|194108124|gb|EDW30167.1| GL22468 [Drosophila persimilis]
Length = 754
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKGQVITKRNELQFR 94
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVITKRNELQFR 94
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%)
Query: 70 ERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLE 129
ERKP++EL +K +AIDLS W+C+S + ++ YLRNLFFRT YLL G+ P+FVLE
Sbjct: 2 ERKPLFELSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRTCYLLQTGITPVFVLE 61
Query: 130 GKAPVLKHDTIEKRQQAQGRSA 151
G AP LK+ I KR Q Q R A
Sbjct: 62 GTAPPLKYGVIVKRNQMQFRGA 83
>gi|297668153|ref|XP_002812316.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Pongo abelii]
Length = 912
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLCNLAGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|426334793|ref|XP_004028921.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426334795|ref|XP_004028922.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 908
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHMPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|290457644|sp|Q17RS7.2|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
Length = 908
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q++ S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKS 100
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q++ S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHFKSV 113
>gi|397513474|ref|XP_003827038.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Pan paniscus]
gi|397513476|ref|XP_003827039.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Pan paniscus]
gi|397513478|ref|XP_003827040.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan paniscus]
Length = 908
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
2 [synthetic construct]
Length = 908
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
Length = 908
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
Length = 908
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
troglodytes]
gi|410034836|ref|XP_003949810.1| PREDICTED: flap endonuclease GEN homolog 1 [Pan troglodytes]
gi|410218742|gb|JAA06590.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410255580|gb|JAA15757.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410287868|gb|JAA22534.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410352247|gb|JAA42727.1| Gen homolog 1, endonuclease [Pan troglodytes]
Length = 908
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRSLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|383418083|gb|AFH32255.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
gi|383418085|gb|AFH32256.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
Length = 907
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLSNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
mulatta]
gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
mulatta]
Length = 907
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|355751124|gb|EHH55379.1| hypothetical protein EGM_04579 [Macaca fascicularis]
Length = 907
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|355565476|gb|EHH21905.1| hypothetical protein EGK_05073 [Macaca mulatta]
Length = 907
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|402890148|ref|XP_003908353.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Papio anubis]
gi|402890150|ref|XP_003908354.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Papio anubis]
gi|402890152|ref|XP_003908355.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Papio anubis]
Length = 906
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
Length = 908
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P+LK D I KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSV 113
>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
gi|166221585|sp|Q8BMI4.2|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
Length = 908
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P+LK D I KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSV 113
>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
leucogenys]
gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
leucogenys]
Length = 907
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ ++ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQSVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
Length = 908
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P+LK D I KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSV 113
>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
Length = 908
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTIKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 70 ERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLR----NLFFRTSYLLLLGVKPI 125
ERKP++EL +K +AIDLS W+C+S + ++ YLR NLFFRT YLL G+ P+
Sbjct: 2 ERKPLFELSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRYVVKNLFFRTCYLLQTGITPV 61
Query: 126 FVLEGKAPVLKHDTIEKRQQAQGRSA 151
FVLEG AP LK+ I KR Q Q R A
Sbjct: 62 FVLEGAAPPLKYGVIVKRNQLQFRGA 87
>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
Length = 904
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLGGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV--QAGSRARNLFFRTSYLL 172
SYL+ + VK +FV+EG+ P LK D I KR Q + S+G+ + Q G L R L
Sbjct: 61 SYLMQMDVKLVFVMEGEPPKLKADVISKRNQIRYGSSGKTLSQQTGRSHFKLVLRECLDL 120
Query: 173 L--LGV 176
L LG+
Sbjct: 121 LDCLGI 126
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV-QAGSRARLK 218
RNLFFR SYL+ + VK +FV+EG+ P LK D I KR Q + S+G+ + Q R+ K
Sbjct: 54 RNLFFRISYLMQMDVKLVFVMEGEPPKLKADVISKRNQIRYGSSGKTLSQQTGRSHFK 111
>gi|403288138|ref|XP_003935270.1| PREDICTED: flap endonuclease GEN homolog 1 [Saimiri boliviensis
boliviensis]
Length = 909
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L +T+A+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGQTLAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKS 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSV 113
>gi|344280345|ref|XP_003411944.1| PREDICTED: flap endonuclease GEN homolog 1 [Loxodonta africana]
Length = 739
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ E + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKEHTHVHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
S+L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SFLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGK 99
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR S+L L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISFLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQKTGRSHFKSV 113
>gi|440909937|gb|ELR59789.1| Flap endonuclease GEN-like protein 1, partial [Bos grunniens mutus]
Length = 906
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGK 99
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWSQKTGRSHFKSV 113
>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
gi|296482355|tpg|DAA24470.1| TPA: flap structure-specific endonuclease-like [Bos taurus]
Length = 906
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGK 99
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWSQKTGRSHFKSV 113
>gi|426223166|ref|XP_004005748.1| PREDICTED: flap endonuclease GEN homolog 1 [Ovis aries]
Length = 931
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 21 MGVNDLWQILEPVKQHIHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 80
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 81 SYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGK 119
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 74 RNLFFRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWSQKTGRSHFKSV 133
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM-YLRNLFFRT 114
MGV +LW I+ P+ E P++ L KT+A+DLS W+C++ + + N +LRNLFFR
Sbjct: 1 MGVHELWSIIEPVRESVPLYSLSGKTLAVDLSLWVCEAQHVQAMMGRVNKPHLRNLFFRV 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
S L L+G+K +FV+EG+AP +K +T+ KR A+ + S R F
Sbjct: 61 SSLTLMGIKLVFVMEGEAPKIKAETMSKRTLARYGGFKKTSSTTSTGRGRF 111
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ--GRSAGRNVQAGSRARLKG 219
RNLFFR S L L+G+K +FV+EG+AP +K +T+ KR A+ G + + R R K
Sbjct: 54 RNLFFRVSSLTLMGIKLVFVMEGEAPKIKAETMSKRTLARYGGFKKTSSTTSTGRGRFKA 113
Query: 220 L 220
+
Sbjct: 114 V 114
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL+ + VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPSGK 99
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE-HSSQKNMYLRNLFFRT 114
MGV +LW +L P+ + + L+ +T+A+DLS W+C++ + + YLRNLFFR
Sbjct: 1 MGVTNLWQVLEPVQAHQTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA---QGRSAGRNVQAGSRARNLFFRTSYL 171
S+LL LGV +FV+EG+AP LK + KRQ+ Q ++ G Q G R N +
Sbjct: 61 SHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGGRRNFNACLKECCE 120
Query: 172 LL--LGV 176
+L LGV
Sbjct: 121 MLDYLGV 127
>gi|149728133|ref|XP_001503466.1| PREDICTED: flap endonuclease GEN homolog 1 [Equus caballus]
Length = 908
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLHGLAGKTIAVDLSLWVCEAQTVKKMIGTVLKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGK 99
>gi|73980577|ref|XP_540093.2| PREDICTED: flap endonuclease GEN homolog 1 [Canis lupus familiaris]
Length = 908
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I +R Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPKLKADVISRRNQIRYGPSGK 99
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I +R Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPKLKADVISRRNQIRYGPSGKTWSQKAGRSHFKSV 113
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL+ + VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPSGK 99
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + L KTIA+DLS W+C++ ++ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKHPVHLHSLVGKTIAVDLSLWVCEAQSVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
SYL L+ VK +FV+EG+ P LK D I KR Q
Sbjct: 61 SYLTLMDVKLVFVMEGEPPELKADVINKRNQ 91
>gi|432096863|gb|ELK27441.1| Flap endonuclease GEN like protein 1 [Myotis davidii]
Length = 903
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C+S T+ + + +LRNLFFR
Sbjct: 1 MGVSDLWQILEPVKQHIHLSSLGGKTIAVDLSLWVCESQTVKKMIGTVTKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
S+L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SHLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGK 99
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR S+L L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISHLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGKTWSQKTGRSHFKSV 113
>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
melanoleuca]
Length = 907
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I +R Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGK 99
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I +R Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGKTWSQKTGRSHFKSV 113
>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
Length = 906
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I +R Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGK 99
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I +R Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGKTWSQKTGRSHFKSV 113
>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
Length = 909
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L + +A+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLHNLGGQILAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q + +G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGFSGKS 100
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + +G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQTRYGFSGKSWSQKTGRSHFKSV 113
>gi|395828598|ref|XP_003787457.1| PREDICTED: flap endonuclease GEN homolog 1 [Otolemur garnettii]
Length = 884
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLHNLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL+ + VK +FV+EG+ P LK D ++KR + + +G+
Sbjct: 61 SYLMQMNVKLVFVMEGEPPKLKADVMKKRNEIRYGPSGK 99
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL+ + VK +FV+EG+ P LK D ++KR + + +G+ Q R+ K L
Sbjct: 54 RNLFFRISYLMQMNVKLVFVMEGEPPKLKADVMKKRNEIRYGPSGKTWSQKTGRSHFKSL 113
>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
carolinensis]
Length = 631
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS-QKNMYLRNLFFRT 114
MGV LW IL P+ E P+ L+ KT+A+DLS W+C++ + + K +LRNLFFR
Sbjct: 1 MGVTSLWQILEPVKEHVPLSSLKGKTLAVDLSLWVCEAQMVKKMMGIVKKPHLRNLFFRL 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
S L L+G+ +FV+EG AP LK +T+EKR++
Sbjct: 61 SSLTLMGIHLVFVMEGDAPKLKANTMEKRKE 91
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D + KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKS 100
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D + KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKSRSQKTGRSHFKSV 113
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI-AEHSSQKNMYLRNLFFRT 114
MGV DLW I+ P+ E ++ L KT+A+DLS W+C++ + A +LRNLFFR
Sbjct: 1 MGVHDLWSIVEPVRESVSLYSLSGKTLAVDLSLWVCEAQHVQAMMGRVTKPHLRNLFFRV 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
S L L+G+K +FV+EG AP LK +T+ KR +A+
Sbjct: 61 SSLSLMGIKLVFVMEGTAPKLKAETMSKRTKAR 93
>gi|444731649|gb|ELW71998.1| Flap endonuclease GEN like protein 1 [Tupaia chinensis]
Length = 793
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L K+IA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIDLHNLVGKSIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL + VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGK 99
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q + +G+ Q R++ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQKRGRSQFKSV 113
>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
gallopavo]
Length = 897
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV +LW IL P+ + + L+ KT+A+DLS W+C++ T+ + +LRNLFFR
Sbjct: 1 MGVTNLWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVTKPHLRNLFFRY 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR-ARNLF 165
S+ +G+K +FV+EG+AP LK DT+ KR + R N +R R+LF
Sbjct: 61 SFFTSMGIKLVFVMEGEAPKLKADTMSKRNEM--RYGASNKHGAARTGRSLF 110
>gi|187608436|ref|NP_001120251.1| Gen endonuclease homolog 1 [Xenopus (Silurana) tropicalis]
gi|169641850|gb|AAI60467.1| LOC100145302 protein [Xenopus (Silurana) tropicalis]
Length = 219
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KT+A+DLS W+C++ + + +LRNLFFR
Sbjct: 1 MGVTDLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMVKQMIGVVHKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARNLFFRT 168
S L LLGVK +FV EG+AP +K +T+ KR + + G SA A +A +F++
Sbjct: 61 SSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSAS---AAPPKAGRSYFKS 112
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR S L LLGVK +FV EG+AP +K +T+ KR + + G SA R+ K +
Sbjct: 54 RNLFFRISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPPKAGRSYFKSV 113
>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1 [Sus scrofa]
Length = 906
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW +L P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
S L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGK 99
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
RNLFFR S L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 54 RNLFFRISCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGK 99
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC-DSSTIAEHSSQKNMYLRNLFFRT 114
MGV+ LW IL PI E +P+ EL +T+A+DLS W C D S S +YLRNLFFRT
Sbjct: 1 MGVRGLWSILAPIQEHRPLAELGGETVAVDLSIWTCGDVSVKHNMSVSTKLYLRNLFFRT 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
LL P+ VL+G AP LK TI R Q R+
Sbjct: 61 LNLLRQNTLPVVVLDGVAPSLKATTIANRLCTQRRN 96
>gi|348574836|ref|XP_003473196.1| PREDICTED: flap endonuclease GEN homolog 1-like [Cavia porcellus]
Length = 906
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P + + L KTIA+DLS W+C++ ++ + + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPAKQHIHLQNLSGKTIAVDLSLWVCEAQSVRKMMGTVRKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
SYL+ + +K +FV+EG+ P LK D + KR Q
Sbjct: 61 SYLMQMDIKLVFVMEGEPPKLKADVMNKRNQ 91
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL+ + +K +FV+EG+ P LK D + KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLMQMDIKLVFVMEGEPPKLKADVMNKRNQIRYGLSGKTWSQKSGRSHFKSV 113
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 10/140 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK LW +L P+ + P+ +L+ +TIA+DLS+WIC+S IA ++ K +LRNLF+R
Sbjct: 1 MGVKTLWVVLEPVKDPTPLEDLKGQTIAVDLSSWICES--IAAVNAFKP-HLRNLFYRVV 57
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG-----SRARNLFFRTSY 170
L L ++P+FV++G P LK + + KR QG S ++ + +R + L +
Sbjct: 58 NLSRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGEKKPGMQRTRLKTLQYECCK 117
Query: 171 LL-LLGVKPIFVLEGKAPVL 189
LL +LGV P G+A +
Sbjct: 118 LLDVLGV-PYIQATGEAEAM 136
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEHSSQKNMYLRAI 55
MGVK LW +L P+ + P+ +L+ +TIA+DLS+WIC+S + A +N++ R +
Sbjct: 1 MGVKTLWVVLEPVKDPTPLEDLKGQTIAVDLSSWICESIAAVNAFKPHLRNLFYRVV 57
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV +LW IL P+ + + L+ KT+A+DLS W+C++ T+ + +LRNLFFR
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVTKPHLRNLFFRY 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRT 168
S+ +G+K +FV+EG+AP LK DT+ KR + R N +R F++
Sbjct: 61 SFFTSMGIKLVFVMEGEAPKLKADTMSKRNEI--RYGASNKHGVARTGRSSFKS 112
>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
intestinalis]
Length = 579
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA--EHSSQKNMYLRNLFFR 113
MGV+ LW IL + K + +L+D+T A+DL+ WIC++ ++A +H+ K YLRNLFFR
Sbjct: 1 MGVQGLWDILQEVKTTKKLCDLKDRTYAVDLATWICEAESVAALKHAIAK-PYLRNLFFR 59
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQAGSRAR-NLFFRTSYL 171
G + IFV +GKAP LK T+ R Q G NV GSR+R N F
Sbjct: 60 VITFTRNGTRLIFVTDGKAPELKWKTMAHRMDVRQEVQKGTNVSHGSRSRLNARFNECCQ 119
Query: 172 LL--LGVKPIFVLEGKA 186
LL LG+ P EG+A
Sbjct: 120 LLDQLGI-PWIKSEGEA 135
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA--EHSSQK----NMYLRA 54
MGV+ LW IL + K + +L+D+T A+DL+ WIC++ ++A +H+ K N++ R
Sbjct: 1 MGVQGLWDILQEVKTTKKLCDLKDRTYAVDLATWICEAESVAALKHAIAKPYLRNLFFRV 60
Query: 55 IMGVKD 60
I ++
Sbjct: 61 ITFTRN 66
>gi|395509172|ref|XP_003758878.1| PREDICTED: uncharacterized protein LOC100916082 [Sarcophilus
harrisii]
Length = 978
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS-QKNMYLRNLFFRT 114
MGV DLW IL P+ P+ LQ KT+A+DLS W+C++ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKRHAPLRSLQGKTLAVDLSLWVCEALAVKKMVGIVVKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
S L L+ VK +FV+EG AP LK D + KR + +
Sbjct: 61 SSLTLMEVKLLFVMEGDAPKLKADVMGKRNETR 93
>gi|301609960|ref|XP_002934532.1| PREDICTED: flap endonuclease GEN homolog 1-like [Xenopus (Silurana)
tropicalis]
Length = 256
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KT+A+DLS W+C++ + + +LRNLFF
Sbjct: 1 MGVTDLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMVKQMIGVVHKPHLRNLFFCI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARNLFFRT 168
S L LLGVK +FV EG+AP +K +T+ KR + + G SA A +A +F++
Sbjct: 61 SSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSAS---AAPPKAGRSYFKS 112
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFF S L LLGVK +FV EG+AP +K +T+ KR + + G SA R+ K +
Sbjct: 54 RNLFFCISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPPKAGRSYFKSV 113
>gi|449498163|ref|XP_002196947.2| PREDICTED: flap endonuclease GEN homolog 1 [Taeniopygia guttata]
Length = 617
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 10/115 (8%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIAEHSSQ-KNMYLRNLFF 112
MGV LW IL P+ R+P+ L+ KT+A+DLS W+C++ T+ + +LRNLFF
Sbjct: 1 MGVTYLWQILEPV--RQPVNMSSLRGKTLAVDLSLWVCEAQTVKKMVGVVTKPHLRNLFF 58
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS--RARNLF 165
R S+ +G+K +FV+EG+AP LK DT+ KR + + G + +AG+ R+LF
Sbjct: 59 RFSFFTSMGIKLVFVMEGEAPRLKADTMSKRNEMR---YGPSKKAGAVRTGRSLF 110
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI-AEHSSQKNMYLRNLFFRT 114
MGV+ LW IL P+ + LQ KT+A+DLS W+C++S + A + +LRNLFFR
Sbjct: 1 MGVQQLWTILAPVKTHCALESLQGKTLAVDLSMWVCEASGVKAMTGAVTRPHLRNLFFRV 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
S+L +GV IFV++G+ P LK T+ KR Q
Sbjct: 61 SHLTKMGVGLIFVVDGEPPELKFQTMMKRNQ 91
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 132 APVLKHDTIEKRQ-------------QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
APV H +E Q +A G A RNLFFR S+L +GV
Sbjct: 11 APVKTHCALESLQGKTLAVDLSMWVCEASGVKAMTGAVTRPHLRNLFFRVSHLTKMGVGL 70
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQ--GRSAGRNVQAGSRARLK 218
IFV++G+ P LK T+ KR Q + G G+ G ++K
Sbjct: 71 IFVVDGEPPELKFQTMMKRNQDRFWGSKTGQKKGLGKPKKMK 112
>gi|410955794|ref|XP_003984535.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Felis catus]
Length = 913
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE----------HSSQKNM 105
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + S+ +
Sbjct: 1 MGVNDLWQILEPVKQHIHLHNLGGKTIAVDLSLWVCEAQTVKKMIGTVLKPHLRXSKSSX 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
+ L FR SYL L+ VK +FV+EG+ P LK D I +R Q + +G+
Sbjct: 61 DINELIFRISYLTLMDVKLVFVMEGEPPKLKADVISRRNQTRYGPSGK 108
>gi|390361636|ref|XP_793916.3| PREDICTED: flap endonuclease GEN homolog 1-like [Strongylocentrotus
purpuratus]
Length = 234
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV++LW IL P+ + I L+ K IA+DL+ W+ +S Q + +LRNLFF
Sbjct: 1 MGVQNLWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLFF 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
RTS L LGVK +FV++G P LK + I +R + +
Sbjct: 61 RTSIFLRLGVKLVFVIDGTPPELKWEEIARRNEVR 95
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV LWGIL+ + E +P+ ++ ++A+DLS WIC +I + ++LRNLFFR
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSITPLPA---LHLRNLFFRLV 57
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
LL PI VL+G AP LK D +++RQQ
Sbjct: 58 GLLRQNTLPIAVLDGVAPSLKSDVMKQRQQ 87
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRAI 55
MGV LWGIL+ + E +P+ ++ ++A+DLS WIC +I + +N++ R +
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSITPLPALHLRNLFFRLV 57
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
RNLFFR LL PI VL+G AP LK D +++RQQ
Sbjct: 50 RNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQ 87
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV LWGIL+ + E +P+ ++ ++A+DLS WIC +I + ++LRNLFFR
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSITPLPA---LHLRNLFFRLV 57
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
LL PI VL+G AP LK D +++RQQ
Sbjct: 58 GLLRQNTLPIAVLDGVAPSLKSDVMKQRQQ 87
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRAI 55
MGV LWGIL+ + E +P+ ++ ++A+DLS WIC +I + +N++ R +
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSITPLPALHLRNLFFRLV 57
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
RNLFFR LL PI VL+G AP LK D +++RQQ
Sbjct: 50 RNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQ 87
>gi|156395298|ref|XP_001637048.1| predicted protein [Nematostella vectensis]
gi|156224157|gb|EDO44985.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI-AEHSSQKNMYLRNLFFRT 114
MGV LW IL P+ + + L+ K + +DLS WIC+++ ++ +LRNLFFR
Sbjct: 1 MGVTQLWNILEPVKKEGSLCSLRGKRLCVDLSCWICEANGAKGLKTNVLKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 159
L GVK +FV++G+ P LK + I KR QA+ SAG V G
Sbjct: 61 WQLTRCGVKLVFVVDGEPPELKWEAIIKRTQARFGSAGNAVVDGC 105
>gi|351699459|gb|EHB02378.1| Flap endonuclease GEN-like protein 1 [Heterocephalus glaber]
Length = 910
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV LW IL P+ + + L +TIA+DLS W+C++ ++ + + +LRNLFFR
Sbjct: 1 MGVNGLWQILEPVKQHVHLRSLSGQTIAVDLSVWVCEAQSVRKMVGTVTKPHLRNLFFRV 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRAR 162
S+L+ + ++ +FV+EG+ LK + KR Q + G S Q R+R
Sbjct: 61 SHLMQMDIRLVFVMEGEPAKLKAGVMSKRNQMRYGPSGKTGSQRTGRSR 109
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLK 218
RNLFFR S+L+ + ++ +FV+EG+ LK + KR Q + G S Q R+R K
Sbjct: 54 RNLFFRVSHLMQMDIRLVFVMEGEPAKLKAGVMSKRNQMRYGPSGKTGSQRTGRSRFK 111
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV++LW IL P+ + I L+ K IA+DL+ W+ +S Q + +LRNLFF
Sbjct: 1 MGVQNLWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLFF 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R S L LGVK +FV++G P LK + I +R + +
Sbjct: 61 RASNFLRLGVKLVFVIDGTPPELKWEEIARRNEVR 95
>gi|221113045|ref|XP_002168588.1| PREDICTED: flap endonuclease GEN homolog 1-like [Hydra
magnipapillata]
Length = 299
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK LW I+ E+ L+ K I +DLS WI ++ I S N ++RN+FFR
Sbjct: 1 MGVKYLWDIINSSKEKTNPDSLRGKVITVDLSIWIVEA--IKLKQSVANSHIRNMFFRIC 58
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-------GRSAGRN 154
YL GVK I V+EGKAP LK +T+ R Q + GRN
Sbjct: 59 YLRKFGVKLIIVIEGKAPDLKQNTMRYRNFCQYGVKLGTASTVGRN 104
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 157 AGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-------GRSAGRN 208
A S RN+FFR YL GVK I V+EGKAP LK +T+ R Q + GRN
Sbjct: 46 ANSHIRNMFFRICYLRKFGVKLIIVIEGKAPDLKQNTMRYRNFCQYGVKLGTASTVGRN 104
>gi|355690015|gb|AER99019.1| Gen-like protein 1, endonuclease [Mustela putorius furo]
Length = 78
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWPILEPVKQHLQLHNLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGK 131
S L L+ VK +FV+EG+
Sbjct: 61 SCLTLMDVKLVFVMEGE 77
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWPILEPVKQHLQLHNLCGKTIAVDLSLWVCEAQTV 41
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + + L+DK +A+D S WI + E +S N ++ F
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLEDKVMAVDASIWIYQFLKAVRDNEGNSVNNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL GVKP+FV +G PVLK +TI +R++ R G+ A AR L
Sbjct: 61 RICKLLYFGVKPVFVFDGGVPVLKRETIRQRKE---RRQGQRENAVLTARKLL 110
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L P+ P+ ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLLEPVGRPVPLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R S LL G+KP+FV +G AP LK TI +R+ + +A + + R
Sbjct: 61 RISKLLFYGIKPVFVFDGGAPALKRTTISERKNKKSGAAASHAKVAER 108
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 124 PIFVLEGKAPVLKHDT-IEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVL 182
P+ +EGKA + I + Q GR + + R S LL G+KP+FV
Sbjct: 18 PLETMEGKAMAIDSSIWIYQFQATMRDKEGRGL-VNAHVLGFLRRISKLLFYGIKPVFVF 76
Query: 183 EGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
+G AP LK TI +R+ + +A + + R
Sbjct: 77 DGGAPALKRTTISERKNKKSGAAASHAKVAER 108
>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
Length = 939
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ----KNMYLRNLF 111
MGV++LW +L+P+ + I L++K +A+D S W+ A Q KN +L F
Sbjct: 1 MGVQNLWLLLSPVGRQIEIESLENKRLAVDASIWLV-QFVKAMRDDQGHMIKNAHLIGTF 59
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R S LL G++P+FV +G+ PVLK T+E+R++
Sbjct: 60 HRVSKLLHYGIRPVFVFDGQTPVLKQQTLERRRK 93
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
F R S LL G++P+FV +G+ PVLK T+E+R++
Sbjct: 59 FHRVSKLLHYGIRPVFVFDGQTPVLKQQTLERRRK 93
>gi|403217913|emb|CCK72405.1| hypothetical protein KNAG_0K00370 [Kazachstania naganishii CBS
8797]
Length = 979
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + L+DK +AID S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIVEPTARPVRLESLEDKKMAIDASIWIYQFLKAMRDPEGNAIKNSHVTGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G PVLK TI+ R +A+ G+ A AR L
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPVLKRKTIKARNEAR---QGKRESAARTARKLL 110
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW +L + P+ +L++K ++ID+S W I ++H + N +L +F
Sbjct: 1 MGVQGLWKLLESAGKPIPVEKLENKVLSIDVSIWMYQIIKGVQESDHGATTNRHLIVMFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL G+KPIFV +G P LK TI +RQ + R+
Sbjct: 61 RICKLLFYGIKPIFVFDGGVPELKKITIAQRQAQKSRA 98
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ + G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKETR---QGKRDNAKSTARKLL 110
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + + LQD+ +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLQDRRMAVDASIWIYQFLKAVRDQEGNALKNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G P LK TI++R++ R G+ A AR L
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPALKRSTIQQRKE---RRQGKRDNASITARKLL 110
>gi|444316930|ref|XP_004179122.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
gi|387512162|emb|CCH59603.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
Length = 1155
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + + LQDK +A+D S WI + + ++ KN ++ F
Sbjct: 1 MGVHSFWDIVNPTAKPVRLDSLQDKKMAVDASIWIYQFLKAVRDDQGNAVKNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ-AQGR 149
R LL G+KP+F+ +G PVLK +TI+KR++ QG+
Sbjct: 61 RICKLLYFGIKPVFIFDGGVPVLKKNTIKKRKERRQGK 98
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W ++ P + LQD+ +A+D S WI + E ++ K+ ++ F
Sbjct: 1 MGVHSFWDVVGPTARPVRLESLQDRKMAVDASIWIYQFLKAVRDQEGNALKHSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G P LK DTI +R++ R G+ A AR L
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPALKQDTIRQRKE---RRQGKRENAAVTARKLL 110
>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
Length = 1238
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + ++ S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ +G+
Sbjct: 61 RLCKLLYYRVRPVFIFDGGVPQLKRDTIARRQQQRGK 97
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 124 PIFVLEGKAPVLK-----HDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
P+ LEGK + H ++ Q ++G + G LF R LL V+P
Sbjct: 18 PVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLG-----LFHRLCKLLYYRVRP 72
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQGR 203
+F+ +G P LK DTI +RQQ +G+
Sbjct: 73 VFIFDGGVPQLKRDTIARRQQQRGK 97
>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
SB210]
Length = 1113
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS----STIAEHSSQKNMYLRNLF 111
MGV+ LW +L+P + + L+ + +AID+S W+ ++ +S KN++L +F
Sbjct: 1 MGVQGLWTLLSPAGRKLKVEALEGQRLAIDVSIWVIRMLYGFASRRMNSEFKNIHLVGIF 60
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R LL LG+KP+FV +GKAP LK T+ RQQ +
Sbjct: 61 KRLCRLLSLGIKPVFVFDGKAPELKRHTLYLRQQQR 96
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
+F R LL LG+KP+FV +GKAP LK T+ RQQ +
Sbjct: 59 IFKRLCRLLSLGIKPVFVFDGKAPELKRHTLYLRQQQR 96
>gi|313230233|emb|CBY07937.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE-----HSSQK---NMYL 107
MG+ LW + ER L+ K IA+DL+ W+ +IA HS K N ++
Sbjct: 1 MGISGLWDSIPDAIERVSSSHLEGKVIAVDLACWVMADKSIANSRMVSHSKDKQVQNFFV 60
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR-QQAQGRSAGR 153
RNLF R LL LGV P+ V +GKAP K T+ R QA+ +S R
Sbjct: 61 RNLFSRVVRLLELGVVPVIVTDGKAPEAKMKTMASRLGQAELKSTNR 107
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P P+ L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTSLWPLLAPSARPTPLPTLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
R LL G+KP+FV +G APVLK T+ +R+Q R G+ V A A
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTVLRRRQ---RREGKVVDAARTA 106
>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
Length = 1011
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I++P+ + + L ++ +A+D S WI + E + +N ++ F
Sbjct: 1 MGVHSLWDIVSPVAKPVRLESLNERRMAVDASIWIYQFLKAMRNKEGDALRNAHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
R LL G+KP+FV +G PVLK +TI +R++ R G+ A + AR L R
Sbjct: 61 RICKLLYYGIKPVFVFDGGVPVLKLNTIRERKE---RRQGKRDTANATARRLLAR 112
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 151 AGRNVQAGSRARN-----LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
A RN + G RN F R LL G+KP+FV +G PVLK +TI +R++ R
Sbjct: 41 AMRN-KEGDALRNAHIIGFFRRICKLLYYGIKPVFVFDGGVPVLKLNTIRERKE---RRQ 96
Query: 206 GRNVQAGSRAR 216
G+ A + AR
Sbjct: 97 GKRDTANATAR 107
>gi|449520116|ref|XP_004167080.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 299
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKN--MYLRNLFFR 113
MGVK+LW IL + P+ LQ+K + IDLS WI + S++++ N YL+ LF+R
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFYR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
L+ L IFV +G P +K T +R
Sbjct: 61 LRTLIALNCSLIFVTDGSIPGIKLSTYRRR 90
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKN--MYLRAIM 56
MGVK+LW IL + P+ LQ+K + IDLS WI + S++++ N YL+ +
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLF 58
>gi|449446177|ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE---HSSQKNMYLRNLFF 112
MGVK+LW IL + P+ LQ+K + IDLS WI + S++++ HS+ K YL+ LF+
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSK-FYLKGLFY 59
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
R L+ L IFV +G P +K T +R
Sbjct: 60 RLRTLIALNCSLIFVTDGSIPGIKLSTYRRR 90
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE---HSSQKNMYLRAIM 56
MGVK+LW IL + P+ LQ+K + IDLS WI + S++++ HS+ K YL+ +
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSK-FYLKGLF 58
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P+ + ++ K +AID S WI +T+ + + N +L
Sbjct: 1 MGVKSLWDLLSPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRALVNAHLVGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G AP LK TI +R++ + +A +V+ R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRATISERKKKKSGAAASHVKIAER 108
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 123 KPIFV--LEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIF 180
+P+ + +EGKA + + QA R + R LL G+KP+F
Sbjct: 15 RPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRALVNAHLVGFLRRICKLLFYGIKPVF 74
Query: 181 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
V +G AP LK TI +R++ + +A +V+ R
Sbjct: 75 VFDGGAPALKRATISERKKKKSGAAASHVKIAER 108
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P+ + L +K +AID S WI + E + K+ ++ F
Sbjct: 1 MGVSGLWNILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP LK TI+KRQ
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQ 92
>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
Length = 1183
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + ++ S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGSVPQLKRDTIARRQQQRSK 97
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 124 PIFVLEGKAPVLK-----HDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
P+ LEGK + H ++ Q ++G + G LF R LL V+P
Sbjct: 18 PVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLG-----LFHRLCKLLYYRVRP 72
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQGR 203
+F+ +G P LK DTI +RQQ + +
Sbjct: 73 VFIFDGSVPQLKRDTIARRQQQRSK 97
>gi|392577233|gb|EIW70362.1| hypothetical protein TREMEDRAFT_43101 [Tremella mesenterica DSM
1558]
Length = 1306
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ + L+ K +AID S W+ + N ++
Sbjct: 1 MGVKGLWSLLNPVARPVQLESLEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R + LL G+KP+FV +G APVLK +TI +R++ R AG A LF
Sbjct: 61 RINKLLFHGIKPVFVFDGGAPVLKRNTIAERKR---RKAGAAANHARMAEKLF 110
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
QA R V + R + LL G+KP+FV +G APVLK +TI +R++ R
Sbjct: 39 QATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAPVLKRNTIAERKR---RK 95
Query: 205 AGRNVQAGSRARL 217
AG A + AR+
Sbjct: 96 AG---AAANHARM 105
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL +G+KP+FV +G APVLK TI R+ R GR A A L
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPVLKRQTINNRKS---RREGRREDAVRTAGKLL 110
>gi|429962438|gb|ELA41982.1| hypothetical protein VICG_00999 [Vittaforma corneae ATCC 50505]
Length = 613
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV++LW IL P C +K E ++KT+A+D S W+ +I + NM + ++ R
Sbjct: 1 MGVRNLWKILEP-CAKKA--EFKNKTLAVDTSIWMHHYKSIPD-----NMVVFSISKRIF 52
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L ++P+FV +GK P K +T+EKR+Q + +S R + R
Sbjct: 53 KILYNKIQPVFVFDGKPPAAKKETVEKRKQNELKSLIRKIVLNKRC 98
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 171 LLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+L ++P+FV +GK P K +T+EKR+Q + +S R + R
Sbjct: 54 ILYNKIQPVFVFDGKPPAAKKETVEKRKQNELKSLIRKIVLNKRC 98
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P+ + L +K +AID S WI + E + K+ ++ F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP LK TI+KRQ
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQ 92
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV LWGIL P + L K +A+D S WI S ++ ++ F
Sbjct: 1 MGVHSLWGILEPTSRAVRLESLSRKRMAVDASIWIYQFLKAVRDKSGNSLTSSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+ P+FV +G APVLK +TI KR++ R G+ A A+ L
Sbjct: 61 RICKLLYFGIMPVFVFDGGAPVLKRETINKRKE---RRQGKRDDATKTAQKLL 110
>gi|336383337|gb|EGO24486.1| hypothetical protein SERLADRAFT_467878 [Serpula lacrymans var.
lacrymans S7.9]
Length = 151
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P+ + ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLLSPVGRPVMLETIEGKALAIDSSIWIYQFQATMRDKDGRALVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G++P+FV +G AP LK +TI +R++ + +A +V+ R
Sbjct: 61 RICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGAAVSHVKLAER 108
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + + L D+ +A+D S WI + E ++ K+ ++ F
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLHDRRMAVDASIWIYQFLKAVRDKEGNAIKSAHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
R LL G+KP+FV +G PVLK TI+KR++ R G+ A + A+ +
Sbjct: 61 RVCKLLYFGIKPVFVFDGGVPVLKRKTIQKRKE---RREGKRDNATNTAKKI 109
>gi|213404960|ref|XP_002173252.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
gi|212001299|gb|EEB06959.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
Length = 1199
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P+ + L +K +AID S WI + E K+ ++ F
Sbjct: 1 MGVTGLWSILEPVNRPVKLETLANKRLAIDASIWIYQFLKAVRDKEGEQMKHSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP+LK TI KRQ
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPMLKRQTIRKRQ 92
>gi|5805306|gb|AAD51936.1|AF162795_1 mutant nucleotide excision repair protein mus201 [Drosophila
melanogaster]
Length = 725
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|340500548|gb|EGR27416.1| hypothetical protein IMG5_195980 [Ichthyophthirius multifiliis]
Length = 989
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW IL+P + I L + +AID+S W+ S +++ + KN++L +F
Sbjct: 1 MGVFGLWTILSPAGRKLNIEALTGQKLAIDVSIWVLRLIYGSLQSKNENFKNIHLICIFK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R LL LG+KP+FV +G+ P LK +T+ +RQ+ +
Sbjct: 61 RLCKLLSLGIKPVFVFDGQPPELKKNTLYQRQKMR 95
Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
+F R LL LG+KP+FV +G+ P LK +T+ +RQ+ +
Sbjct: 58 IFKRLCKLLSLGIKPVFVFDGQPPELKKNTLYQRQKMR 95
>gi|356559829|ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRNLFFR 113
MGVK+LW +L + P+ LQ+K + +DLS W+ ++++ + ++ +YLR LF R
Sbjct: 1 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTS 169
L+ L IFV +G P +K T +R + G+ VQ NL TS
Sbjct: 61 LRALIALNCSLIFVSDGAIPAIKLSTYRRR-----LNVGKEVQVAQNETNLQKATS 111
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRAIM 56
MGVK+LW +L + P+ LQ+K + +DLS W+ ++++ + ++ +YLR +
Sbjct: 1 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLF 58
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQ-KNMYLRNLFF 112
MGV LW I+ P + + L +K +A+D S WI +T S + KN ++ F
Sbjct: 1 MGVHSLWDIVGPTTKPVRLESLSNKRMAVDASIWIYQFLKATPDNGSHKLKNAHILGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQA 157
R +L G+KP+FV +G AP LK +TI +R++A QG+ A V A
Sbjct: 61 RICKVLYFGMKPVFVFDGGAPPLKRETIRQRREARQGKRADAAVTA 106
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQA 211
F R +L G+KP+FV +G AP LK +TI +R++A QG+ A V A
Sbjct: 58 FFRRICKVLYFGMKPVFVFDGGAPPLKRETIRQRREARQGKRADAAVTA 106
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC-------DSSTIAEHSSQKNMYLR 108
MGV LW IL P + L K +A+D S WI DS HSS ++
Sbjct: 1 MGVNSLWDILGPTARPVRLEALTRKRLAVDASIWIYQFLKAVRDSEGNTLHSS----HIV 56
Query: 109 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
F R LL G++P+F+ +G AP LK DTI+KR++ R G+ A A L
Sbjct: 57 GFFRRICKLLYFGIQPVFIFDGGAPALKRDTIKKRKE---RRDGKREDASETAHRLL 110
>gi|321470911|gb|EFX81885.1| hypothetical protein DAPPUDRAFT_49689 [Daphnia pulex]
Length = 257
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST---IAEHSSQKNMYLRNLFF 112
MGV LW +L P+ + P+ L++K +A+D+S W+ ++ A+ + N +L L
Sbjct: 1 MGVHGLWNLLEPVGKPVPLETLENKVLAVDVSIWLHQATKGFRDAQGNPLPNAHLLGLCH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYL 171
R LL +KP+FV +G PVLK T+ R + + N + + + ++ +
Sbjct: 61 RLCKLLFFKIKPVFVFDGGVPVLKRQTMAARHNRRDTAVKNNDMVAEKILSNYIKSEVI 119
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV +LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTNLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL +G+KP+FV +G AP LK TI R + R GR A
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTISNR---KSRREGRREDA 102
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P + L D+ +A+D S WI + + ++ K+ ++ F
Sbjct: 1 MGVHSLWDILGPTARPVRLESLHDQKMAVDASIWIYQFLKAVRDNKGNAVKDAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G P LK TI++R++ + G+ A + AR L
Sbjct: 61 RICKLLFYGIKPVFVFDGGVPALKKATIQERKE---KRQGKRDSAAATARKLL 110
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana
RWD-64-598 SS2]
Length = 1485
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW ++ P+ P+ ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLVEPVGRPVPLETVEGKAMAIDSSIWIYQFQATMRDRDGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL GV+P+FV +G AP +K TI +R++ + +A + + R
Sbjct: 61 RICKLLFYGVRPVFVFDGGAPAMKRGTIMERKRKKSGAAASHAKVAER 108
Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 124 PIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLE 183
P+ +EGKA + + QA R + R LL GV+P+FV +
Sbjct: 18 PLETVEGKAMAIDSSIWIYQFQATMRDRDGRGLVNAHVLGFLRRICKLLFYGVRPVFVFD 77
Query: 184 GKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
G AP +K TI +R++ + +A + + R
Sbjct: 78 GGAPAMKRGTIMERKRKKSGAAASHAKVAER 108
>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
Length = 1237
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + ++ S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|452987544|gb|EME87299.1| hypothetical protein MYCFIDRAFT_147956 [Pseudocercospora fijiensis
CIRAD86]
Length = 1298
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R + R GR A A +
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRAR---KARREGRREDAAQTAAKIL 110
>gi|195116755|ref|XP_002002917.1| GI10377 [Drosophila mojavensis]
gi|193913492|gb|EDW12359.1| GI10377 [Drosophila mojavensis]
Length = 1255
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +AID+S W + ++ S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAIDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +R Q + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGGVPQLKRDTIARRHQQRNK 97
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 124 PIFVLEGKAPVLK-----HDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
P+ LEGK + H ++ Q ++G + G LF R LL V+P
Sbjct: 18 PVETLEGKVLAIDISIWLHQVVKGFQDSKGSALNNAHLLG-----LFHRLCKLLYYRVRP 72
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQGR 203
+F+ +G P LK DTI +R Q + +
Sbjct: 73 VFIFDGGVPQLKRDTIARRHQQRNK 97
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P+ + ++ K++AID S WI +T+ + N ++
Sbjct: 1 MGVKSLWSLLSPVGRPIMLETMEGKSLAIDSSIWIYQFQATMRDKDGHALINAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 156
R S LL G+KP+FV +G AP LK T+ +R++ + +A + +
Sbjct: 61 RISKLLFYGIKPVFVFDGGAPTLKRSTLNERKKKRAGAAASHAR 104
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 210
R S LL G+KP+FV +G AP LK T+ +R++ + +A + +
Sbjct: 61 RISKLLFYGIKPVFVFDGGAPTLKRSTLNERKKKRAGAAASHAR 104
>gi|115474331|ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|222639760|gb|EEE67892.1| hypothetical protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ S+ + ++ +YL+NLF R
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
LL L +FV +G P LK T +R + +A + Q S
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSH 107
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ + ++ KT+AID S WI + N ++
Sbjct: 1 MGVKSLWQLLAPVGRPVQLENMEGKTMAIDSSIWIYQFQATMRDKEGRVLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R + LL G+KP+FV +G AP LK +T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPALKRNTLNQRRE 93
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + LL G+KP+FV +G AP LK +T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPALKRNTLNQRRE 93
>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
Length = 1108
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSTLSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTITRRQQQRNK 97
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L P+ + ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R S LL G+KP+FV +G AP LK TI +R+ + +A + + R
Sbjct: 61 RISKLLFYGIKPVFVFDGGAPALKRSTIAERKSKKSGAAASHAKVAER 108
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
R S LL G+KP+FV +G AP LK TI +R+ + +A + + R
Sbjct: 61 RISKLLFYGIKPVFVFDGGAPALKRSTIAERKSKKSGAAASHAKVAER 108
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS---STIAEHSSQKNMYLRNLFF 112
MGV+ LW IL P + + L+ K +A+D+S W+ + +E N +L LF
Sbjct: 1 MGVQGLWQILEPAGKPVALETLESKVLAVDISMWLHQALKGMRDSEGGPAANAHLVALFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
R LL GVKP+FV +G P LK T+ R Q R A A +AR
Sbjct: 61 RACKLLFYGVKPVFVFDGGVPQLKKQTLAARHQ---RRAAMLADAQRKAR 107
>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
Length = 1236
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
Length = 1238
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCTPQLKRDTIARRQQQRNK 97
>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
Length = 1236
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|195155664|ref|XP_002018721.1| GL25949 [Drosophila persimilis]
gi|194114874|gb|EDW36917.1| GL25949 [Drosophila persimilis]
Length = 576
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCTPQLKRDTIARRQQQRNK 97
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R+ R GR A A L
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRARKS---RREGRREDAVRTAGKLL 110
>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
Length = 1236
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
Length = 1236
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALNNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCTPQLKRDTIARRQQQRNK 97
>gi|410076602|ref|XP_003955883.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
gi|372462466|emb|CCF56748.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
Length = 988
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I+ P + LQD+ +AID S WI + E ++ KN ++ F
Sbjct: 1 MGVHSYWEIVGPTARPVRLESLQDRRMAIDASIWIYQFLKAIRDPEGNALKNSHILGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G P+LK +TI+ R++ + G+ A AR L
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPLLKRNTIKARKEIR---QGKRDSAKRTARKLL 110
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL +G+KP+FV +G AP LK TI+ R + R GR A
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTIQHR---KSRREGRREDA 102
>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans CBS 6340]
Length = 1023
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + + L +K +A+D S WI + E ++ + ++ F
Sbjct: 1 MGVHALWDIVGPTAKPVRLESLSNKRLAVDASIWIYQFLKAVRDKEGNAMRYSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI++R++ R GR A S A+ L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRRTIQQRKE---RRQGRRDNAVSTAKKLL 110
>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
Length = 1237
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKKDTIARRQQQRNK 97
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P+ + ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLLSPVGRPVMLETIEGKALAIDSSIWIYQFQATMRDKDGRALVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYL- 171
R LL G++P+FV +G AP LK +TI +R++ + +A +V+ R R L
Sbjct: 61 RICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGAAVSHVKLAERLLAAQLRREALG 120
Query: 172 -LLLGVKPIFVLEGKAPV 188
P+ +GKAP
Sbjct: 121 HAQANRPPVSKGKGKAPA 138
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
R LL G++P+FV +G AP LK +TI +R++ + +A +V+ R
Sbjct: 61 RICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGAAVSHVKLAER 108
>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
Length = 1235
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 58 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|380472104|emb|CCF46946.1| DNA-repair protein rad13, partial [Colletotrichum higginsianum]
Length = 794
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI+ R+Q R GR A A L
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPTLKRQTIQGRKQ---RREGRREDAVRTAGKLL 110
>gi|365983062|ref|XP_003668364.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
gi|343767131|emb|CCD23121.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Length = 1021
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQ-KNMYLRNLFF 112
MGV W ++ + + LQDK +AID S WI + E+ ++ KN ++ F
Sbjct: 1 MGVHSFWDVVARTSKPVRLESLQDKKMAIDASIWIYQFLKAVRDENGNKVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGR 149
R LL G+KP+FV +G PVLK +TI +R++ QG+
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPVLKRETIRQRREIRQGK 98
>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
Length = 1237
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 58 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGV W ++ P + LQDK +A+D S WI + + + N ++ F
Sbjct: 1 MGVHSFWDVVGPTARPVRLKSLQDKKMAVDASIWIYQFMKAVRDQDGNRVSNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGR 149
R LL G++P+FV +G P LK DTI++R++ QG+
Sbjct: 61 RICKLLYFGIQPVFVFDGGVPALKRDTIKQRREIRQGK 98
Score = 43.1 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 156 QAGSRARN-----LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGR 203
Q G+R N F R LL G++P+FV +G P LK DTI++R++ QG+
Sbjct: 45 QDGNRVSNSHITGFFRRICKLLYFGIQPVFVFDGGVPALKRDTIKQRREIRQGK 98
>gi|154321748|ref|XP_001560189.1| hypothetical protein BC1G_01021 [Botryotinia fuckeliana B05.10]
Length = 904
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 21/155 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P P+ L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLL 172
R LL G+KP+FV +G AP+LK T+ R++ + V+ R
Sbjct: 61 RICKLLFHGIKPVFVFDGGAPILKRQTVLGRKRRREGRREDAVRTAGR------------ 108
Query: 173 LLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
LLGV + K + D+ KR++ +G++ R
Sbjct: 109 LLGV------QMKRRAEEEDSERKRREREGQTRSR 137
>gi|440633177|gb|ELR03096.1| hypothetical protein GMDG_05935 [Geomyces destructans 20631-21]
Length = 1232
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTQLWSVLHPCARPTKLEALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-------EKRQQAQGRSAGR 153
R LL G+KP+FV +G APVLK TI E R+ R+AG+
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTILGRKRWREGRRDDATRTAGK 108
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum
NZE10]
Length = 1395
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P I L + +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWQILQPCARPTKIETLNRRRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-------EKRQQAQGRSAGR 153
R LL G+KP+FV +G AP LK TI E R++ R+AG+
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRARKARREGRREDAARTAGK 108
>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
repair deficiency, complementation group 5 [Ciona
intestinalis]
Length = 948
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV LW +L + + L+ K +A+D+S W+ + S N +L LF R
Sbjct: 1 MGVTGLWKLLEGNGRQVELHTLEGKILAVDISIWLNMAIKGMRGQSANNAHLITLFHRIC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLL 173
LL G+KP+FV +G AP LK T+++R+Q + + ++ A + + + L L
Sbjct: 61 KLLYFGIKPVFVFDGGAPALKQRTLKERRQKKDMNIRQSKNASEKVLQNYLKRQVLQL 118
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKGLQT 222
LF R LL G+KP+FV +G AP LK T+++R+Q + N++ A K LQ
Sbjct: 55 LFHRICKLLYFGIKPVFVFDGGAPALKQRTLKERRQKK----DMNIRQSKNASEKVLQN 109
>gi|302753842|ref|XP_002960345.1| hypothetical protein SELMODRAFT_73710 [Selaginella moellendorffii]
gi|302767900|ref|XP_002967370.1| hypothetical protein SELMODRAFT_86726 [Selaginella moellendorffii]
gi|300165361|gb|EFJ31969.1| hypothetical protein SELMODRAFT_86726 [Selaginella moellendorffii]
gi|300171284|gb|EFJ37884.1| hypothetical protein SELMODRAFT_73710 [Selaginella moellendorffii]
Length = 116
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS---QKNMYLRNLFF 112
MGV LW +L P+ R + L +K +AID S WI +N +L F
Sbjct: 1 MGVHGLWELLAPVGRRVSVELLGNKKLAIDASIWIIQFLKAMRDDRGEVMRNAHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRN 154
R LL L VKP+FV +G P LK T+ +RQ+ Q +S R
Sbjct: 61 RICKLLFLRVKPVFVFDGGTPFLKRRTVIARRRQREQAQSKIRK 104
>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
Length = 1247
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 58 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus
heterostrophus C5]
Length = 1297
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL +G+KP+FV +G AP LK TI R + R GR A
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTIRHR---KSRREGRRDDA 102
>gi|359490377|ref|XP_002263340.2| PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera]
gi|297741051|emb|CBI31782.3| unnamed protein product [Vitis vinifera]
Length = 565
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE-HSSQKN-MYLRNLFFR 113
MGVK+LW IL + P++ LQ+K + IDLS W+ + + H+S K+ +YL+ LF R
Sbjct: 1 MGVKNLWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
L+ L +FV +G P +K T +R
Sbjct: 61 LRALIALNCSLLFVTDGSIPAIKLATYRRR 90
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE-HSSQKN-MYLRAIM 56
MGVK+LW IL + P++ LQ+K + IDLS W+ + + H+S K+ +YL+ +
Sbjct: 1 MGVKNLWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLF 58
>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
gattii WM276]
gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus gattii WM276]
Length = 1263
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ I ++ K +AID S W+ + N ++
Sbjct: 1 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R + LL G+KP+FV +G AP LK TI +R++ + +A + + +
Sbjct: 61 RINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEK 108
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
QA R V + R + LL G+KP+FV +G AP LK TI +R++ + +
Sbjct: 39 QATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 98
Query: 205 AGRNVQAGSR 214
A + + +
Sbjct: 99 AANHAKVAEK 108
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTALWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL +G+KP+FV +G AP LK TI R + R GR A
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTISNR---KSRREGRREDA 102
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 21/155 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P P+ L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLL 172
R LL G+KP+FV +G AP+LK T+ R++ + V+ R
Sbjct: 61 RICKLLFHGIKPVFVFDGGAPILKRQTVLGRKRRREGRREDAVRTAGR------------ 108
Query: 173 LLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
LLGV + K + D+ KR++ +G++ R
Sbjct: 109 LLGV------QMKRRAEEEDSERKRREREGQTRSR 137
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus
sativus ND90Pr]
Length = 1213
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL +G+KP+FV +G AP LK TI R + R GR A
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTIRHR---KSRREGRRDDA 102
>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
Length = 1098
Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ E+ + LQDK +AID S WI S N +L F+
Sbjct: 1 MGVPKLWDLVQECGEKVDLESLQDKVLAIDASIWIHTFLSSLKDGRGDITPNAHLVGFFW 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRT 168
R LL V+PIFV +G P LK TI++R++ R +N + R L +T
Sbjct: 61 RILKLLTFKVRPIFVFDGSVPFLKQKTIDERRKR--REKTQNAIEKNARRVLLIKT 114
>gi|268568094|ref|XP_002640157.1| C. briggsae CBR-XPG-1 protein [Caenorhabditis briggsae]
Length = 886
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR L R S
Sbjct: 1 MGIAGLWKIIEPTATEIPLECLEGKKLAIDVSIWIY-QAQLAYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQ 145
LL ++P+FV +G + PVLK +E R+Q
Sbjct: 60 KLLFYKIRPVFVFDGPQVPVLKRQVLESRRQ 90
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMG 57
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR ++
Sbjct: 1 MGIAGLWKIIEPTATEIPLECLEGKKLAIDVSIWIY-QAQLAYPSDQPFPHLRLLVN 56
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +LTP+ + ++ KT+AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R + LL G+KP+FV +G APV+K T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPVIKRATLSERKK 93
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + LL G+KP+FV +G APV+K T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPVIKRATLSERKK 93
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP+LK TI R++ R GR A A L
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQTIAARKK---RRDGRREDAVRTAGKLL 110
>gi|51092043|gb|AAT94435.1| RE62451p [Drosophila melanogaster]
Length = 932
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L+ K +A+D+S W + + S+ N +L LF
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 58 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 97
>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1323
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ I ++ K +AID S W+ + N ++
Sbjct: 65 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLR 124
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R + LL G+KP+FV +G AP LK TI +R++ + +A + + +
Sbjct: 125 RINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEK 172
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
QA R V + R + LL G+KP+FV +G AP LK TI +R++ + +
Sbjct: 103 QATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 162
Query: 205 AGRNVQAGSR 214
A + + +
Sbjct: 163 AANHAKVAEK 172
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL G++P+FV +G AP LK TI+KR+Q R GR A
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQKRKQ---RREGRREDA 102
>gi|156717288|ref|NP_001096186.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Xenopus (Silurana) tropicalis]
gi|134024505|gb|AAI36228.1| ercc5 protein [Xenopus (Silurana) tropicalis]
Length = 847
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +AID+S W+ + A + ++ +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPINAETLEGKILAIDISIWLNQAVKGARDRQGNAIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
F R LL ++PIFV +G+AP+LK T+ KR+Q + ++
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRKDNASNE 101
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
LF R LL ++PIFV +G+AP+LK T+ KR+Q + ++
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRKDNASNE 101
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL +G+KP+FV +G AP LK TI R+ R GR A A L
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTISARKS---RREGRREDAVRTASKLL 110
>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. neoformans JEC21]
gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1323
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ I ++ K +AID S W+ + N ++
Sbjct: 65 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLR 124
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R + LL G+KP+FV +G AP LK TI +R++ + +A + + +
Sbjct: 125 RINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEK 172
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
QA R V + R + LL G+KP+FV +G AP LK TI +R++ + +
Sbjct: 103 QATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 162
Query: 205 AGRNVQAGSR 214
A + + +
Sbjct: 163 AANHAKVAEK 172
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +LTP+ + ++ KT+AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R + LL G+KP+FV +G APV+K T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPVIKRATLSERKK 93
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + LL G+KP+FV +G APV+K T+ +R++
Sbjct: 61 RITKLLFYGIKPVFVFDGGAPVIKRATLSERKK 93
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW ++ P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-------EKRQQAQGRSAGR 153
R LL GVKP+FV +G AP LK T+ E RQ+ R+AG+
Sbjct: 61 RICKLLWYGVKPVFVFDGGAPALKRATLQARRRRREGRQEDAARTAGK 108
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL G++P+FV +G AP LK TI+KR+Q R GR A
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQKRKQ---RREGRREDA 102
>gi|256070941|ref|XP_002571800.1| xp-G/rad2 DNA repair endonuclease family [Schistosoma mansoni]
gi|353228641|emb|CCD74812.1| putative xp-G/rad2 DNA repair endonuclease family [Schistosoma
mansoni]
Length = 991
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV LW +L P E + +L K +AID++ W+ + + YL F R
Sbjct: 1 MGVPGLWRLLEPAREPIELQQLSGKILAIDMNIWLHQAVKSRGAAGGPRNYLAIFFRRLC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
LL G+KP+FV +G+ P LK TI R+Q + S + +A
Sbjct: 61 KLLFFGIKPVFVFDGETPALKRSTINSRRQLRNLSEAKAEKA 102
>gi|390368964|ref|XP_003731559.1| PREDICTED: uncharacterized protein LOC100891055, partial
[Strongylocentrotus purpuratus]
Length = 804
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV+ LW ++ + L+ K IA+D+S W+ + +S N +L+ LF R
Sbjct: 1 MGVQGLWRLVESTGRPVNLESLEGKVIAVDVSIWLNQAVLGVHGNSLSNPHLQVLFNRIC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
LL +KPIFV +G P LK T+ R+Q + +A R + R
Sbjct: 61 KLLFYRIKPIFVFDGAPPQLKKQTLAARRQRKNLAAARTEKTTER 105
Score = 40.0 bits (92), Expect = 0.69, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
LF R LL +KPIFV +G P LK T+ R+Q + +A R + R
Sbjct: 55 LFNRICKLLFYRIKPIFVFDGAPPQLKKQTLAARRQRKNLAAARTEKTTER 105
>gi|267421|sp|P14629.1|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
Length = 1196
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + A + ++ +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
F R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 206
LF R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus
laevis]
gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
Length = 1197
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + A + ++ +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
F R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 206
LF R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEHSSQ--KNMYLRNLFF 112
MGVK LW +L + + L++K +A+D+S W+ +S + +H +N +L LF+
Sbjct: 1 MGVKGLWKLLESAGQPITLESLENKILAVDISLWLNESLRGMRDHQGSLIENAHLLGLFY 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R LL ++P+FV +G P+LK TI K Q
Sbjct: 61 RLCKLLFFKIRPVFVFDGGVPLLKKQTISKLVDVQ 95
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
LF+R LL ++P+FV +G P+LK TI K Q
Sbjct: 58 LFYRLCKLLFFKIRPVFVFDGGVPLLKKQTISKLVDVQ 95
>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis mellifera]
Length = 1094
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH---SSQKNMYLRNLFF 112
MGV LW +L ++ P+ L+ K +AID+S WI + + + N +L LF
Sbjct: 1 MGVYGLWRLLNATGKQVPLETLEGKVLAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTS 169
R LL +KPIFV +G P+LK DTI R++ + + + Q + N + S
Sbjct: 61 RICKLLYYKIKPIFVFDGGVPMLKKDTIALRRKQKSMAKNKAQQMRTELINNLIKHS 117
>gi|357139431|ref|XP_003571285.1| PREDICTED: flap endonuclease GEN-like 2-like [Brachypodium
distachyon]
Length = 706
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ S+ + + +YL+NLF R
Sbjct: 1 MGVKNLWDILDSCKQKLPLNHLQNKKVCVDLSCWLVQFCSANRSPAFVKDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
LL L IFV +G P +K T +R
Sbjct: 61 IRALLALNCSLIFVTDGAIPSVKLATYRRR 90
>gi|358341292|dbj|GAA49005.1| DNA excision repair protein ERCC-5 [Clonorchis sinensis]
Length = 1013
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 56 MGVKDLWGILTPICERKPIW--ELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFR 113
MGV LW +L P R+PI +L KT+AID++ W+ + + YL LF R
Sbjct: 1 MGVPGLWELLEPA--RRPIELEQLTGKTVAIDMNIWLHQAVKSRASTGGPKAYLTVLFRR 58
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
L+ G++P+FV +G P LK T+ R++ + A R +A R
Sbjct: 59 LCKLIYFGIRPVFVFDGDVPALKKATMAVRRRLRHNLADRANEARQR 105
>gi|357620639|gb|EHJ72769.1| hypothetical protein KGM_08405 [Danaus plexippus]
Length = 1103
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L++K +A+D+S W+ A+ + N +L LF
Sbjct: 1 MGVTGLWRLIEPAGKPVPVETLENKVLAVDISIWLHQMVKGYQDAKGAPLPNAHLIGLFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL +KP+FV +G P LK +TI KRQ
Sbjct: 61 RLCKLLYFRIKPVFVFDGGFPDLKRETIAKRQ 92
>gi|401888761|gb|EJT52712.1| hypothetical protein A1Q1_02762 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1245
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L P+ I L+ K +AID S W+ ST+ + + N ++
Sbjct: 1 MGVKGLWSLLNPVGRPVQIESLEGKRLAIDSSIWLYQFQSTMRDKEGRVLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R + LL G+KP+FV +G AP LK TI +R++
Sbjct: 61 RINKLLFHGIKPVFVFDGGAPALKRSTIAERKR 93
>gi|156045904|ref|XP_001589507.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980]
gi|154693624|gb|EDN93362.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1188
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P P+ L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK T+
Sbjct: 61 RICKLLFHGIKPVFVFDGGAPILKRQTV 88
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 55 IMGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLF 111
IMGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 55 IMGVTCLWTVVKPCARPIKLETLNGKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFF 114
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R++ R GR+ A A L
Sbjct: 115 RRICKLLYFGIKPVFVFDGGAPTLKRQTITARKK---RREGRSEDAARTAGKLL 165
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 51 YLRAIMGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYL 107
+ MGVK LW +L P+ + ++ K +AID S WI +T+ + + N ++
Sbjct: 1626 FFSTKMGVKSLWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHV 1685
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G APVLK TI +R++ + +A + + R
Sbjct: 1686 LGFLRRICKLLFYGIKPVFVFDGGAPVLKRATIAERKKKKSGAALSHAKVAER 1738
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 171 LLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
LL G+KP+FV +G APVLK TI +R++ + +A + + R
Sbjct: 1695 LLFYGIKPVFVFDGGAPVLKRATIAERKKKKSGAALSHAKVAER 1738
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL G+KP+FV +G AP LK TI+ R+Q R GR A
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPALKRQTIQGRKQ---RREGRREDA 102
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW IL+P + L K +AID S WI + E ++ +N +L F
Sbjct: 1 MGVQSLWTILSPSARPTDLATLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHLVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL GVKP+FV +G AP LK T++
Sbjct: 61 RICKLLWYGVKPVFVFDGGAPALKRATLQ 89
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P+ + ++ K +AID S WI +T+ + + N +L
Sbjct: 1 MGVKQLWKLLSPVGRPVLLETMEGKALAIDSSIWIYQFQATMRDKEGRGLVNAHLLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G AP LK TI +R++ + +A + + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRSTIVERKRRKAGAAISHAKVAER 108
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
R LL G+KP+FV +G AP LK TI +R++ + +A + + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRSTIVERKRRKAGAAISHAKVAER 108
>gi|168010775|ref|XP_001758079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690535|gb|EDQ76901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1718
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW +L P+ R + L + +AID S WI +N +L F
Sbjct: 1 MGVHGLWELLAPVGRRVSVESLGSRKLAIDASIWIIQFMKAMRDDRGDMIRNAHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
R LL L VKP+FV +G P LK T+ +R+QAQ R
Sbjct: 61 RICKLLFLRVKPVFVFDGGTPALKRRTVIARRRQREQAQSR 101
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 203
F R LL L VKP+FV +G P LK T+ +R+QAQ R
Sbjct: 58 FFRRICKLLFLRVKPVFVFDGGTPALKRRTVIARRRQREQAQSR 101
>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
Length = 1176
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIAEHS---SQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + A S +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPINPETLEGKILAVDISIWLNQAIKGARDRGGISVRNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G+AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQ 93
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G+AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQ 93
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
Length = 1128
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R+Q R GR A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQ---RREGRREDAARTAGKLL 110
>gi|242080167|ref|XP_002444852.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
gi|241941202|gb|EES14347.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
Length = 698
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ + + + +YL+NLF R
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
LL L IFV +G P +K T +R
Sbjct: 61 IRALLALNCSLIFVSDGAIPSVKLATYRRR 90
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R+Q R GR A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQ---RREGRREDAARTAGKLL 110
>gi|270006914|gb|EFA03362.1| hypothetical protein TcasGA2_TC013347 [Tribolium castaneum]
Length = 1015
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + P+ L++K +A+D+S W I A+ ++ + +L ++
Sbjct: 1 MGVHGLWRLIEPSGKPVPLESLENKVLAVDVSIWLHQIVKGFQDAKGAAVPHAHLLGIYH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL +KP+FV +G PVLK TI R Q + ++
Sbjct: 61 RVCKLLYFRIKPVFVFDGGVPVLKRQTIALRNQQKSKT 98
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R+Q R GR A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQ---RREGRREDAARTAGKLL 110
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici
IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici
IPO323]
Length = 1324
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWQIVQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP LK TI R+
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRARK 92
>gi|380025170|ref|XP_003696351.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis florea]
Length = 1095
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH---SSQKNMYLRNLFF 112
MGV LW +L ++ P+ L+ K +AID+S WI + + + N +L LF
Sbjct: 1 MGVYGLWRLLNTTGKQVPLETLEGKILAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTS 169
R LL +KP+FV +G P+LK DTI R++ + + + Q + N + S
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKDTIALRRKQKSMAKNKAQQMRTELINNLIKHS 117
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
R LL G+KP+FV +G AP LK TI R+Q R G+ A A
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQ---RREGKRENAAKTA 106
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL G+ P+FV +G APVLK TI+ R+Q R GR A
Sbjct: 61 RICKLLWFGILPVFVFDGGAPVLKRQTIQHRKQ---RREGRREDA 102
>gi|358390983|gb|EHK40388.1| hypothetical protein TRIATDRAFT_41742 [Trichoderma atroviride IMI
206040]
Length = 1172
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
R LL G+ P+FV +G AP LK TI+KR+Q R GR A
Sbjct: 61 RICKLLWFGILPVFVFDGGAPALKRATIQKRKQ---RREGRREDA 102
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +LTP+ + ++ K +AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWELLTPVGRPVMLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVVGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 156
R L+ G+KP+FV +G AP LK T+ +R+ + +A + Q
Sbjct: 61 RICKLMYYGIKPVFVFDGGAPALKRSTLTERKNKKNGAAASHQQ 104
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 210
R L+ G+KP+FV +G AP LK T+ +R+ + +A + Q
Sbjct: 61 RICKLMYYGIKPVFVFDGGAPALKRSTLTERKNKKNGAAASHQQ 104
>gi|341882846|gb|EGT38781.1| hypothetical protein CAEBREN_21263 [Caenorhabditis brenneri]
Length = 809
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR L R S
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIY-QAQLAYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQ 147
LL ++P+FV +G + P LK +E R+Q +
Sbjct: 60 KLLFYKIRPVFVFDGPQVPALKRQVLEARRQKK 92
>gi|303270953|ref|XP_003054838.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462812|gb|EEH60090.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 125
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P R + LQ + +A+D S W+ N +L F
Sbjct: 1 MGVKGLWTLLEPAGRRVNVEALQGRKVAVDASIWLVQFVKAMRDERGDMLPNAHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
R LL ++P+FV +G PVLK++T R++ + R
Sbjct: 61 RICRLLYHRIRPVFVFDGATPVLKYNTTRARRRVRDNDQAR 101
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L P+ + ++ K++AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWQLLEPVGRPVLLETMEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G AP LK TI +R+ + +A + + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKMSTIAERKNKKSGAAASHAKIAER 108
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
R LL G+KP+FV +G AP LK TI +R+ + +A + + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKMSTIAERKNKKSGAAASHAKIAER 108
>gi|341885112|gb|EGT41047.1| hypothetical protein CAEBREN_21721 [Caenorhabditis brenneri]
Length = 833
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR L R S
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIY-QAQLAYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQ 147
LL ++P+FV +G + P LK +E R+Q +
Sbjct: 60 KLLFYKIRPVFVFDGPQVPALKRQVLEARRQKK 92
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
R LL G+KP+FV +G AP LK TI R+Q R G+ A A
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQ---RREGKRENAARTA 106
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R++ R GR+ A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTITARKK---RREGRSEDAARTAGKLL 110
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ-AQGRSAGRNVQAG 212
F R LL G+KP+FV +G AP LK TI R++ +GRS AG
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPTLKRQTITARKKRREGRSEDAARTAG 107
>gi|226529749|ref|NP_001149363.1| XPG I-region family protein [Zea mays]
gi|224029981|gb|ACN34066.1| unknown [Zea mays]
gi|413941545|gb|AFW74194.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ + + + +YL+NLF R
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
L+ L IFV +G P +K T +R
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRR 90
>gi|195626660|gb|ACG35160.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ + + + +YL+NLF R
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
L+ L IFV +G P +K T +R
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRR 90
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
R LL G+KP+FV +G AP LK TI R+Q R G+ A A
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQ---RREGKRENAARTA 106
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW IL P + L + +A+D S WI A + K ++ F
Sbjct: 1 MGVHALWDILGPTARPVKLESLSNNRMAVDASIWIYQFLKAARDKNGNRLKGAHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G P LK +TI +R++ R G+ A AR L
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPPLKRETIRQRKE---RREGKRESAAVTARKLL 110
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
R LL G+KP+FV +G AP LK TI R+Q R G+ A A
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQ---RREGKRENAARTA 106
>gi|390340292|ref|XP_791943.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Strongylocentrotus purpuratus]
Length = 1373
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV+ LW ++ + L+ K IA+D+S W+ + +S N +L+ LF R
Sbjct: 1 MGVQGLWRLVESTGRPVNLESLEGKVIAVDVSIWLNQAVLGVHGNSLSNPHLQVLFNRIC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
LL +KPIFV +G P LK T+ R+Q + +A R + R
Sbjct: 61 KLLFYRIKPIFVFDGAPPQLKKQTLAARRQRKNLAAARTEKTTER 105
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
LF R LL +KPIFV +G P LK T+ R+Q + +A R + R
Sbjct: 55 LFNRICKLLFYRIKPIFVFDGAPPQLKKQTLAARRQRKNLAAARTEKTTER 105
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV DLW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTDLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTI 88
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 56 MGVKDLWGILTPICERKP-------------------IWELQDKTIAIDLSAWICD-SST 95
MGVK LW +L+P P + L+ K +AID S W+ +T
Sbjct: 1 MGVKQLWTLLSPAGRPVPYVICIIVITTGQLTNAICSLETLEGKVLAIDSSIWLYQFQAT 60
Query: 96 IAEHSSQK--NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
+ + + N ++ RTS LL G+KP+FV +G APVLK TI +R++ + +A
Sbjct: 61 MRDKEGRALVNAHILGFLRRTSKLLFHGIKPVFVFDGGAPVLKRSTIAERKKRKSGAAAN 120
Query: 154 NVQAGSR 160
+ + R
Sbjct: 121 HAKVAER 127
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
RTS LL G+KP+FV +G APVLK TI +R++ + +A + + R
Sbjct: 80 RTSKLLFHGIKPVFVFDGGAPVLKRSTIAERKKRKSGAAANHAKVAER 127
>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS---QKNMYLRNLFF 112
MGVK+LW IL + P+ LQ+K + IDLS W+ + + + Y+RNLF
Sbjct: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLQNVNKTHCGLVKDKPYIRNLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
R L+ L IFV +G P +K T +R
Sbjct: 61 RLRALIALNCSLIFVADGSIPAIKLATYRRR 91
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGVK+LW IL + P+ LQ+K + IDLS W+
Sbjct: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWM 35
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTI 88
>gi|449272261|gb|EMC82261.1| DNA repair protein complementing XP-G cell [Columba livia]
Length = 1133
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIAEH---SSQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + A +S ++ +L L
Sbjct: 1 MGVQGLWKLLE--CAGRPINPETLEGKILAVDISIWLNQAIKGARDRGGNSVRSAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G+AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQ 93
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 148 GRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R G N + LF R LL ++P+FV +G+AP+LK T+ KR+Q
Sbjct: 42 ARDRGGNSVRSAHLLTLFHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQ 93
>gi|312377995|gb|EFR24684.1| hypothetical protein AND_10542 [Anopheles darlingi]
Length = 1428
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ + P+ L++K +A+D+S W + ++ S+ N ++ LF
Sbjct: 1 MGVLGLWKLIEQSGKPVPLETLENKVLAVDVSIWLHQVIKGFQDSKGSALPNAHVLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 148
R L+ +KPIFV +G PVLK TI KR Q++
Sbjct: 61 RLCKLMFYRIKPIFVFDGGVPVLKKQTIAKRNQSRN 96
>gi|297816098|ref|XP_002875932.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
gi|297321770|gb|EFH52191.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRNLFFR 113
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR LF R
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCAAKEKVYLRGLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG---SRARNL 164
L+ L I V +G P +K T +R +A+ A V+ S RN+
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYRRRLKARFEVADDGVEPSKETSLKRNM 114
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRAIM 56
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR +
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCAAKEKVYLRGLF 58
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+KP+FV +G AP LK TI R++ R GR A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTITARKK---RREGRTEDAARTAGKLL 110
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
F R LL G+KP+FV +G AP LK TI R++ R GR A A
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPALKRQTITARKK---RREGRTEDAARTA 106
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G APVLK +TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRETI 88
>gi|392885946|ref|NP_491891.2| Protein XPG-1 [Caenorhabditis elegans]
gi|351063324|emb|CCD71482.1| Protein XPG-1 [Caenorhabditis elegans]
Length = 820
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR L R S
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIY-QAQLAYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQ 145
LL ++P+FV +G + P LK +E R+Q
Sbjct: 60 KLLFYKIRPVFVFDGPQVPPLKRQVLEARRQ 90
>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
Length = 1193
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQK-NMYLRNLFF 112
MGV LW +L + P+ L+ K +AID+S WI H + K N +L LF
Sbjct: 1 MGVHGLWKLLEASGKPVPLESLEGKVLAIDISIWIYQVLQGYQDRHGTPKPNAHLLGLFT 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL +KP+FV +G P+LK +TI ++Q++ S + ++A
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKNTIALRRKQKSIATSKAQKMKA 107
>gi|7576228|emb|CAB87918.1| putative protein [Arabidopsis thaliana]
Length = 337
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRNLFFR 113
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR F R
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG---SRARNLFFRTSY 170
L+ L I V +G P +K T ++R +A+ A V+ S RN+ S
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 171 LLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
+ +K V+ +L D IE +A+ + A N ++ R
Sbjct: 121 I----IKEAKVIASTLGILCLDGIE---EAEAQCALLNSESLCR 157
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRAIM 56
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFF 58
>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
Length = 1135
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|378725893|gb|EHY52352.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 1319
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVAPTARPTQLASLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK +TI
Sbjct: 61 RICKLLYYGIKPVFVFDGGAPILKRETI 88
>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1066
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV+ LW +L P R + L+ T+AID+S W+ + E +N +L
Sbjct: 1 MGVQGLWKLLAPCGRRISVETLEHTTLAIDVSIWLTQFVKAMRDDEGRPIRNAHLIGTLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R + LL GV+P+FV +G PV+K I +RQ
Sbjct: 61 RVAKLLYHGVRPVFVFDGGVPVVKARLIRQRQ 92
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides
Nara gc5]
Length = 1240
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+KP+FV +G APVLK TI+
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPVLKRQTIQ 89
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P+ + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPVARPVKLETLAQKRLAIDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G AP+LK TI R + R + A + A+ L
Sbjct: 61 RIVKLLFHGIRPVFVFDGGAPLLKRQTIANR---KSHRQDRKLDASNTAKKLL 110
>gi|157819261|ref|NP_001100380.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Rattus norvegicus]
gi|149046241|gb|EDL99134.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (mapped) [Rattus norvegicus]
Length = 862
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPVSPEALEGKVLAVDISIWLNQALKGVRDRHGNAIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|452824082|gb|EME31087.1| DNA excision repair protein ERCC-5 [Galdieria sulphuraria]
Length = 928
Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW ++ P+ R + +++KT+A+D+S W+ + +E +N +L +
Sbjct: 1 MGVKGLWELVAPVGRRVSLDTVRNKTLAVDVSIWLTQFLYAMRDSEGELIRNAHLLGILR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R L+ V PIFV +G P LK T+ R+ + +
Sbjct: 61 RCCKLIFYNVTPIFVFDGATPQLKRRTLNSRRNQRNK 97
>gi|134057865|emb|CAK44589.1| unnamed protein product [Aspergillus niger]
Length = 187
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQTI 88
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
Length = 1128
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQTI 88
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---AEHSSQKNMYLRNLFF 112
MGV+ LW +L P+ I L+ K +AID S W+ E + N ++ +
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFLW 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
R LL GV+P+FV +G APV+K T+ GR A R S AR
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMKRKTL------SGRKARRQGAKESHAR 104
>gi|432119340|gb|ELK38422.1| DNA repair protein complementing XP-G cells [Myotis davidii]
Length = 1164
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPVSPETLEGKILAVDISIWLNQALKGVRDRHGNAIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|296412158|ref|XP_002835793.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629586|emb|CAZ79950.1| unnamed protein product [Tuber melanosporum]
Length = 200
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I P + L K +A+D S WI + E + ++ ++ F
Sbjct: 1 MGVTGLWTIANPCARPVKLESLARKRLAVDASIWIYQFLKAVRDKEGHALQSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-------EKRQQAQGRSAGR 153
R LL G+KP+FV +G AP LK TI E R++ R+AGR
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPPLKRQTIAGRKARREGRKEDARRTAGR 108
>gi|380810474|gb|AFE77112.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
gi|383416485|gb|AFH31456.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
Length = 1182
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
>gi|357498397|ref|XP_003619487.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|355494502|gb|AES75705.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 571
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS--QKNMYLRNLFFR 113
MGVK+LW IL + P+ LQ+K + +DLS W+ + + + ++ ++LR LF R
Sbjct: 1 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVCKSHACLKEKVHLRGLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
L+ L +FV +G P +K T +R
Sbjct: 61 LRALIALNCTVVFVSDGSIPAIKLSTYRRR 90
>gi|355701088|gb|EHH29109.1| hypothetical protein EGK_09444 [Macaca mulatta]
Length = 1194
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
>gi|297274787|ref|XP_001096257.2| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Macaca mulatta]
Length = 1182
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
Length = 1135
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
Length = 1641
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L P+ R + L K +AID S WI + +N +L F
Sbjct: 1 MGVQGLWDLLAPVGRRVSVETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRNAHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
R LL L KP+FV +G P LK T+ +R+ AQ +
Sbjct: 61 RICKLLYLRTKPVFVFDGATPALKRRTVIARRRQRESAQAK 101
>gi|308473689|ref|XP_003099068.1| CRE-XPG-1 protein [Caenorhabditis remanei]
gi|308267722|gb|EFP11675.1| CRE-XPG-1 protein [Caenorhabditis remanei]
Length = 828
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + ++ S Q +LR L R S
Sbjct: 1 MGITGLWKIIEPTATEIPLECLEGKKLAIDVSIWIY-QAQLSYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQ 147
LL ++P+FV +G + P LK +E R+Q +
Sbjct: 60 KLLFYKIRPVFVFDGPQVPSLKRQVLEARRQKK 92
>gi|428169298|gb|EKX38233.1| ERCC5/XPG/Rad2 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 118
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW +L + + L + +A+D S WI + ++ S Q+N +L +F
Sbjct: 1 MGVHGLWELLGVTGRKVEVQALGSRRVAVDASIWIIQFIKAMRQSDGSMQQNAHLLGMFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL + VKP+ V +G AP +K T++ R++ + R
Sbjct: 61 RICKLLFMKVKPVIVFDGVAPAIKRKTLQARKRVRQRG 98
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
R + ++Q + +F R LL + VKP+ V +G AP +K T++ R++ + R
Sbjct: 43 RQSDGSMQQNAHLLGMFRRICKLLFMKVKPVIVFDGVAPAIKRKTLQARKRVRQRG 98
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI---EKRQQAQGRSAGR 153
R LL G++P+FV +G APV+K TI +KR++ A R
Sbjct: 61 RICKLLYFGIRPVFVFDGGAPVMKRQTIAGRKKRREGHREDAAR 104
>gi|186510820|ref|NP_001118795.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|166221584|sp|Q9M2Z3.2|GENL2_ARATH RecName: Full=Flap endonuclease GEN-like 2
gi|332644951|gb|AEE78472.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 600
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRNLFFR 113
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR F R
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG---SRARNL 164
L+ L I V +G P +K T ++R +A+ A V+ S RN+
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNM 114
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRAIM 56
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFF 58
>gi|391869945|gb|EIT79134.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 1066
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|388858154|emb|CCF48222.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Ustilago hordei]
Length = 1592
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFF 112
MGV+ LW +L P+ I L+ K +AID S W+ E + N ++ +
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDREGRTLSNAHILGFLW 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLL 172
R LL GV+P+FV +G APV+K T+ GR A + S A RT+ L
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMKRKTL------SGRKARKQGAKESHA-----RTAEKL 109
Query: 173 LLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
L A ++ I+ Q R+ Q GS A+
Sbjct: 110 L------------AAQMRQAAIKHVADGQARAPSSGAQQGSGAQ 141
>gi|291235424|ref|XP_002737645.1| PREDICTED: DNA-repair protein complementing XP-G cells homolog
[Saccoglossus kowalevskii]
Length = 854
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGVK LW +L + + L+ K +A+D+S W+ D + IA N +
Sbjct: 1 MGVKGLWRLLESTGQPVTLESLEGKILAVDISLWLNQAVKGMRGRDGNPIA------NAH 54
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR-ARNLF 165
L LF R LL +KP+FV +G P+LK T+ R Q Q ++ + +A + +N
Sbjct: 55 LVVLFNRICKLLFYRIKPVFVFDGGVPLLKKQTLALRSQRQDKAVKESNKARQKLLQNFL 114
Query: 166 FRTSYLLLLG 175
+T+ +LG
Sbjct: 115 KKTAITTVLG 124
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKGLQT 222
LF R LL +KP+FV +G P+LK T+ R Q Q ++ V+ ++AR K LQ
Sbjct: 58 LFNRICKLLFYRIKPVFVFDGGVPLLKKQTLALRSQRQDKA----VKESNKARQKLLQN 112
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTI 88
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEK 142
R LL G++P+FV +G APVLK TI++
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPVLKRQTIQQ 90
>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
Length = 1170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
Length = 1166
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|348583617|ref|XP_003477569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells-like [Cavia porcellus]
Length = 1169
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS---STIAEHSSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +S +N +L LF
Sbjct: 1 MGVQGLWKLLESSGRQVSPEALEGKVLAVDISIWLNQALKGVRDRQGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTI 88
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+KP+FV +G AP LK TI+
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRATIQ 89
>gi|408360334|sp|P35689.4|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=DNA excision repair protein ERCC-5;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
Length = 1170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|443897481|dbj|GAC74821.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 1544
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---AEHSSQKNMYLRNLFF 112
MGV+ LW +L P+ I L+ K +AID S W+ E + N ++ +
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFLW 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI---EKRQQAQGRSAGRNVQ 156
R LL GV+P+FV +G APV+K T+ + R+Q S R +
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMKRKTLSGRKARKQGAKESHARTAE 107
>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
Length = 1170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
Length = 1170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
Length = 1043
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + NV + LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 43 RDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|355754793|gb|EHH58694.1| hypothetical protein EGM_08605, partial [Macaca fascicularis]
Length = 1000
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 93
>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1171
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + NV + LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 43 RDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|336463192|gb|EGO51432.1| hypothetical protein NEUTE1DRAFT_70166 [Neurospora tetrasperma FGSC
2508]
gi|350297610|gb|EGZ78587.1| PIN domain-like protein [Neurospora tetrasperma FGSC 2509]
Length = 1269
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+KP+FV +G AP LK TI+
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRATIQ 89
>gi|449298336|gb|EMC94351.1| hypothetical protein BAUCODRAFT_73871 [Baudoinia compniacensis UAMH
10762]
Length = 1348
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P I L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRATI 88
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV+ LW I+ + L +A+D S WI + +KN +L F R
Sbjct: 1 MGVRGLWEIVQSTARPVKVETLGGNRLAVDASIWIYQFLKTTRGAGKKNAHLVGFFRRIL 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTI 140
LL LG+KP+FV +G AP LK T+
Sbjct: 61 KLLFLGIKPVFVFDGVAPELKRKTV 85
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL LG+KP+FV +G AP LK T+
Sbjct: 55 FFRRILKLLFLGIKPVFVFDGVAPELKRKTV 85
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWDVVQPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQTI 88
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVLKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTI 88
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P + L K +A+D S WI + E +S ++ F
Sbjct: 1 MGVNSLWDILGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDQEGNSMPQAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+ PIFV +G AP LK TI +R++ R G+ AR L
Sbjct: 61 RICKLLYFGIYPIFVFDGGAPALKRQTINQRRE---RREGKKESKEQTARKLL 110
>gi|425769594|gb|EKV08085.1| DNA excision repair protein Rad2 [Penicillium digitatum Pd1]
gi|425771041|gb|EKV09495.1| DNA excision repair protein Rad2 [Penicillium digitatum PHI26]
Length = 1130
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-------GRSAGR 153
R LL G++P+FV +G APV+K TI R++ + R+AG+
Sbjct: 61 RICKLLYFGIRPVFVFDGGAPVMKRQTIAGRKKKREGHREDAARTAGK 108
>gi|74197327|dbj|BAC30139.2| unnamed protein product [Mus musculus]
Length = 274
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 128 LEGKAPVLKHD-TIEKRQQAQG-RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGK 185
LEGK VL D +I Q +G R + NV + LF R LL ++PIFV +G
Sbjct: 22 LEGK--VLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGD 79
Query: 186 APVLKHDTIEKRQQ 199
AP+LK T+ KR+Q
Sbjct: 80 APLLKKQTLAKRRQ 93
>gi|354501934|ref|XP_003513043.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Cricetulus griseus]
Length = 1176
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + H + +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRRVSPEALEGKVLAVDISIWLNQALKGVRDRHGNPVENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW ++ P+ + ++ KT+AID S W+ +T+ + + N ++
Sbjct: 1 MGVKGLWKLVGPVGRPVLLETVEGKTMAIDSSIWLYQFQATMRDKDGRALVNAHILGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G AP +K TI +R++ + A + + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPAIKKATITERKKRKSGFAASHAKLAER 108
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 123 KPIFV--LEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIF 180
+P+ + +EGK + + QA R + R LL G+KP+F
Sbjct: 15 RPVLLETVEGKTMAIDSSIWLYQFQATMRDKDGRALVNAHILGFLRRICKLLFYGIKPVF 74
Query: 181 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
V +G AP +K TI +R++ + A + + R
Sbjct: 75 VFDGGAPAIKKATITERKKRKSGFAASHAKLAER 108
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G++P+FV +G AP LK TI+
Sbjct: 61 RICKLLWFGIRPVFVFDGGAPALKRQTIQ 89
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G APVLK TI
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPVLKRQTI 88
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G APVLK TI
Sbjct: 58 FFRRICKLLFFGIKPVFVFDGGAPVLKRQTI 88
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQTI 88
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLFFGIKPVFVFDGGAPILKRQTI 88
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQ-KNMYLRNLFF 112
MGV+ LW +L P+ R + L +K +AID S W+ + E+ +N +L F
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDENGDMVQNAHLIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
R LL L KPIFV +G P LK T+ +R+ AQ +
Sbjct: 61 RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTK 101
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM--YLRNLFFR 113
MGV+ LW +L I L K AID S W+ S +A S+ ++ + F R
Sbjct: 1 MGVQHLWDLLAAAGLPARIEALVGKKCAIDASFWL--SHCLASESNMRHGGDVIGVFFLR 58
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YLL G+KPIFV +GK PV K T+ KR+ Q +
Sbjct: 59 ICYLLEKGIKPIFVFDGKPPVAKRKTLIKRRLLQNK 94
Score = 45.1 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 154 NVQAGSRARNLFF-RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
N++ G +FF R YLL G+KPIFV +GK PV K T+ KR+ Q +
Sbjct: 44 NMRHGGDVIGVFFLRICYLLEKGIKPIFVFDGKPPVAKRKTLIKRRLLQNK 94
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog
gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana]
Length = 1479
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK-----NMYLRNL 110
MGV+ LW +L P+ R + L +K +AID S W+ I +K N +L
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMV--QFIKAMRDEKGDMVQNAHLIGF 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
F R LL L KPIFV +G P LK T+ +R+ AQ +
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTK 101
>gi|410912947|ref|XP_003969950.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Takifugu rubripes]
Length = 875
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + E +S +N +L L
Sbjct: 1 MGVHGLWRLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
F R LL +KP+FV +G+AP+LK T+ R+Q + + + Q + F +
Sbjct: 59 FHRICKLLFFRIKPVFVFDGEAPLLKKQTLALRRQRKEEMSRESKQTNEKLLRTFLK 115
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL +KP+FV +G+AP+LK T+ R+Q
Sbjct: 58 LFHRICKLLFFRIKPVFVFDGEAPLLKKQTLALRRQ 93
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFF 112
MGVK LW +L+P + + K++AID S WI +T+ + + N ++
Sbjct: 1 MGVKSLWSLLSPAGRPVMLETAEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+KP+FV +G AP LK TI +R++ + +A
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRMTIAERKKKKSGAA 99
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
R LL G+KP+FV +G AP LK TI +R++ + +A
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRMTIAERKKKKSGAA 99
>gi|400603046|gb|EJP70644.1| DNA excision repair protein [Beauveria bassiana ARSEF 2860]
Length = 1154
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEK 142
R LL G++P+FV +G AP LK TI+K
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQK 90
>gi|170036109|ref|XP_001845908.1| DNA-repair protein complementing XP-G cells [Culex
quinquefasciatus]
gi|167878599|gb|EDS41982.1| DNA-repair protein complementing XP-G cells [Culex
quinquefasciatus]
Length = 1217
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ + P+ L++K +A+D+S W + ++ S+ N ++ LF
Sbjct: 1 MGVTGLWKLVEQSGKPVPLETLENKVLAVDISIWLHQVTKGFQDSKGSALPNAHVLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R L+ ++P+FV +G P LK TI KR Q++ +
Sbjct: 61 RLCKLMYYRIRPVFVFDGGVPALKRQTIAKRNQSKSK 97
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQ--KNMYLRNLFF 112
MGV LW +L P+ R + L K +AID S W+ + + + +N +L F
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
R LL L KP+FV +G P LK T+ +R+ AQ +
Sbjct: 61 RICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAK 101
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +A+D S WI + +E +S ++ F
Sbjct: 1 MGVNSLWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDSEGNSLPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQAQGRS 150
R LL G+ PIFV +G AP LK +TI ++R++ QG++
Sbjct: 61 RICKLLYFGIFPIFVFDGGAPALKRETINQRRERRQGQA 99
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWQVLQPCARPTKLEMLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+KP+FV +G APVLK T++
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPVLKRATLQ 89
>gi|383863581|ref|XP_003707258.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Megachile rotundata]
Length = 1072
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH---SSQKNMYLRNLFF 112
MGV LW +L ++ P+ L+ K +AID+S WI + + + N +L LF+
Sbjct: 1 MGVYGLWRLLDKTGKQVPLETLEGKVLAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFY 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTS 169
R LL +KP+FV +G P+LK +TI R++ + + + Q + N + S
Sbjct: 61 RICKLLYYRIKPVFVFDGGVPMLKKNTIALRRKQKSMAKNKAQQMRTELINNLIKHS 117
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 124 PIFVLEGKAPVLK-----HDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
P+ LEGK + H ++ Q G N + + LF+R LL +KP
Sbjct: 18 PLETLEGKVLAIDISIWIHQVLQGYQDRFG-----NPKPNAHLIGLFYRICKLLYYRIKP 72
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARL 217
+FV +G P+LK +TI R++ +S +N R L
Sbjct: 73 VFVFDGGVPMLKKNTIALRRKQ--KSMAKNKAQQMRTEL 109
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWKIIGPTARPVRLEALSRKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G PVLK TI R+Q + +++
Sbjct: 61 RICKLLYFGILPIFVFDGGVPVLKKQTINNRRQRREKNS 99
Score = 39.7 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
R N S F R LL G+ PIFV +G PVLK TI R+Q + +++
Sbjct: 43 RDKDGNSLPSSHIIGFFRRICKLLYFGILPIFVFDGGVPVLKKQTINNRRQRREKNS 99
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|338715323|ref|XP_001494708.3| PREDICTED: DNA repair protein complementing XP-G cells [Equus
caballus]
Length = 1190
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRH 93
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRH 93
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQTI 88
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQTI 88
>gi|351703064|gb|EHB05983.1| DNA repair protein complementing XP-G cells [Heterocephalus glaber]
Length = 1026
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLEGSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|346321714|gb|EGX91313.1| DNA excision repair protein Rad2 [Cordyceps militaris CM01]
Length = 1162
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEK 142
R LL G++PIFV +G AP LK TI+K
Sbjct: 61 RICKLLWFGIQPIFVFDGGAPALKRATIQK 90
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|344284659|ref|XP_003414082.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Loxodonta africana]
Length = 1636
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEH--SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + + +H S +N +L LF
Sbjct: 434 MGVQGLWKLLECSGRQISPESLEGKILAVDISIWLNQALKGVRDHLGGSIENAHLLILFH 493
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 494 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 526
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 491 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 526
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G++P+FV +G AP LK TI+
Sbjct: 61 RICKLLWFGIRPVFVFDGGAPALKRQTIQ 89
>gi|336265442|ref|XP_003347492.1| Rad2 protein [Sordaria macrospora k-hell]
gi|380087974|emb|CCC05192.1| putative Rad2 protein [Sordaria macrospora k-hell]
Length = 1279
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+KP+FV +G AP LK TI+
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRATIQ 89
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVHGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G APVLK TI
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQTI 88
>gi|432852332|ref|XP_004067195.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oryzias latipes]
Length = 1078
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + E +S +N +L L
Sbjct: 1 MGVHGLWRLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G AP+LK T+ +R+Q
Sbjct: 59 FHRICKLLFFRIRPVFVFDGDAPLLKKQTLAQRRQ 93
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ +R+Q
Sbjct: 58 LFHRICKLLFFRIRPVFVFDGDAPLLKKQTLAQRRQ 93
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L + +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARLIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP+LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQTI 88
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
F R LL G+KP+FV +G AP+LK TI
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGAPILKRQTI 88
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTIVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL GVKP+FV +G AP LK T++
Sbjct: 61 RICKLLWHGVKPVFVFDGGAPALKRATLQ 89
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH---SSQKNMYLRNLFF 112
MGV LW +L ++ P+ L+ K +AID+S WI + + + N +L LF
Sbjct: 1 MGVYGLWRLLDATGKQVPLETLEGKILAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR-ARNLFFRTSYL 171
R LL +KP+FV +G P+LK +TI R++ + + + Q + NL ++
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKNTIALRRKQKSMAKNKAQQMRTELINNLIKHSTIK 120
Query: 172 LLLGVKPIFVLEGKAPVL 189
+L + G + V+
Sbjct: 121 AVLNTEKQVTTNGSSEVV 138
>gi|194389372|dbj|BAG61647.1| unnamed protein product [Homo sapiens]
Length = 736
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +A+D S WI + E ++ ++ ++ F
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALQSSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G++PIFV +G PVLK TI +R+ + + A
Sbjct: 61 RICKLLFFGIRPIFVFDGGVPVLKKQTIAERKNRRQQKA 99
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSS---QKNMYLRNLFF 112
MGV LW ++ P + +L+ +T+AID S WI + S +N +L F+
Sbjct: 41 MGVPKLWELVQPSGSYVELRDLEGQTLAIDASIWIHSFIRAFKDSRGDPAENAHLLGFFW 100
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL +KPIFV +G P LK TI +R++ + S
Sbjct: 101 RICKLLQHRIKPIFVFDGNIPYLKQRTINERRKRRENS 138
>gi|298711922|emb|CBJ48609.1| DNA repair enzyme [Ectocarpus siliculosus]
Length = 1835
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MG+K+LW +L+P+ I L KT+A+D+S W+ + + KN ++
Sbjct: 1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 156
R LL ++P+FV +G AP LK T+ R++ + +V+
Sbjct: 61 RVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRSEGTDSSVR 104
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MG+K+LW +L+P+ I L KT+A+D+S W+
Sbjct: 1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWL 35
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1143
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTI 88
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +A+D S WI + E ++ ++ F
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G++PIFV +G PVLK TI +R+ + +++ QA +
Sbjct: 61 RICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRQAAQK 108
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 24/133 (18%)
Query: 56 MGVKDLWGILTPIC-ERKPIWELQDKTIAIDLSAWICD--------------------SS 94
MGVK LW +L P + + + L KT+A+D+S W+ ++
Sbjct: 1 MGVKGLWDLLRPAAFQVQSLDVLSGKTVAVDISVWLHQFMLGMGLEDHDDEFFFGRGANN 60
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
+ S + YL+ LF R LL +KPIF+ +G P++K TI+KR+ RS N
Sbjct: 61 QTGQASFSQVRYLKALFKRICKLLYYDIKPIFIFDGATPLVKQKTIQKRRM---RSTKHN 117
Query: 155 VQAGSRARNLFFR 167
+ A+ L R
Sbjct: 118 FRLKKVAKKLLNR 130
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTI 88
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G+KP+FV +G AP LK TI
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTI 88
>gi|291393206|ref|XP_002713064.1| PREDICTED: XPG-complementing protein isoform 1 [Oryctolagus
cuniculus]
Length = 1188
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|291393208|ref|XP_002713065.1| PREDICTED: XPG-complementing protein isoform 2 [Oryctolagus
cuniculus]
Length = 1203
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|322795199|gb|EFZ18021.1| hypothetical protein SINV_07188 [Solenopsis invicta]
Length = 231
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQK-NMYLRNLFF 112
MGV LW +L + P+ L+ K +AID+S WI H + + N +L LF
Sbjct: 1 MGVYGLWKLLEASGKPVPLESLEGKVLAIDVSIWIYQILQGYQDRHGTPRPNAHLLGLFT 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL +KP+FV +G P+LK +TI ++Q++ S + ++A
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKNTIALRRKQKSIATSKAQKMKA 107
>gi|229577369|ref|NP_001153363.1| mutagen-sensitive 201 [Nasonia vitripennis]
Length = 1167
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK-----NMYLRNL 110
MGV LW +L + P+ L+ K +AID+S WI I + ++ N +L L
Sbjct: 1 MGVLGLWRLLDATGKPVPLETLEGKVLAIDISIWI--HQVIQGYQDRRGNALPNAHLIGL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
F R L+ +KP+FV +G P+LK +TI R++ + +A +
Sbjct: 59 FNRICKLMYFKIKPVFVFDGGVPLLKKNTIATRRKLKSIAASK 101
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 124 PIFVLEGKAPVLK-----HDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKP 178
P+ LEGK + H I+ Q +G N + LF R L+ +KP
Sbjct: 18 PLETLEGKVLAIDISIWIHQVIQGYQDRRG-----NALPNAHLIGLFNRICKLMYFKIKP 72
Query: 179 IFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
+FV +G P+LK +TI R++ + +A +
Sbjct: 73 VFVFDGGVPLLKKNTIATRRKLKSIAASK 101
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVTGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G++P+FV +G AP+LK TI+
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPILKRQTIQ 89
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + + L+ K +AID+S W+ + + N +L LF
Sbjct: 1 MGVVGLWQLLDPTGKPIRLETLEGKVLAIDISIWLNQLIKGYRTSGGAGVDNAHLVGLFQ 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGR 153
R LL +KP+FV +G+AP LK+ T+ KR++ G A R
Sbjct: 61 RVCKLLHYKIKPVFVFDGEAPALKYQTLASRKRRREDGNEAIR 103
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGR 207
LF R LL +KP+FV +G+AP LK+ T+ KR++ G A R
Sbjct: 58 LFQRVCKLLHYKIKPVFVFDGEAPALKYQTLASRKRRREDGNEAIR 103
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST---IAEHSSQKNMYLRNLFF 112
MGV LW ++ + + L++K +A+D+S W+ + A+ S N +L L
Sbjct: 4 MGVHGLWQVVEAAGKPIALETLENKVLAVDVSLWLHQAVKGFRDAQGSPVANAHLLGLLQ 63
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSY 170
R LL GVKP+FV +G P LK T+ RQ+ R A +AR L + +
Sbjct: 64 RVCKLLFYGVKPVFVFDGGVPQLKKQTLAARQE---RRTTAQESAQRKARLLLLKARH 118
>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Meleagris gallopavo]
Length = 1121
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPINPEILEGKILAVDISIWLNQAIKGVRDRHGNTIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRH 93
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 58 LFNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRH 93
>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
Length = 1118
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRH 93
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 58 LFNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRH 93
>gi|312285668|gb|ADQ64524.1| hypothetical protein [Bactrocera oleae]
Length = 232
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P P+ L K +AID+S W + ++ S + +L LF
Sbjct: 1 MGVTGLWKLVEPCGSPVPVETLDGKILAIDISIWLHQVIKGFQDSKGSLLPHAHLLGLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR--QQAQGRSAGRNVQA 157
R LL ++P+FV +G P LK DTI +R Q+ + + +QA
Sbjct: 61 RLCKLLYYRIRPVFVFDGLVPQLKRDTIARRHHQRVKINNEANRIQA 107
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYL 107
MGV+ LW +L P+ R + L K +AID S W+ D + +N +L
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDDRGEMV-----RNAHL 55
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
F R LL L KP+FV +G P LK T+ +R+ AQ +
Sbjct: 56 LGFFRRICKLLFLRTKPVFVFDGATPALKRRTLIARRRQRENAQAK 101
>gi|300120756|emb|CBK20998.2| unnamed protein product [Blastocystis hominis]
Length = 126
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MG+++ W ++ P I ++ K +A+D+S W I + + N ++ + F
Sbjct: 1 MGIQNFWTLIEPSGRNVSIECMRGKRLAVDISIWLHQIIHAMRTPTGETVPNAHIYIVIF 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R L+ G+KP+ V +G AP LK T+++R++ R+
Sbjct: 61 RLCKLIFYGIKPVIVFDGDAPALKKQTLKRRREKAERA 98
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ FR L+ G+KP+ V +G AP LK T+++R++ R+
Sbjct: 58 VIFRLCKLIFYGIKPVIVFDGDAPALKKQTLKRRREKAERA 98
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW +L P R L+ K +A+D + W+ + + + S +L F
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHLVGFFN 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL ++PI V +G P LK T+ KRQ+ Q R+V A
Sbjct: 61 RLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQRQQQEKNLRSVVA 107
>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
Length = 1108
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC-------DSSTIAEHSSQKNMYLR 108
MGVK LW +L P R I L + +A+D S W+ D H++ L
Sbjct: 1 MGVKGLWNLLEPTGRRVDITALAGQRVAVDASIWLVQFIKAMRDERGDMIHNAHLLGSLF 60
Query: 109 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ F R +L G+ P+FV +G P LK T+ R+Q
Sbjct: 61 SFFRRICRMLYHGISPVFVFDGATPTLKRHTVASRRQ 97
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW +L P R L+ K +A+D + W+ + + + S +L F
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHLVGFFN 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL ++PI V +G P LK T+ KRQ+ Q R+V A
Sbjct: 61 RLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQRQQQEKNLRSVVA 107
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW +L P R L+ K +A+D + W+ + + + S +L F
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHLVGFFN 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL ++PI V +G P LK T+ KRQ+ Q R+V A
Sbjct: 61 RLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQRQQQEKNLRSVVA 107
>gi|424513647|emb|CCO66269.1| DNA excision repair protein Rad2 [Bathycoccus prasinos]
Length = 1311
Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVKDLW IL P ER + L KTIA+D S W+ + N ++
Sbjct: 1 MGVKDLWTILEPSAERVNLDALTGKTIAVDASIWMMQFLKAMRDDRGEPIANAHILGFLK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL L V P+FV +GK P +K + +R++
Sbjct: 61 RIIKLLHLRVFPVFVFDGKTPGIKRACVRERKR 93
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL GVKP+FV +G AP LK T++
Sbjct: 61 RLCKLLWYGVKPVFVFDGGAPALKRATLQ 89
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
R N S F R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 43 RDKDGNSLPSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
R N S F R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 43 RDKDGNSLPSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
Length = 866
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + E +S +N +L L
Sbjct: 1 MGVHGLWRLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G+AP+LK T+ R+Q
Sbjct: 59 FHRICKLLFFRIRPVFVFDGEAPLLKKQTLALRRQ 93
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G+AP+LK T+ R+Q
Sbjct: 58 LFHRICKLLFFRIRPVFVFDGEAPLLKKQTLALRRQ 93
>gi|340376739|ref|XP_003386889.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Amphimedon queenslandica]
Length = 739
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA-EHSSQK--NMYLRNLFF 112
MGVKDLW IL P L+ + +A+D+S W+ + A +H + +L LF
Sbjct: 1 MGVKDLWKILEPSGRAINPETLKGQILAVDVSIWLNQAIKGARDHHGNEIPKPHLLVLFN 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE----KRQQAQGRSAGRNVQAGSR 160
R LL ++P+FV +G P LK T+E KR++A G++AG + SR
Sbjct: 61 RICKLLFYQIRPVFVFDGPPPPLKTKTLELRRRKRKEA-GKAAGELMDKRSR 111
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE----KRQQAQGRSAGRNVQAGSRARLKG 219
LF R LL ++P+FV +G P LK T+E KR++A G++AG + SR L+
Sbjct: 58 LFNRICKLLFYQIRPVFVFDGPPPPLKTKTLELRRRKRKEA-GKAAGELMDKRSRKLLEA 116
>gi|405975699|gb|EKC40248.1| DNA repair protein complementing XP-G cells-like protein
[Crassostrea gigas]
Length = 1005
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV LW +L P + L+ K +A+D+S W+ D S I+ N +
Sbjct: 1 MGVHGLWHLLQPTGRPVSLQSLEGKVLAVDVSIWLHQAVKGMRNKDGSPIS------NAH 54
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L LF R LL +KP+FV +G+ P LK T+ R++
Sbjct: 55 LHVLFTRVCKLLYYKIKPVFVFDGRVPELKKQTMASRRE 93
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW +L P R L+ K +A+D + W+ + + + S +L F
Sbjct: 1 MGVKGLWDLLAPAGRRVAAGNLKGKIVAVDAAIWLVQFLHAMKLPDGSPMPAAHLVGFFN 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI--EKRQQAQGRSAGRNVQA 157
R LL ++PI V +G P LK T+ KRQ+ Q R+V A
Sbjct: 61 RLCRLLFFEIRPIIVFDGPPPFLKRQTLLARKRQRQQQEKNLRSVVA 107
>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Nomascus leucogenys]
Length = 1189
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEHSSQ-KNMYLRNLFF 112
MGV+ LW +L + L+ K +AID+S W+ + H +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAIDISIWLNQALKGVRDRHGDPIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>gi|116180814|ref|XP_001220256.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
gi|88185332|gb|EAQ92800.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
Length = 1765
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW + P + L K +AID S WI + E ++ +N ++ F
Sbjct: 1 MGVQGLWTVAQPCARPTNLSTLNQKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL GVKP+FV +G AP LK T++
Sbjct: 61 RICKLLWHGVKPVFVFDGGAPALKRATLQ 89
>gi|426375915|ref|XP_004054761.1| PREDICTED: DNA repair protein complementing XP-G cells [Gorilla
gorilla gorilla]
Length = 1186
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + + K +A+D S WI + + + N ++ F
Sbjct: 1 MGVHGLWEIVGPTARPVRLEAMAKKRLAVDASIWIYQFLKAVRDVQGNQLINSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
R LL G+KP+FV +G AP+LK TI KR++ + S Q R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPLLKKQTISKRREKREGSKETAEQVARR 108
>gi|242019297|ref|XP_002430098.1| DNA excision repair protein, putative [Pediculus humanus corporis]
gi|212515179|gb|EEB17360.1| DNA excision repair protein, putative [Pediculus humanus corporis]
Length = 1052
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMY--------- 106
MGV LW +L P + P+ L K +A+D+S W+ H + K M+
Sbjct: 1 MGVHGLWKLLEPSGQMVPLECLAGKVLAVDVSIWL--------HQAIKGMHDTYGAPVAA 52
Query: 107 --LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 148
+ L R LL +KP+FV +G P LKH T+ R+ G
Sbjct: 53 AHIIILLHRLCKLLFYKIKPVFVFDGGVPALKHSTMAARKNQTG 96
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +A+D S WI + ++ +S ++ F
Sbjct: 1 MGVNSLWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQAQGRS 150
R LL G+ P+FV +G AP LK TI ++R++ QG++
Sbjct: 61 RICKLLYFGILPVFVFDGGAPALKRQTILKRRERRQGKT 99
>gi|9587153|gb|AAF89178.1| xeroderma pigmentosum complementation group G protein splice
variant [Homo sapiens]
Length = 232
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 57 TLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +A+D S WI + ++ +S ++ F
Sbjct: 1 MGVNSLWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQAQGRS 150
R LL G+ P+FV +G AP LK TI ++R++ QG++
Sbjct: 61 RICKLLYFGILPVFVFDGGAPALKRQTILKRRERRQGKT 99
>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
Length = 1187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|410947676|ref|XP_003980569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Felis catus]
Length = 1128
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDRHGNSIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ +R+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVRRRQ 93
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ +R+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVRRRQ 93
>gi|51988900|ref|NP_000114.2| DNA repair protein complementing XP-G cells [Homo sapiens]
gi|21619256|gb|AAH31522.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|24079971|gb|AAN46091.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|61364768|gb|AAX42600.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
gi|123981830|gb|ABM82744.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
gi|123996661|gb|ABM85932.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|298111|emb|CAA49598.1| XP-G factor [Homo sapiens]
gi|119629476|gb|EAX09071.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)), isoform
CRA_a [Homo sapiens]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|33187721|gb|AAP97715.1|AF462447_1 excision repair protein ERCC5 [Homo sapiens]
gi|306742|gb|AAC37533.1| excision repair protein [Homo sapiens]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|205371791|sp|P28715.3|ERCC5_HUMAN RecName: Full=DNA repair protein complementing XP-G cells; AltName:
Full=DNA excision repair protein ERCC-5; AltName:
Full=Xeroderma pigmentosum group G-complementing protein
gi|9587154|gb|AAF89179.1| xeroderma pigmentosum complementation group G protein splice
variant [Homo sapiens]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|410215558|gb|JAA04998.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410261564|gb|JAA18748.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410301776|gb|JAA29488.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410335601|gb|JAA36747.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Pan troglodytes]
Length = 1186
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQ--KNMYLRNLFF 112
MGV LW +L P+ R + L K +AID S W+ + + + +N +L F
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHLLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
R LL L KP+FV +G P LK T+ +R+ AQ +
Sbjct: 61 RICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAK 101
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G+ P+FV +G AP LK T++
Sbjct: 61 RVCKLLWFGILPVFVFDGGAPALKRSTLQ 89
>gi|359322522|ref|XP_003639860.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Canis
lupus familiaris]
Length = 1185
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGV LW +L + L+ K +A+D+S W+ C ++I N +
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDCHGNSIG------NAH 54
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
L LF R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 55 LLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAA 99
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
LF R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAA 99
>gi|281350378|gb|EFB25962.1| hypothetical protein PANDA_002828 [Ailuropoda melanoleuca]
Length = 1192
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGV LW +L + L+ K +A+D+S W+ C ++I +N +
Sbjct: 1 MGVHGLWKLLECSGRQVNPETLEGKILAVDISIWLNQALRGVRDCHGNSI------ENAH 54
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L LF R LL ++PIFV +G AP+LK T+ KR+
Sbjct: 55 LLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRH 93
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRH 93
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFF 112
MGVK LW +L P+ + + LQ K +A+D S + + S N +L LF
Sbjct: 1 MGVKGLWQLLEPVGKPVTLESLQGKVLAVDASILMNQAIKGMRDGSGNPVPNAHLFVLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL VKP+FV +G PVLK T+
Sbjct: 61 RLCKLLFYRVKPVFVFDGGVPVLKKKTL 88
>gi|401828649|ref|XP_003888038.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999112|gb|AFM99057.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
Length = 564
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF--R 113
MGV+ LW IL P ER ++ +A+D S WIC + S +Y FF R
Sbjct: 1 MGVRSLWRILKPSAERVVPSGIR---LAVDTSIWICQYGHLG---SDDIVY----FFSKR 50
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLL 173
LL G++P+FV +G+AP +K I +R++ RS+ V R R R
Sbjct: 51 VIKLLYHGIQPVFVFDGRAPEIKRQAILERRKRSNRSSIVAVDRMLRGR----RDEEKGH 106
Query: 174 LGVKPIFVLEGK 185
G KP+ EG+
Sbjct: 107 DGHKPVIFGEGR 118
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + + L K +A+D S WI + AE ++ ++ F
Sbjct: 1 MGVNSLWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDAEGNALPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+ P+FV +G AP+LK TI R+
Sbjct: 61 RICKLLYYGIMPVFVFDGGAPILKKQTIADRR 92
>gi|430813616|emb|CCJ29055.1| unnamed protein product, partial [Pneumocystis jirovecii]
gi|430814535|emb|CCJ28245.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 126
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW IL + + L K +A+D S WI + E + N ++ F
Sbjct: 1 MGVNKLWTILEEVSRLVKLETLSGKILAVDASIWIYQFFKAFRDKEGNYISNGHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R LL GVKP+FV +G P LK ++KR + +
Sbjct: 61 RICKLLFFGVKPVFVFDGNVPFLKQCVMKKRAEKR 95
>gi|449016220|dbj|BAM79622.1| probable flap structure-specific endonuclease 1 [Cyanidioschyzon
merolae strain 10D]
Length = 380
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG++ L ++ R + I L + IAID S I D++ + S +
Sbjct: 1 MGIRQLAKLIVDHAPRAYKEQDIRALFGRVIAIDASMCIYQFLVAVRTADAANLTNESGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT LL LG+KPI+V +GKAP LK + + KR+ + + QA ++AR
Sbjct: 61 ITSHLSGVFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRR----EEDEQAAAKAR 116
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKG 219
+F+RT LL LG+KPI+V +GKAP LK + + KR+ + + QA ++AR +G
Sbjct: 68 VFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRR----EEDEQAAAKAREEG 119
>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
Length = 1532
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV+ LW +L P+ I L+ K +AID S W+ D T++ N +
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKDGRTLS------NAH 54
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+ +R LL GV+P+FV +G AP +K T+ R+
Sbjct: 55 ILGFLWRILKLLFHGVRPVFVFDGGAPAMKRKTLSGRK 92
>gi|348516587|ref|XP_003445820.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oreochromis niloticus]
Length = 1119
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + E +S N +L L
Sbjct: 1 MGVHGLWRLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVHNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++P+FV +G AP+LK T+ R+Q
Sbjct: 59 FHRICKLLFFRIRPVFVFDGDAPLLKKQTLALRRQ 93
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ R+Q
Sbjct: 58 LFHRICKLLFFRIRPVFVFDGDAPLLKKQTLALRRQ 93
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L P + L K +A+D S WI + E ++ ++ ++ F
Sbjct: 1 MGVNGLWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
R LL G++P+FV +G AP+LK T++
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPILKRATLQ 89
>gi|440901361|gb|ELR52322.1| DNA repair protein complementing XP-G cells [Bos grunniens mutus]
Length = 1202
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNL 110
MGV+ LW +L C + I L+ K +A+D+S W+ + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
F R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
LF R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
>gi|426236893|ref|XP_004012399.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Ovis aries]
Length = 1200
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNL 110
MGV+ LW +L C + I L+ K +A+D+S W+ + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
F R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
LF R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
>gi|78369362|ref|NP_001030353.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|77567831|gb|AAI07529.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|296481618|tpg|DAA23733.1| TPA: XPG-complementing protein [Bos taurus]
Length = 1201
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNL 110
MGV+ LW +L C + I L+ K +A+D+S W+ + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
F R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
LF R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +A+D S WI + E ++ ++ F
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G++PIFV +G PVLK TI +R+
Sbjct: 61 RICKLLYFGIQPIFVFDGGVPVLKRQTINERK 92
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGVK LW IL + + L +AID+S W+ + AE + +N +L LF
Sbjct: 52 MGVKGLWTILDAAGQSVNLDTLASHVLAIDVSIWLNQHMKAMRDAEGNVIRNAHLIGLFR 111
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL G+KP+FV +G P LK T+ R+
Sbjct: 112 RLCKLLYYGIKPLFVYDGGVPALKRRTLAGRRH 144
>gi|396082166|gb|AFN83777.1| Rad2 [Encephalitozoon romaleae SJ-2008]
Length = 559
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF--R 113
MGV+ LW IL P ER ++ +A+D S WIC + S +Y FF R
Sbjct: 1 MGVRSLWKILKPSAERVTPSGIR---LAVDTSIWICQYGHLR---SDDIVY----FFSKR 50
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ LL G+KPIFV +GKAP +K I +R++
Sbjct: 51 IAKLLYHGIKPIFVFDGKAPEIKRQAILERRR 82
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 54 AIMGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWIC---------DSSTIAEHSSQK 103
I G+ L G P C ++ +E + IA+D S I + + +
Sbjct: 2 GIQGLTKLLGDAAPGCMKEQKFENYFGRKIAVDASMHIYAFLVVVGRQGDQMLTSETGEV 61
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L+ +FFRT +L G+KP+FV EGKAP LK + + KR + A ++A A N
Sbjct: 62 TSHLQGMFFRTVRMLEAGMKPVFVFEGKAPELKREELAKRSNRR-EDANTELEAAKEAGN 120
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S + +FFRT +L G+KP+FV EGKAP LK + + KR
Sbjct: 63 SHLQGMFFRTVRMLEAGMKPVFVFEGKAPELKREELAKR 101
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G AP LK TI
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATI 88
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 56 MGVKDLWGILTP----ICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K+L +L C+ + + + +A+D S I T+ S
Sbjct: 1 MGIKNLTKLLGDHAPGCCKEQKVENYFGRKVAVDASMHIYQFLVVVGRTGDQTLTSESGD 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 148
+L+ +FFRT+ +L +G+KP++V +GK P LK + + +R + +G
Sbjct: 61 VTSHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRG 106
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
S + +FFRT+ +L +G+KP++V +GK P LK + + +R + +G
Sbjct: 63 SHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRG 106
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + + L K +A+D S WI + E ++ ++ F
Sbjct: 1 MGVNSLWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDGEGNALPQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+ P+FV +G APVLK TI R+
Sbjct: 61 RICKLLYYGIMPVFVFDGGAPVLKKQTIADRR 92
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW ++ P + L K +A+D S WI + E ++ +N ++ F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL G++P+FV +G AP LK TI
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATI 88
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +A+D S WI + E +S + ++ F
Sbjct: 1 MGVHSLWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G PVLK +TI R+ + + A
Sbjct: 61 RICKLLYFGILPIFVFDGGVPVLKRETINARKNRRLKKA 99
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWI---------CDSSTIAEHSSQKN 104
MGVK I E + I EL KTIAID WI D S + + +
Sbjct: 1 MGVK-----FNGIFEGRSIKMQELSGKTIAIDAFNWIFQFLTTIRLADGSYLTDSKGRVT 55
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L +F+R +L G+ P+FV +GKAP K +T+++R+
Sbjct: 56 THLNGIFYRCISMLENGINPVFVFDGKAPRFKKETLKERE 95
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
+F+R +L G+ P+FV +GKAP K +T+++R+
Sbjct: 61 IFYRCISMLENGINPVFVFDGKAPRFKKETLKERE 95
>gi|219121896|ref|XP_002181293.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407279|gb|EEC47216.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 696
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 81 TIAIDLSAWICDS-STIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDT 139
T+A+DLS WIC+S ++ A + N L +F RT LL LG+K IFVLEGK V T
Sbjct: 64 TLAVDLSIWICESLTSRAMTENHANPALHLVFSRTMKLLSLGIKLIFVLEGKRRV---QT 120
Query: 140 IEKRQQAQGRSAGRNV-QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
KR + R +G +AG + +L R LG+ P+F + + L
Sbjct: 121 AGKRDNFRNRRSGTTFWKAGEQCHDLLTR------LGI-PVFRAKAEGEAL 164
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 56 MGVKD-LWGILTPI-CERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFR 113
MGV W ++ P+ + + LQDK +AIDLS WI + + ++K +LR LFFR
Sbjct: 1 MGVGGGFWELIKPLRHSSEDLSTLQDKRLAIDLSHWIVQQEAVLKDRARKP-HLRLLFFR 59
Query: 114 TSYL---LLLGVKPIFVLEGKAPVLKHDT-IEKRQQAQGRSAGRNVQAGSRARNLFF 166
L L +G P+FV++G AP+LK IE+ + G A + + G RN F
Sbjct: 60 VVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRFSGIPAAQ-LNGGDNHRNRAF 115
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MGVK LW I++P+ R K IAID+S W+ + + +N + D
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYELTYANNVKDLRNKSFDNMSIFND 60
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
LW ID S I SS I + +K +L F R LL
Sbjct: 61 LW---------------------IDFSENI--SSEIKTDNIKK-AHLYFFFLRICKLLYY 96
Query: 121 GVKPIFVLEGKAPVLKHDTIEKR 143
++PIF+ +G P LK TI +R
Sbjct: 97 NIRPIFIFDGNPPELKRKTIFQR 119
>gi|61403387|gb|AAH91993.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [Danio
rerio]
gi|182891882|gb|AAI65440.1| Ercc5 protein [Danio rerio]
Length = 249
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSST---IAEHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + + ++ +N +L L
Sbjct: 1 MGVHGLWKLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
F R LL ++P+FV +G AP+LK T+ R+Q + + + Q + F +
Sbjct: 59 FHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKLLQTFLK 115
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ R+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQ 93
>gi|307106788|gb|EFN55033.1| hypothetical protein CHLNCDRAFT_15549, partial [Chlorella
variabilis]
Length = 87
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEHSSQ--KNMYLRNLFF 112
MGV+ LW +L P+ R I L++K +A+D S W+ + + + +N ++ F
Sbjct: 1 MGVRGLWPLLEPVGRRISIEALRNKRLAVDASIWLFQFIQAMRDERGELIRNAHVLGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDT 139
R + LL ++P+FV +G P LK T
Sbjct: 61 RITKLLYHRIRPVFVFDGATPALKKQT 87
>gi|218200332|gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ S+ + ++ +YL+NLF R
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFV 127
LL L +FV
Sbjct: 61 IRALLALNCTLLFV 74
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGVK+LW IL ++ P+ LQ+K + +DLS W+
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWL 35
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ--KNMYLRNLFFR 113
MGV +LW +L I L+ +AID+S W+ +S +N++L + R
Sbjct: 1 MGVYNLWKLLAAAGRNIDIASLRGLRVAIDVSIWMIKLLHGMSNSGVNFENVHLIGILKR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+LL G+KP+FV +G AP LK T+ KR Q +
Sbjct: 61 IMFLLENGIKPVFVFDGPAPELKRQTLIKRAQQR 94
Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
R +LL G+KP+FV +G AP LK T+ KR Q +
Sbjct: 60 RIMFLLENGIKPVFVFDGPAPELKRQTLIKRAQQR 94
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 56 MGVKD-LWGILTPI-CERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFR 113
MGV W ++ P+ + LQDK +AIDLS WI + + ++K +LR LFFR
Sbjct: 1 MGVGGGFWELVKPLRHSSDDLSTLQDKRLAIDLSHWIVQQEAVLKDRARKP-HLRLLFFR 59
Query: 114 TSYL---LLLGVKPIFVLEGKAPVLKHDT-IEKRQQAQGRSAGRNVQAGSRARNLFF 166
L L +G P+FV++G AP+LK IE+ + G A + + G RN F
Sbjct: 60 VVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRLSGIPAAQ-LNGGDNHRNRAF 115
>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Danio rerio]
Length = 1022
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSST---IAEHSSQKNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + + ++ +N +L L
Sbjct: 1 MGVHGLWKLLESTG--KPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
F R LL ++P+FV +G AP+LK T+ R+Q + + + Q + F +
Sbjct: 59 FHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKLLQTFLK 115
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ R+Q
Sbjct: 58 LFHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQ 93
>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Komagataella pastoris
CBS 7435]
Length = 1043
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC-------DSSTIAEHSSQKNMYLR 108
MGV LW +L P + L K +A+D S WI D A SS ++
Sbjct: 1 MGVHQLWNVLGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGRAFASS----HIV 56
Query: 109 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
F R LL G++P+FV +G AP+LK TI
Sbjct: 57 GFFKRICKLLFFGIEPVFVFDGGAPILKRKTI 88
>gi|358060342|dbj|GAA93747.1| hypothetical protein E5Q_00393 [Mixia osmundae IAM 14324]
Length = 1209
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P+ + L +K +A+D S W+ + E + N ++
Sbjct: 1 MGVHGLWPIIQPVARPIALETLGNKRMAVDSSIWLHQFQLAMRDKEGRALDNAHILGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL G+KP+FV +G APV+K + +R++
Sbjct: 61 RICKLLYYGIKPVFVFDGGAPVIKRIAVSERKR 93
>gi|384249048|gb|EIE22530.1| hypothetical protein COCSUDRAFT_9431, partial [Coccomyxa
subellipsoidea C-169]
Length = 116
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV+ LW +L P+ R I L +K +A+D S WI + A+ +N +L
Sbjct: 1 MGVQGLWVLLEPVGRRVNIEALTNKRLAVDASIWIYQFMQTMRDAQGEMLRNAHLVGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLK 136
R LL V+PIFV +G P LK
Sbjct: 61 RICRLLFHRVRPIFVFDGATPPLK 84
>gi|348681508|gb|EGZ21324.1| hypothetical protein PHYSODRAFT_460533 [Phytophthora sojae]
Length = 305
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV++LW +L P+ + I L + +A+D S W+ + E + +N +L
Sbjct: 1 MGVQNLWVLLAPVGRQIEIESLAGQVLAVDASIWLTQFVKAMRDDEGNMIRNAHLLGTLH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAP 133
R + LL GV+P+FV +G+ P
Sbjct: 61 RVAKLLYYGVRPVFVFDGQTP 81
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
RNLFFRT+ LL G+ PI++LEGKAP LK ++KR++A+
Sbjct: 1 RNLFFRTASLLENGIDPIYILEGKAPELKAQVMQKRREAR 40
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
RNLFFRT+ LL G+ PI++LEGKAP LK ++KR++A+
Sbjct: 1 RNLFFRTASLLENGIDPIYILEGKAPELKAQVMQKRREAR 40
>gi|301121668|ref|XP_002908561.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103592|gb|EEY61644.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 329
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV++LW +L P+ + I L + +A+D S W+ + E + +N +L
Sbjct: 1 MGVQNLWVLLAPVGRQIEIESLAGQVLAVDASIWLTQFVKAMRDDEGNMIRNAHLMGTLH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAP 133
R + LL GV+P+FV +G+ P
Sbjct: 61 RVAKLLYYGVRPVFVFDGQTP 81
>gi|417406083|gb|JAA49718.1| Putative 5'-3' exonuclease [Desmodus rotundus]
Length = 1189
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNL 110
MGV+ LW +L C + I L+ K +A+D+S W+ + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G P+LK T+ KR+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDTPLLKKQTLAKRRH 93
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G P+LK T+ KR+
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDTPLLKKQTLAKRRH 93
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFFRTSYL 117
LW ++TP+ + + +K +AID S W+ E N ++ R S L
Sbjct: 2 LWTLITPVARPIKLETMGNKKLAIDSSIWLYQFQNAMRDREGRGLTNAHILGFLRRISKL 61
Query: 118 LLLGVKPIFVLEGKAPVLKHDTI 140
L G+KP+FV +G APVLK TI
Sbjct: 62 LYYGIKPVFVFDGGAPVLKKQTI 84
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 194
R S LL G+KP+FV +G APVLK TI
Sbjct: 57 RISKLLYYGIKPVFVFDGGAPVLKKQTI 84
>gi|303607|dbj|BAA03812.1| ERCC5 [Homo sapiens]
Length = 1185
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N + LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHPLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>gi|71745604|ref|XP_827432.1| DNA repair protein RAD2 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831597|gb|EAN77102.1| DNA repair protein RAD2, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 746
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L E + + K +AID S WI S+ S + L F R
Sbjct: 1 MGVHGLWRLLDTFGEVTQPADWKGKRVAIDASIWIAQFRSSCEPGESVEERILEGFFMRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
LL G++PIFV +G + + K E+R++AQ R A AR L
Sbjct: 61 LKLLFYGIEPIFVFDGPSTMSKR--AEQRRRAQHREALEQAMVTRHARRL 108
>gi|388583607|gb|EIM23908.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 1046
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW +L P+ + L K +AID S W+ + + + N ++
Sbjct: 1 MGVKGLWQLLQPVARPVKLEMLGGKRVAIDSSIWLYHFLRAIKDKQGHTLTNAHILGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQAQG 148
R LL G+KP+FV +G AP LK TI E++ + QG
Sbjct: 61 RILKLLFYGLKPVFVFDGGAPRLKKTTISERKNRRQG 97
>gi|261331631|emb|CBH14625.1| DNA repair protein RAD2, putative [Trypanosoma brucei gambiense
DAL972]
Length = 746
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L E + + K +AID S WI S+ S + L F R
Sbjct: 1 MGVHGLWRLLDTFGEVTQPADWKGKRVAIDASIWIAQFRSSCEPGESVEERILEGFFMRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
LL G++PIFV +G + + K E+R++AQ R A AR L
Sbjct: 61 LKLLFYGIEPIFVFDGPSTMSKR--AEQRRRAQHREALERAMVTRHARRL 108
>gi|402588539|gb|EJW82472.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 604
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST-IAEHS-SQKNMYLRNLFFR 113
MG++ LW +L P+ E + L+ K +AID+S W+ ++ +EH + K +L + R
Sbjct: 6 MGIQGLWQVLEPVAEPVTLESLEGKRLAIDISIWLHQAAYGYSEHQLNAKYPHLSLVLRR 65
Query: 114 TSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQ 144
+ LL ++PIFV +G P+ K + RQ
Sbjct: 66 LAKLLFYKIRPIFVFDGPNVPIFKKKLLRDRQ 97
>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
Length = 1139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEH-SSQKNMYLRNLFF 112
MGV LW +L + + L+ K +AID+S WI +H +S+ N +L L+
Sbjct: 1 MGVYGLWRLLDASGKPVVLENLEGKVLAIDVSIWIYQVLQGYQNQHGASKPNAHLLGLYT 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL +KP+FV +G P+LK +TI R++
Sbjct: 61 RICKLLYYRIKPVFVFDGGVPMLKKNTIASRRK 93
>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
Length = 1489
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYL 107
MGV LW +L P+ R + L K +A+D S W+ DS + ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRVAVDASIWMVQFMRAMRDDSGEMV-----RDAHL 55
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L V+P+FV +G P LK T+
Sbjct: 56 LGFLRRICKLLFLRVRPVFVFDGATPALKRRTL 88
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays]
Length = 1531
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYL 107
MGV LW +L P+ R + L K +A+D S W+ DS + ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRVAVDASIWMVQFMRAMRDDSGEMV-----RDAHL 55
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L V+P+FV +G P LK T+
Sbjct: 56 LGFLRRICKLLFLRVRPVFVFDGATPALKRRTL 88
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM--YLRNLFFR 113
MGV +LW +L+ + L K AID S WI S +A S+ ++ + F R
Sbjct: 1 MGVHNLWDLLSATALPLRVESLFGKVCAIDGSFWI--SHCLASESNMRHGGDIVAVFFLR 58
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
YLL G+KP+FV +G +P K T+ +R+ A+
Sbjct: 59 ICYLLDRGIKPVFVFDGCSPFAKMKTLLRRKIAR 92
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW +LT + L K ID S WI S +I H + F
Sbjct: 1 MGVHKLWDLLTATALPVRVESLFGKVCCIDASFWIIHCMASESINRHGGD---VIAVFFL 57
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
R YLL G++P+FV +GK+P K TI KR+ +
Sbjct: 58 RICYLLDKGIRPVFVFDGKSPFAKIKTIIKRKMINNK 94
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 150 SAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
S N G F R YLL G++P+FV +GK+P K TI KR+ +
Sbjct: 41 SESINRHGGDVIAVFFLRICYLLDKGIRPVFVFDGKSPFAKIKTIIKRKMINNK 94
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYL 107
MGV LWG+L P+ R + L K +A+D S W+ D + ++ ++
Sbjct: 1 MGVHGLWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMV-----RDAHI 55
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL L +P+FV +G P LK T+ R++
Sbjct: 56 LGFLRRICKLLFLRARPVFVFDGATPALKRRTLASRRR 93
>gi|303390841|ref|XP_003073651.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
gi|303302798|gb|ADM12291.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
Length = 558
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF--R 113
MGV+ LW IL P E+ ++ +A+D S WIC + S +Y FF R
Sbjct: 1 MGVRSLWKILKPSMEKTTPSGIK---LAVDTSIWICQYGHLG---SDDIIY----FFSKR 50
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
LL G++P+FV +GK P +K I +R++ RS
Sbjct: 51 IIKLLYHGIQPVFVFDGKPPEIKKHAILERRKRSNRSG 88
>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
Length = 629
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI--AEHSSQKNMYLRNLFF 112
MGV W +L P + L+D+ +A+DLS W+ ST A + +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRDRRVAVDLSFWVVSHSTAIRARSPHARVPHLRTLFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFSKMGAYPVFVVDGEPSPLK 85
>gi|170573997|ref|XP_001892630.1| XPG N-terminal domain containing protein [Brugia malayi]
gi|158601699|gb|EDP38537.1| XPG N-terminal domain containing protein [Brugia malayi]
Length = 362
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST-IAEHS-SQKNMYLRNLFFR 113
MG++ LW IL P+ E + L+ K +AID+S W+ ++ +EH + K +L + R
Sbjct: 1 MGIQGLWQILEPVAEPVTLESLEGKRLAIDISIWLHQAAYGYSEHQLNAKYPHLSLVLRR 60
Query: 114 TSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQ 144
+ LL ++P FV +G P+ K + RQ
Sbjct: 61 LAKLLFYKIRPFFVFDGPNVPIFKKKLLRDRQ 92
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MG++ LW IL P+ E + L+ K +AID+S W+
Sbjct: 1 MGIQGLWQILEPVAEPVTLESLEGKRLAIDISIWL 35
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
EL K IAID L ++ D + + + Q +L + +R + L+ LG+KP+F
Sbjct: 18 ELSGKIIAIDAFNTLYQFLSIIRQPDGTPLVDEKGQVTSHLSGIIYRVTNLIELGIKPVF 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
V +GK P+LK +TI+ R A+ R A R +
Sbjct: 78 VFDGKPPLLKAETIKAR--AEVREAARQM 104
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-----VQ 210
Q S + +R + L+ LG+KP+FV +GK P+LK +TI+ R A+ R A R V+
Sbjct: 53 QVTSHLSGIIYRVTNLIELGIKPVFVFDGKPPLLKAETIKAR--AEVREAARQMYEAAVE 110
Query: 211 AGSRARLKGLQ 221
GS K Q
Sbjct: 111 EGSAEAYKYAQ 121
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MGVK LW I+ PI R K IAID+S W+ + S +N L + D
Sbjct: 1 MGVKGLWSIVAPIGVRVNPEIFTGKRIAIDVSIWLYELIYGNNLKSSRNNNLDDLGMFND 60
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
LW +D S ++++ + S+ K ++ F R LL
Sbjct: 61 LW---------------------LDFS----ENNSDLKLSNLKKGHIYFFFLRICKLLYY 95
Query: 121 GVKPIFVLEGKAPVLKHDTIEKR 143
++PIF+ +G P LK TI +R
Sbjct: 96 NIRPIFIFDGIPPELKKRTIFQR 118
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 56 MGVKDLWGIL---TPICERK-PIWELQDKTIAIDLSAWICD-------------SSTIAE 98
MG+K L +L P C R+ + L ++IAID S + + +
Sbjct: 1 MGIKGLMKLLQEEAPSCIREVQMSHLAGRSIAIDASMALYQFLIAIRSNDGAGPAQALTN 60
Query: 99 HSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG 158
+ +L+ +F RT L+ G+KP++V +GK PV+K +EKR+ + +A ++++
Sbjct: 61 QDGEDTSHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRT-AANKSLEEA 119
Query: 159 SRARNL 164
+ A NL
Sbjct: 120 TEAGNL 125
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ---AQGRSAGRNVQAGS 213
S + +F RT L+ G+KP++V +GK PV+K +EKR+ A +S +AG+
Sbjct: 67 SHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLEEATEAGN 124
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWQIVGPSARPVRLEALSRKKLAIDASIWIYQFLKAVRDKDGNSLSSSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G P LK TI +R+Q + + +
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKRKTIVQRKQRREKHS 99
>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
Length = 1257
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 24/118 (20%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAI---------------------DLSAW---IC 91
MGV LW ++ P + P+ L+ K +A+ D+S W +
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFSPPNEILADWSTFRPADISIWLHQVV 60
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
+ S+ N +L LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 KGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 118
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 79 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 118
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGVK L + P + + EL K IAID WI D S + + + +
Sbjct: 1 MGVK-LKELFEP--SKIKMGELSGKLIAIDAFNWIFQFLTTIRLADGSYLTDSKGKVTTH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
L LF+R+ +L +KP+FV +G AP K +T+++R++ + A +Q S A
Sbjct: 58 LNGLFYRSVSMLENRIKPVFVFDGAAPKFKKETLKEREKTK-EEAIEKMQNASTA 111
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 30/140 (21%)
Query: 56 MGVKDLWGIL-----TPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQ 102
MG+K L ++ I ER + +TIAID S + D S ++ S +
Sbjct: 1 MGIKGLSKVIADFSPNAITERT-MNSFFGRTIAIDASMSLYQFLIAIRQDGSQLSAESGE 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI--------------EKRQQAQG 148
+L +F+RT ++ G+KP++V +GK PVLK D + E+R +A+
Sbjct: 60 TTSHLIGMFYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTERRTEAEE 119
Query: 149 RSAGRNVQAG-SRARNLFFR 167
+ A VQAG S A N F R
Sbjct: 120 KYAD-AVQAGDSEAINKFSR 138
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI--------------EKRQQAQGRSAGRNV 209
+F+RT ++ G+KP++V +GK PVLK D + E+R +A+ + A V
Sbjct: 67 MFYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTERRTEAEEKYAD-AV 125
Query: 210 QAG 212
QAG
Sbjct: 126 QAG 128
>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
Length = 1257
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 24/118 (20%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAI---------------------DLSAW---IC 91
MGV LW ++ P + P+ L+ K +A+ D+S W +
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFSPPNEILADWSTFRPADISIWLHQVV 60
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
+ S+ N +L LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 61 KGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 118
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 79 LFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNK 118
>gi|825732|emb|CAA50481.1| xeroderma pigmentosum group G complementing factor [Homo sapiens]
Length = 88
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL ++PIFV +G AP+LK T+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTL 88
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Query: 56 MGVKDLWGILTPICERKPIW--ELQDKTIAIDLSAWIC---------DSSTIAEHSSQKN 104
MGV DL +L ++KP+ +L K IAID + D + + +
Sbjct: 1 MGV-DLGDLL----KKKPVELSDLSSKVIAIDAYNTLYQFLSIIRQKDGTPLKDSKGNIT 55
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L L +R S L+ G++P+FV +GK P +K TIEKR QA+
Sbjct: 56 SHLSGLLYRMSSLMEAGIRPVFVFDGKPPQMKSPTIEKRVQAR 98
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S L +R S L+ G++P+FV +GK P +K TIEKR QA+
Sbjct: 56 SHLSGLLYRMSSLMEAGIRPVFVFDGKPPQMKSPTIEKRVQAR 98
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 24/174 (13%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MGVK LW I+ P+ R K IAID+S W+ + + +N + + D
Sbjct: 1 MGVKGLWSIVAPVGVRVNPEIFTGKRIAIDVSIWLYELTYANNMKVLRNGGVDNMSMFND 60
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
LW +D S + +T + + ++L F R LL
Sbjct: 61 LW---------------------MDFSE---NMNTDMRTENLRKVHLYFFFLRICKLLYY 96
Query: 121 GVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLL 174
++PIF+ +G P LK TI +R + R + + +++ S L L
Sbjct: 97 NIRPIFIFDGTPPELKRKTIFQRNMKRRNDEERFQKTAEKLIYNYYQRSLLKTL 150
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 54 AIMGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICD---------SSTIAEHSSQK 103
I G+ L G P C ++ +E L + +A+D S I + + +
Sbjct: 2 GIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGEI 61
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L+ +FFRT+ +L G+KP++V +GK P LK D + +R +
Sbjct: 62 TSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTE 103
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S + +FFRT+ +L G+KP++V +GK P LK D + +R + R A N +A +A+
Sbjct: 63 SHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTE---RRADAN-EALEKAKEA 118
Query: 219 GLQ 221
G Q
Sbjct: 119 GDQ 121
>gi|393247337|gb|EJD54845.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 585
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 56 MGVKDLWGILTPICERKPIWEL------------QDKTIAIDLSAWICDSSTIAEHSS-Q 102
MGVKDLW +L P + + L + I ID S W + +
Sbjct: 1 MGVKDLWKVLRPAASTQSVTRLAVDGFNTNLDGNRGYRIGIDASIWFGHTEKLKNRQRLG 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKHDTIEKRQQAQ 147
KN LR LFFR ++LL + + P+FV +G+ P++K + ++++
Sbjct: 61 KNHALRTLFFRCTHLLEVPILPVFVFDGQDRPLVKRGKVSHFKESK 106
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEHSSQK--NMYLRNLFF 112
MGV LW I+ P + L K +A+D S WI + + K ++ F
Sbjct: 1 MGVTSLWDIVGPAARPVKLEALSRKKLAVDASIWIYQFLKAVRDKDGNKLGQSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G+ P+FV +G AP LK I KR++ R +G A + A+ L
Sbjct: 61 RICKLLYFGILPLFVFDGGAPPLKRQVILKRRE---RRSGNAENAQTTAQKLL 110
>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 360
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWICD---------SSTIAEHSSQ 102
MG+K L +L+ P C R+ +E D+ +AID S I T+ + +
Sbjct: 1 MGIKGLTKLLSDHAPGCMREQKFESYLDRKVAIDASMHIYQFMMVIGRQGDQTLTNDAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 61 VTSHLQGMFMRTCRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S + +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 63 SHLQGMFMRTCRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1503
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYL 107
MGV LWG+L P+ R + L K +A+D S W+ D + ++ ++
Sbjct: 1 MGVHGLWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMV-----RDAHI 55
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L +P+FV +G P LK T+
Sbjct: 56 LGFLRRICKLLFLRARPVFVFDGATPALKRRTL 88
>gi|308161135|gb|EFO63593.1| Hypothetical protein GLP15_4712 [Giardia lamblia P15]
Length = 833
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MG+ LW IL+ + + + L KTI++D+S + + +KN ++R F
Sbjct: 1 MGIAGLWNILSQMSKGLNRADYLNKKTISVDVSGLLYSYYYTSSDEERKNYHVRATFLII 60
Query: 115 SYLLLLGVKPIFVLEGKAPV-LKHDTIEKRQQAQG 148
+ +L LG+ P+FV + AP LK + +E+R+ A+
Sbjct: 61 TRILSLGLMPVFVFDSGAPHRLKAEELERRRNAEA 95
>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
ATCC 50818]
Length = 1980
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGVK LW +L + + +L+ + +A+D S W+ + +N ++ +
Sbjct: 1 MGVKGLWQLLEVVGRPVQMDDLEGQVLAVDASIWLHQIVRAMRNDKGELVRNAHIHAMLA 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R L+ +KP+FV +G AP++K TI +R + Q A
Sbjct: 61 RICRLIHHRIKPVFVFDGGAPLIKKQTIAERSKRQTEGA 99
>gi|290791263|gb|EFD94922.1| hypothetical protein GL50803_14208 [Giardia lamblia ATCC 50803]
Length = 832
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MG+ LW IL+ + + + L KT+++D+S + + +KN ++R F
Sbjct: 1 MGIAGLWNILSQMSKGLNRADYLNKKTVSVDISGLLYSYYYTSSDEERKNYHVRATFLII 60
Query: 115 SYLLLLGVKPIFVLEGKAPV-LKHDTIEKRQQAQG 148
+ +L LG+ P+FV + AP LK + +E+R+ A+
Sbjct: 61 TRILSLGLMPVFVFDSGAPHWLKTEELERRRSAEA 95
>gi|158299596|ref|XP_319693.4| AGAP008939-PA [Anopheles gambiae str. PEST]
gi|157013593|gb|EAA14799.5| AGAP008939-PA [Anopheles gambiae str. PEST]
Length = 1256
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 25/118 (21%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAI----------------------DLSAW---I 90
MGV LW ++ + P+ L++K +A+ D+S W +
Sbjct: 1 MGVTGLWKLIEQSGKPVPLDTLENKVLAVGNYGRVFVCGVETKALTVSFWADISIWLHQV 60
Query: 91 CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 148
++ S+ N ++ LF R L+ +KPIFV +G AP+LK TI KRQQ++
Sbjct: 61 VKGFQDSKGSALPNAHVLGLFHRLCKLMYYRIKPIFVFDGGAPLLKKQTIAKRQQSKN 118
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
LF R L+ +KPIFV +G AP+LK TI KRQQ++
Sbjct: 80 LFHRLCKLMYYRIKPIFVFDGGAPLLKKQTIAKRQQSKN 118
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV DL G++ P + EL ++T+A+D + D + +A+ +
Sbjct: 1 MGV-DLGGLVEP--REIELKELNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
L + +R + L+ G+KP+FV +GK P K +TI+ R A+ R A R +
Sbjct: 58 LSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKAR--AEVREAARQM 104
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ A S + +R + L+ G+KP+FV +GK P K +TI+ R A+
Sbjct: 40 RQQDGAPLADDRGNVTSHLSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKAR--AEV 97
Query: 203 RSAGRNV 209
R A R +
Sbjct: 98 REAARQM 104
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 54 AIMGVKDLWGILTPIC-ERKPIWELQDKTIAID--------LSAWICDSSTIAEHSSQKN 104
I G+ L G P C +++ + + IAID LSA + + + +
Sbjct: 2 GIKGLTKLLGDYAPSCVQQQELKNYFGRKIAIDASMNIYQFLSAVRAGADNLRNEAGEVT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDT----IEKRQQAQGRSAGRNVQAGSR 160
+L LF+RT+ L+ LG+ P +V +GK P LK IE R+QA+ +A +
Sbjct: 62 SHLSGLFYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAALAKEEGDVE 121
Query: 161 ARNLFFR 167
A F R
Sbjct: 122 AYEKFNR 128
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDT----IEKRQQAQGRSA 205
+ S LF+RT+ L+ LG+ P +V +GK P LK IE R+QA+ +A
Sbjct: 59 EVTSHLSGLFYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAA 112
>gi|312067080|ref|XP_003136574.1| hypothetical protein LOAG_00986 [Loa loa]
Length = 882
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST-IAEHSSQKNM-YLRNLFFR 113
MG++ LW +L P+ E + L+ K +A+D+S W+ ++ +EH +L + R
Sbjct: 1 MGIQGLWQVLEPVAEPVILESLEGKRLAVDISIWLHQAAYGYSEHQHNARYPHLSLVLRR 60
Query: 114 TSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQ 144
+ LL ++P+FV +G P+ K + RQ
Sbjct: 61 LAKLLFYKIRPLFVFDGPNVPIFKRKLLRDRQ 92
>gi|393908823|gb|EFO27494.2| hypothetical protein LOAG_00986 [Loa loa]
Length = 880
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST-IAEHSSQKNM-YLRNLFFR 113
MG++ LW +L P+ E + L+ K +A+D+S W+ ++ +EH +L + R
Sbjct: 1 MGIQGLWQVLEPVAEPVILESLEGKRLAVDISIWLHQAAYGYSEHQHNARYPHLSLVLRR 60
Query: 114 TSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQ 144
+ LL ++P+FV +G P+ K + RQ
Sbjct: 61 LAKLLFYKIRPLFVFDGPNVPIFKRKLLRDRQ 92
>gi|410669636|ref|YP_006922007.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409168764|gb|AFV22639.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 341
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 76 ELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
EL K IAID I D S + + S +L LF RTS L +KP+F
Sbjct: 18 ELSGKVIAIDAYNTIYQFLSAIRQKDGSLLTDSSGNPTSHLTGLFSRTSKLRDANIKPVF 77
Query: 127 VLEGKAPVLKHDTIEKRQ 144
+ +GK P +K +T+EKR+
Sbjct: 78 IFDGKPPEMKKETLEKRR 95
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S LF RTS L +KP+F+ +GK P +K +T+EKR+
Sbjct: 56 SHLTGLFSRTSKLRDANIKPVFIFDGKPPEMKKETLEKRR 95
>gi|159489082|ref|XP_001702526.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280548|gb|EDP06305.1| predicted protein [Chlamydomonas reinhardtii]
Length = 119
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID--LSAWICDSSTIAEHSS---QKNMYLRNL 110
MGVK LW +L P+ R I + +K +AI S W+ +N +L
Sbjct: 1 MGVKGLWNLLEPVGRRINIEAIANKRLAIGEYASIWLFQFMKAMRDDKGDMMRNAHLLGF 60
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDT 139
F R LL V+P+FV +G P LK T
Sbjct: 61 FRRICRLLFHRVRPVFVFDGATPALKRHT 89
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 54 AIMGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICD---------SSTIAEHSSQK 103
I G+ L G P C ++ +E L + +A+D S I + +
Sbjct: 2 GIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGDI 61
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L+ +FFRT+ +L G+KP++V +GK P LK D + R +
Sbjct: 62 TSHLQGMFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSE 103
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S + +FFRT+ +L G+KP++V +GK P LK D + R +
Sbjct: 63 SHLQGMFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSE 103
>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
Length = 646
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI--AEHSSQKNMYLRNLFF 112
MGV W +L P ++ L+ + +A+DLS WI ST A + ++RN FF
Sbjct: 1 MGVGGSFWDLLKPYARQEGPVYLRGRRVAVDLSFWIVSHSTAIRARSPHARRPHVRNTFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLK 85
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW-------ICDSSTIAEHSSQKNMYLR 108
MGV+ LW +L P +R I L + +A+D S W + D+ + ++ +N +L
Sbjct: 1 MGVRGLWELLAPAGQRVGIETLSGRRVAVDASIWLNQFVRAVRDTEAM---TTVRNAHLL 57
Query: 109 NLFFRTSYLLLLGVKPIFVLEGKAPVLK 136
+F R LL G++ +FV +G P LK
Sbjct: 58 GIFRRCCKLLYYGIEAVFVFDGGVPSLK 85
>gi|293334819|ref|NP_001169528.1| uncharacterized protein LOC100383402 [Zea mays]
gi|224029901|gb|ACN34026.1| unknown [Zea mays]
gi|414886336|tpg|DAA62350.1| TPA: hypothetical protein ZEAMMB73_316768 [Zea mays]
Length = 638
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSST--IAEHSSQKNMYLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ ST +A + +LR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAILARLPRARRPHLRTTFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +GV P+FV++G+ LK
Sbjct: 61 RTLSLFAKMGVFPVFVVDGEPSPLK 85
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1403
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFFRTSYL 117
LW +++P+ + + K +AID S W+ K N ++ R S L
Sbjct: 82 LWTLISPVARPVNLETMGSKKLAIDSSIWLYQFQKAMRDREGKGIVNAHILGFLRRISKL 141
Query: 118 LLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L G+KP+FV +G P LK TI +R++
Sbjct: 142 LYYGIKPVFVFDGGVPTLKKQTINERKK 169
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R S LL G+KP+FV +G P LK TI +R++
Sbjct: 137 RISKLLYYGIKPVFVFDGGVPTLKKQTINERKK 169
>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
gi|317374911|sp|C1E3X9.1|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
Length = 384
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNM------ 105
MG+K L +L+ P C R+ +E D+ +AID S I + S ++ +
Sbjct: 1 MGIKGLTKLLSDYAPGCMREQKFEGYLDRKVAIDASMHIYQFMMVVGRSGEQQLTNEAGE 60
Query: 106 ---YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 61 VTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRK 102
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 148 GRSAGRNV--QAG---SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
GRS + + +AG S + +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 47 GRSGEQQLTNEAGEVTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRK 102
>gi|443725425|gb|ELU13028.1| hypothetical protein CAPTEDRAFT_123501, partial [Capitella teleta]
Length = 206
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
++ RNLFFR S+L LGVK +F +EG P LK + I+KR QA+
Sbjct: 1 VFFRNLFFRISHLTRLGVKLVFAVEGDPPPLKWEMIQKRLQAR 43
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
RNLFFR S+L LGVK +F +EG P LK + I+KR QA+
Sbjct: 4 RNLFFRISHLTRLGVKLVFAVEGDPPPLKWEMIQKRLQAR 43
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQ G+ A + S +F+RT L+ G+KP++V +GK PVLK ++KR + Q
Sbjct: 47 RQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQA 106
Query: 203 RS 204
++
Sbjct: 107 QA 108
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 77 LQDKTIAIDLSAWI--C-------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L K I ID S I C S +A + +L +F+RT L+ G+KP++V
Sbjct: 26 LSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYV 85
Query: 128 LEGKAPVLKHDTIEKRQQAQGRS 150
+GK PVLK ++KR + Q ++
Sbjct: 86 FDGKPPVLKKKELDKRNERQAQA 108
>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374866|sp|B0E412.1|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 469
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 56 MGVKDLWGILTPICER--KPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKN 104
MG+K L G+L+ + K I L + +AID S I D + + +
Sbjct: 1 MGIKGLTGLLSQHAPKAIKEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETT 60
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
YL LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 RYLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 99
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQ G+ A + S +F+RT L+ G+KP++V +GK PVLK ++KR + Q
Sbjct: 47 RQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQA 106
Query: 203 RS 204
++
Sbjct: 107 QA 108
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 77 LQDKTIAIDLSAWI--C-------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L K I ID S I C S +A + +L +F+RT L+ G+KP++V
Sbjct: 26 LSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYV 85
Query: 128 LEGKAPVLKHDTIEKRQQAQGRS 150
+GK PVLK ++KR + Q ++
Sbjct: 86 FDGKPPVLKKKELDKRNERQAQA 108
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGV D+ ++ P+ + + K IAID L ++ D + + + +
Sbjct: 1 MGV-DIKELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSH 59
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
L LF+RT + LG+KP++V +G+ P LK +E+R Q + + + +A R
Sbjct: 60 LNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERG 114
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT + LG+KP++V +G+ P LK +E+R Q + + + +A R L+
Sbjct: 58 SHLNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLE 117
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQ G+ A + S +F+RT L+ G+KP++V +GK PVLK ++KR + Q
Sbjct: 47 RQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQA 106
Query: 203 RS 204
+
Sbjct: 107 HA 108
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 77 LQDKTIAIDLSAWI--C-------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L K I ID S I C S +A + +L +F+RT L+ G+KP++V
Sbjct: 26 LSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLIEAGIKPVYV 85
Query: 128 LEGKAPVLKHDTIEKRQQAQGRS 150
+GK PVLK ++KR + Q +
Sbjct: 86 FDGKPPVLKKKELDKRNERQAHA 108
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAW-------ICDSS---TIAEHSS 101
MG+K L G L+ + P+ L +TIAID SA I D+S T+
Sbjct: 1 MGIKGLIGFLSETAPSSIKEVPLESLSGETIAIDASAALYQFAIAIRDTSYLSTLVNSKG 60
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ ++ L R +L G+KPIFV + P LK DT+ KR++
Sbjct: 61 ESTSHISGLMNRCVRILEAGIKPIFVFDSTPPDLKLDTLSKRKE 104
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + + +L + FRT L G+KP+FV +GK P K +TIE+R++ + R+
Sbjct: 44 DGTPLMNGAGRVTSHLSGILFRTVNFLEKGIKPVFVFDGKPPEFKQETIEQRREVRNRA 102
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S + FRT L G+KP+FV +GK P K +TIE+R++ + R+
Sbjct: 57 SHLSGILFRTVNFLEKGIKPVFVFDGKPPEFKQETIEQRREVRNRA 102
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAID----LSAWIC-----DSSTIAEHSSQKN 104
MGV +L G L P RK + +L + IA+D L ++ D + + + +
Sbjct: 1 MGVTEL-GKLIPKEARKELKLEQLSGRVIALDAYNALYQFLASIRQPDGTPLMDSRGRVT 59
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L LF+RT L+ G++P++V +GK P LK IE R+ A+ ++ + +A + +
Sbjct: 60 SHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMAKAAAEGKT 118
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G++P++V +GK P LK IE R+ A+ ++ + +A + +
Sbjct: 60 SHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMAKAAAEGK 117
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAID----LSAWIC-----DSSTIAEHSSQKN 104
MGV +L G L P R+ + +L +++A+D L ++ D + + + +
Sbjct: 1 MGVTEL-GKLIPQDARREVKLEQLSGRSVALDAYNALYQFLASIRQPDGTPLMDSRGRVT 59
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L LF+RT L+ G++P++V +GK P LK IE R+ A+ ++ + +A + R
Sbjct: 60 SHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRAEIESRRAAKEKAREQMERAAAEGR 117
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G++P++V +GK P LK IE R+ A+ ++ + +A + R
Sbjct: 60 SHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRAEIESRRAAKEKAREQMERAAAEGR 117
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 75 WELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPI 125
WE T AID + + D + + + +L +FFRT L G++P+
Sbjct: 18 WETLAGTAAIDGNNALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFFRTLRFLEKGIRPV 77
Query: 126 FVLEGKAPVLKHDTIEKRQQAQGRSAG 152
++ +GK P LK +TIE R++ + R AG
Sbjct: 78 YIFDGKPPALKQETIESRREVR-REAG 103
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 206
S +FFRT L G++P+++ +GK P LK +TIE R++ + R AG
Sbjct: 57 SHLSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVR-REAG 103
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI----------------CDSSTI--- 96
MGVK LW I+ P+ R K IAID+S W+ D+ +I
Sbjct: 1 MGVKGLWSIVAPVGVRVNPEIFTGKRIAIDVSIWLYELTYANNLKVLRNGAVDNMSIFND 60
Query: 97 --AEHSSQKNMYLRN----------LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ S Q N +R F R LL ++PIF+ +G P LK TI +R
Sbjct: 61 LWMDFSEQMNTDMRTDNLKKVHLYFFFLRICKLLYYNIRPIFIFDGTPPELKRKTIFQR 119
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI--AEHSSQKNMYLRNLFF 112
MGV W +L P ++ L+ + +A+DLS WI +T A ++ +LR FF
Sbjct: 1 MGVGGSFWDLLKPYARQEGAGYLRGRRVAVDLSFWIVSHTTAIRARSPHARHPHLRTTFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLKH 137
RT S +G P+FV++G+ LK+
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKY 86
>gi|393905975|gb|EFO24532.2| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IAID W+C+ ++A S+ + YL + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLSTFYTR 60
Query: 114 TSYLLLLGVKPIFVLEG 130
LL GV+PI V +G
Sbjct: 61 CRSLLEEGVEPIVVFDG 77
>gi|312073479|ref|XP_003139538.1| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IAID W+C+ ++A S+ + YL + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLSTFYTR 60
Query: 114 TSYLLLLGVKPIFVLEG 130
LL GV+PI V +G
Sbjct: 61 CRSLLEEGVEPIVVFDG 77
>gi|85014439|ref|XP_955715.1| DNA repair protein [Encephalitozoon cuniculi GB-M1]
gi|19171409|emb|CAD27134.1| similarity to DNA repair protein RAD2 (fragment) [Encephalitozoon
cuniculi GB-M1]
Length = 562
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF--R 113
MGV+ LW IL P E+ ++ +A+D S WIC + S +Y FF R
Sbjct: 1 MGVRSLWKILKPSAEKVTPSGVK---LAVDTSIWICQYGHLR---SDDIVY----FFSKR 50
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
LL + PIFV +GKAP +K I +R++ R++
Sbjct: 51 IVKLLYHRIHPIFVFDGKAPEMKRHAILQRRRRGNRTS 88
>gi|449330042|gb|AGE96307.1| DNA repair protein rad2 [Encephalitozoon cuniculi]
Length = 562
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF--R 113
MGV+ LW IL P E+ ++ +A+D S WIC + S +Y FF R
Sbjct: 1 MGVRSLWKILKPSAEKVTPSGVK---LAVDTSIWICQYGHLR---SDDIVY----FFSKR 50
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
LL + PIFV +GKAP +K I +R++ R++
Sbjct: 51 IVKLLYHRIHPIFVFDGKAPEMKRHAILQRRRRGNRTS 88
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 93 SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
SS + + +L+ +F+RT L+ G+KPI+V +G APVLK + KR QA+ + A
Sbjct: 51 SSALTNQLGETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKR-QARRKEAK 109
Query: 153 RNVQAGSRA 161
N++ +
Sbjct: 110 ENLKEATEV 118
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+ S + +F+RT L+ G+KPI+V +G APVLK + KR QA+ + A N++ +
Sbjct: 60 ETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKR-QARRKEAKENLKEATEV 118
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 74 IWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAP 133
I + K IA+D S + SS LR LFFRT L +KP+FV +GK P
Sbjct: 23 ISDYAGKVIALDTSVVVNQFRAATPLSSP----LRGLFFRTLTFLEHDIKPVFVFDGKPP 78
Query: 134 VLKHDTIEKRQQAQG 148
V K +EKR +A G
Sbjct: 79 VEKLPLLEKRAEAAG 93
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 158 GSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
S R LFFRT L +KP+FV +GK PV K +EKR +A G
Sbjct: 49 SSPLRGLFFRTLTFLEHDIKPVFVFDGKPPVEKLPLLEKRAEAAG 93
>gi|209878979|ref|XP_002140930.1| DNA-repair protein UVH3 [Cryptosporidium muris RN66]
gi|209556536|gb|EEA06581.1| DNA-repair protein UVH3, putative [Cryptosporidium muris RN66]
Length = 1017
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST---IAEHSSQKNMYLRNLFF 112
MGVK LW I+ P R L+ + +A+D S W+ T E ++ +L F
Sbjct: 1 MGVKGLWDIVAPSGYRVDPESLEGQILAVDASIWLKQFLTGLRDNEGNTPLGAHLLGFFK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL G+ P+ + +G P +K T+E+R+ + ++
Sbjct: 61 RLCKLLYYGIYPVVIFDGIPPEIKKRTLEQRRAQKEKT 98
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 24 DKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKDLWGILT---PICERKPIW-ELQD 79
D+ + S +CD + E + MG+K L +L+ P R+ + D
Sbjct: 9 DRVGRYERSTGLCDRAATVERPRSRARRGED-MGIKGLTALLSENAPGAMREQKFTSYLD 67
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +AID S I T+ + + +L+ + RTS +L G+KP++V +G
Sbjct: 68 RRVAIDASMHIYQFMIAVGRTGEQTLTNEAGEVTSHLQGMLMRTSRMLEAGIKPVYVFDG 127
Query: 131 KAPVLKHDTIEKRQ 144
K P +K + KR+
Sbjct: 128 KPPTMKGGELAKRK 141
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S + + RTS +L G+KP++V +GK P +K + KR+
Sbjct: 102 SHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRK 141
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 72 KPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
K I + K IA+D S + + A K L LF+RT L +KP+FVL+GK
Sbjct: 21 KEIGDYSGKIIALDTSI-VVNQFRSALPGHLKLSPLAGLFYRTLAFLEHDIKPVFVLDGK 79
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
P K +EKR Q+ G S+ ++ GS R L L+GV P G+A L
Sbjct: 80 PPHQKRAVLEKRAQSTGWSSSQSPNTGSAFNQECLR--LLHLMGV-PCIKAPGEAEAL 134
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
LF+RT L +KP+FVL+GK P K +EKR Q+ G S+ ++ GS
Sbjct: 58 LFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGS 107
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L K +A+D L ++ D + + + + +
Sbjct: 1 MGVTELGKLIGKEARREIKLESLAGKCVALDAYNALYQFLASIRQPDGTPLMDRAGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS---------AGRNVQ 156
+L LF+RT LL GVKP++V +GK P K IE+R++A+ ++ GR
Sbjct: 61 HLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRRED 120
Query: 157 AGSRARNLFFRTSYLL 172
A+ F TS ++
Sbjct: 121 VAKYAKRAIFLTSEMV 136
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S LF+RT LL GVKP++V +GK P K IE+R++A+ ++
Sbjct: 60 SHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKA 105
>gi|403347306|gb|EJY73073.1| hypothetical protein OXYTRI_05797 [Oxytricha trifallax]
Length = 1055
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK LW L P + + +L+ + +AID+S WI I + + N+ + R
Sbjct: 1 MGVKGLWNHLLPAARKINLEDLEGQVLAIDVSIWIIQFINIIQRKNDYNV-IDGFLRRIC 59
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
LL G+KP+FV +G P +K + R+ + R
Sbjct: 60 KLLFFGIKPVFVFDGSTPQIKKKCLMMRRNIRQR 93
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGVK I+TP E +L+ K +A+D + I D + + + + +
Sbjct: 1 MGVK-FKDIVTP--ENIKFQDLESKIVALDAANVIYQFLSSIRQVDGTPLMDENKNITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
+ +RTS L+ G+KPI++ +G + LK DT +KR++ + S
Sbjct: 58 FSGILYRTSSLIEKGIKPIYIFDGVSDALKKDTQDKRREVKEES 101
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
N S + +RTS L+ G+KPI++ +G + LK DT +KR++ + S
Sbjct: 50 ENKNITSHFSGILYRTSSLIEKGIKPIYIFDGVSDALKKDTQDKRREVKEES 101
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + S + +L +FFRT+ L G++P+F+ +GK+P +K TI++R+ + S
Sbjct: 44 DGTPLMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREES 102
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S +FFRT+ L G++P+F+ +GK+P +K TI++R+ + S + QA L
Sbjct: 57 SHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLA 116
Query: 219 G 219
G
Sbjct: 117 G 117
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 72 KPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
K I + K IA+D S + + A K L LF+RT L +KP+FVL+GK
Sbjct: 4 KEIGDYSGKIIALDTSI-VVNQFRSALPGHLKLSPLAGLFYRTLAFLEHDIKPVFVLDGK 62
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
P K +EKR Q+ G S+ + GS R L L+GV P G+A L
Sbjct: 63 PPNQKRAVLEKRAQSTGWSSSQGPNTGSAFNQECLR--LLHLMGV-PCIKAPGEAEAL 117
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
LF+RT L +KP+FVL+GK P K +EKR Q+ G S+ + GS
Sbjct: 41 LFYRTLAFLEHDIKPVFVLDGKPPNQKRAVLEKRAQSTGWSSSQGPNTGS 90
>gi|443691424|gb|ELT93282.1| hypothetical protein CAPTEDRAFT_209048 [Capitella teleta]
Length = 270
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGV LW +L P + +L+ +T+A+D + W+ ++ I + +L+N R
Sbjct: 1 MGVTHLWPLLKPAGQIYSWEDLRGRTLAVDSAIWLMETEQI----PCRKPHLKNALSRIM 56
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
L+ V+ +FVLEG+ LK T+ KR + + A R++
Sbjct: 57 TLMRHDVRLVFVLEGQKKELKAATLAKRSASPVKKACRSL 96
>gi|407408222|gb|EKF31745.1| DNA repair protein RAD2, putative [Trypanosoma cruzi marinkellei]
Length = 734
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV LW +L E E + K +AID S W+ S A+ S +NM L F
Sbjct: 1 MGVHGLWRLLDTFGEVTQPSEWRGKRVAIDASIWM--SQFRAKCKSGENMEQCVLEGFFL 58
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLK 136
R LL G++P+FV +G A LK
Sbjct: 59 RILKLLFYGIEPVFVFDGSATDLK 82
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQ G+ A + S +F+RT L+ G+KP++V +GK PVLK ++KR + Q
Sbjct: 47 RQGPSGQLAACEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQA 106
Query: 203 RS 204
++
Sbjct: 107 QA 108
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 77 LQDKTIAIDLSAWI--C-------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L K I ID S I C S +A + +L +F+RT L+ G+KP++V
Sbjct: 26 LSGKVIMIDASMQIYQCLIAIRQGPSGQLAACEGEVTSHLTGIFYRTIRLIEAGIKPVYV 85
Query: 128 LEGKAPVLKHDTIEKRQQAQGRS 150
+GK PVLK ++KR + Q ++
Sbjct: 86 FDGKPPVLKKKELDKRNERQAQA 108
>gi|356532054|ref|XP_003534589.1| PREDICTED: flap endonuclease GEN-like 1-like [Glycine max]
Length = 607
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P ++ L++K +A+DLS WI + + +LR FFRT
Sbjct: 1 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQPENAIKAMHVRKPHLRLTFFRT 60
Query: 115 -SYLLLLGVKPIFVLEGKAPVLK 136
S G P+F+++G +LK
Sbjct: 61 ISLFCKFGALPVFIVDGSPSLLK 83
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 74 IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I L +KT+AID + D + + + + +L + +R + L+ +KP
Sbjct: 16 ISNLSNKTVAIDAYNTLYQFLSIIRQRDGTPLQDSKGRTTSHLSGILYRITNLVEEDIKP 75
Query: 125 IFVLEGKAPVLKHDTIEKRQQAQ 147
+FV +GK P K DT+EKR+Q++
Sbjct: 76 VFVFDGKPPDFKTDTLEKRKQSR 98
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 144 QQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
Q ++GR+ S + +R + L+ +KP+FV +GK P K DT+EKR+Q++
Sbjct: 48 QDSKGRTT-------SHLSGILYRITNLVEEDIKPVFVFDGKPPDFKTDTLEKRKQSREN 100
Query: 204 SAGRNVQAGSRARLKGL 220
+ Q + A+ KGL
Sbjct: 101 AN----QKWNEAKEKGL 113
>gi|170584794|ref|XP_001897178.1| XPG N-terminal domain containing protein [Brugia malayi]
gi|158595426|gb|EDP33981.1| XPG N-terminal domain containing protein [Brugia malayi]
Length = 479
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IAID W+C+ ++A S+ + YL + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISVLRNKRIAIDGHTWLCEVLRGSVAHCSTTRKPYLSTFYTR 60
Query: 114 TSYLLLLGVKPIFVLEG 130
LL GV+PI V +G
Sbjct: 61 CRSLLEEGVEPIVVFDG 77
>gi|108706747|gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica
Group]
Length = 1477
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW +L P+ R + L K +A+D S W+ ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L +P+FV +G P LK T+
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTL 88
>gi|402594063|gb|EJW87990.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 508
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IAID W+C+ ++A S+ + YL + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISVLRNKRIAIDGHTWLCEVLRGSVAHCSTTRKPYLSTFYTR 60
Query: 114 TSYLLLLGVKPIFVLEG 130
LL GV+PI V +G
Sbjct: 61 CRSLLEEGVEPIVVFDG 77
>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
Length = 1470
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW +L P+ R + L K +A+D S W+ ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L +P+FV +G P LK T+
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTL 88
>gi|435851449|ref|YP_007313035.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433662079|gb|AGB49505.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 341
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 76 ELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
EL K IAID I + S + + S +L LF RT L +KPIF
Sbjct: 18 ELAGKVIAIDAYNTIYQFLSAIRQKNGSLLTDASGNPTSHLTGLFSRTCKLRDANIKPIF 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
+ +GK P +K T+EKR++ + + A RN + +L
Sbjct: 78 IFDGKPPQMKERTLEKRKECK-QLAARNYEIAREGGDL 114
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 210
S LF RT L +KPIF+ +GK P +K T+EKR++ + + A RN +
Sbjct: 56 SHLTGLFSRTCKLRDANIKPIFIFDGKPPQMKERTLEKRKECK-QLAARNYE 106
>gi|222624409|gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW +L P+ R + L K +A+D S W+ ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L +P+FV +G P LK T+
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTL 88
>gi|218192294|gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV LW +L P+ R + L K +A+D S W+ ++ +L
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL L +P+FV +G P LK T+
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTL 88
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+ DL + I ++ P I L D+ +AID S I + S + +
Sbjct: 1 MGIHDLSKV---IADKAPDAIKETEIKNLFDRKVAIDASMSIYQFLIAIRSEGSNLVNEA 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 159
+ +L LF+RT ++ G+KP++V +GK P +K + KR A+ + A N++ +
Sbjct: 58 GEATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKR-GARRKEAQANLEEAT 115
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 149 RSAGRNV-----QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
RS G N+ +A S LF+RT ++ G+KP++V +GK P +K + KR A+ +
Sbjct: 47 RSEGSNLVNEAGEATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKR-GARRK 105
Query: 204 SAGRNVQAGS 213
A N++ +
Sbjct: 106 EAQANLEEAT 115
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like
[Glycine max]
Length = 1707
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 63/203 (31%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MGV LW +L P+ R + L KT+A+D S W+ ++ + ++D
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWM----------------VQFVKAMRD 44
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
G + +N +L F R LL L
Sbjct: 45 EKGEMV------------------------------------RNAHLLGFFRRICKLLFL 68
Query: 121 GVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIF 180
KP+FV +G P LK T+ R R N QA R +T+ LLL
Sbjct: 69 RTKPVFVFDGGTPALKRRTVIAR-----RRQRENAQAKVR------KTAEKLLLNHLKAL 117
Query: 181 VLEGKAPVLKHDTIEKRQQAQGR 203
L+ A LK+ ++K +G+
Sbjct: 118 RLKELADDLKNQRMKKNSDTKGQ 140
>gi|170113270|ref|XP_001887835.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637196|gb|EDR01483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 98
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 56 MGVKDLWGILTPICERKPIWEL-------------QDKTIAIDLSAWICDSSTIAEHSSQ 102
MG+KDLW +L P+ E + +L + + ID S W+ + HS+
Sbjct: 1 MGIKDLWKLLAPVGEHISLHQLAVEDGFVNNIGGVRAYQVGIDTSGWV--YCVLYRHSAS 58
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
KN L L+ R LL ++P FV +G K P +K
Sbjct: 59 KNPELATLYVRCCCLLNKPIQPYFVFDGPKCPCVK 93
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 56 MGVKDLWGILTP--ICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKN 104
MGV +L G L P + R + +L K IA+D L ++ D + + + +
Sbjct: 1 MGVTEL-GKLIPDNLRRRVSLEQLNGKLIALDAYNALYQFLASIRQPDGTPLMDSQGRVT 59
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA---------GRNV 155
+L L +RT LL G+KP++V +GK P LK IEKR++ + ++ G+
Sbjct: 60 SHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKKS 119
Query: 156 QAGSRARNLFFRTSYLL 172
+A A+ F TS ++
Sbjct: 120 EARKYAQRALFITSDMV 136
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT LL G+KP++V +GK P LK IEKR++ + ++
Sbjct: 60 SHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKA 105
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 54 AIMGVKDLWGILTPI-CERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I G+ L G + P + I + IAID S I D S + + +
Sbjct: 2 GIQGLAKLLGDIAPSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEAGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
+L LF+RT ++ G+KP++V +GK P LK + E+R++AQ
Sbjct: 62 SHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQ 108
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
LF+RT ++ G+KP++V +GK P LK + E+R++AQ
Sbjct: 67 LFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQ 108
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 66 TPICERKPIWELQ-----DKTIAID-LSAWICDSSTIAEHSSQKNM--------YLRNLF 111
PI E P E++ K IAID L+A STI + M +L LF
Sbjct: 3 VPIGELIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 63 YRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAR 98
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S LF+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 56 SHLSGLFYRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAR 98
>gi|149050927|gb|EDM03100.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 53
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE 43
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ +
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKK 43
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE 98
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ +
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKK 43
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 81 TIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
TIAI S++ S++ S + +L + R S LL G+KP+FV + K P LK T+
Sbjct: 43 TIAIRDSSYF---SSLVNASGESTSHLYGMMSRCSKLLECGIKPVFVFDSKPPELKLKTL 99
Query: 141 EKRQQAQGRSAGRNVQA 157
EKR+Q + ++ QA
Sbjct: 100 EKRRQRREEASTSLKQA 116
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA---G 212
++ S + R S LL G+KP+FV + K P LK T+EKR+Q + ++ QA G
Sbjct: 61 ESTSHLYGMMSRCSKLLECGIKPVFVFDSKPPELKLKTLEKRRQRREEASTSLKQAIAEG 120
Query: 213 SRARLKGL 220
+ +K L
Sbjct: 121 DKESIKKL 128
>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
Length = 590
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI--AEHSSQKNMYLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ ST A ++ +LR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAIRARLPRARSPHLRTTFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLK 85
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P+ RK I + +AID S + D + + +
Sbjct: 1 MGIKGLTAIISENAPLAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNDAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK ++KR + + + +A +A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRIARRAETEKKFAEATDQAE 120
Query: 163 NL 164
+
Sbjct: 121 KI 122
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ + S +F+RT ++ G+KP +V +GK PVLK ++KR +
Sbjct: 47 RQQDGGQLTNDAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRIARRA 106
Query: 203 RSAGRNVQAGSRA 215
+ + +A +A
Sbjct: 107 ETEKKFAEATDQA 119
>gi|84489880|ref|YP_448112.1| flap endonuclease-1 [Methanosphaera stadtmanae DSM 3091]
gi|121717163|sp|Q2NFD4.1|FEN_METST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|84373199|gb|ABC57469.1| flap structure-specific endonuclease [Methanosphaera stadtmanae DSM
3091]
Length = 328
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 56 MGVKDLWGILTPICERKPIW--ELQDKTIAIDLSAWI---------CDSSTIAEHSSQKN 104
MGVK I +PI EL+ K + +D S I D + + + +
Sbjct: 1 MGVK-----FKDITNPEPIEMKELEGKILTVDASNVIYKFLSSMRQTDGTPLRDLNGHIT 55
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS----- 159
+L + F+TS L+ +KP++V +GKAP LK +T E+R + S + ++A
Sbjct: 56 SHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGDVV 115
Query: 160 RARNLFFRTSYL 171
AR RT++L
Sbjct: 116 AARKYAARTTHL 127
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
N S + F+TS L+ +KP++V +GKAP LK +T E+R + S + ++A
Sbjct: 51 NGHITSHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEA 108
>gi|71421804|ref|XP_811914.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70876631|gb|EAN90063.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV LW +L E + + K +AID S W+ S A+ +S +NM L F
Sbjct: 1 MGVHGLWRLLDTFGEVTQPSDWRGKRVAIDASIWM--SQFRAKCTSGENMEQCILEGFFL 58
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLK 136
R LL G++P+FV +G A LK
Sbjct: 59 RILKLLFYGIEPVFVFDGTATNLK 82
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQ G+ A + S LF+RT L+ G+KP++V +GK P LK ++KR + Q
Sbjct: 47 RQGPSGQLAAPEGEVTSHLTGLFYRTIRLIEAGIKPVYVFDGKPPQLKQKELDKRNERQA 106
Query: 203 RS 204
++
Sbjct: 107 QA 108
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 77 LQDKTIAIDLSAWI--C-------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L K I ID S I C S +A + +L LF+RT L+ G+KP++V
Sbjct: 26 LSGKVIMIDASMQIYQCLIAIRQGPSGQLAAPEGEVTSHLTGLFYRTIRLIEAGIKPVYV 85
Query: 128 LEGKAPVLKHDTIEKRQQAQGRS 150
+GK P LK ++KR + Q ++
Sbjct: 86 FDGKPPQLKQKELDKRNERQAQA 108
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 66 TPICERKPIWELQ-----DKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLF 111
PI E P E++ K IAID I D + + + + +L LF
Sbjct: 3 VPIGELIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLF 62
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 63 YRTINLMEAGIKPVYVFDGKPPEFKKKELEKRREAR 98
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S LF+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 56 SHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKKKELEKRREAR 98
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D +A S +
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSEIKNFFGRKVAIDASMSLYQFLIAVRQQDGVQLASESGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK + KR + + + +A A
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRSARRATTEEKLKEAVEEAE 120
Query: 163 NL 164
L
Sbjct: 121 KL 122
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + A + + S +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 47 RQQDGVQLASESGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKR 101
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNLFF 112
MGV LW +L + L+ K +A+D+S W + + + N +L L+
Sbjct: 1 MGVHGLWHLLQSTGRPVTLESLEGKVLAVDVSMWMHQLMKGMRDSHGNPVPNAHLIGLYH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEK 142
R LL +KP+FV +G P LK T ++
Sbjct: 61 RICKLLYYRIKPVFVFDGGVPALKKQTTDE 90
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L C I + +AID S + D + + +
Sbjct: 1 MGIKGLNKLLMEHCPAALRSSEIKNFGGRKVAIDASMSLYQFVIAVRQADGQQLTNENGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK PVLK + KR++
Sbjct: 61 TTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKE 103
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 144 QQAQGRS-AGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+QA G+ N + S +F+RT ++ G+KP++V +GK PVLK + KR++
Sbjct: 47 RQADGQQLTNENGETTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKE 103
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I+T P RK I + +AID S + D ++ + +
Sbjct: 1 MGIKGLNSIITEHVPSAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLSTETGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK ++KR + + + +A A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRREETEKKLAEATEEAE 120
Query: 163 NL 164
+
Sbjct: 121 KM 122
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ + + S +F+RT ++ G+KP +V +GK PVLK ++KR +
Sbjct: 47 RQQDGGQLSTETGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRRE 106
Query: 203 RSAGRNVQAGSRA 215
+ + +A A
Sbjct: 107 ETEKKLAEATEEA 119
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + ++S + +L LF+RT ++ G+KP++V +GK P LK IE+R+ + +A
Sbjct: 57 DGTPLMDNSGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAA 116
Query: 152 GRNVQA 157
+ +A
Sbjct: 117 KKYEEA 122
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S LF+RT ++ G+KP++V +GK P LK IE+R+ + +A + +A
Sbjct: 70 SHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEA 122
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 56 MGVKDLWGILTPIC--ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKN 104
MGV +L ++TP C E + +L + IA D + D + + + +
Sbjct: 1 MGV-NLKDLITPECKLEIDDLRQLSGRIIAFDAYNALYQFLAAIRQTDGTPLMDSKGRIT 59
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L LF+RT L G+KPI+V +GK P +K +E+R+ + R+A +A S
Sbjct: 60 SHLSGLFYRTINFLENGIKPIYVFDGKPPEIKRKELEQRRIRKERAAKMAEKAYSEG 116
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT L G+KPI+V +GK P +K +E+R+ + R+A +A S ++
Sbjct: 60 SHLSGLFYRTINFLENGIKPIYVFDGKPPEIKRKELEQRRIRKERAAKMAEKAYSEGNIE 119
>gi|398023565|ref|XP_003864944.1| DNA repair protein RAD2, putative [Leishmania donovani]
gi|322503180|emb|CBZ38264.1| DNA repair protein RAD2, putative [Leishmania donovani]
Length = 930
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L EL+ K +AID S WI + +A ++ L R
Sbjct: 1 MGVHGLWRLLDSFGVVVQPDELKGKRVAIDASIWIAQFRARVAPGEDTEHKVLEGFLARI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFF 166
LL G+ P+FV +G A K +R Q R+A V+ RAR +
Sbjct: 61 LKLLFYGIHPVFVFDGPASSSKGAEHHRRTMQQARNARALVK--RRARQILL 110
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+K L +L C + +P+ K IAID S A D S++ S
Sbjct: 1 MGIKQLSKLLKENCAKGIKERPLAYYSSKRIAIDASMSMYQFLIAVRSDGSSLGNEDSPT 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L F+RT ++ LG+ P++V +G P +K +EKR +
Sbjct: 61 S-HLVGFFYRTIRMVELGIIPVYVFDGVPPEVKMKELEKRSE 101
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ G S G S F+RT ++ LG+ P++V +G P +K +EKR +
Sbjct: 47 RSDGSSLGNEDSPTSHLVGFFYRTIRMVELGIIPVYVFDGVPPEVKMKELEKRSE 101
>gi|146101653|ref|XP_001469167.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
gi|134073536|emb|CAM72269.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
Length = 930
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L EL+ K +AID S WI + +A ++ L R
Sbjct: 1 MGVHGLWRLLDSFGVVVQPDELKGKRVAIDASIWIAQFRARVAPGEDTEHKVLEGFLARI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFF 166
LL G+ P+FV +G A K +R Q R+A V+ RAR +
Sbjct: 61 LKLLFYGIHPVFVFDGPASSSKGAEHHRRTMQQARNARALVK--RRARQILL 110
>gi|395519517|ref|XP_003763891.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Sarcophilus harrisii]
Length = 818
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 70 ERKPIWE------LQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVK 123
E++ WE L++K I+I L+ + +S Q N +L LF R LL ++
Sbjct: 39 EKRQQWENIYKQSLKEKDISIWLNQALKGVRDRHGNSVQ-NAHLLTLFHRLCKLLFFRIR 97
Query: 124 PIFVLEGKAPVLKHDTIEKRQQ 145
PIFV +G+AP+LK T+ KR+Q
Sbjct: 98 PIFVFDGEAPLLKKQTLAKRRQ 119
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 152 GRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
G +VQ + LF R LL ++PIFV +G+AP+LK T+ KR+Q
Sbjct: 73 GNSVQ-NAHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKKQTLAKRRQ 119
>gi|225453885|ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV W +L P + +++K +A+DLS WI T A ++ +N +LR FFRT
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQET-ATKANVRNPHLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLK 82
>gi|71425588|ref|XP_813131.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70877987|gb|EAN91280.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV LW +L E + + K +AID S W+ S A+ +S +NM L F
Sbjct: 1 MGVHGLWRLLDTFGEVTQPSDWRGKRVAIDASIWM--SQFRAKCTSGENMEQCILEGFFL 58
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLK 136
R LL G++P+FV +G A LK
Sbjct: 59 RILKLLFYGIEPVFVFDGTATDLK 82
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
+L K IAID L ++ D + + + + +L + +R + L+ G+KP+F
Sbjct: 18 DLNGKVIAIDAFNTLYQFLSIIRQMDGTPLVDDKGEVTSHLSGIIYRVTNLVEQGIKPVF 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
V +GK PVLK +TI+ R++ R A R +
Sbjct: 78 VYDGKPPVLKAETIKARREV--REAARQM 104
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV 209
+ S + +R + L+ G+KP+FV +GK PVLK +TI+ R++ R A R +
Sbjct: 53 EVTSHLSGIIYRVTNLVEQGIKPVFVYDGKPPVLKAETIKARREV--REAARQM 104
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + S +L +F+RT L+ G+KPIFV +GK LK+ T+E RQ A+ ++
Sbjct: 43 DGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAK 102
Query: 152 GRNVQAGSRA----RNLFFRTSYL 171
+A SR + + R +Y+
Sbjct: 103 AELEEAISRGEENLKQYYSRINYI 126
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S +F+RT L+ G+KPIFV +GK LK+ T+E RQ A+ ++ +A SR
Sbjct: 56 SHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRGE 113
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 30/118 (25%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------------------------- 90
MGVK LW I+ PI R K IAID+S W+
Sbjct: 1 MGVKGLWSIVAPIGVRVNPEIFTGKRIAIDVSIWLYELIYGNNLKSSRNNNFDDLGVFND 60
Query: 91 -----CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ ++ + S+ K +L F R LL ++PIF+ +G P LK TI +R
Sbjct: 61 LWLDFSEQNSDLKLSNLKKGHLYFFFLRICKLLYYNIRPIFIFDGTPPELKKRTIFQR 118
>gi|407847469|gb|EKG03173.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM---YLRNLFF 112
MGV LW +L E + + K +AID S W+ S A+ +S +NM L F
Sbjct: 1 MGVHGLWRLLDTFGEVTQPSDWRGKRVAIDASIWM--SQFRAKCTSGENMEQCILEGFFL 58
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLK 136
R LL G++P+FV +G A LK
Sbjct: 59 RILKLLFYGIEPVFVFDGTATDLK 82
>gi|393240015|gb|EJD47543.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 598
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 56 MGVKDLWGILTPICERKPIWEL------------QDKTIAIDLSAWICDSSTIAEHSS-Q 102
MGVK LW +L P + + L + I ID S W + +
Sbjct: 1 MGVKGLWKVLRPAASTQSVTRLAVDGFNTNLDGNRGYRIGIDASIWFGHTEKLKNRQRLG 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
KN LR LFFR ++LL + + P+FV +GK
Sbjct: 61 KNHALRTLFFRCTHLLEVPLLPLFVFDGK 89
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGV DL ++ + EL+ K ++ID L ++ D + + + + +
Sbjct: 1 MGV-DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSH 59
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFF 166
L LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +
Sbjct: 60 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEEL 119
Query: 167 RTSYLLLLGVKPIFVLEGK 185
R +L + I V E K
Sbjct: 120 RKYSQAILRLSNIMVEESK 138
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +++
Sbjct: 58 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIE 117
Query: 219 GLQ 221
L+
Sbjct: 118 ELR 120
>gi|422295551|gb|EKU22850.1| flap endonuclease-1 [Nannochloropsis gaditana CCMP526]
Length = 193
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 56 MGVKDLWGILT-----PICERKPIWELQDKTIAIDLSAWI-------------CDSSTIA 97
MG+K L ++ I E K + +T+A+D S I +S +
Sbjct: 1 MGIKGLTKLIADEAPEAIKEHK-VEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLT 59
Query: 98 EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ + +++ LF RT +L G+KP+FV +GK P LK ++KR++
Sbjct: 60 NEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRRE 107
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S + LF RT +L G+KP+FV +GK P LK ++KR++
Sbjct: 67 SHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRRE 107
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG++ L ++ I ++ I ++ IAID S + D + +A S +
Sbjct: 1 MGIRGLAKLIEEIAPAAVSKRLIQHYCNRVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L L + + ++ G+KPIFV +GK P K +EKR+QA+
Sbjct: 61 ITSHLVGLLSKVTRMVEAGIKPIFVFDGKPPEDKQGELEKRRQAR 105
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 56 MGVKDLWGIL---TPIC--ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSS 101
MG+K L +L +P C ERK D+ IAID S I S + + +
Sbjct: 1 MGIKGLSKLLAEHSPGCSMERK-FQSYLDRKIAIDASMHIYQYLMVVGRSGESQLTDENG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
Q +L + RT +L G+KP++V +GK P LK + KR+
Sbjct: 60 QVTAHLIGVLSRTCRMLEAGIKPVYVFDGKPPTLKGGELAKRK 102
>gi|389595061|ref|XP_003722753.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
gi|323363981|emb|CBZ12987.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
Length = 931
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L EL+ K +AID S WI + +A ++ L R
Sbjct: 1 MGVHGLWRLLDSFGVVVQPDELKGKRVAIDASIWIAQFRARVAPGEDTEHKVLEGFLARI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
LL G++P+FV +G A K +R + R+A V+ RAR +
Sbjct: 61 LKLLFYGIRPVFVFDGPASSSKGAEHHRRTMQRARTAQALVK--RRARQIL 109
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 77 LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L+ + IAID L ++ D + + + S + +L LF+RT ++ G+KP++V
Sbjct: 23 LRGRVIAIDGYNALYQFLAAIRQPDGTPLMDGSGRITSHLSGLFYRTINIVEAGIKPVYV 82
Query: 128 LEGKAPVLKHDTIEKR---QQAQGRSAGRNVQAGS 159
+GK P LK IE+R ++ R VQAG
Sbjct: 83 FDGKPPELKAKEIERRRVVREEAARKYEEAVQAGD 117
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR---QQAQGRSAGRNVQAGS 213
S LF+RT ++ G+KP++V +GK P LK IE+R ++ R VQAG
Sbjct: 60 SHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAKEIERRRVVREEAARKYEEAVQAGD 117
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 72 KPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
K I + K IA+D S + S L LFFRT L G+KP+FV +GK
Sbjct: 21 KDITDYTGKVIALDTSIVVNQFRAATPLLSP----LTGLFFRTLTFLEHGIKPVFVFDGK 76
Query: 132 APVLKHDTIEKRQQAQGRS 150
P K +EKR Q GR+
Sbjct: 77 PPGEKKAVLEKRAQTAGRN 95
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
LFFRT L G+KP+FV +GK P K +EKR Q GR+
Sbjct: 55 LFFRTLTFLEHGIKPVFVFDGKPPGEKKAVLEKRAQTAGRN 95
>gi|66799647|ref|XP_628749.1| xeroderma pigmentosum group G family protein [Dictyostelium
discoideum AX4]
gi|60462089|gb|EAL60336.1| xeroderma pigmentosum group G family protein [Dictyostelium
discoideum AX4]
Length = 977
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK-----NMYLRNL 110
MGV LW +L I L+ KT+AID S WI + I ++K N +
Sbjct: 1 MGVPKLWELLQQSGTSIDINALEGKTLAIDASIWI--HTFIRTLKNEKGDPMTNAPILGF 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLK 136
F R LL L VKPIFV +G P LK
Sbjct: 59 FRRICKLLSLRVKPIFVFDGGVPYLK 84
>gi|224130172|ref|XP_002320770.1| predicted protein [Populus trichocarpa]
gi|222861543|gb|EEE99085.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV W +L P + L++K +A+DLS WI T + + + +LR FFRT
Sbjct: 1 MGVGGKFWDLLKPYARHEGPDFLREKRVAVDLSYWIVQHETAIKATHVRKPHLRLTFFRT 60
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 61 INLFSKFGALPVFVVDGTPSPLK 83
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAW-ICDSSTIAEHSSQKNM-YLRNLFF 112
MGV W +L P + L+ + +A+DLS W I S+ I S + +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVISHSAAIRARSPHARLPHLRTLFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLK 85
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 74 IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I L +K +AID + D + + + Q +L + +R + L+ GVKP
Sbjct: 16 IAGLSNKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKP 75
Query: 125 IFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
IFV +GK P K DT+ KR + + + +
Sbjct: 76 IFVFDGKPPDFKSDTLAKRHEVRESATAK 104
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
Q S + +R + L+ GVKPIFV +GK P K DT+ KR + + + +
Sbjct: 53 QITSHLSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAK 104
>gi|390371157|dbj|GAB65038.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1505
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI-----CDSSTIAEHSSQKNMYLRN- 109
MGVK LW I+ P+ R K IAID+S W+ ++ + + + NM + N
Sbjct: 1 MGVKGLWSIVAPVGVRVNPEIFTGKRIAIDVSIWLYELTYANNLKVLRNGALDNMSIFND 60
Query: 110 -------------------------LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
F R LL ++PIF+ +G P LK TI +R
Sbjct: 61 LWMDFSENMNNDMRTDNLKKVHLYFFFLRICKLLYYNIRPIFIFDGTPPELKRKTIFQR 119
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L +++ P+ R+ I + +AID S + D +A S +
Sbjct: 1 MGIKGLTALISENAPLATRRSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLATDSGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKR 101
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ A + + S +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 47 RQQDGGQLATDSGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKR 101
>gi|66356946|ref|XP_625651.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
gi|46226699|gb|EAK87678.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
Length = 1147
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW I+ P R L+ + +AID S W+ E + +L F
Sbjct: 1 MGVKGLWDIVAPSGIRVKPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLLGFFK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL G+ P+ V +G P +K T+E R+ + S
Sbjct: 61 RLCKLLYYGILPVIVFDGTPPDIKKRTLELRRMQREMS 98
>gi|34558672|gb|AAQ75078.1| RAD2 [Cryptosporidium parvum]
Length = 1147
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW I+ P R L+ + +AID S W+ E + +L F
Sbjct: 1 MGVKGLWDIVAPSGIRVKPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLLGFFK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL G+ P+ V +G P +K T+E R+ + S
Sbjct: 61 RLCKLLYYGILPVIVFDGTPPDIKKRTLELRRMQREMS 98
>gi|147845003|emb|CAN80577.1| hypothetical protein VITISV_031734 [Vitis vinifera]
Length = 239
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV W +L P + +++K +A+DLS WI T A ++ +N +LR FFRT
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQET-ATKANVRNPHLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLK 82
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILT---PICERKPIW-ELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L+ P R+ + D+ +AID S I T+ + +
Sbjct: 1 MGIKGLTALLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ + RTS +L G+KP++V +GK P +K + KR+
Sbjct: 61 VTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S + + RTS +L G+KP++V +GK P +K + KR+
Sbjct: 63 SHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
>gi|330795648|ref|XP_003285884.1| hypothetical protein DICPUDRAFT_30018 [Dictyostelium purpureum]
gi|325084189|gb|EGC37623.1| hypothetical protein DICPUDRAFT_30018 [Dictyostelium purpureum]
Length = 88
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK-----NMYLRNL 110
MGV LW ++ I L+ K +AID S WI + + ++K N +L
Sbjct: 1 MGVPKLWELIQQSGTEIDINALEGKILAIDASIWI--HTFVRALKNEKGDPIPNAHLLGF 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
F R LL L VKPIFV +G P LK TI
Sbjct: 59 FKRICKLLSLRVKPIFVFDGGIPYLKKKTI 88
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDS----------STIAEHSS 101
MG+K L L +++ I L K +AID S WI + S
Sbjct: 1 MGIKGLTKFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAIREGSQWGNLTNSSG 60
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ ++ + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 61 ESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 104
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ S + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 61 ESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 104
>gi|405117687|gb|AFR92462.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. grubii H99]
Length = 1222
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 77 LQDKTIAIDLSAWICDSSTIAEHSSQK---NMYLRNLFFRTSYLLLLGVKPIFVLEGKAP 133
++ K +AID S W+ + N ++ R + LL G+KP+FV +G AP
Sbjct: 8 MEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAP 67
Query: 134 VLKHDTIEKRQQAQGRSAGRNVQAGSR 160
LK TI +R++ + +A + + +
Sbjct: 68 ALKRSTIAERKRKKTGAAANHAKVAEK 94
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 128 LEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAP 187
+EGK + + QA R V + R + LL G+KP+FV +G AP
Sbjct: 8 MEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVLGFLRRINKLLFHGIKPVFVFDGGAP 67
Query: 188 VLKHDTIEKRQQAQGRSAGRNVQAGSR 214
LK TI +R++ + +A + + +
Sbjct: 68 ALKRSTIAERKRKKTGAAANHAKVAEK 94
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNM-YLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ S+ I S + +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLK 85
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L + +A+D L ++ D + + + + +
Sbjct: 1 MGVTELGKLIGKEARREAKLEALAGRCVALDAYNALYQFLASIRQPDGTPLMDRAGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
++ LF+RT L+ G+KP++V +GK P K IE+R++A+ ++ V+A R
Sbjct: 61 HISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRRAKEKATEELVRAIKEGR 117
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G+KP++V +GK P K IE+R++A+ ++ V+A R
Sbjct: 60 SHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRRAKEKATEELVRAIKEGR 117
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 77 LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L+ +TIAID L ++ D + + ++ + +L +F+RT L+ G+KPI+V
Sbjct: 25 LKGRTIAIDAYNALYQFLAAIRQPDGTPLIDNKGRVTSHLSGIFYRTINLIEAGIKPIYV 84
Query: 128 LEGKAPVLKHDTIEKRQQAQGRSAGR 153
+G P LK +EKR++ + +A +
Sbjct: 85 FDGLPPSLKEKELEKRRKVKEEAAKK 110
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
S +F+RT L+ G+KPI+V +G P LK +EKR++ + +A +
Sbjct: 62 SHLSGIFYRTINLIEAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKK 110
>gi|449454486|ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV W +L P + L++K +A+DLS WI T A S+ ++ +LR FFRT
Sbjct: 1 MGVGGHFWDLLKPNARTEGFDFLRNKRVAVDLSFWIVQHET-AIKSTARSPHLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 ITLFAKFGAFPVFVVDGTPSPLK 82
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQK 103
MGVKDL ++ +P R K + +A+D S + D S + S +
Sbjct: 1 MGVKDLSKVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 61 TSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTE 102
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTE 102
>gi|405118362|gb|AFR93136.1| hypothetical protein CNAG_03633 [Cryptococcus neoformans var.
grubii H99]
Length = 871
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK------------TIAIDLSAWICDSSTIAEHSSQK 103
MGV LW +L P + L + TI ID S WI ++ + +H +
Sbjct: 1 MGVSGLWDLLRPSAASATLHTLSKEAFLENKNGLRALTIGIDASIWIFHAA-VPQHG--E 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHD 138
N +LR +FF+ + LL V P+FV +G P +K +
Sbjct: 58 NPFLRTIFFKVTALLQHPVLPVFVFDGPNKPAMKRN 93
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L+ +F+RT L+ G+KPI+V +GKAPVLK + KR A+ + A + ++ + N
Sbjct: 64 HLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKR-YARRKEAEQQLEEANEVGN 120
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
N + S + +F+RT L+ G+KPI+V +GKAPVLK + KR
Sbjct: 58 NGETTSHLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKR 101
>gi|334346854|ref|XP_001376389.2| PREDICTED: hypothetical protein LOC100025456 [Monodelphis
domestica]
Length = 1410
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G+AP+LK T+ KR+Q
Sbjct: 503 NSVENAHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKKQTLAKRRQ 548
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G+AP+LK T+ KR+Q
Sbjct: 513 LFHRLCKLLFFRIRPIFVFDGEAPLLKKQTLAKRRQ 548
>gi|402466077|gb|EJW01645.1| hypothetical protein EDEG_03812 [Edhazardia aedis USNM 41457]
Length = 856
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKN-----MYLRNL 110
MGVK LW + P + P+ ++ +AID S W+ H +KN YL
Sbjct: 1 MGVKYLWRLF-PKKQSTPV----NQKLAIDTSIWL--------HYYRKNDIETFKYLT-- 45
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL KPIFV +GK P LK+ I KRQQ
Sbjct: 46 IKRILKLLFYKNKPIFVFDGKTPHLKNRAIRKRQQ 80
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQK 103
MGVKDL ++ +P R K + +A+D S + D S + S +
Sbjct: 1 MGVKDLSKVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 61 TSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTE 102
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTE 102
>gi|297842934|ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
gi|297335190|gb|EFH65607.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P +++ L++K +A+DLS WI T + K +LR FFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQRGFDYLRNKRVAVDLSFWIVQHETAVKGFVLKP-HLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLK 82
>gi|414590012|tpg|DAA40583.1| TPA: hypothetical protein ZEAMMB73_816984 [Zea mays]
Length = 636
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI--AEHSSQKNMYLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ +T A ++ +LR FF
Sbjct: 1 MGVGGSFWDLLKPCARHEGAGYLRGRRVAVDLSFWVVSHTTAIRARLPRARSPHLRTTFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLK 85
>gi|67589751|ref|XP_665434.1| RAD2 [Cryptosporidium hominis TU502]
gi|54656123|gb|EAL35205.1| RAD2 [Cryptosporidium hominis]
Length = 1158
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGVK LW I+ P R L+ + +AID S W+ E + +L F
Sbjct: 1 MGVKGLWDIVAPSGIRVRPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLLGFFK 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
R LL G+ P+ V +G P +K T+E R+ + S
Sbjct: 61 RLCKLLYYGILPVIVFDGTPPDIKKRTLELRRMQREMS 98
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + +++ + +L LF+RT ++ G+KP++V +GK P LK IE+R+ + +A
Sbjct: 57 DGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAA 116
Query: 152 GRNVQA 157
+ +A
Sbjct: 117 KKYEEA 122
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
N + S LF+RT ++ G+KP++V +GK P LK IE+R+ + +A + +A
Sbjct: 65 NGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEA 122
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG++ L ++ + ++ I +K IAID S + D + +A S +
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L L + L G+KPIFV +GK P K +EKR+QA+
Sbjct: 61 VTSHLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAR 105
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK +EKR + + + QA
Sbjct: 89 PPQLKSAELEKRGERRAEAEKMLAQA 114
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S +F+RT +L G+KP++V +GK P LK +EKR + + + QA
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKMLAQA 114
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKR 100
>gi|308321602|gb|ADO27952.1| flap endonuclease 1-b [Ictalurus furcatus]
Length = 140
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNDDGETTSHLMGMFYRTIRMLDSGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 67 MFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKR 100
>gi|38614246|gb|AAH60659.1| Ercc5 protein, partial [Mus musculus]
Length = 790
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 90 ENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 132
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 149 RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + NV + LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 82 RDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 132
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKR 100
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + + ++ LF+RT L+ G+KP++V +GK P K IE+R++A+ ++
Sbjct: 47 DGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKAT 106
Query: 152 GRNVQAGSRAR 162
V+A R
Sbjct: 107 EELVRAIKEGR 117
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G+KP++V +GK P K IE+R++A+ ++ V+A R
Sbjct: 60 SHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGR 117
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSGELEKR 100
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGVK I++P E +L K +A+D + I D + + + + + +
Sbjct: 1 MGVK-FKDIVSP--EEIKFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
+ +RTS L+ G+KPI+V +G++ LK +T +KR++ + S R
Sbjct: 58 FSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERR 104
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG 212
+N + S + +RTS L+ G+KPI+V +G++ LK +T +KR++ + S R +A
Sbjct: 50 QNGRITSHFSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERRWKEAL 109
Query: 213 SRARL 217
RL
Sbjct: 110 EEGRL 114
>gi|255541446|ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative [Ricinus communis]
Length = 609
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV W IL P + L++K +AIDLS WI T A S + +LR FFRT
Sbjct: 1 MGVGGKFWDILKPYTRHEGPDFLREKRVAIDLSYWIVQHET-AIKSYARKPHLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLK 82
>gi|221222286|gb|ACM09804.1| Flap endonuclease 1-A [Salmo salar]
Length = 192
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
N + S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 57 NGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKR 100
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSAELEKR 100
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKR 100
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L K IA+D L ++ D + + + + +
Sbjct: 1 MGVTELGKLIGKEVRREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS---------AGRNVQ 156
+L LF+RT LL G++P++V +GK P K IE+R++ + ++ GR
Sbjct: 61 HLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRRED 120
Query: 157 AGSRARNLFFRTSYLL 172
A+ F TS ++
Sbjct: 121 VAKYAKRAVFITSEMV 136
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNVQAGSR 214
S LF+RT LL G++P++V +GK P K IE+R++ + ++ R ++ G R
Sbjct: 60 SHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRR 118
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 56 MGVKDLWGILTP----ICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I+T R I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIITEHVPSAVRRSDIRTYFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP +V +GK PVLK + KR + + + + +A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRAETEKQLAEA 115
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ N + S +F+RT ++ G+KP +V +GK PVLK + KR + +
Sbjct: 47 RQQDGGQLTNENGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRA 106
Query: 203 RSAGRNVQA 211
+ + +A
Sbjct: 107 ETEKQLAEA 115
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + +L L +RT+ L+ +G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 43 DGNPLVNSRGKVTSHLSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESS 101
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT+ L+ +G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 56 SHLSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESS 101
>gi|221222240|gb|ACM09781.1| Flap endonuclease 1-B [Salmo salar]
Length = 109
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
N + S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 57 NGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKR 100
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 68 ICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM--YLRNLFFRTSYLLLLGVKPI 125
I + + L K AID S WI S +A S+ ++ + F R YLL G+KP+
Sbjct: 77 ITNSQQVESLFGKVCAIDGSFWI--SHCLASESNMRHGGDIVAVFFLRICYLLDRGIKPV 134
Query: 126 FVLEGKAPVLKHDTIEKRQQAQGRS 150
FV +G +P K TI +R+ A+ +S
Sbjct: 135 FVFDGCSPFAKMKTIIRRKIAREKS 159
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
F R YLL G+KP+FV +G +P K TI +R+ A+ +S
Sbjct: 119 FFLRICYLLDRGIKPVFVFDGCSPFAKMKTIIRRKIAREKS 159
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L F+RT L+ G+KP +V +GK P K IEKR++A+ ++
Sbjct: 43 DGTPLMDSRGRITSHLSGFFYRTINLMEAGIKPAYVFDGKPPEFKRKEIEKRREAREKAE 102
Query: 152 GR 153
R
Sbjct: 103 ER 104
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S F+RT L+ G+KP +V +GK P K IEKR++A+ ++ R +A R L+
Sbjct: 56 SHLSGFFYRTINLMEAGIKPAYVFDGKPPEFKRKEIEKRREAREKAEERWHEALERGDLE 115
>gi|345324376|ref|XP_001513433.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Ornithorhynchus anatinus]
Length = 1520
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+N +L LF R LL ++PIFV +G+ P+LK T+ KR+Q + +A + + +
Sbjct: 310 ENAHLLTLFHRLCKLLFFRIRPIFVFDGETPILKKQTLAKRRQRKDLAASDSKKTTEKLL 369
Query: 163 NLFFRTSYL 171
F + L
Sbjct: 370 KTFLKRQAL 378
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
LF R LL ++PIFV +G+ P+LK T+ KR+Q + +A
Sbjct: 317 LFHRLCKLLFFRIRPIFVFDGETPILKKQTLAKRRQRKDLAA 358
>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
gi|226700954|sp|A9A4B0.1|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
Length = 340
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
+ +KDL + E+ + +K IAID I D +++ + +
Sbjct: 3 LNLKDLV-----VREKTTLEAFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 58 LSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 61 LLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|38488751|ref|NP_942115.1| flap endonuclease 1 [Danio rerio]
gi|29436437|gb|AAH49413.1| Flap structure-specific endonuclease 1 [Danio rerio]
Length = 330
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKR 100
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731
SS1]
Length = 1334
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 73 PIWE-LQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFFRTSYLLLLGVKPIFVL 128
P+ E L+ K +AID S WI +T+ + + N ++ R LL GVKP+FV
Sbjct: 87 PVLETLEGKVLAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLRRICKLLYYGVKPVFVF 146
Query: 129 EGKAPVLKHDTIEKRQQ 145
+G AP LK TI +R++
Sbjct: 147 DGGAPALKRVTITERKK 163
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R LL GVKP+FV +G AP LK TI +R++
Sbjct: 131 RICKLLYYGVKPVFVFDGGAPALKRVTITERKK 163
>gi|334182224|ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332189225|gb|AEE27346.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 598
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P +++ L++K +A+DLS WI T + K +LR FFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKP-HLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN------VQAG-SRARNLFF 166
L G P+FV++G LK + R RS+G + ++ G S RN F
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKS---QARISRFFRSSGIDTCNLPVIKDGVSVERNKLF 116
Query: 167 -----RTSYLLLLGVKPIFVLEGKAPVL 189
L LLG+ P+ G+A L
Sbjct: 117 SEWVRECELLELLGI-PVLKANGEAEAL 143
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK--NMYLRNLFFR 113
MG+K LW + + L+ K +AID S WI S +A ++ + N F R
Sbjct: 1 MGIKGLWDAVAAAGVSSRVELLRGKKVAIDASFWI--SHCLASEAALRRGNDIYGVFFLR 58
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
YLL + PIFV +G+ P K T+ R ++ R R RNL
Sbjct: 59 ICYLLEKRIYPIFVFDGRTPGAKRRTLLMRNMSRAR----------RTRNL 99
>gi|334182222|ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap endonuclease GEN-like 1
gi|332189224|gb|AEE27345.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 599
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P +++ L++K +A+DLS WI T + K +LR FFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKP-HLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLK 82
>gi|407462243|ref|YP_006773560.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045865|gb|AFS80618.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
Length = 340
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
+ +KDL + E+ + +K IAID I D +++ + +
Sbjct: 3 LNLKDLV-----VREKTTLESFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDAEGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 58 LSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 56 SHLSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P LK +EKR + + +
Sbjct: 89 PPQLKSSELEKRGEKRAEA 107
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S +F+RT +L G+KP++V +GK P LK +EKR + + +
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGEKRAEA 107
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D S + + +L L +RT+ L+ G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 43 DGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETS 101
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT+ L+ G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 56 SHLSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETS 101
>gi|8570440|gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
sapiens gi|1082359 and contains XPG N-terminal PF|00752
and XPG I-region PF|00867 domains [Arabidopsis thaliana]
Length = 497
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P +++ L++K +A+DLS WI T + K +LR FFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKP-HLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLK 82
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I D + + + + +L LF+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRSDGNVLTNEAGETTSHLMGLFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQ 145
P LK + +RQ+
Sbjct: 89 PPRLKSGELARRQE 102
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF+RT ++ G+KP++V +GK P LK + +RQ+
Sbjct: 67 LFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQE 102
>gi|403272924|ref|XP_003928284.1| PREDICTED: DNA repair protein complementing XP-G cells [Saimiri
boliviensis boliviensis]
Length = 1638
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 502 NSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 547
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 512 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 547
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQSEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSAELEKR 100
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSAELEKR 100
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRRDGNVLQNDDGETTSHLMGMFYRTIRMLDSGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKR 100
>gi|321252232|ref|XP_003192334.1| hypothetical protein CGB_B6350W [Cryptococcus gattii WM276]
gi|317458802|gb|ADV20547.1| Hypothetical protein CGB_B6350W [Cryptococcus gattii WM276]
Length = 857
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK------------TIAIDLSAWICDSSTIAEHSSQK 103
MGV LW +L P + L + TI ID S WI ++ + +H +
Sbjct: 1 MGVSGLWDLLRPSAASATLHTLSREAFLDNKNGLRALTIGIDASIWIFHAA-VPQHG--E 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHD 138
N +LR +FF+ + LL V P+FV +G P +K +
Sbjct: 58 NPFLRTIFFKITALLQHPVLPVFVFDGPNKPAMKRN 93
>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374862|sp|B0DSN9.1|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 394
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLSAWIC---------DSSTIAEHSS 101
MG+K L G+L+ K I E + KT +AID S I D + +
Sbjct: 1 MGIKGLTGLLSQHAP-KAIQEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 60 ETTSHLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 101
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCLYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK +EKR + + + QA
Sbjct: 89 PPQLKSAELEKRGEKRAEAEKMLAQA 114
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S +F+RT +L G+KP++V +GK P LK +EKR + + + QA
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGEKRAEAEKMLAQA 114
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 60 DLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNL 110
DL ++ + EL+ K ++ID L ++ D + + + + +L L
Sbjct: 2 DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGL 61
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSY 170
F+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S + R
Sbjct: 62 FYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYS 121
Query: 171 LLLLGVKPIFVLEGK 185
+L + I V E K
Sbjct: 122 QAILRLSNIMVEESK 136
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +++
Sbjct: 56 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIE 115
Query: 219 GLQ 221
L+
Sbjct: 116 ELR 118
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWIC-------DSSTIAEHSSQKN 104
MG+K L IL C++ K + K +AID+S +I +
Sbjct: 1 MGIKQLSVILKEHCKKGVKEKQVGSFAFKKVAIDISNFIYQFLIAVRSGGNALGYGDTTT 60
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
+L +F+RT ++ GV PIFV +GK P LK ++KR + ++
Sbjct: 61 SHLVGMFYRTIRIVESGVTPIFVFDGKPPELKLYELKKRSDRRDKA 106
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
++ G + G S +F+RT ++ GV PIFV +GK P LK ++KR + ++
Sbjct: 47 RSGGNALGYGDTTTSHLVGMFYRTIRIVESGVTPIFVFDGKPPELKLYELKKRSDRRDKA 106
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 82 IAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHD 138
+AID S WI +T+ + + N ++ R LL G+KP+FV +G AP LK
Sbjct: 1 MAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPALKMA 60
Query: 139 TIEKRQQAQGRSAGRNVQAGSR 160
TI +R++ + +A + + R
Sbjct: 61 TIAERKKKKSGAAASHARVAER 82
Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 214
R LL G+KP+FV +G AP LK TI +R++ + +A + + R
Sbjct: 35 RICKLLFYGIKPVFVFDGGAPALKMATIAERKKKKSGAAASHARVAER 82
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
N + S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 56 ENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKR 100
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 93 SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
SS + + +L+ +F+RT L+ G+KPI+V +GK P LK + KRQ
Sbjct: 51 SSALTNQLGETTSHLQGMFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQ 102
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
+ S + +F+RT L+ G+KPI+V +GK P LK + KRQ
Sbjct: 60 ETTSHLQGMFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQ 102
>gi|390457518|ref|XP_002742570.2| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
jacchus]
Length = 1638
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 505 ENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 547
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 512 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 547
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG++ L ++ + ++ I +K IAID S + D + +A S +
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGAALANSSGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L L + + G+KPIFV +GK P K +EKR+QA+
Sbjct: 61 VTSHLVGLLAKVIRMAEAGIKPIFVFDGKPPEDKQGELEKRRQAR 105
>gi|294932999|ref|XP_002780547.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
gi|239890481|gb|EER12342.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
Length = 427
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 56 MGVKDLWGIL-----TPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK------- 103
MG+K L+ L + I E +P E K +AID S W+ T + +
Sbjct: 1 MGIKGLYDFLKAQAPSAIRECRP-EEFAGKRLAIDASIWMYQFKTKIRYEDKMLTNSEGV 59
Query: 104 -NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQA 146
+ RT +L LG++PIFV +G P +K+D + E+R QA
Sbjct: 60 CTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQA 104
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI-EKRQQA 200
RT +L LG++PIFV +G P +K+D + E+R QA
Sbjct: 67 FLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQA 104
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSSELEKR 100
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKR 100
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS- 150
D + + + + +L LFFR + + GV P+F+ +GK P K+ TI +R+ A+ ++
Sbjct: 44 DGTPLMDSEGRVTSHLSGLFFRLTNFIEKGVSPVFIFDGKPPEFKNRTISERRAAKEQAE 103
Query: 151 --------AGRNVQAGSRARN 163
AG N A S AR+
Sbjct: 104 AGLKEALKAGDNQAAFSYARS 124
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LFFR + + GV P+F+ +GK P K+ TI +R R+A +AG + LK
Sbjct: 57 SHLSGLFFRLTNFIEKGVSPVFIFDGKPPEFKNRTISER-----RAAKEQAEAGLKEALK 111
>gi|357507117|ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P + L++K +AIDLS WI + A + K +LR FFRT
Sbjct: 1 MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNN-AIKTHVKKPHLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLKHDT----------IEKRQ---QAQGRSAGRNVQAGSR 160
L G P+FV++G LK IE +G SAGRN +
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRN---STF 116
Query: 161 ARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
+R + LLG+ P+ +G+A L
Sbjct: 117 SRCVQECVELAKLLGI-PVLKAKGEAEAL 144
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQK 103
MGVKDL ++ +P R K + +A+D S + D S + S +
Sbjct: 1 MGVKDLSKVIGDHSPGSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP++V +GK P +K +EKR
Sbjct: 61 TSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKR 100
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+F+RT ++ G+KP++V +GK P +K +EKR
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKR 100
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 77 LQDKTIAID-LSAWICDSSTIAEHSSQKNM--------YLRNLFFRTSYLLLLGVKPIFV 127
L K IAID L+A STI + M +L LF+RT L+ G+KP +V
Sbjct: 19 LYGKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYV 78
Query: 128 LEGKAPVLKHDTIEKRQQAQ 147
+GK P K +EKR++A+
Sbjct: 79 FDGKPPEFKRKELEKRREAR 98
>gi|402902426|ref|XP_003914105.1| PREDICTED: DNA repair protein complementing XP-G cells [Papio
anubis]
Length = 1814
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 680 NSIENAHLLTLFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 725
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++P+FV +G AP+LK T+ KR+Q
Sbjct: 690 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQ 725
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 56 MGVKDLWGIL----TPICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+ DL ++ + + + L + +AID S I + S + +
Sbjct: 1 MGIHDLSKVIGDNASHAVKETEMKNLFGRKVAIDASMSIYQFLIAVRSEGSNLTNAEGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
+L +F+RT ++ GVKP++V +GK P LK + E+R++AQ +
Sbjct: 61 TSHLSGIFYRTIRMVNNGVKPVYVFDGKPPTLKSGELAKRTERRKEAQSK 110
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 149 RSAGRNV-----QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQ 199
RS G N+ + S +F+RT ++ GVKP++V +GK P LK + E+R++
Sbjct: 47 RSEGSNLTNAEGETTSHLSGIFYRTIRMVNNGVKPVYVFDGKPPTLKSGELAKRTERRKE 106
Query: 200 AQGR 203
AQ +
Sbjct: 107 AQSK 110
>gi|409079272|gb|EKM79634.1| hypothetical protein AGABI1DRAFT_114134 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGI---LTPICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+ L P R+ I L + +AID S I D ++ + +
Sbjct: 1 MGIKGLTGLISQLAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKR 101
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + ++ + +
Sbjct: 1 MGIKGLNAIISEHVPTAVRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTETGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PV+K + KR + + + +A +A
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRREETEKKLAEAIDQAE 120
Query: 163 NL 164
+
Sbjct: 121 KM 122
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ + + + S +F+RT ++ G+KP +V +GK PV+K + KR +
Sbjct: 47 RQQDGAQLSTETGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRRE 106
Query: 203 RSAGRNVQAGSRA 215
+ + +A +A
Sbjct: 107 ETEKKLAEAIDQA 119
>gi|19112842|ref|NP_596050.1| exonuclease I Exo1 [Schizosaccharomyces pombe 972h-]
gi|1706728|sp|P53695.1|EXO1_SCHPO RecName: Full=Exodeoxyribonuclease 1; AltName:
Full=Exodeoxyribonuclease I; Short=EXO I;
Short=Exonuclease I
gi|703466|gb|AAC41648.1| exonuclease [Schizosaccharomyces pombe]
gi|4007793|emb|CAA22433.1| exonuclease I Exo1 [Schizosaccharomyces pombe]
Length = 571
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH----SSQKNMYLRNLF 111
MG+K L G+L P+ + + E KT+ +D W+ + H + + + YL+
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ L GVKP+ V +G K T +KR++
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKE 94
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P+ RK I + +AID S + D + + +
Sbjct: 1 MGIKGLTAIISENAPLAIRKSEIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK P LK + KR + + + +A +A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPTLKSHELSKRTSRREETEKKLAEAVDQAE 120
Query: 163 NL 164
+
Sbjct: 121 KM 122
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ + S +F+RT ++ G+KP +V +GK P LK + KR +
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPTLKSHELSKRTSRRE 106
Query: 203 RSAGRNVQAGSRA 215
+ + +A +A
Sbjct: 107 ETEKKLAEAVDQA 119
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + + +L + FRT L G++P+FV +GK P K +TI +R++ + R+
Sbjct: 44 DGTPLMNGAGRITSHLSGILFRTVNFLEKGIRPVFVFDGKPPEFKQETINERREHRARA 102
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S + FRT L G++P+FV +GK P K +TI +R++ + R+
Sbjct: 57 SHLSGILFRTVNFLEKGIRPVFVFDGKPPEFKQETINERREHRARA 102
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P+ R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRAE 102
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRAE 102
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L LF+RT L+ +KP++V +GK PVLK +EKR Q
Sbjct: 58 DGETTSHLSGLFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQ 103
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPSAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+ + S LF+RT L+ +KP++V +GK PVLK +EKR Q
Sbjct: 58 DGETTSHLSGLFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQ 103
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +AID S + D + + +L +F+RT L+ G+KP++V +G
Sbjct: 29 RKVAIDASMCLYQYLIAVRQSDGQQLTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K PVLK +EKR
Sbjct: 89 KPPVLKGGELEKR 101
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 96 IAEHSSQ--KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EH+ + + L+NLF R V + L I RQ +
Sbjct: 10 IKEHAPEAFREFQLKNLFGRK------------VAIDASMCLYQYLIAVRQSDGQQLTSE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKR 101
>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|317376166|sp|C4QZ20.1|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Komagataella pastoris CBS 7435]
Length = 373
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D +A + +L F+RT ++ G+KP +V +GK PVLK +EKR
Sbjct: 50 DGQQLANEEGETTSHLMGFFYRTIRMVGYGIKPCYVFDGKPPVLKGGELEKR 101
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + A + S F+RT ++ G+KP +V +GK PVLK +EKR
Sbjct: 47 RQQDGQQLANEEGETTSHLMGFFYRTIRMVGYGIKPCYVFDGKPPVLKGGELEKR 101
>gi|58262794|ref|XP_568807.1| hypothetical protein CNB01350 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223457|gb|AAW41500.1| hypothetical protein CNB01350 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 858
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK------------TIAIDLSAWICDSSTIAEHSSQK 103
MGV LW +L P + L + T+ ID S WI ++ + +H +
Sbjct: 1 MGVSGLWDLLRPSAASVTLHTLSKEAFLENKNGLRALTVGIDASIWIFHAA-VPQHG--E 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHD 138
N +LR +FF+ + LL V P+FV +G P +K +
Sbjct: 58 NPFLRTIFFKITALLQHPVLPVFVFDGPNKPAMKRN 93
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P + E+++ + +AID S I D + S
Sbjct: 1 MGIKHLYQI---ISENAPDAIKVGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+ +L F+RT ++ G+KP++V +G P LK + KR + +A ++ +A
Sbjct: 58 GETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHEEA 114
>gi|134108512|ref|XP_777207.1| hypothetical protein CNBB4370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259892|gb|EAL22560.1| hypothetical protein CNBB4370 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 893
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK------------TIAIDLSAWICDSSTIAEHSSQK 103
MGV LW +L P + L + T+ ID S WI ++ + +H +
Sbjct: 1 MGVSGLWDLLRPSAASVTLHTLSKEAFLENKNGLRALTVGIDASIWIFHAA-VPQHG--E 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHD 138
N +LR +FF+ + LL V P+FV +G P +K +
Sbjct: 58 NPFLRTIFFKITALLQHPVLPVFVFDGPNKPAMKRN 93
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 77 LQDKTIAID-LSAWICDSSTIAEHSSQKNM--------YLRNLFFRTSYLLLLGVKPIFV 127
L K IAID L+A STI + M +L LF+RT L+ G+KP +V
Sbjct: 19 LYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYV 78
Query: 128 LEGKAPVLKHDTIEKRQQAQ 147
+GK P K +EKR++A+
Sbjct: 79 FDGKPPEFKRKELEKRREAR 98
>gi|348670592|gb|EGZ10413.1| hypothetical protein PHYSODRAFT_355246 [Phytophthora sojae]
Length = 165
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MG+ L +L I E K I + + +T+AID W+ C + K Y+
Sbjct: 1 MGISGLLPVLKSITETKSIEQYRGRTLAIDGYCWLHRAIYSCSQEICLGQETDK--YVTY 58
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG-----SRARNL 164
R + LL GV P V +G +K T E+R++A+ ++ VQ S AR
Sbjct: 59 FMDRITTLLHNGVTPYVVFDGGPLPMKKGTEEERRKARQKNRELGVQHYNNKRFSEARKC 118
Query: 165 FFRTS 169
F R +
Sbjct: 119 FIRAA 123
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + ++ S +
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTESGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK P+LK ++KR + + + +A +A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPILKSFELKKRSDKRVDTEKKLEEAVDQAE 120
Query: 163 NL 164
L
Sbjct: 121 KL 122
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + + + + S +F+RT ++ G+KP +V +GK P+LK ++KR
Sbjct: 47 RQQDGAQLSTESGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPILKSFELKKR 101
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D + + +L +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 14 DGQQLTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKR 65
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQ + + + S +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 11 RQSDGQQLTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKR 65
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 74 IWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I EL+ K I++D L ++ D + + +H+ + +L L +RT+ L G+KP
Sbjct: 16 IKELKGKIISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKP 75
Query: 125 IFVLEGKAPVLKHDTIEKR 143
++V +G+ P LK TI +R
Sbjct: 76 VYVFDGRPPELKMRTIGER 94
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 74 IWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I EL+ K I++D L ++ D + + +H+ + +L L +RT+ L G+KP
Sbjct: 16 IKELKGKIISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKP 75
Query: 125 IFVLEGKAPVLKHDTIEKR 143
++V +G+ P LK TI +R
Sbjct: 76 VYVFDGRPPELKMRTIGER 94
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 61 LWGILTPICERKP-------IWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNM 105
+ G+ IC++ P I + +AID S + D + + +
Sbjct: 3 ILGLSKLICDKAPSAVKENEIKNYFGRKVAIDASMAVYQFLIAIRQDGNQLTNEDGEVTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
++ LF+RT LL G+KP+FV +GK P +K + E+R+QA+
Sbjct: 63 HIAGLFYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERREQAE 108
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 86 LSAWICDSSTIAEHSSQ-KNMYLRNLFFRTS---YLLLLGVKPIFVLEGKAPVLKHDTIE 141
LS ICD + A ++ KN + R + S Y L+ ++
Sbjct: 6 LSKLICDKAPSAVKENEIKNYFGRKVAIDASMAVYQFLIAIR------------------ 47
Query: 142 KRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKR 197
Q + + + S LF+RT LL G+KP+FV +GK P +K + E+R
Sbjct: 48 ---QDGNQLTNEDGEVTSHIAGLFYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERR 104
Query: 198 QQAQ 201
+QA+
Sbjct: 105 EQAE 108
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ N + S +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 47 RQQDGGQLTNENGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKR 101
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHAPTAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKR 101
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 81 TIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
TIAI S++ S++ + ++ L R S LL G+KP+FV + K P LK T+
Sbjct: 43 TIAIRDSSYF---SSLVNSKGESTSHIYGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTL 99
Query: 141 EKRQQ 145
+KR+Q
Sbjct: 100 DKRRQ 104
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ S L R S LL G+KP+FV + K P LK T++KR+Q
Sbjct: 61 ESTSHIYGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQ 104
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P C ++ +E + IA+D S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 63 SHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
>gi|443924990|gb|ELU43928.1| FEN-1 endonuclease [Rhizoctonia solani AG-1 IA]
Length = 532
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L G+L+ E P I L + +AID S I D +
Sbjct: 1 MGIKGLTGLLS---EHAPASIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTLRMVDHGIKPAYVFDGKPPDLKSGVLSKR 101
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 54 AIMGVKDLWGILTPI----CERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSS 101
I+G+ L + P CE K ++ + IAID S + + + +
Sbjct: 2 GILGLSKLIADVAPEAIKECELKHLF---GRKIAIDASMCLYQFLIAVRSEGAQLTSVDG 58
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+ +L F+RT L+ G+KP++V +GK P LK + KR + + A + +QA A
Sbjct: 59 ETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERR-EEAQKQLQAAEEA 117
Query: 162 RNL 164
N+
Sbjct: 118 GNV 120
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
F+RT L+ G+KP++V +GK P LK + KR + + A + +QA A
Sbjct: 68 FYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERR-EEAQKQLQAAEEA 117
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 81 TIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
TIAI S++ S++ + ++ L R S L G+KP+FV + K P LK T+
Sbjct: 43 TIAIRDSSYF---SSLVNSKGESTSHIYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTL 99
Query: 141 EKRQQ 145
EKR+Q
Sbjct: 100 EKRRQ 104
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ---GRSAGRNVQAG 212
++ S L R S L G+KP+FV + K P LK T+EKR+Q + S + + G
Sbjct: 61 ESTSHIYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTLEKRRQQREEANASLKKAISEG 120
Query: 213 SRARLKGL 220
+ +K L
Sbjct: 121 DKESVKKL 128
>gi|392576369|gb|EIW69500.1| hypothetical protein TREMEDRAFT_39085 [Tremella mesenterica DSM
1558]
Length = 791
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK------------TIAIDLSAWICDSSTIAEHSSQK 103
MGV LW +L P R + L + TI ID S W+ + + +H +
Sbjct: 1 MGVPGLWDLLRPAATRTSLSTLARQAVLSNHNGHRALTIGIDASIWMFHAQ-VPQHG--E 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG 130
N +LR +F++ + LL V P+FV +G
Sbjct: 58 NPFLRTIFYKITQLLQQPVLPVFVFDG 84
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
EL+ K ++ID L ++ D + + + + +L LF+RT +L GV PI+
Sbjct: 15 ELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIY 74
Query: 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGK 185
V +GK P K + +E+R++A+ + + +A S + R +L + I V E K
Sbjct: 75 VFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESK 133
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKGLQ 221
LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +++ L+
Sbjct: 58 LFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELR 115
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS- 150
D + + + + +L LF+RT L+ G+KP +V +GK P K +EKR++A+ +
Sbjct: 43 DGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKRELEKRKEAREEAE 102
Query: 151 -------AGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
A +++ + R + +L+ K + L G PV++ + + Q A
Sbjct: 103 IKWKEALAKGDIEEARKYAQRATRVNEMLIEDAKKLLELMG-IPVIQAPSEGEAQAAYMA 161
Query: 204 SAGRNVQAGSR 214
S G+ + S+
Sbjct: 162 SKGKVYASASQ 172
>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
gi|317376167|sp|A7TJ59.1|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 377
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSDIKTFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK + KR + + + +A +A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETEKKLQEATDQAE 120
Query: 163 NL 164
+
Sbjct: 121 KM 122
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKR 101
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 77 LQDKTIAIDLSAWICD-SSTIAEHSSQK--NMYLRNLFFRTSYLLLLGVKPIFVLEGKAP 133
++ K +AID S WI +T+ + + N ++ R + LL G+KP+FV +G AP
Sbjct: 11 VEGKVMAIDSSIWIYQFQATMRDKEGRGLVNAHVLGFLRRIAKLLFYGIKPVFVFDGGAP 70
Query: 134 VLKHDTIEKRQQAQGRSA 151
LK T+ +R++ + +A
Sbjct: 71 TLKRATLNERRRKKSGAA 88
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 167 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
R + LL G+KP+FV +G AP LK T+ +R++ + +A
Sbjct: 50 RIAKLLFYGIKPVFVFDGGAPTLKRATLNERRRKKSGAA 88
>gi|58266500|ref|XP_570406.1| flap endonuclease [Cryptococcus neoformans var. neoformans JEC21]
gi|134111280|ref|XP_775782.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818103|sp|P0CS61.1|FEN1_CRYNB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|338818104|sp|P0CS60.1|FEN1_CRYNJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|50258446|gb|EAL21135.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226639|gb|AAW43099.1| flap endonuclease, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 453
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+L+ P C + + L + +AID S I D + S
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKR 101
>gi|410722033|ref|ZP_11361349.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
gi|410597930|gb|EKQ52534.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
Length = 328
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGVK I++P E +L K +A+D + I D + + + + + +
Sbjct: 1 MGVK-FKDIVSP--EEIRFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
+ +RTS L+ G+KPI+V +G++ LK +T +KR++ + S
Sbjct: 58 FSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEES 101
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG 212
+N + S + +RTS L+ G+KPI+V +G++ LK +T +KR++ + S + +A
Sbjct: 50 QNGRITSHFSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERKWKEAL 109
Query: 213 SRARL 217
RL
Sbjct: 110 EEGRL 114
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLSAWIC---------DSSTIAEHSS 101
MG+K L +++ + K I +L+ K +A+D S I D + S
Sbjct: 1 MGIKGLTNLISDVAP-KAIRQLEMKNLFGRKVAVDASMSIYQFLIAVRQQDGQQLMNESG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR--QQAQGRSAGRNVQ 156
+ +L F+RT ++ G+KP +V +GK P LK ++KR ++A+ G + +
Sbjct: 60 ETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRAEATEEGEDAK 116
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR--QQA 200
RQQ + + + S F+RT ++ G+KP +V +GK P LK ++KR ++A
Sbjct: 47 RQQDGQQLMNESGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRA 106
Query: 201 QGRSAGRNVQ 210
+ G + +
Sbjct: 107 EATEEGEDAK 116
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 80 KTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +AID S + + ST+ + ++ F+RT L+ GVKPI+V +G
Sbjct: 29 RVVAIDASILVYQFISAVRDQEGSTLVNEYGETTSHIIGTFYRTIKLMTSGVKPIYVFDG 88
Query: 131 KAPVLKHDTIEKRQ 144
K P +K + ++KRQ
Sbjct: 89 KPPEMKTEELKKRQ 102
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
F+RT L+ GVKPI+V +GK P +K + ++KRQ
Sbjct: 69 FYRTIKLMTSGVKPIYVFDGKPPEMKTEELKKRQ 102
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT LL G+KP++V +GK P K IE R++ + ++
Sbjct: 47 DGTPLMDREGRITSHLSGLFYRTINLLESGIKPVYVFDGKPPEFKLAEIESRRKTREKAM 106
Query: 152 GRNVQAGSRARN 163
V+A R
Sbjct: 107 EEVVKALKEGRK 118
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT LL G+KP++V +GK P K IE R++ + ++ V+A R
Sbjct: 60 SHLSGLFYRTINLLESGIKPVYVFDGKPPEFKLAEIESRRKTREKAMEEVVKALKEGR 117
>gi|344233741|gb|EGV65611.1| PIN domain-like protein [Candida tenuis ATCC 10573]
Length = 376
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MGVK L ++ + P I E Q K IAID S + D +
Sbjct: 1 MGVKGLNALIK---DHSPGAIKEFQLKNLFGRKIAIDASMCLYQYLIAVRQGDGQNLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +GK PVLK +EKR
Sbjct: 58 KGEITSHLSGMFYRTLRMVENGIKPVYVFDGKPPVLKGGELEKR 101
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT ++ G+KP++V +GK PVLK +EKR
Sbjct: 63 SHLSGMFYRTLRMVENGIKPVYVFDGKPPVLKGGELEKR 101
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+ +L +L P C R+ + + + +AID S A + + + + +
Sbjct: 1 MGIHNLAKLLADQAPHCVRENVIKAYFGRKVAIDASMSMYQFLIAVRSEGNQLMNDAGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L F+RT +L G+KP++V +GK PV+K + KR A+ A ++ A + A
Sbjct: 61 TSHLVGFFYRTIRMLENGIKPVYVFDGKPPVMKSGELAKR-TARREEAQASLDAATEA 117
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEK----RQQAQGRSAGRNVQAGSRARLKG 219
F+RT +L G+KP++V +GK PV+K + K R++AQ S +AG ++
Sbjct: 67 FFYRTIRMLENGIKPVYVFDGKPPVMKSGELAKRTARREEAQA-SLDAATEAGESETMEK 125
Query: 220 LQ 221
Q
Sbjct: 126 FQ 127
>gi|426196176|gb|EKV46105.1| hypothetical protein AGABI2DRAFT_193982 [Agaricus bisporus var.
bisporus H97]
Length = 429
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+++ P R+ I L + +AID S I D ++ + +
Sbjct: 1 MGIKGLTGLISQHAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKR 101
>gi|340344625|ref|ZP_08667757.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519766|gb|EGP93489.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 341
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 68 ICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLL 118
+ E+ + K IAID I D +++ + +L L +R L
Sbjct: 10 VREKTTLESFSSKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFL 69
Query: 119 LLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
LG+KP++V +GK P LK IE+R+Q
Sbjct: 70 SLGIKPVYVFDGKPPSLKTAEIERRKQ 96
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 56 SHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|405120385|gb|AFR95156.1| flap endonuclease [Cryptococcus neoformans var. grubii H99]
Length = 453
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+L+ P C + + L + +AID S I D + S
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKR 101
>gi|397524400|ref|XP_003832181.1| PREDICTED: DNA repair protein complementing XP-G cells [Pan
paniscus]
Length = 1754
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 616 NSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 661
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 626 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 661
>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
6054]
gi|317376214|sp|A3M056.2|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|149388033|gb|ABN68459.2| Exodeoxyribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 381
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK L + I E P + L + +AID S + D +
Sbjct: 1 MGVKGLNQL---IKEHSPGAFKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 SGETTSHLSGMFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPGAFKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 SGETTSHLSGMFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|336365482|gb|EGN93832.1| hypothetical protein SERLA73DRAFT_188945 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378041|gb|EGO19200.1| hypothetical protein SERLADRAFT_479560 [Serpula lacrymans var.
lacrymans S7.9]
Length = 407
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L G+ I E P I L + +AID S I D +
Sbjct: 1 MGIKGLTGL---IAEYAPKAITEHDIKTLFSRKVAIDASMSIYQFLIAVRQKDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP++V +GK P +K + KR
Sbjct: 58 AGETTSHLMGFFYRTIRIVENGIKPVYVFDGKPPEMKAGVLSKR 101
>gi|170102915|ref|XP_001882673.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642570|gb|EDR06826.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 567
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +D+S WIC + A + +N LR +F+R +LL + P+FV +G
Sbjct: 40 VGVDVSVWICQAQAAAHSQTGENPGLRTIFYRICHLLANSILPVFVEDG 88
>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
Length = 1611
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 473 NSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 518
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 483 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 518
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P C ++ +E + IA+D S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 63 SHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
>gi|321257144|ref|XP_003193485.1| flap endonuclease [Cryptococcus gattii WM276]
gi|317459955|gb|ADV21698.1| flap endonuclease, putative [Cryptococcus gattii WM276]
Length = 453
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+L+ P C + + L + +AID S I D + S
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKR 101
>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
Length = 1640
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 502 NSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 547
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 512 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 547
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D + + +L +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 14 DGQQLTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKR 65
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + + + S +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 11 RQQDGQQLTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKR 65
>gi|333986804|ref|YP_004519411.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
gi|333824948|gb|AEG17610.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
Length = 328
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMY 106
MGVK I+ P E +L K +A+D + I D + + +H+ +
Sbjct: 1 MGVK-FRDIVNP--EPLGFNDLNGKIVALDAANVIYQFLSSIRQVDGTPLMDHNKNITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
+ +RTS L+ G+KP++V +G + LK T KR++ + +S R
Sbjct: 58 FSGILYRTSSLIEKGIKPVYVFDGISSYLKKGTQAKRREVKEKSEKR 104
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
N S + +RTS L+ G+KP++V +G + LK T KR++ + +S R
Sbjct: 50 HNKNITSHFSGILYRTSSLIEKGIKPVYVFDGISSYLKKGTQAKRREVKEKSEKR 104
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D + + +L +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 50 DGQQLTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKR 101
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 96 IAEHSSQ--KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EH+ K L+NLF R V + L I RQQ +
Sbjct: 10 IKEHAPDAFKEYQLKNLFGRK------------VAIDASMCLYQYLIAVRQQDGQQLTSE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKR 101
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D S + + +L L +RT+ L+ G+KP+FV +GK P +K T+ +R++
Sbjct: 43 DGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKE 96
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +RT+ L+ G+KP+FV +GK P +K T+ +R++
Sbjct: 56 SHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKE 96
>gi|302688649|ref|XP_003034004.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
gi|300107699|gb|EFI99101.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
Length = 452
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICERK----PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L G+L+ + I L + +AID S I D + + +
Sbjct: 1 MGIKGLTGLLSEHAPKSMKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L LF+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 ITSHLMGLFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKR 101
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D S + + +L L +RT+ L+ G+KP+FV +GK P +K T+ +R++
Sbjct: 43 DGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKE 96
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +RT+ L+ G+KP+FV +GK P +K T+ +R++
Sbjct: 56 SHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKE 96
>gi|407464594|ref|YP_006775476.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047782|gb|AFS82534.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
Length = 340
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
+ +KDL I E+ + ++ IAID I D +++ + +
Sbjct: 3 LNLKDLV-----IREKTTLEAFSNRVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L L +R L LG+KP++V +G+ P LK IE+R+Q
Sbjct: 58 LSGLLYRNVNFLSLGIKPVYVFDGRPPSLKTAEIERRKQ 96
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
L +R L LG+KP++V +G+ P LK IE+R+Q
Sbjct: 61 LLYRNVNFLSLGIKPVYVFDGRPPSLKTAEIERRKQ 96
>gi|393229980|gb|EJD37593.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 56 MGVKDLWGILTPICERKPIWEL------------QDKTIAIDLSAWICDSSTIAEHSSQ- 102
MGVK LW +L P E K + +L + + ID+S W+ +
Sbjct: 1 MGVKGLWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMKVFDGTPLRV 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+ + L+ LFFR + LL + + P+FV +G K P K
Sbjct: 61 EQLGLQMLFFRCARLLAMPILPLFVFDGLKRPAYK 95
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 70 ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
E+ + +L+ TIAID S WI D + + + + +L + RTS L+
Sbjct: 12 EKLELKDLEGLTIAIDASNWIYQFLSSIRQRDGTPLMDRKGRVTSHLVGILHRTSALVEN 71
Query: 121 GVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
+KP++V +GK+ LK +TI +R + + + R
Sbjct: 72 NIKPVYVFDGKSLALKSETISERTRMRLEAEKR 104
>gi|442753119|gb|JAA68719.1| Putative flap structure-specific endonuclease 1 [Ixodes ricinus]
Length = 113
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + +++ + + +L F+RT ++ G+KP++V +GK
Sbjct: 29 RKIAIDASMCLYQFLIAVRQENNMLTNSDGETTSHLVGFFYRTIRMIENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQ-QAQGRSAGR 153
P +K +EKRQ + +GR+ R
Sbjct: 89 PPGMKSSELEKRQRKTRGRTRER 111
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ-QAQGRSAGR 207
F+RT ++ G+KP++V +GK P +K +EKRQ + +GR+ R
Sbjct: 67 FFYRTIRMIENGIKPVYVFDGKPPGMKSSELEKRQRKTRGRTRER 111
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 72 KPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
K I + K IA+D S + S L +FFR L +KP+FV +G+
Sbjct: 21 KDISDYTGKAIALDTSIVVNQFRAATPSLSP----LIGVFFRALTFLEHDIKPVFVFDGR 76
Query: 132 APVLKHDTIEKRQQAQG-RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
P K +EKR ++ G RS R A S R+ L L+GV P+ G A L
Sbjct: 77 PPGEKRAVLEKRAESAGWRSPNRKGTASSSTRDCL---QLLKLIGV-PVIQAPGDAEAL 131
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG-RSAGRNVQAGSRAR 216
+FFR L +KP+FV +G+ P K +EKR ++ G RS R A S R
Sbjct: 55 VFFRALTFLEHDIKPVFVFDGRPPGEKRAVLEKRAESAGWRSPNRKGTASSSTR 108
>gi|238597041|ref|XP_002394219.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
gi|215462894|gb|EEB95149.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
Length = 156
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L G+ I E P I E + KT +AID S I D +
Sbjct: 1 MGIKGLTGL---ISEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKR 101
>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D + + +L +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 14 DGQQLTSEDGETTSHLLGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKR 65
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQ + + + S +F+RT L+ G+KP++V +GK PVLK +EKR
Sbjct: 11 RQSDGQQLTSEDGETTSHLLGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKR 65
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P C ++ +E + IA+D S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKR 101
>gi|324508870|gb|ADY43740.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 524
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IA+D W+C+ ++A S+ + +L + R
Sbjct: 1 MGVTGMWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYNR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHD 138
L+ G++PI V + + + D
Sbjct: 61 CRSLIEKGIEPIVVFDAVDDIARQD 85
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L K IA+D L ++ D + + + +
Sbjct: 1 MGVTELGKLIGKDIRREVKLENLAGKCIALDAYNSLYQFLASIRQPDGTPLMDRVGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L LF+RT L+ G+KP++V +GK P K IE+R++ + ++ ++A R
Sbjct: 61 HLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGRK 118
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G+KP++V +GK P K IE+R++ + ++ ++A R
Sbjct: 60 SHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGR 117
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 54 AIMGVKDLWGILTPICERKPIWELQD---KTIAIDLSAWIC--------DSSTIAEHSSQ 102
I G+ L + P R+ EL++ + IAID S I D + S +
Sbjct: 2 GIQGLAKLIADIAPGAIRE--QELKNYFGRKIAIDASMSIYQFLIAVRHDGQVLQTESGE 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP++V +GK P +K + KR + + + + QA
Sbjct: 60 TTSHLMGMFYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQLAQA 114
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P +K + KR + + + + QA
Sbjct: 67 MFYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQLAQA 114
>gi|324509011|gb|ADY43797.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 534
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGV +W + + I L++K IA+D W+C+ ++A S+ + +L + R
Sbjct: 1 MGVTGMWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYNR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHD 138
L+ G++PI V + + + D
Sbjct: 61 CRSLIEKGIEPIVVFDAVDDIARQD 85
>gi|317374947|sp|A8NQC2.3|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 458
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L G+L E P I L + +AID S I D +
Sbjct: 1 MGIKGLTGLLN---EHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKR 101
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 56 MGVKDLWGILTP--ICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFF- 112
MGV LW + +C R I L + AID S WI + +++ + ++ + +FF
Sbjct: 1 MGVSGLWDAVAAAGLCAR--IEALHGRKCAIDASFWIA-HALVSQENLRRGFDIYAIFFL 57
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
+ YLL ++PIFV +G P K T+ KR+ + R
Sbjct: 58 KICYLLETRIRPIFVFDGIPPDAKRRTLLKRKLMRER 94
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D S + + S + +L LF+RT L+ G+KP++V +G P LK +E+R+ + +A
Sbjct: 47 DGSPLMDSSGRITSHLSGLFYRTINLVEEGIKPVYVFDGNPPELKIKELERRKALREEAA 106
Query: 152 GRNVQA 157
+ +A
Sbjct: 107 KKYEEA 112
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S LF+RT L+ G+KP++V +G P LK +E+R+ + +A + +A
Sbjct: 60 SHLSGLFYRTINLVEEGIKPVYVFDGNPPELKIKELERRKALREEAAKKYEEA 112
>gi|74612809|sp|Q76F73.1|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
Length = 458
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L G+L E P I L + +AID S I D +
Sbjct: 1 MGIKGLTGLLN---EHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKR 101
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 54 AIMGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWIC--------DSSTIAEHSSQKN 104
I+G+ L G P ++ ++ + +A+D S I D S + +
Sbjct: 2 GILGLSKLLGDYAPSAMKENEFKNYFGRKVAVDASMCIYQFLIAVRQDGSNLMNEDGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK P +K + KR++
Sbjct: 62 SHLMGMFYRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKE 102
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 97 DGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAE 156
Query: 152 G---RNVQAGS 159
R V+AG
Sbjct: 157 ARYRRAVEAGE 167
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNV 209
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R V
Sbjct: 104 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRAV 163
Query: 210 QAGS 213
+AG
Sbjct: 164 EAGE 167
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 13 DGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAE 72
Query: 152 G---RNVQAGS 159
R V+AG
Sbjct: 73 ARYRRAVEAGE 83
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNV 209
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R V
Sbjct: 20 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAV 79
Query: 210 QAGS 213
+AG
Sbjct: 80 EAGE 83
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 56 MGVKDLWGILTP--ICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKN 104
MGVK G + P E+ + L K IA D L ++ D + + +
Sbjct: 1 MGVK--IGDIIPGEAVEQTSLKRLSGKAIAFDAYNILYQFLATIRGPDGRPLMDRRGRVT 58
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L LFFRT L G+ P++V +G+ P K+ TIEKR A+ AG+ +A
Sbjct: 59 SHLSGLFFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAR-EEAGKLYEA 110
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
R + S LFFRT L G+ P++V +G+ P K+ TIEKR A+ AG+ +A
Sbjct: 53 RRGRVTSHLSGLFFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAR-EEAGKLYEA 110
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 13 DGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAE 72
Query: 152 G---RNVQAGS 159
R V+AG
Sbjct: 73 ARYRRAVEAGE 83
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNV 209
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R V
Sbjct: 20 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAV 79
Query: 210 QAGS 213
+AG
Sbjct: 80 EAGE 83
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L + IA+D L ++ D + + + +
Sbjct: 1 MGVTELGKLIGREARREIKLENLAGRCIALDAYNALYQFLASIRQPDGTPLMDRQGRVTS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L LF+RT L+ G+KP++V +GK P K IE R++ + ++ V+A
Sbjct: 61 HLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKA 112
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
R + S LF+RT L+ G+KP++V +GK P K IE R++ + ++ V+A
Sbjct: 54 RQGRVTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKA 112
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 54 AIMGVKDLWGILTP-ICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I+G+ L + P + K + + +AID S + + + +A +
Sbjct: 2 GILGLAKLIADIAPHAIKEKELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLATVDGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L +F+RT L+ G+KPI+V +GK P LK + KR + + A + +QA A N
Sbjct: 62 SHLMGMFYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRD-EAQKLLQAAEEAGN 119
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
+F+RT L+ G+KPI+V +GK P LK + EKR +AQ
Sbjct: 67 MFYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRDEAQ 108
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+ L ++ IC + I + +AID S + + + + +
Sbjct: 1 MGILGLSKLIADICPQAIKESDIKNYFGRKVAIDASMCLYQFLIAVRAEGAQLTNVDGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGS 159
+L +F+RT LL G+KP++V +GK P+ K + E+R+ AQ ++ + +AG+
Sbjct: 61 TSHLMGMFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQ-KALEKATEAGN 119
Query: 160 RA 161
A
Sbjct: 120 EA 121
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGSRARL 217
+F+RT LL G+KP++V +GK P+ K + E+R+ AQ ++ + +AG+ A +
Sbjct: 67 MFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQ-KALEKATEAGNEADM 123
>gi|348686536|gb|EGZ26351.1| hypothetical protein PHYSODRAFT_540882 [Phytophthora sojae]
Length = 398
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MG+ L +L I E K I + + +T+AID W+ C + K Y+
Sbjct: 1 MGISGLLPVLKSITETKSIEQYRGRTLAIDGYCWLHRAIYSCSQEICLGQETDK--YVTY 58
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG-----SRARNL 164
R + LL GV P V +G +K T E+R++A+ ++ VQ S AR
Sbjct: 59 FMDRITTLLHNGVTPYVVFDGGPLPMKKGTEEERRKARQKNRELGVQHYNNKRFSEARRC 118
Query: 165 FFRTS 169
F R +
Sbjct: 119 FIRAA 123
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K+L+ I I E P I E + K +AID S I D + S
Sbjct: 1 MGIKNLYQI---IKEEAPNAIKEGEIKAHFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ 156
+ +L LF+RT ++ G+KP++V +G P LK + KR Q + + A N++
Sbjct: 58 GETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRK-QEANENLE 112
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S +F++ Y+L + PI+V +GK P LKH T E+R++ + ++ + A L+
Sbjct: 56 STYNGIFYKNIYMLENDITPIWVFDGKPPELKHKTREERKKVKEKAMEEYISAKEEGNLE 115
Query: 219 GLQ 221
+Q
Sbjct: 116 DMQ 118
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 76 ELQDKTIAIDL---------SAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
+L++KT+AID S + D S + + +F++ Y+L + PI+
Sbjct: 18 DLKNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTYNGIFYKNIYMLENDITPIW 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
V +GK P LKH T E+R++ + ++ + A
Sbjct: 78 VFDGKPPELKHKTREERKKVKEKAMEEYISA 108
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 60 DLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNL 110
DL I+ + + E++ K I+ID I D + + + + +L L
Sbjct: 2 DLGEIVEDVKREINLNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGL 61
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F+RT ++ G+ PIFV +GK P K + IE+R++
Sbjct: 62 FYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKR 96
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF+RT ++ G+ PIFV +GK P K + IE+R++
Sbjct: 56 SHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKR 96
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 13 DGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAE 72
Query: 152 GRNVQA 157
R +A
Sbjct: 73 ARYRRA 78
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R +A
Sbjct: 20 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRA 78
>gi|393225781|gb|EJD33677.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 56 MGVKDLWGILTPICERKPIWEL------------QDKTIAIDLSAWICDSSTIAEHSSQ- 102
MGVK LW +L P E K + +L + + ID+S W+ +
Sbjct: 1 MGVKGLWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMKVFDGTPLRV 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+ + L+ LFFR + LL + + P+FV +G K P K
Sbjct: 61 EQLGLQMLFFRCARLLAMPILPLFVFDGLKRPAHK 95
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP +V +GK P K +EKR +A+ +
Sbjct: 43 DGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAEAREEAQ 102
Query: 152 GRNVQAGSRA 161
+ +A +R
Sbjct: 103 EKWEEALARG 112
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT L+ G+KP +V +GK P K +EKR +A+ + + +A +R L+
Sbjct: 56 SHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAEAREEAQEKWEEALARGDLE 115
>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
gi|166973696|sp|A0RU95.1|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
Length = 340
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 65 LTPICERKP--IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFR 113
L + R+P + K +AID I D + + + +L L +R
Sbjct: 5 LKALVSREPTRLESFATKVVAIDAYNAIYQFLATIRGPDGMQLTDARGRVTSHLSGLLYR 64
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 159
+ L +G+KP++V +G+ P LK IE+R RNV+ G+
Sbjct: 65 NASFLSMGIKPVYVFDGRPPTLKSAEIERR---------RNVKKGA 101
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
L +R + L +G+KP++V +G+ P LK IE+R RNV+ G+
Sbjct: 61 LLYRNASFLSMGIKPVYVFDGRPPTLKSAEIERR---------RNVKKGA 101
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S + D S + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQ 145
P +K +EKR +
Sbjct: 89 PPDMKSGELEKRSE 102
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKG 219
+F+RT ++ G+KP++V +GK P +K +EKR + + + +A + A+ KG
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAE----KALTEAKEKG 118
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
D + + + + +L LF+R L+ G+KP +V +GK P K IEKR++A+
Sbjct: 43 DGTPLMDSRGRITSHLSGLFYRNINLMEAGIKPAYVFDGKPPEFKKKEIEKRREAR 98
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
LF+R L+ G+KP +V +GK P K IEKR++A+ + + +A R L+
Sbjct: 61 LFYRNINLMEAGIKPAYVFDGKPPEFKKKEIEKRREAREEAKEKWYEALERGNLE 115
>gi|389603118|ref|XP_001568459.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505733|emb|CAM43572.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1029
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV+ LW +L EL+ K +AID S WI + +A ++ L R
Sbjct: 112 MGVRGLWRLLDSFGVVLQPDELKGKRVAIDASIWIAQFRARVAPGEDIEHRVLEGFLARI 171
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
LL ++P+FV +G A K R + R+A V+ RAR +
Sbjct: 172 LKLLFYDIRPVFVFDGTASSSKSAENHHRMMQRARNAQALVK--RRARQIL 220
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 13 DGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAE 72
Query: 152 GRNVQA 157
R +A
Sbjct: 73 ARYRRA 78
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R +A
Sbjct: 20 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRA 78
>gi|71017559|ref|XP_759010.1| hypothetical protein UM02863.1 [Ustilago maydis 521]
gi|46098732|gb|EAK83965.1| hypothetical protein UM02863.1 [Ustilago maydis 521]
Length = 864
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 56 MGVKDLWGILTPICERKPIW------------ELQDKTIAIDLSAWICDSSTIAEHSSQK 103
MG+ LW L P E + EL+ + ID S W+ + + S
Sbjct: 1 MGIPGLWAELAPAAETTTLHSYLLTSFVQNRNELRGLRLGIDASLWLFHA---LQSSGGA 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDT-IEKRQQ 145
N +LR LF+R + LL L V P+FV +G K P K + RQQ
Sbjct: 58 NPHLRLLFYRLAKLLSLPVLPVFVFDGPKRPTWKRGKLVSGRQQ 101
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K +E+R + + +
Sbjct: 46 DGTPLLDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAE 105
Query: 152 G---RNVQAGS 159
R V+AG
Sbjct: 106 ARYRRAVEAGE 116
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNV 209
R + S LF+RT L+ G+KP++V +GK P +K +E+R + + + R V
Sbjct: 53 REGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAV 112
Query: 210 QAGS 213
+AG
Sbjct: 113 EAGE 116
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGV DL ++ + EL+ K ++ID L ++ D + + + + +
Sbjct: 1 MGV-DLADLVKDVKRELSFSELKGKKVSIDGYNALYQFLAAIRQPDGTPLMDSHGRITSH 59
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFF 166
L LF+RT +L GV PI+V +GK P K + +E+R++ + + + +A S +
Sbjct: 60 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 119
Query: 167 RTSYLLLLGVKPIFVLEGK 185
R +L + + V E K
Sbjct: 120 RKYSQAILRLSNMMVEESK 138
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT +L GV PI+V +GK P K + +E+R++ + + + +A S +++
Sbjct: 58 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 117
Query: 219 GLQ 221
L+
Sbjct: 118 ELR 120
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWICD-------------SSTIAE 98
MG+K L +L+ P C R+ + L + IAID S I ++ +
Sbjct: 1 MGIKGLAKLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTN 60
Query: 99 HSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLK-HDTI---EKRQQAQG 148
+ +++ +F RT + G++P+FV +GK P +K H+ I EKR++AQ
Sbjct: 61 AEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQA 114
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 149 RSAGRNVQAG----------SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLK-HDTI--- 194
RS G N QA S + +F RT + G++P+FV +GK P +K H+ I
Sbjct: 47 RSGGPNQQATMLTNAEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRR 106
Query: 195 EKRQQAQG 202
EKR++AQ
Sbjct: 107 EKREKAQA 114
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L +F+RT LL G+KP++V +GK P LK + KR + + A + ++A + A
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERR-EEAEKALKAATEA 117
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
N S +F+RT LL G+KP++V +GK P LK + KR + + A + ++A +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERR-EEAEKALKAAT 115
Query: 214 RA 215
A
Sbjct: 116 EA 117
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L + +R S ++ +G++PIFV +G+ PV K IE+R++ + +
Sbjct: 43 DGTPLKDSQGRMTSHLSGILYRVSNMIEVGMRPIFVFDGEPPVFKQKEIEERKERRAEAE 102
Query: 152 GRNVQAGSRA 161
+ + A R
Sbjct: 103 EKWIAAIERG 112
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
S + +R S ++ +G++PIFV +G+ PV K IE+R++ + + + + A R
Sbjct: 56 SHLSGILYRVSNMIEVGMRPIFVFDGEPPVFKQKEIEERKERRAEAEEKWIAAIERG 112
>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
Length = 937
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
++K ++ F R LL L VKPI V +G AP LK DTI KR + ++ R
Sbjct: 4 NKKGPHMLGFFRRLCKLLFLKVKPIIVFDGPAPKLKRDTIAKRARDAEKAEAR 56
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
F R LL L VKPI V +G AP LK DTI KR + ++ R
Sbjct: 13 FFRRLCKLLFLKVKPIIVFDGPAPKLKRDTIAKRARDAEKAEAR 56
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I D +T+ + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR + + +
Sbjct: 89 PPQMKSGELAKRSERRAEA 107
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ S +F+RT ++ G+KP++V +GK P +K + KR + + +
Sbjct: 59 ETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEA 107
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICERK-PIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ ++ P+ R+ I + + +AID S I D + + +
Sbjct: 1 MGIKHLFQLIKEEAPLSIREGEIKQHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDAGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK P LK + KR Q
Sbjct: 61 TSHLMGMFYRTLRMVDAGIKPLYVFDGKPPKLKSGELAKRFQ 102
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P LK + KR Q
Sbjct: 67 MFYRTLRMVDAGIKPLYVFDGKPPKLKSGELAKRFQ 102
>gi|222445720|ref|ZP_03608235.1| hypothetical protein METSMIALI_01362 [Methanobrevibacter smithii
DSM 2375]
gi|222435285|gb|EEE42450.1| XPG N-terminal domain protein [Methanobrevibacter smithii DSM 2375]
Length = 110
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGVK L I+ P E+ +L+ + I+ID L ++ D S +++ + +
Sbjct: 1 MGVK-LKDIIRP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGSPLSDSNGNITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
L + +R S ++ +KPI+V +G LK +TI++R+Q + S
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREES 101
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
+L +T+AID L ++ D + + + +L + +R + L G+KP+F
Sbjct: 18 DLAHRTVAIDGYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTNLFEAGIKPVF 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQ 147
V +GK P K DTI +R++++
Sbjct: 78 VFDGKPPDFKADTISQRKKSR 98
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S + +R + L G+KP+FV +GK P K DTI +R++++
Sbjct: 56 SHLSGILYRMTNLFEAGIKPVFVFDGKPPDFKADTISQRKKSR 98
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K+L+ IL E P I E + K +AID S I D + S
Sbjct: 1 MGIKNLFQILK---EEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|219125354|ref|XP_002182948.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405742|gb|EEC45684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 552
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV+ LW +L PI R I L+ + +A+D S W+ D+ + Q +
Sbjct: 1 MGVQGLWRLLLPIGRRISIETLEGRVLAVDASIWLTQFLKAMRDPDTGKV-----QPAAH 55
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L R L G++ + V +G P +K I +R++
Sbjct: 56 LIGFIRRLCRLRFHGIRAVLVFDGPTPAIKRREIMRRRK 94
>gi|76155152|gb|AAX26398.2| SJCHGC04804 protein [Schistosoma japonicum]
Length = 130
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 69 CERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
CE K + + +AID S I + +T+ + +L +F+RT ++
Sbjct: 21 CEIKSYF---GRKVAIDASMSIYQFLIAVRQEGNTLMNAEGESTSHLMGMFYRTIRMIES 77
Query: 121 GVKPIFVLEGKAPVLKHDTIEKR 143
G+KP++V EGK P +K + KR
Sbjct: 78 GIKPVYVFEGKPPSMKAGELAKR 100
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
++ S +F+RT ++ G+KP++V EGK P +K + KR
Sbjct: 59 ESTSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKR 100
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L I I E P I E + KT +AID S I D +
Sbjct: 1 MGIKGLTAI---IAEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP++V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRMVDNGIKPLYVFDGKPPELKSGVLSKR 101
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LFFRT ++ G++PI+V +GKAP LK ++ R+Q
Sbjct: 67 HLNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQ 106
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LFFRT ++ G++PI+V +GKAP LK ++ R+Q
Sbjct: 66 SHLNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQ 106
>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
Length = 396
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------------CDSS 94
MG+K L G+ I E P I + +AID S + SS
Sbjct: 1 MGIKGLMGV---INEHAPGAVKELVIEGYTGRVVAIDASMSLYQFLIAIRHQGEGGAPSS 57
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ ++ +++ +F RT LL GV+P++V +GK P +K + KR
Sbjct: 58 VLTNAEGEQTSHIQGMFNRTIRLLQAGVRPVYVFDGKPPNMKGGELAKR 106
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ ++ C + I + +AID S I D + + +
Sbjct: 1 MGIKHLYQVIDENCPGAVKTGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSDTGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP+FV +G P LK + KR Q + + + +A
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLFVFDGAPPKLKSGELAKRFQRKSEAQEAHEEA 114
>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Ogataea parapolymorpha
DL-1]
Length = 374
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L ++ R + L + IAID S + D + + +
Sbjct: 1 MGIKGLNALVAENAPRAIRSSEMKSLFGRKIAIDASMCLYQFLIAVRQQDGNQLTNEAGG 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP +V +GK PVLK +EKR
Sbjct: 61 TTSHLMGFFYRTIRMVGNGIKPCYVFDGKPPVLKGGELEKR 101
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + S F+RT ++ G+KP +V +GK PVLK +EKR
Sbjct: 47 RQQDGNQLTNEAGGTTSHLMGFFYRTIRMVGNGIKPCYVFDGKPPVLKGGELEKR 101
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L +F+RT LL G+KP++V +GK P LK + KR + + A + ++A + A
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERR-EEAEKALKAATEA 117
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNV 209
N S +F+RT LL G+KP++V +GK P LK + E+R++A+ ++
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAE-KALKAAT 115
Query: 210 QAGSRARLK 218
+AG A ++
Sbjct: 116 EAGDEAEIE 124
>gi|254656361|gb|ACT76275.1| excision repair cross-complementing rodent repair deficiency
complementation group 5, partial [Sebastiscus
marmoratus]
Length = 228
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 85 DLSAWICDSSTIA---EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
D+S W+ + E +S +N +L LF R LL ++P+FV G AP+LK T+
Sbjct: 37 DISIWLNQAVKGVRDREGNSMQNAHLLTLFNRICKLLFFHIRPVFVFGGDAPLLKKQTLA 96
Query: 142 KRQQAQGRSAGRNVQAGSRARNLFFR 167
R+Q + + + Q + F +
Sbjct: 97 VRRQRKEELSQESKQTNEKLLKTFLK 122
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D S + + +L +F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 49 DGSQMQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTE 102
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+ S +F+RT ++ G+KP++V +GK P +K +EKR + + + +A + A
Sbjct: 59 ETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAE----KALTEA 114
Query: 216 RLKG 219
+ KG
Sbjct: 115 KEKG 118
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|393795424|ref|ZP_10378788.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 339
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 80 KTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
K IAID I D +++ + +L L +R L LG+KP++V +G
Sbjct: 22 KVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFDG 81
Query: 131 KAPVLKHDTIEKRQQ 145
K P LK IE+R+Q
Sbjct: 82 KPPSLKTAEIERRKQ 96
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 56 SHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P E+++ + +AID S I D + S
Sbjct: 1 MGIKHLYQI---ISENAPDAVKSGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+ +L LF+RT ++ G+KP++V +G P LK + KR + +A ++ +A
Sbjct: 58 GETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEA 114
>gi|449015893|dbj|BAM79295.1| exonuclease I [Cyanidioschyzon merolae strain 10D]
Length = 557
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS------------STIAEHSSQK 103
MG++ L I+ P+C R+ I + K + +D +W+ S T A +
Sbjct: 1 MGIQGLLPIIKPVCFRRHISDFAQKRVGVDGYSWLHKSLAGCCIALDRSNGTTAPRVERT 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
++ N R L GV P+ V +G K +T ++R + ++ QA +R
Sbjct: 61 ERFVENFLGRVRMLQHYGVSPLIVFDGGRIPAKSETEKRRATLRAKNLELATQALAR 117
>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 339
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 80 KTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
K IAID I D +++ + +L L +R L LG+KP++V +G
Sbjct: 22 KVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFDG 81
Query: 131 KAPVLKHDTIEKRQQ 145
K P LK IE+R+Q
Sbjct: 82 KPPSLKTAEIERRKQ 96
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 56 SHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|300120156|emb|CBK19710.2| unnamed protein product [Blastocystis hominis]
Length = 370
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 56 MGVKDLWGILTPICERKPIWELQDK-----TIAIDLSAWICDSSTIAEHSSQ-------- 102
MG+K L ++T K + E++ K IAID S I S ++Q
Sbjct: 1 MGIKGLSKLITAYAP-KAMKEVESKRYIGRMIAIDASVMIYQSLVAIRMNNQFASVMLTN 59
Query: 103 ----KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+++ + +T L+ G+KP+FV EGK P +K + +E+R+Q
Sbjct: 60 AEGEVTSHIQGILSKTIKLMEDGIKPVFVFEGKPPEMKQNELERRKQ 106
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+ S + + +T L+ G+KP+FV EGK P +K + +E+R+Q
Sbjct: 63 EVTSHIQGILSKTIKLMEDGIKPVFVFEGKPPEMKQNELERRKQ 106
>gi|407867753|gb|EKG08658.1| hypothetical protein TCSYLVIO_000184 [Trypanosoma cruzi]
Length = 761
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI-------------CDSSTI---AEH 99
MG+K LW + P+C + + + + +A+D+ W+ D+ AE
Sbjct: 1 MGIKGLWSEVRPVCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIECAEM 60
Query: 100 SSQ----------KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+S+ N +L+ + R +L GV P+ V +G +K T +RQ
Sbjct: 61 TSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQ 115
>gi|395833265|ref|XP_003789660.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Otolemur garnettii]
Length = 1650
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+N +L LF R LL ++P+FV +G AP+LK T+ KR+
Sbjct: 504 ENAHLLTLFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRR 545
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
LF R LL ++P+FV +G AP+LK T+ KR+
Sbjct: 511 LFHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRR 545
>gi|71413355|ref|XP_808820.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873103|gb|EAN86969.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 762
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI-------------CDSSTI---AEH 99
MG+K LW + P+C + + + + +A+D+ W+ D+ AE
Sbjct: 1 MGIKGLWSEVRPVCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIECAEM 60
Query: 100 SSQ----------KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+S+ N +L+ + R +L GV P+ V +G +K T +RQ
Sbjct: 61 TSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQ 115
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKPIWELQD-------KTIAIDLSAWI---------CDSSTIAEH 99
MG++ L + IC+ P Q+ + +AID S I D +
Sbjct: 1 MGIQGLSRV---ICDNAPAATKQNDIKNYFGRKVAIDASMSIYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L + +RT ++ G+KP +V +GK P LK ++KR
Sbjct: 58 AGETTSHLMGMLYRTIRMVENGIKPAYVFDGKPPTLKSGELQKR 101
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 67 HLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQ 106
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 66 SHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQ 106
>gi|195153018|ref|XP_002017429.1| GL21530 [Drosophila persimilis]
gi|194112486|gb|EDW34529.1| GL21530 [Drosophila persimilis]
Length = 578
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
Y+ LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 4 YVLGLFHRLCKLLYYRVRPVFIFDGCTPQLKRDTIARRQQQRNK 47
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
LF R LL V+P+F+ +G P LK DTI +RQQ + +
Sbjct: 8 LFHRLCKLLYYRVRPVFIFDGCTPQLKRDTIARRQQQRNK 47
>gi|449539943|gb|EMD30944.1| hypothetical protein CERSUDRAFT_19084, partial [Ceriporiopsis
subvermispora B]
Length = 547
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 56 MGVKDLWGILTPICERKPIWEL-------------QDKTIAIDLSAWICDSSTIAEHSSQ 102
MGV LWG+L P E + + L + + ID S W + A +
Sbjct: 1 MGVSGLWGVLEPAAEVRSLTHLAVVDGFEANPDGARGFRVGIDASIWFVHA---AYGRAG 57
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLK 136
+N LR LFFR L+ + P+FV +G P K
Sbjct: 58 ENPELRTLFFRCLRLMSMPFLPVFVFDGPGRPTFK 92
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P C ++ +E + IA+D S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPKCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+KP++V +GK P +K IE+R + +A
Sbjct: 46 DGTPLKDSQGRVTSHLSGLFYRTINLVEEGLKPVYVFDGKPPEMKRKEIEERVARKKEAA 105
Query: 152 GRNVQA 157
+ +A
Sbjct: 106 EKYAKA 111
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S LF+RT L+ G+KP++V +GK P +K IE+R + +A + +A
Sbjct: 59 SHLSGLFYRTINLVEEGLKPVYVFDGKPPEMKRKEIEERVARKKEAAEKYAKA 111
>gi|71423277|ref|XP_812404.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70877180|gb|EAN90553.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 760
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI-------------CDSSTI---AEH 99
MG+K LW + P+C + + + + +A+D+ W+ D+ AE
Sbjct: 1 MGIKGLWSEVRPVCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIESAEM 60
Query: 100 SSQ----------KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+S+ N +L+ + R +L GV P+ V +G +K T +RQ
Sbjct: 61 TSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQ 115
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+K L +L +R +P+ K +AID S A +T+ S
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPT 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L F+RT ++ LG+ P++V +G P +K +EKR++
Sbjct: 61 S-HLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKE 101
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ G + G S F+RT ++ LG+ P++V +G P +K +EKR++
Sbjct: 47 RSGGATLGNEDSPTSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKE 101
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 74 IWELQDKTIAIDL---------SAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I +L++KT+AID S + D + + + +F++T YLL + P
Sbjct: 16 ITDLKNKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGIFYKTIYLLNNEITP 75
Query: 125 IFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
I+V +GK P LK T E+R++ + + A ++ + R N+
Sbjct: 76 IWVFDGKPPELKLKTREERRKVKEK-ASKDYEIAKREENI 114
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D + + + + +L + FR S + G+KP+FV +GK LK TIE+R++
Sbjct: 44 DGTPLMDRQGRVTSHLSGILFRISNFMAKGIKPVFVFDGKPTQLKQATIEERRK 97
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + S + FR S + G+KP+FV +GK LK TIE+R++
Sbjct: 51 RQGRVTSHLSGILFRISNFMAKGIKPVFVFDGKPTQLKQATIEERRK 97
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+K L +L +R +P+ K +AID S A +T+ S
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPT 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L F+RT ++ LG+ P++V +G P +K +EKR++
Sbjct: 61 S-HLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKE 101
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ G + G S F+RT ++ LG+ P++V +G P +K +EKR++
Sbjct: 47 RSGGATLGNEDSPTSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKE 101
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K+L+ IL E P I E + K +AID S I D + S
Sbjct: 1 MGIKNLFQILK---EEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPSAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 67 HLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQ 106
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 66 SHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQ 106
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICERKPIWELQ-DKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ ++ TP +K + Q + +AID S I D + + +
Sbjct: 1 MGIKHLYQLIDEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNETGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +A+D S I D +T+ + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR + + +
Sbjct: 89 PPQMKSGELAKRSERRAEA 107
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ S +F+RT ++ G+KP++V +GK P +K + KR + + +
Sbjct: 59 ETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEA 107
>gi|47224621|emb|CAG03605.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 160 RARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
R R S L L+GVK +FV+EG+AP LK +T+ KR +A+
Sbjct: 3 RVSKPHLRVSSLTLMGVKLVFVMEGEAPKLKAETMSKRTEAR 44
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
R S L L+GVK +FV+EG+AP LK +T+ KR +A+
Sbjct: 9 LRVSSLTLMGVKLVFVMEGEAPKLKAETMSKRTEAR 44
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID--------LSAWICDSSTIAEHSSQKNMYL 107
MGV +L I+ P+ + +L K IAID L + D + + + +L
Sbjct: 1 MGV-NLKEIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSHL 59
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
LF+RT LL G+KPI+V +G P K EKR++
Sbjct: 60 SGLFYRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKK 97
>gi|167516124|ref|XP_001742403.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779027|gb|EDQ92641.1| predicted protein [Monosiga brevicollis MX1]
Length = 99
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 56 MGVKDLWGILTPICERKPIW--ELQDKTIAIDLSAW---ICDSSTIAEHSSQKNMYLRNL 110
MGV LW +L +P+ EL+ + +A+D+S W I + + + +N ++ L
Sbjct: 1 MGVHSLWQLLE--KAERPVQPDELEGQILAVDVSIWLHQIVRAMRDRQGNLVQNAHVHAL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI 140
R LL +KP+F+ +G AP +K +
Sbjct: 59 LSRLCKLLYHQIKPVFIFDGAAPAIKQQAV 88
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +AID S + D + + +L +F+RT ++ +KP++V +G
Sbjct: 29 RKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSGMFYRTIKMVENNIKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K PVLK +EKR
Sbjct: 89 KPPVLKGGELEKR 101
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPSAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 54 AIMGVKDLWGILTPICERK-PIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I G+ L L P ++ I + +AID S + + + + +
Sbjct: 2 GIKGLSQLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAG 158
+L F+RT LL G+KP++V +GK P LK + EKR++AQ ++ + +AG
Sbjct: 62 SHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEAQ-KALDKATEAG 118
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAG 212
F+RT LL G+KP++V +GK P LK + EKR++AQ ++ + +AG
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEAQ-KALDKATEAG 118
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPSAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 76 ELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
EL+ K ++ID I D + + + + +L +F+RT LL GV PI+
Sbjct: 13 ELKGKKVSIDAYNAIYQFLTAIRQPDGTPLMDSQGRVTSHLSGIFYRTISLLEEGVIPIY 72
Query: 127 VLEGKAPVLKHDTIEKRQ 144
V +GK P LK +E+R+
Sbjct: 73 VFDGKPPELKAQELERRR 90
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S +F+RT LL GV PI+V +GK P LK +E+R+
Sbjct: 51 SHLSGIFYRTISLLEEGVIPIYVFDGKPPELKAQELERRR 90
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 56 MGVKDLWGILTP-----ICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQ 102
MG+K L +L I ER P+ K +AID S I D ST+ +
Sbjct: 1 MGIKQLSKLLKENSVKGIKER-PLAYYSSKRVAIDASMSIYQFLIAVRSDGSTLGNGDTT 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+ +L LF+RT ++ LG+ P++V +G P +K + KR + + +A + + S A
Sbjct: 60 TS-HLVGLFYRTIRMVELGITPVYVFDGVPPEVKMKELGKRNERRA-TADKEYKDASEA 116
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKPI----WELQD---KTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P +EL++ + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPHAYKEFELKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 EGETTSHLSGIFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 96 IAEHSSQ--KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPHAYKEFELKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTND 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 EGETTSHLSGIFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|386876195|ref|ZP_10118324.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
gi|386805976|gb|EIJ65466.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
Length = 340
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 68 ICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLL 118
+ E+ + K +AID I D +++ + +L L +R L
Sbjct: 10 VREKTTLEAFSTKVVAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFL 69
Query: 119 LLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+G+KP++V +GK P LK IE+R+Q
Sbjct: 70 SIGIKPVYVFDGKPPSLKTAEIERRKQ 96
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S L +R L +G+KP++V +GK P LK IE+R+Q
Sbjct: 56 SHLSGLLYRNVNFLSIGIKPVYVFDGKPPSLKTAEIERRKQ 96
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICERKPIWELQ-DKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ ++ TP +K + Q + +AID S I D + + +
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICERKPIWELQ-DKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ ++ TP +K + Q + +AID S I D + + +
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L I+ P R + + + + +AID S + D +A +
Sbjct: 1 MGIKGLNSIIQQQVPSAIRPREMKQFFGRRVAIDASMSLYQFLIAVRQADGVQLASADGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP +V +GK PVLK ++KR +
Sbjct: 61 TTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTE 103
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 144 QQAQG-RSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+QA G + A + + S +F+RT ++ G+KP +V +GK PVLK ++KR +
Sbjct: 47 RQADGVQLASADGETTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTE 103
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 56 MGVKDLWGILTPICE--RKPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQKNM 105
MG+ +L ++ P+ + K +A D S A D + +A H+S
Sbjct: 1 MGIHNLTKVIKKYYRPAEHPLSFYRTKKMAFDASLLTYQYLVAIRSDGAQLA-HNSSSTS 59
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
++ F++ L +G+KP+FV +GK P +K + I +R + + +A + +A
Sbjct: 60 HISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKDAAEKYSEA 111
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
++ G N + S F++ L +G+KP+FV +GK P +K + I +R + + +
Sbjct: 45 RSDGAQLAHNSSSTSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKDA 104
Query: 205 AGRNVQA 211
A + +A
Sbjct: 105 AEKYSEA 111
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
+L LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +
Sbjct: 10 HLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEE 69
Query: 166 FRTSYLLLLGVKPIFVLEGK 185
R +L + I V E K
Sbjct: 70 LRKYSQAILRLSNIMVEESK 89
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKGLQ 221
LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +++ L+
Sbjct: 14 LFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELR 71
>gi|209733812|gb|ACI67775.1| Flap endonuclease 1-B [Salmo salar]
Length = 116
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEK 142
P LK +EK
Sbjct: 89 PPQLKSGELEK 99
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEK 196
N + S +F+RT +L G+KP++V +GK P LK +EK
Sbjct: 56 ENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEK 99
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ ST+ + +L +F+RT ++ G+KP++V EGK P +K + KR +
Sbjct: 13 EGSTLMNSEGESTSHLMGMFYRTIRMIENGIKPVYVFEGKPPSMKAGELAKRTE 66
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ S +F+RT ++ G+KP++V EGK P +K + KR +
Sbjct: 23 ESTSHLMGMFYRTIRMIENGIKPVYVFEGKPPSMKAGELAKRTE 66
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 67 HLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQ 106
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 66 SHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQ 106
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 73 PIWELQDKTIAID---------LSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVK 123
PI L KT+AID S + D S + + +F++T Y+L V
Sbjct: 15 PIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNKKGEITSTYNGIFYKTIYMLENDVT 74
Query: 124 PIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
P++V +GK P LK T E+R++ + ++ ++A
Sbjct: 75 PVWVFDGKPPKLKEKTREERRKMREKAKEEFIKA 108
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S +F++T Y+L V P++V +GK P LK T E+R++ + ++ ++A ++
Sbjct: 56 STYNGIFYKTIYMLENDVTPVWVFDGKPPKLKEKTREERRKMREKAKEEFIKAKEIENIE 115
Query: 219 GLQ 221
+Q
Sbjct: 116 EMQ 118
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 96 IAEHSSQ--KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPHAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGV DL +L E+ + EL K IA+D L ++ D + + + S + +
Sbjct: 1 MGV-DLGDLLE--REKIELEELAGKLIAVDAFNTLYQFLSIIRQQDGTPLRDGSGRTTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
L + +R + LL G K +FV +G+ P K +T+++R + + R+
Sbjct: 58 LSGILYRMTNLLEAGAKVVFVFDGEPPRFKRETLDQRAETRSRA 101
>gi|403162368|ref|XP_003322600.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172578|gb|EFP78181.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 387
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L ++ + + I L + +AID S I D + + +
Sbjct: 1 MGIKGLTALINDVAPQAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L LF+RT ++ G+KP +V +GK P +K + KR
Sbjct: 61 TTSHLMGLFYRTIRMVDNGIKPAYVFDGKPPAMKAGVLSKR 101
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 140 IEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
I RQQ + + S LF+RT ++ G+KP +V +GK P +K + KR
Sbjct: 44 IAVRQQDGQQLMNEAGETTSHLMGLFYRTIRMVDNGIKPAYVFDGKPPAMKAGVLSKR 101
>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-56-E4]
gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote KM3-86-C1]
Length = 341
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV D+ +L + E+ + K IAID I D + + + +
Sbjct: 1 MGV-DIKALL--VREKTNLESFSSKIIAIDAYNAIYQFLAIIRGPDGLHLTDSKGRVTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
L L +R L +G+KP++V +GK P LK IE+R+
Sbjct: 58 LTGLLYRNVNFLSMGIKPVYVFDGKPPSLKTAEIERRK 95
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S L +R L +G+KP++V +GK P LK IE+R+
Sbjct: 56 SHLTGLLYRNVNFLSMGIKPVYVFDGKPPSLKTAEIERRK 95
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 67 HLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQ 106
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF RT ++ G+KPI+V +GK P LK D +E R+Q
Sbjct: 66 SHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQ 106
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L ++ I + I + + +AID S + + + + +
Sbjct: 1 MGIKGLSQLIADIAPFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGS 159
+L F+RT LL G+KP++V +GK P LK + E+R++AQ ++ + +AG+
Sbjct: 61 TSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEAQ-KALDKATEAGA 119
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGS 213
F+RT LL G+KP++V +GK P LK + E+R++AQ ++ + +AG+
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEAQ-KALDKATEAGA 119
>gi|261330365|emb|CBH13349.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 796
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 29/132 (21%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MG+K LWG + P+C + E + + +D+ W+ RA+ G D
Sbjct: 1 MGIKGLWGEVKPVCRDAHLEEFRGSRVGVDMYVWL----------------HRAVSGSVD 44
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM-YLRNLFFRTSYLLL 119
L R + L D ++ T++ H N +L + + LL
Sbjct: 45 LSTEANVEMLRAHVESLSDPSV------------TVSAHPIPLNTKFLHWVMSQVELLLR 92
Query: 120 LGVKPIFVLEGK 131
GVKP+ V +G+
Sbjct: 93 YGVKPVLVFDGR 104
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 54 AIMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 2 GILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 62 SHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 54 AIMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 2 GILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 62 SHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT +L G+KP +V +GK P +K IEKR++ + ++
Sbjct: 47 DGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAKEIEKRRKIREDAS 106
Query: 152 GRNVQA 157
+ +A
Sbjct: 107 KKYEEA 112
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S LF+RT +L G+KP +V +GK P +K IEKR++ + ++ + +A
Sbjct: 60 SHLSGLFYRTINILENGIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYEEA 112
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 EGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 96 IAEHSSQ--KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPHAYKEFQLKNLFGRK------------VAIDASMCLYQFLIAVRQSDGQQLTNE 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 EGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D + + + +L +F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 49 DGAQLQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSE 102
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKG 219
+F+RT ++ G+KP++V +GK P +K +EKR + + + +A + A+ KG
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAE----KALTEAKEKG 118
>gi|403216014|emb|CCK70512.1| hypothetical protein KNAG_0E02520 [Kazachstania naganishii CBS
8797]
Length = 380
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 56 MGVKDLWGIL---TPICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L GI+ P+ R+ + + +AID S + D + +
Sbjct: 1 MGIKGLNGIIMESAPLAVRRSEMKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTDAEGG 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP +V +G P LK + KR Q + + R +A
Sbjct: 61 TTSHLMGMFYRTLRMVDNGIKPCYVFDGAPPALKQHELGKRTQRRAETEQRLKEA 115
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ S +F+RT ++ G+KP +V +G P LK + KR Q +
Sbjct: 47 RQQDGGQLTDAEGGTTSHLMGMFYRTLRMVDNGIKPCYVFDGAPPALKQHELGKRTQRRA 106
Query: 203 RSAGRNVQA 211
+ R +A
Sbjct: 107 ETEQRLKEA 115
>gi|265141450|gb|ACY74444.1| flap endonuclease [Carukia barnesi]
Length = 236
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D S + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKIAIDASMSIYQFLIAVRSDGSQLTNEEGETTSHLMGIFYRTIRMVENGIKPLYVFDGK 88
Query: 132 APVLKHDTI----EKRQQAQ 147
P +K + E+R++AQ
Sbjct: 89 PPEMKSGELTKRTERREEAQ 108
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 54 AIMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 2 GILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 62 SHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 54 AIMGVKDLWGILTPICERK-PIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKN 104
I+G+ L + P R+ I + +AID S + +S + +
Sbjct: 2 GILGLSKLLADVAPHAIREGEIKHYFGRKVAIDASMCLYQFLIAVRNESGQLTSVDGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L F+RT L+ G+KP++V +GK P LK + KRQ+
Sbjct: 62 SHLLGTFYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQE 102
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
F+RT L+ G+KP++V +GK P LK + KRQ+
Sbjct: 68 FYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQE 102
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|449549056|gb|EMD40022.1| hypothetical protein CERSUDRAFT_132799 [Ceriporiopsis subvermispora
B]
Length = 409
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K G+ + I E P I E + KT +AID S I D +
Sbjct: 1 MGIK---GLTSLIVENSPNAISEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKAGVLSKR 101
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT +L G+KP +V +GK P +K IEKR++ + ++
Sbjct: 47 DGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAREIEKRRKIREDAS 106
Query: 152 GRNVQAGSRA 161
+ +A R
Sbjct: 107 KKYEEALRRG 116
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT +L G+KP +V +GK P +K IEKR++ + ++ + +A R ++
Sbjct: 60 SHLSGLFYRTINILENGIKPAYVFDGKPPEIKAREIEKRRKIREDASKKYEEALRRGDVE 119
Query: 219 G 219
Sbjct: 120 A 120
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 70 ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
E + I EL IAID S I + T+ + + +L+ +F RT LL
Sbjct: 3 EGEQIRELLRPQIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLES 62
Query: 121 GVKPIFVLEGKAPVLKHDTIEKR 143
G+KP++V +GK P +K + KR
Sbjct: 63 GMKPVYVFDGKPPDMKKQELAKR 85
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|170095687|ref|XP_001879064.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
gi|164646368|gb|EDR10614.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
Length = 762
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-------------IAIDLSAWICDSSTIAEHSSQ 102
MGV + IL P + + E K + +D+S WIC + A HS
Sbjct: 230 MGVPGISKILEPARRVQTLTEFATKEGFQLNPHGDNMVRVGVDVSVWICQAQA-AAHSMP 288
Query: 103 K-----NMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ N LR +FFR +LL ++PIFV +G
Sbjct: 289 RTQQGENPALRIIFFRICHLLAQSIQPIFVADG 321
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D +A + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLANEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKR 101
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ A + S +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 47 RQQDGGQLANEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKR 101
>gi|348688657|gb|EGZ28471.1| hypothetical protein PHYSODRAFT_294028 [Phytophthora sojae]
Length = 390
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 56 MGVKDLWGIL---TPIC--ERKPIWELQDKTIAIDLSAWICD-------------SSTIA 97
MG+K L +L P C E + + L +AID S + S +
Sbjct: 1 MGIKGLMKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALT 60
Query: 98 EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
+ +L+ +F RT ++ G+KP++V +GK PV+K + ++RQ+AQ
Sbjct: 61 NADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQ 114
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
S + +F RT ++ G+KP++V +GK PV+K + ++RQ+AQ
Sbjct: 68 SHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQ 114
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 56 MGVKDLWGILT---PIC-ERKPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+ +L L P C + I + +AID S A + + + +
Sbjct: 1 MGILNLTKFLADVAPHCIKETDIKSYFGRKVAIDASMSLYQFLIAVRSEGAQLTTADGEP 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLK----HDTIEKRQQAQGRSAGRNVQAGS 159
+L F+RT LL G+KP++V +GK P +K + +EKR +AQ ++ + ++AG
Sbjct: 61 TSHLVGTFYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQ-KALDKAMEAGD 119
Query: 160 RA 161
+A
Sbjct: 120 QA 121
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLK----HDTIEKRQQAQGRSAGRNVQAGSRARL 217
F+RT LL G+KP++V +GK P +K + +EKR +AQ ++ + ++AG +A +
Sbjct: 68 FYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQ-KALDKAMEAGDQAEV 123
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L+ L RT+ +L G+KP +V +GK P LK +EKR++ Q
Sbjct: 63 HLQGLLARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQ 104
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
+ L RT+ +L G+KP +V +GK P LK +EKR++ Q
Sbjct: 65 QGLLARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQ 104
>gi|296242726|ref|YP_003650213.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
gi|296095310|gb|ADG91261.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
Length = 353
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 77 LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L+ K IAID L ++ D + + + + +L LF+RT L+ G+K ++V
Sbjct: 23 LKGKVIAIDAYNALYQFLAAIRQPDGTPLMDSQGRITSHLSGLFYRTINLVEEGLKTVYV 82
Query: 128 LEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLL 173
+GK P LK +E+R+ + SA R +A A +L Y ++
Sbjct: 83 FDGKPPELKARELERRRALKEESA-RKYEAAVEAGDLEAARRYAMM 127
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
S LF+RT L+ G+K ++V +GK P LK +E+R+ + SA R +A A
Sbjct: 60 SHLSGLFYRTINLVEEGLKTVYVFDGKPPELKARELERRRALKEESA-RKYEAAVEA 115
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L + I + P I E++ KT +AID S + D +
Sbjct: 1 MGIKGLTAL---ISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L F+RT ++ G+KP++V +G P LK + ++KR
Sbjct: 58 SGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
>gi|401429746|ref|XP_003879355.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495605|emb|CBZ30910.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 930
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV LW +L EL+ K +AID S WI + +A ++ L R
Sbjct: 1 MGVHGLWQLLDSFGVVVQPDELKGKRVAIDASIWIAQFRARVAPGEDTEHKVLEGFLARI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
L ++P+FV +G A K +R + R+A V+ RAR +
Sbjct: 61 LKLFFYDIRPVFVFDGPASSSKGAEHYRRTMQRARNAQALVK--RRARQIL 109
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P+ R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLAAVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L +F+RT LL G+KP++V +G P +K + KR + + A + ++A + A
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGAPPDMKSGELAKRAERRD-EAEKALKAATEA 117
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I D + S
Sbjct: 1 MGIKHLFQI---IKEEAPDAIKEGEIKAHFGRKVAIDASMSIYSFLIAVRSDGQQLTNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|301758086|ref|XP_002914899.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Ailuropoda melanoleuca]
Length = 1644
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+S +N +L LF R LL ++PIFV +G AP+LK T+ +R+
Sbjct: 501 NSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVRRRH 546
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ +R+
Sbjct: 511 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVRRRH 546
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI---------CDSSTIAEH 99
MGVK G+ I E P + L + +AID S + D +
Sbjct: 1 MGVK---GLNKLIKEHSPNAYKEYQLKNLFGRKVAIDASMCLYQFLISVRQSDGQQLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGIFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 96 IAEHS--SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
I EHS + K L+NLF R V + L I RQ +
Sbjct: 10 IKEHSPNAYKEYQLKNLFGRK------------VAIDASMCLYQFLISVRQSDGQQLTND 57
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 58 DGETTSHLSGIFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKR 101
>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
gi|317374909|sp|D0MY34.1|FEN1_PHYIT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
Length = 389
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 56 MGVKDLWGIL---TPIC--ERKPIWELQDKTIAIDLSAWICD-------------SSTIA 97
MG+K L +L P C E + + L +AID S + S +
Sbjct: 1 MGIKGLMKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALT 60
Query: 98 EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
+ +L+ +F RT ++ G+KP++V +GK PV+K + ++RQ+AQ
Sbjct: 61 NADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQ 114
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
S + +F RT ++ G+KP++V +GK PV+K + ++RQ+AQ
Sbjct: 68 SHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQ 114
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 66 TPICERKPIWELQ-----DKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLF 111
PI E P EL+ + +AID I D + + + + +L LF
Sbjct: 3 VPIGELLPKKELELENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLF 62
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+RT L+ G+KP +V +GK P K +EKR + +
Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAETR 98
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S LF+RT L+ G+KP +V +GK P K +EKR + +
Sbjct: 56 SHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAETR 98
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 25/118 (21%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L + I E P I L + +AID S I D +
Sbjct: 1 MGIKALANV---ISEESPKAIKHTDIKSLFGRKVAIDASMSIYQFLIAVRQRDGEQLMSD 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQA--QGRSA 151
+ + +L F+RT ++ G+KP +V +GK P LK + + EKR+ A QG A
Sbjct: 58 TGETTSHLMGFFYRTLRMVDNGIKPCYVFDGKPPDLKSNVLKSRFEKREDATEQGEEA 115
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 91 CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + + +L L FR + L+ + PI+V +GK PV K T+ KR++ + +
Sbjct: 43 ADGAPLMDGQGRITSHLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENA 102
Query: 151 A 151
A
Sbjct: 103 A 103
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
S L FR + L+ + PI+V +GK PV K T+ KR++ + +A
Sbjct: 57 SHLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAA 103
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L + I + P I E++ KT +AID S + D +
Sbjct: 1 MGIKGLTAL---ISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L F+RT ++ G+KP++V +G P LK + ++KR
Sbjct: 58 SGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 56 MGVKDLWGIL-----TPICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQ 102
MG+K L +L I ER P+ K IAID S I D S + +
Sbjct: 1 MGIKQLSKLLKENSANGIKER-PLAYYSSKRIAIDASMSIYQFLIAVRSDGSMLGSGDAT 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L LF+RT ++ LG+ P++V +G P +K + KR +
Sbjct: 60 TS-HLVGLFYRTIRMVELGITPVYVFDGAPPEIKMKELGKRNE 101
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ I + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L +F+RT LL G+KP++V +G+ P LK + KR + + A + ++A + A
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRAERR-EEAEKALKAATEA 117
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
N S +F+RT LL G+KP++V +G+ P LK + KR + + A + ++A +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRAERR-EEAEKALKAAT 115
Query: 214 RA 215
A
Sbjct: 116 EA 117
>gi|170110355|ref|XP_001886383.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638684|gb|EDR02960.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 567
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKH 137
+ +D+S WIC + A + +N LR +F+R LL+ + PIFV +G P +KH
Sbjct: 40 VGVDVSVWICQAQAAAHSQAGENPGLRTIFYRICRLLVNSILPIFVEDGPGRPRVKH 96
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 56 MGVKDLWGILT----PICERKPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+ +L I+ PI P+ + K +A D S A D + +A ++S
Sbjct: 1 MGIHNLTKIIKKYYRPI--EHPLSFYRTKKMAFDASLLTYQYLIAIRSDGAQLA-YNSTS 57
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
++ F++ L +G+KP+FV +GK P +K + I +R + + +A + +A
Sbjct: 58 TSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKNAAEKYSEA 111
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 145 QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
++ G N + S F++ L +G+KP+FV +GK P +K + I +R + + +
Sbjct: 45 RSDGAQLAYNSTSTSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKNA 104
Query: 205 AGRNVQA 211
A + +A
Sbjct: 105 AEKYSEA 111
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 55 IMGVKDLWGILTPICERKP-IWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKNM 105
I+G+ L L P R+ + + +AID S + + + +A +
Sbjct: 3 ILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 63 HLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N S +F+RT LL G+KP++V +GK P LK + KR +
Sbjct: 57 NGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE 102
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
IAID++ W + N +R LF+R LL LG++PIFV +G H
Sbjct: 69 IAIDIAIWQFQTQAA---RGGTNPAIRTLFYRLLRLLSLGIQPIFVFDG-----PHKPAF 120
Query: 142 KRQQAQGRSAGRNVQAGSRARNLF 165
KR + GR G R LF
Sbjct: 121 KRNKRSGRGDGVATAMAKRVIRLF 144
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L + I + P I E++ KT +AID S + D +
Sbjct: 1 MGIKGLTAL---ISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L F+RT ++ G+KP++V +G P LK + ++KR
Sbjct: 58 SGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKR 101
>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
Length = 1109
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 97 AEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
+E + N +L +R LL G+KPIFV +G APV K TI R+ + +A
Sbjct: 6 SEGRTLSNAHLLGFLWRILKLLFYGIKPIFVFDGGAPVQKRRTIANRKHRRTTAA 60
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 150 SAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 205
S GR + + + +R LL G+KPIFV +G APV K TI R+ + +A
Sbjct: 6 SEGRTL-SNAHLLGFLWRILKLLFYGIKPIFVFDGGAPVQKRRTIANRKHRRTTAA 60
>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|317374919|sp|A4S1G4.1|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 389
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGIL---TPICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNM------ 105
MG+K L ++ P ++ +E D+ +AID S I + ++ +
Sbjct: 1 MGIKGLTALMRDNAPGAIKEQKFESYLDRRVAIDASMHIYQFMMVVGRQGEQQLTNEAGE 60
Query: 106 ---YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ + RT +L G+KPI+V +GK PV+K + KR+
Sbjct: 61 VTSHLQGMLNRTCRMLEAGIKPIYVFDGKPPVMKGGELAKRK 102
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S + + RT +L G+KPI+V +GK PV+K + KR+
Sbjct: 63 SHLQGMLNRTCRMLEAGIKPIYVFDGKPPVMKGGELAKRK 102
>gi|393219213|gb|EJD04700.1| hypothetical protein FOMMEDRAFT_153772 [Fomitiporia mediterranea
MF3/22]
Length = 1041
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 54 AIMGVKDLWGILTPICERKPIWEL--QDK-----------TIAIDLSAWICDSSTIAEHS 100
A MGV LW IL P +++ + +L QD + ID S W ++ E
Sbjct: 62 ATMGVPGLWDILRPAGKQRSLTQLAVQDGFERNPGGRRGLRVGIDASIWFYHATYGRE-- 119
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L+ P+FV +G + P LK
Sbjct: 120 -GENPELRTLFFRCARLMSRPFLPLFVFDGPRRPELK 155
>gi|390332710|ref|XP_001197560.2| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like
[Strongylocentrotus purpuratus]
Length = 384
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I D S + + +L +F+RT ++ G+KP +V +GK
Sbjct: 29 RKVAIDASMCIYQFLIAVRQDGSVLTNEEGETTSHLMGIFYRTIRMIEHGLKPCYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR++ + +
Sbjct: 89 PPEMKSGELTKRKEMRAEA 107
>gi|384485605|gb|EIE77785.1| hypothetical protein RO3G_02489 [Rhizopus delemar RA 99-880]
Length = 496
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 80 KTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +AID S I D + + +L +F+RT ++ G+KP++V +G
Sbjct: 195 RKVAIDASMSIYQFMIAVRQQDGQVLQNEEGETTSHLMGMFYRTVRMVDNGIKPVYVFDG 254
Query: 131 KAPVLKHDTIEKRQ 144
K P LK + KR+
Sbjct: 255 KPPTLKSGELAKRK 268
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
+F+RT ++ G+KP++V +GK P LK + KR+
Sbjct: 234 MFYRTVRMVDNGIKPVYVFDGKPPTLKSGELAKRK 268
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 56 MGVKDLWGILT-----PICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSS 101
MG+K L +++ I E I L + +AID S I D + S
Sbjct: 1 MGIKGLTALISQHAPKAIAEHD-IKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNESG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 60 ETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKSGVLAKR 101
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IAID S + + + + +L +F+RT L+ +KP++V +G
Sbjct: 29 RKIAIDASMCLYQFLIAVRQAEGQQLTNDEGETTSHLSGMFYRTIRLVENSIKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K PVLK +EKR
Sbjct: 89 KPPVLKGGELEKR 101
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 144 QQAQGRSAGRNV-QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+QA+G+ + + S +F+RT L+ +KP++V +GK PVLK +EKR
Sbjct: 47 RQAEGQQLTNDEGETTSHLSGMFYRTIRLVENSIKPVYVFDGKPPVLKGGELEKR 101
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 56 MGVKDLWGILTPICERK----PIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L + I + + IAID S + +T+ + +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA---GRNVQAGS 159
++ F+RT L+ G+KPI+V +GK P +K + KR++ ++ + ++ G
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEGD 120
Query: 160 R--ARNLFFRTSYL 171
+ A+ L RT+ +
Sbjct: 121 KEQAKKLMKRTARM 134
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
F+RT L+ G+KPI+V +GK P +K + KR++
Sbjct: 69 FYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKE 103
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +A+D S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR + + +
Sbjct: 89 PPQMKSGELAKRSERRAEA 107
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ S +F+RT +L G+KP++V +GK P +K + KR + + +
Sbjct: 59 ETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEA 107
>gi|213404598|ref|XP_002173071.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
gi|212001118|gb|EEB06778.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
Length = 566
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MGVK L G+L I + I E KT+ +D W+ C + K Y++
Sbjct: 1 MGVKGLLGLLKDIQKPSHIEEFSGKTLGVDAYVWLHKGVFACAKELAFNIETDK--YIQY 58
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R S L GVKP V +G K T EKR+
Sbjct: 59 AMHRISMLTYYGVKPFVVFDGGPLPSKLGTEEKRR 93
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 94 STIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLK-------HDTIEKRQQA 146
T+ + + +L+ +F RT LL G+KP++V +GK P LK HD KR+ A
Sbjct: 52 ETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDA 111
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLK-------HDTIEKRQQA 200
+ S + +F RT LL G+KP++V +GK P LK HD KR+ A
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDA 111
>gi|384250267|gb|EIE23747.1| hypothetical protein COCSUDRAFT_47423 [Coccomyxa subellipsoidea
C-169]
Length = 959
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 56 MGVKDLWGILTP--------------ICERKPIWELQDKTIAIDLSAWICDS----STIA 97
MGV DLW +L + ++ +L+ K +A+D+S W C + + +
Sbjct: 1 MGVSDLWNLLRSEGMVREWNCETDGQLVQKAVAAKLEGKVVAVDVSLWTCQALMQGALVE 60
Query: 98 EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
++ ++ F R L G P+ VL+G AP K +T++ R ++ AG
Sbjct: 61 VFPEEEARVVKVAFDRIINYLRFGCTPVGVLDGDAPEQKLETLQARFFSRFNRAG 115
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ +++ + I + +AID S I + + + +
Sbjct: 1 MGIKQLYQVISEAAPDAIKNGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQVLTSETGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP++V +GK P LK + KR
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGKPPTLKSGELAKR 100
>gi|340056397|emb|CCC50728.1| putative DNA repair protein RAD2 [Trypanosoma vivax Y486]
Length = 753
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNLFFRT 114
MGV+ L +L E + K IAID S W+ + A + + L F R
Sbjct: 1 MGVRGLRRLLDTFGEVTQPEAWRGKRIAIDASIWMAQFRARCAAGDNVEGRILEGFFLRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
LL G++P+FV +G P E +++A+ R+A + RAR +
Sbjct: 61 LKLLFYGIEPVFVFDG--PSTSSKRAEHQRRAERRAALERKRLCHRARQI 108
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D + + + + +L +FFR + L +KP+F+ +G P K +T+E+R++
Sbjct: 44 DGTPLMDREGRVTSHLSGIFFRITTFLENNIKPVFIFDGAPPEFKSETLEQRRE 97
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R + S +FFR + L +KP+F+ +G P K +T+E+R++
Sbjct: 51 REGRVTSHLSGIFFRITTFLENNIKPVFIFDGAPPEFKSETLEQRRE 97
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + + + + + S + +L F+RT ++ G+KP++V +GK
Sbjct: 29 RKIAIDASMTLYQFLIAVRSEGAQLTDSSGETTSHLMGTFYRTIRMVENGIKPVYVFDGK 88
Query: 132 APVLKHDTI----EKRQQAQ 147
P LK + EKR++AQ
Sbjct: 89 PPELKSGELSKRAEKREEAQ 108
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
F+RT ++ G+KP++V +GK P LK + EKR++AQ
Sbjct: 68 FYRTIRMVENGIKPVYVFDGKPPELKSGELSKRAEKREEAQ 108
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLSAWIC---------DSSTIAEHSS 101
MG+K L +L K E + KT +A+D S I D + +
Sbjct: 1 MGIKGLTALLAEHAP-KAFQEHEMKTLFGRKVAVDASMSIYQFLIAVRQKDGELLTNDAG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+ +L F+RT ++ G+KP +V +GK P LK + KR + + + N +A
Sbjct: 60 ETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDNEEA 115
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I + + +AID S I D + +
Sbjct: 1 MGIKQLFSI---IKEEAPEAIKEGEIKQHFGRKVAIDASMSIYSFLIAVRSDGQQLTNDT 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 77 LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFV 127
L+ K +AID L ++ D + + + + +L LF+RT L+ G+K ++V
Sbjct: 22 LRGKAVAIDAYNALYQFLAAIRQPDGTPLMDSRGRITSHLSGLFYRTINLIEHGIKVVYV 81
Query: 128 LEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+GK P +K IE+R++ + +A + +A
Sbjct: 82 FDGKPPEIKSIEIERRKKVKSEAAKKYEEA 111
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT L+ G+K ++V +GK P +K IE+R++ + +A + +A + L+
Sbjct: 59 SHLSGLFYRTINLIEHGIKVVYVFDGKPPEIKSIEIERRKKVKSEAAKKYEEAIKKGDLE 118
Query: 219 G 219
Sbjct: 119 A 119
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 54 AIMGVKDLWGILTP-ICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKN 104
I G+ L G P + I + +AID S I D + + + +
Sbjct: 2 GIQGLAKLIGDHAPGAMKENEIKNYFGRKVAIDASMSIYQFLIAVRQDGNMLTNDAGEAT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
+L +F+RT ++ G+KP++V +GK P +K + E+R++AQ
Sbjct: 62 SHLMGMFYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQ 108
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
+A S +F+RT ++ G+KP++V +GK P +K + E+R++AQ
Sbjct: 59 EATSHLMGMFYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQ 108
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWIC---------DSSTIAEH 99
MG+K L + I + P I E++ KT +AID S + D +
Sbjct: 1 MGIKGLTAL---ISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L F+RT ++ G+KP++V +G P LK + ++KR
Sbjct: 58 SGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLKKR 101
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +FFRT ++ G++PI+V +GK P LK +E R+Q
Sbjct: 67 HLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQ 106
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 147 QGRSAGRNVQAG---SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+G+S +AG S +FFRT ++ G++PI+V +GK P LK +E R+Q
Sbjct: 51 EGQSVELTNEAGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQ 106
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLS--------AWICDSSTIAEHSSQK 103
MG+K+L+ ++ C + I + +AID S A + S +
Sbjct: 1 MGIKNLYQVIKENCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSGGEQLMNESGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQ 102
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 39 STIAEHSSQ---KNMYLRAIMGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC 91
S +EHSS ++ A MG+ L ++ + I + +AID S I
Sbjct: 33 SLCSEHSSSPVGRSHCSCATMGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIY 92
Query: 92 D--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L +F+RT ++ G+KP++V +GK P LK + KR
Sbjct: 93 QFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKR 152
Query: 144 QQ 145
+
Sbjct: 153 SE 154
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P LK + KR +
Sbjct: 118 GMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSE 154
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + R QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKRLQQA 114
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + R QA
Sbjct: 67 MFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKRLQQA 114
>gi|393235585|gb|EJD43139.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 474
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 82 IAIDLSAWICDSSTIAEHSS-QKNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDT 139
+ IDLS W+ +++ KN +R LFFR ++LL + + P+FV +G + P KH
Sbjct: 33 VGIDLSIWLGHMQFLSKKPECGKNTGIRLLFFRCAHLLAMSILPVFVFDGLQWPAYKHGK 92
Query: 140 IEK 142
K
Sbjct: 93 ARK 95
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 52 LRAIMGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICD--------SSTIAEH 99
LR MG++ L ++ + I + +AID S I +
Sbjct: 10 LRTAMGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNE 69
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +GK P LK + KR +
Sbjct: 70 EGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSE 115
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P LK + KR +
Sbjct: 80 MFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSE 115
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
+L+ + IAID L ++ D + + + + +L L +RT+ + G+KP++
Sbjct: 18 DLKGRVIAIDAYNSLYQFLSIIRQPDGTPLRDSRGRVTSHLSGLLYRTANYMAEGIKPVY 77
Query: 127 VLEGKAPVLKHDTIEKRQQAQGR 149
V +G+ P LK TI++R + R
Sbjct: 78 VFDGRPPELKMRTIQERMHVRTR 100
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S L +RT+ + G+KP++V +G+ P LK TI++R + R+ +A R L+
Sbjct: 56 SHLSGLLYRTANYMAEGIKPVYVFDGRPPELKMRTIQERMHVRTRALEEWEEALERGDLE 115
Query: 219 GLQT 222
+T
Sbjct: 116 EART 119
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 80 KTIAIDLS--------AWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S A + + + + ++ F+RT LL G+KP++V +GK
Sbjct: 29 RKIAIDASMSLYQFLIAVRSEGAQLTSADGETTSHIMGTFYRTIRLLENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEK----RQQAQGRSAGRNVQAG 158
P +K +EK RQ+AQ +S + +AG
Sbjct: 89 PPQMKSSELEKRADRRQEAQ-KSLEKAEEAG 118
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEK----RQQAQGRSAGRNVQAG 212
F+RT LL G+KP++V +GK P +K +EK RQ+AQ +S + +AG
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPQMKSSELEKRADRRQEAQ-KSLEKAEEAG 118
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDL---------SAWICDSSTIAEHSSQKNMY 106
MGV+ +G L P E + L++KT+AID S + D S + +
Sbjct: 1 MGVQ--FGDLIPKTEISLKF-LRNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITST 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+F++T Y+L G+ PI+V +GK+ LK T E+R++++
Sbjct: 58 YNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSR 98
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 152 GRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+N S +F++T Y+L G+ PI+V +GK+ LK T E+R++++ + ++A
Sbjct: 49 NKNGDITSTYNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEA 108
Query: 212 GSRARLKGLQ 221
+ L+ +Q
Sbjct: 109 KEQNNLEEMQ 118
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 69 CERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
CE K + + +AID S I + +T+ + +L +F+RT ++
Sbjct: 21 CEIKSYF---GRKVAIDASMSIYQFLIAVRQEGNTLMNAEGESTSHLMGMFYRTIRMIES 77
Query: 121 GVKPIFVLEGKAPVLKHDTIEKR 143
G+KP++V EGK P +K + KR
Sbjct: 78 GIKPVYVFEGKPPSMKAGELAKR 100
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
++ S +F+RT ++ G+KP++V EGK P +K + KR + S +A +
Sbjct: 59 ESTSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKRADRRIESTKELAKAEAEE 118
Query: 216 RLKGLQ 221
L+ ++
Sbjct: 119 DLEAIE 124
>gi|170116934|ref|XP_001889656.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635371|gb|EDQ99679.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 515
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 56 MGVKDLWGILTPICERKPIWEL-----------QDKT--IAIDLSAWICDSSTI-----A 97
MG+ ++W L P+ + EL +++T + ID S WI + +
Sbjct: 1 MGIPNVWKELEPLKRSVSLVELAVREGFLRNARKNRTLVVGIDASVWIVECQAVFYVRGL 60
Query: 98 EHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQ 145
+ +N LR LFFR ++LL + PIFV +G + P K T K++
Sbjct: 61 HTQAGENPELRTLFFRLAHLLHYPITPIFVFDGPERPNCKCGTTVKKKD 109
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLK----HDTIEKRQQ 145
D + + + ++ LF+RT L+ GVKPI+V +GK P +K D I +RQQ
Sbjct: 49 DGTPLIDSKGNITSHISGLFYRTINLIEEGVKPIYVFDGKPPEMKKKEIEDRINRRQQ 106
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT L+ GVKPI+V +GK P +K IE R + + A + +A +++
Sbjct: 62 SHISGLFYRTINLIEEGVKPIYVFDGKPPEMKKKEIEDRINRRQQYAEKYQKAKQEGKIE 121
>gi|17510005|ref|NP_491168.1| Protein CRN-1 [Caenorhabditis elegans]
gi|75023012|sp|Q9N3T2.1|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
gi|373220153|emb|CCD72553.1| Protein CRN-1 [Caenorhabditis elegans]
Length = 382
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+T+AID S + D S + + +L + RT + GVKP++V +GK
Sbjct: 29 RTVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGMLNRTVRMFENGVKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQ 145
P +K +EKR +
Sbjct: 89 PPDMKGGELEKRSE 102
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDL---------SAWICDSSTIAEHSSQKNMY 106
MGV+ +G L P E + L++KT+AID S + D S + +
Sbjct: 1 MGVQ--FGDLIPKTEISLKF-LRNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITST 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+F++T Y+L G+ PI+V +GK+ LK T E+R++++
Sbjct: 58 YNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSR 98
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 152 GRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+N S +F++T Y+L G+ PI+V +GK+ LK T E+R++++ + ++A
Sbjct: 49 NKNGDITSTYNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEA 108
Query: 212 GSRARLKGLQ 221
+ L+ +Q
Sbjct: 109 KEQNNLEEMQ 118
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L + I E P I L + +AID S I D +
Sbjct: 1 MGIKGLTAL---INEHAPKAITEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L F+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 58 SGETTSHLMGFFYRTIRIVENGIKPAYIFDGKPPELKSGVLAKR 101
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I T+ + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGETLQSEEGETTSHLMGMFYRTIRMMEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQ 145
P LK + KR +
Sbjct: 89 PPQLKSGELAKRSE 102
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 149 RSAGRNVQA-----GSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
R G +Q+ S +F+RT ++ G+KP++V +GK P LK + KR +
Sbjct: 47 RQGGETLQSEEGETTSHLMGMFYRTIRMMEHGIKPVYVFDGKPPQLKSGELAKRSE 102
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 53 RAIMGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTI 96
R MGVK L ++ E+ P L+ + IA+D S + + S++
Sbjct: 13 RYRMGVKKLRSLIE---EQAPKAIKNTEFKALEGRIIAVDTSNNLYQFLTAIGTENGSSL 69
Query: 97 AEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
+ +L+ F+RT + G+KP+FV +G P LK + KR A+ + A N+
Sbjct: 70 MNSIGETTSHLQGTFYRTIKFMSNGIKPVFVFDGAPPTLKSGELAKR-SAKKKEAKENL 127
>gi|170120029|ref|XP_001891090.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633724|gb|EDQ98259.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 473
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKH 137
+ +D+S WIC + A + +N LR +F+R LL+ + PIFV +G P +KH
Sbjct: 40 VGVDVSVWICQAQAAAHSQAGENPGLRTIFYRICRLLVNSILPIFVEDGPGRPRVKH 96
>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
Length = 328
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 23/133 (17%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGVK I+T E + +L+ +T+AID L ++ D S + + + +
Sbjct: 1 MGVK-FKDIVT--AEEINLKDLEGRTVAIDAYNTLYQFLSGIRQRDGSPLMDANGNVTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR--------QQAQGRSAGRNVQAG 158
L + +RT+ ++ G+KP++V +G K T+EKR Q+ + A N++
Sbjct: 58 LSGILYRTASIVDKGIKPVYVFDGDVSEYKTKTVEKRRALREEANQKYEEAKAAGNIE-- 115
Query: 159 SRARNLFFRTSYL 171
AR R+S L
Sbjct: 116 -EARKYAIRSSRL 127
>gi|170102406|ref|XP_001882419.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642791|gb|EDR07046.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 82 IAIDLSAWICDSSTIAEHS-------SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-P 133
+ +D+S WIC + + HS +N LR +FFR +LL ++PIF+ +G++ P
Sbjct: 37 VGVDVSIWICQAQAVV-HSIRGPGTREGENPALRIIFFRICHLLARCIEPIFIFDGRSRP 95
Query: 134 VLK 136
+ K
Sbjct: 96 LFK 98
>gi|399218750|emb|CCF75637.1| unnamed protein product [Babesia microti strain RI]
Length = 452
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 20/107 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWICD----------SSTIAE 98
MG+K G+ I E P + L + IAID S + ++++
Sbjct: 1 MGIK---GLTKLILENAPEGYQEITLANLSGQIIAIDASMTLYQFMIAIRQGNFATSLVN 57
Query: 99 HSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ + ++ L R + LL LG++PI+V +G+ P K DT+ KR++
Sbjct: 58 ANGEPTSHIAGLMLRVAALLELGIRPIYVFDGEPPQAKSDTLLKRKE 104
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
N + S L R + LL LG++PI+V +G+ P K DT+ KR++
Sbjct: 59 NGEPTSHIAGLMLRVAALLELGIRPIYVFDGEPPQAKSDTLLKRKE 104
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + + + + + +L +F+RT L+ G+KP++V +GK
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGMFYRTIRLVEQGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
P LK + KR + + A + +QA A N
Sbjct: 89 PPNLKGGELAKRAEKRD-EAQKLLQAAEEAGN 119
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+ S +F+RT L+ G+KP++V +GK P LK + KR + + A + +QA A
Sbjct: 59 ETTSHLMGMFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAEKRD-EAQKLLQAAEEA 117
>gi|380484575|emb|CCF39910.1| flap structure-specific endonuclease [Colletotrichum higginsianum]
Length = 698
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 159
S N +R LF+R LL LG+ PIFV +G H KR + GR G
Sbjct: 3 SGGTNPAIRTLFYRLVRLLSLGIHPIFVFDG-----PHKPAFKRNKRSGRGDGVATAMAK 57
Query: 160 RARNLF 165
R LF
Sbjct: 58 RVTRLF 63
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 73 PIWELQDKTIAID---------LSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVK 123
PI L KT+AID S + D S + + +F++T Y+L +
Sbjct: 15 PIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNRKGEITSTYNGIFYKTIYMLENDIT 74
Query: 124 PIFVLEGKAPVLKHDTIEKRQQAQGRS 150
P++V +GK P LK T E+R++ + ++
Sbjct: 75 PVWVFDGKPPKLKEKTREERRKMREKA 101
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 152 GRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
R + S +F++T Y+L + P++V +GK P LK T E+R++ + ++ +A
Sbjct: 49 NRKGEITSTYNGIFYKTIYMLENDITPVWVFDGKPPKLKEKTREERRKMREKAKEEFTKA 108
Query: 212 GSRARLKGLQ 221
+ +Q
Sbjct: 109 KEMENIDEMQ 118
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 56 MGVKDLWGILTPICERK----PIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L + I + + IAID S + +T+ + +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA---GRNVQAGS 159
++ F+RT L+ G+KP++V +GK P +K + KR++ ++ + ++ G
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGD 120
Query: 160 R--ARNLFFRTSYL 171
+ A+ L RT+ +
Sbjct: 121 KEQAKKLMKRTARM 134
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
F+RT L+ G+KP++V +GK P +K + KR++
Sbjct: 69 FYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKE 103
>gi|67610024|ref|XP_667077.1| flap endonuclease 1 [Cryptosporidium hominis TU502]
gi|54658174|gb|EAL36849.1| flap endonuclease 1 [Cryptosporidium hominis]
Length = 454
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ S + ++ + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 18 NLTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 68
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ S + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 25 ESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 68
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
>gi|150866513|ref|XP_001386143.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
gi|149387769|gb|ABN68114.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
Length = 676
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MGV L L I + + + KT+AID W+ C E ++K Y+ +
Sbjct: 1 MGVTGLLPCLKEIQNPGTLEQYRGKTLAIDTYGWLHRALISCAEELCLERPTRK--YITS 58
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE----KRQQAQGRSAGRNVQAGSRA 161
+ R L GV+P FV +G A K +T KRQ+A+ + A +AG R+
Sbjct: 59 ILKRVDMLRHFGVEPYFVFDGAALPTKAETANERRVKRQEAR-KKAEEYSKAGKRS 113
>gi|47212193|emb|CAF90074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGK 88
Query: 132 APVLK 136
P LK
Sbjct: 89 PPQLK 93
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + D + S + +L F+RT ++ G+KP++V +GK
Sbjct: 29 RKIAIDASMSLYQFLIAVRQDGQVLMTESGETTSHLMGFFYRTIRMVDNGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P +K + KR
Sbjct: 89 PPTMKSGELAKR 100
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L ++ + + I + +AID S + + + + +
Sbjct: 1 MGIKGLSQLIADVAPFAVKEGEIKTFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGS 159
+L F+RT LL G+KP++V +GK P LK + E+R++AQ ++ + +AG+
Sbjct: 61 TSHLMGTFYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEAQ-KALDKATEAGA 119
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGRSAGRNVQAGS 213
F+RT LL G+KP++V +GK P LK + E+R++AQ ++ + +AG+
Sbjct: 68 FYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEAQ-KALDKATEAGA 119
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P +K + + KR
Sbjct: 53 TLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKR 101
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K + + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKR 101
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 56 MGVKDLWGILTPICERK----PIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L + I + + IAID S + +T+ + +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR----QQAQGRSAGRNVQAG 158
++ F+RT L+ G+KP++V +GK P +K + KR Q+AQ + ++ G
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQ-EQLDKALEEG 119
Query: 159 SR--ARNLFFRTSYL 171
+ A+ L RT+ +
Sbjct: 120 DKEQAKKLMKRTARM 134
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
F+RT L+ G+KP++V +GK P +K + KR++
Sbjct: 69 FYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKE 103
>gi|322700750|gb|EFY92503.1| DNA-repair protein rad2 [Metarhizium acridum CQMa 102]
Length = 426
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQI---IKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++VL+GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVLDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++VL+GK P LK + KR + + + + QA
Sbjct: 67 MFYRTIRMMENGIKPVYVLDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|323354056|gb|EGA85902.1| Rad27p [Saccharomyces cerevisiae VL3]
Length = 382
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 435
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 56 MGVKD-LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV+ W L + +RK + L K +A+DLS W+ T A + +LR L FR
Sbjct: 1 MGVRGGFWDELRVVSKRKSLDWLHGKRLAVDLSYWVVQQQT-AVGGLVRKPHLRILLFRV 59
Query: 115 SYLL-LLGVKPIFVLEGKAP 133
L+ GV P+FV++G P
Sbjct: 60 VNLISRAGVLPVFVVDGTFP 79
>gi|171679661|ref|XP_001904777.1| hypothetical protein [Podospora anserina S mat+]
gi|170939456|emb|CAP64684.1| unnamed protein product [Podospora anserina S mat+]
Length = 379
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL----TPICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K+L+ I+ + I + +AID S I D + Q
Sbjct: 1 MGIKNLFQIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEDGQT 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|435850378|ref|YP_007311964.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661008|gb|AGB48434.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 338
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 74 IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I EL K +A+D + D + + + +L + +R + L+ G+KP
Sbjct: 16 ISELSHKVVAVDAYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTSLMEEGIKP 75
Query: 125 IFVLEGKAPVLKHDTIEKR 143
+FV +GK LK TIEKR
Sbjct: 76 VFVFDGKPSHLKARTIEKR 94
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKR 101
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQI---IKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDS 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D + + + + +L + +R S ++ +G+KPIFV +G+ P K IE+R++
Sbjct: 43 DGTPLMDSKGRITSHLSGILYRVSNMVEVGIKPIFVFDGEPPEFKKKEIERRRK 96
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S + +R S ++ +G+KPIFV +G+ P K IE+R++
Sbjct: 56 SHLSGILYRVSNMVEVGIKPIFVFDGEPPEFKKKEIERRRK 96
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGVK L I+ P E+ +L+ + I+ID L ++ D +++ + +
Sbjct: 1 MGVK-LKDIIQP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR-----NVQAGSRA 161
L + +R S ++ +KPI+V +G LK +TI++R+Q + S + Q A
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEA 117
Query: 162 RNLFFRTSYL 171
R R+S L
Sbjct: 118 RKYAMRSSKL 127
>gi|255634418|gb|ACU17574.1| unknown [Glycine max]
Length = 151
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P ++ +E + IAID S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 76 ELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126
+L D+ +A+D L ++ D + + + +L LF+RT+ LL ++P++
Sbjct: 18 DLNDRVLAVDAMNVLYQFLSIIRQRDGTPLKDSDGNITSHLSGLFYRTTKLLDSNIRPVY 77
Query: 127 VLEGKAPVLKHDTI----EKRQQAQ 147
V +G+ P LK EKR++AQ
Sbjct: 78 VFDGEMPDLKATEAAQRREKREEAQ 102
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L LF+RT L+ G+K ++V +GK P +K+ IE+R++ + +
Sbjct: 46 DGTPLMDSKGRITSHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAV 105
Query: 152 GRNVQA 157
+ +A
Sbjct: 106 KKYEEA 111
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
S LF+RT L+ G+K ++V +GK P +K+ IE+R++ + + + +A
Sbjct: 59 SHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEA 111
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P +K + KR
Sbjct: 197 TLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 245
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S + +F RT LL G+KP++V +GK P +K + KR
Sbjct: 207 SHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 245
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P E+++ + +AID S I D + +
Sbjct: 1 MGIKHLYQL---IQEHSPDAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSET 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 60 DLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNL 110
DL ++ I + EL+ K I+ID L ++ D + + + + +L L
Sbjct: 2 DLAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGL 61
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
F+RT +L G+ PI+V +GK P K +E+R
Sbjct: 62 FYRTISILEEGIIPIYVFDGKPPEQKAQELERR 94
>gi|409075870|gb|EKM76246.1| hypothetical protein AGABI1DRAFT_9336, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 528
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-------------IAIDLSAWICDSSTIAEHSSQ 102
MGV LW +L P + + + EL K I ID S W AE+ +
Sbjct: 1 MGVAGLWDVLKPAAKTRSLTELAVKEGFQTNPKGLRGYRIGIDASIWFFH----AEYGKE 56
Query: 103 -KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L P+FV +G K P K
Sbjct: 57 GENPVLRTLFFRCATLTKAPFLPLFVFDGPKRPDFK 92
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +A+D S I D + + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGMFYRTIRMIEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR + + +
Sbjct: 89 PPQMKSGELAKRSERRAEA 107
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ S +F+RT ++ G+KP++V +GK P +K + KR + + +
Sbjct: 59 ETTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEA 107
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 67 PICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYL 117
P + I L + +AID S I D + + + +L F+RT +
Sbjct: 47 PAAQEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGFFYRTIRI 106
Query: 118 LLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ G+KP +V +GK P LK + KR
Sbjct: 107 VENGIKPAYVFDGKPPDLKSGVLSKR 132
>gi|426193684|gb|EKV43617.1| hypothetical protein AGABI2DRAFT_48292, partial [Agaricus bisporus
var. bisporus H97]
Length = 528
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-------------IAIDLSAWICDSSTIAEHSSQ 102
MGV LW +L P + + + EL K I ID S W AE+ +
Sbjct: 1 MGVAGLWDVLKPAAKTRSLTELAVKEGFQANPKGLRGYRIGIDASIWFFH----AEYGKE 56
Query: 103 -KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L P+FV +G K P K
Sbjct: 57 GENPVLRTLFFRCATLTKAPFLPLFVFDGPKRPDFK 92
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 58 VKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYL 117
+K+ +G IC I+ L A D + + + +L LF+RT +
Sbjct: 23 IKNQFGRKVAICRSMSIYSF--------LIAVRSDGQQLMSETGETTSHLMGLFYRTMRM 74
Query: 118 LLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ G+KP++V +G P LK + KR Q
Sbjct: 75 VDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|395330939|gb|EJF63321.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 429
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 67 PIC-ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSY 116
P C + I L + +AID S I D + + + +L F+RT
Sbjct: 33 PCCPQEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGFFYRTIR 92
Query: 117 LLLLGVKPIFVLEGKAPVLKHDTIEKR--QQAQGRSAGRNVQAGSRARNL 164
++ G+KP +V +GK P LK + KR ++ + + G + A ++
Sbjct: 93 MVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDGEEAKETGTAEDV 142
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I + E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQI---VKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +A+D S I D + + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGMFYRTIRMIEHGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRS 150
P +K + KR + + +
Sbjct: 89 PPQMKSGELAKRSERRAEA 107
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
+ S +F+RT ++ G+KP++V +GK P +K + KR + + +
Sbjct: 59 ETTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEA 107
>gi|342182627|emb|CCC92106.1| putative exonuclease [Trypanosoma congolense IL3000]
Length = 783
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 28/117 (23%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAW-------------------------- 89
MG+K LW + P+C+R + + + + +A+D+ W
Sbjct: 1 MGIKGLWSEVKPVCQRSHLSKFRGQRVAVDMYVWLHRGIIGSVELGTEADIEEFRSYAKS 60
Query: 90 ICDSSTIA-EHSSQKNM-YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+ DSS A E++ N L+ + R LL G+ P+ V +G +K E+R+
Sbjct: 61 LLDSSAAAVEYTVPVNTRMLQCVMSRVDLLLKCGIHPVLVFDGAEIPMKRGKEEERK 117
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGVK L I+ P E+ +L+ + I+ID L ++ D +++ + +
Sbjct: 1 MGVK-LKDIIRP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR-----NVQAGSRA 161
L + +R S ++ +KPI+V +G LK +TI++R+Q + S + Q A
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEA 117
Query: 162 RNLFFRTSYL 171
R R+S L
Sbjct: 118 RKYAMRSSKL 127
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I + +AID S I D + S
Sbjct: 1 MGIKQLFSI---IKEEAPDAIKEGDIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + +R Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRFQ 102
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L +L E P I L + +AID S I D +
Sbjct: 1 MGIKGLTALL---LENAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTND 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 58 AGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKAGVLAKR 101
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQI---IKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDS 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|170117214|ref|XP_001889795.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635261|gb|EDQ99571.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 533
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 82 IAIDLSAWICDSSTIAEHSSQK-----NMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ +D+S WIC + A HS + N LR +FFR +LL ++PIF+ +G
Sbjct: 40 VGVDVSVWICQAQA-AVHSMPRTQQGENPALRIIFFRICHLLAQSIQPIFIADG 92
>gi|440296320|gb|ELP89147.1| hypothetical protein EIN_485090 [Entamoeba invadens IP1]
Length = 688
Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--------STIAEHSSQKNMYL 107
MGV LW ++ P +L+ KT+AID+ +I S ST MY
Sbjct: 1 MGVHKLWEVIGEGKTVNPK-DLKGKTVAIDIDGFIVRSVSGRRYENSTKVARECIIRMYC 59
Query: 108 RNLFFRTSYLLLLGVKPIFVLEGKA-PVLKHDTIEKRQQAQ 147
+ L+F G+KP+FV +G LK T+ KR++ +
Sbjct: 60 KCLYF--------GIKPVFVFDGNTNTFLKESTLSKRKKQR 92
>gi|357122637|ref|XP_003563021.1| PREDICTED: flap endonuclease 1-B-like [Brachypodium distachyon]
Length = 413
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWICD---------SSTIAEHSSQ 102
MG+K L +L R + + + + + IAID S I + + + +
Sbjct: 1 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ + RT LL G+KP+FV +G+ P LK + KR
Sbjct: 61 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKRELAKR 101
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 93 SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
S + + + +L +FFRT ++ G++PI+V +GK P LK+ ++ R+Q
Sbjct: 94 SVELTNDAGEVTSHLNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQ 146
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 147 QGRSAGRNVQAG---SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+G+S AG S +FFRT ++ G++PI+V +GK P LK+ ++ R+Q
Sbjct: 91 EGQSVELTNDAGEVTSHLNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQ 146
>gi|17555016|ref|NP_498361.1| Protein GEN-1 [Caenorhabditis elegans]
gi|351050616|emb|CCD65214.1| Protein GEN-1 [Caenorhabditis elegans]
Length = 434
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEHSSQKNMYLRNLFFR 113
M + +W + + P ++DKT++ID W+ +S A H N YL F R
Sbjct: 1 MTINGIWEWANHVVRKVPNETMRDKTLSIDGHIWLYESLKGCEAHHQQTPNSYLVTFFTR 60
Query: 114 TSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL---FFRTS 169
LL L + PI V + A H E + Q + R S NL ++T+
Sbjct: 61 IQRLLELKIIPIVVFDNINASSSAH---ESKDQNEFVPRKRRSFGDSPFTNLVDHVYKTN 117
Query: 170 YLLL-LGVKPI 179
LL LG+K I
Sbjct: 118 ALLTELGIKVI 128
>gi|303317440|ref|XP_003068722.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240108403|gb|EER26577.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 789
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKHDTI 140
IAID+S W+ + N LR LF+R + L+ L V PIFV +G P K +
Sbjct: 35 IAIDVSIWLFQAQAA---QGGLNPELRALFYRLARLISLPVHPIFVFDGSGRPEYKRGKL 91
Query: 141 EKRQQAQGRSAGRNVQAGSRARNLF 165
R GRS N+++ R LF
Sbjct: 92 VIR---NGRSGAWNIRSSKRLIELF 113
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ + AG + + S +F+RT ++ G+KP +V +G P LK ++KR+ +
Sbjct: 47 RQQDGVQLAGEDGETTSHLMGMFYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRKVRRE 106
Query: 203 RSAGRNVQAGSRARL 217
+ + +A +A +
Sbjct: 107 DTEAKLKEATEQAEI 121
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K+L T I E+ P I + +AID S + D +A
Sbjct: 1 MGIKNL---ATLISEQVPNAIKSRDIKYFHGRKVAIDASMSLYQFLIAVRQQDGVQLAGE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+ +L +F+RT ++ G+KP +V +G P LK ++KR+
Sbjct: 58 DGETTSHLMGMFYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRK 102
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I D + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQDGNVLTNEDGDTTSHLMGMFYRTIRMVDHGIKPLYVFDGK 88
Query: 132 APVLKHDTI----EKRQQAQ 147
P LK + EKR++A+
Sbjct: 89 PPDLKSGELSKRAEKREEAE 108
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDS----------STIAEHSS 101
MG+K L L +++ I L + IAID S W+ + +
Sbjct: 1 MGIKGLARFLVDNAPKSIQQQSIDSLIGRIIAIDASMWMYQFLAAIREGSQWGNLTNEAG 60
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
+ ++ + RT LL G+KP+FV +G+ P LK + + KR++ + ++
Sbjct: 61 ESTSHISGMLSRTIRLLEAGIKPVFVFDGEPPELKMEELMKRKERREKA 109
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
++ S + RT LL G+KP+FV +G+ P LK + + KR++ + ++
Sbjct: 61 ESTSHISGMLSRTIRLLEAGIKPVFVFDGEPPELKMEELMKRKERREKA 109
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
D + + + + +L LF+RT ++ G+ PIFV +GK P K + IE+R++
Sbjct: 25 DGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKR 78
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF+RT ++ G+ PIFV +GK P K + IE+R++
Sbjct: 38 SHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKR 78
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S + + + + + +L +F+RT L+ G+KP+++ +GK
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGMFYRTIRLVEQGIKPVYIFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
P LK + KR + + A + +QA A N
Sbjct: 89 PPNLKGGELAKRAEKRD-EAQKLLQAAEEAGN 119
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+ S +F+RT L+ G+KP+++ +GK P LK + KR + + A + +QA A
Sbjct: 59 ETTSHLMGMFYRTIRLVEQGIKPVYIFDGKPPNLKGGELAKRAEKRD-EAQKLLQAAEEA 117
>gi|323454359|gb|EGB10229.1| hypothetical protein AURANDRAFT_53007 [Aureococcus anophagefferens]
Length = 538
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
D++ + + +L+ RT +L G KP+FV +G AP LK T++ R +A+
Sbjct: 51 DATHLTNSRGEATSHLQGFANRTLRMLEAGAKPVFVFDGAAPELKGKTLKGRSEAK 106
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
+A S + RT +L G KP+FV +G AP LK T++ R +A+
Sbjct: 61 EATSHLQGFANRTLRMLEAGAKPVFVFDGAAPELKGKTLKGRSEAK 106
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 21/104 (20%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI---------CDSSTIAEH 99
MG+K L+ I I E P E+++ + +AID A++ D +
Sbjct: 1 MGIKSLYQI---ISENAPDAIKAGEIKNQFGRKVAID--AYVKTAQRYRASTDEEQLTNE 55
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
S + +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 56 SGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 99
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 94 STIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 52 ETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 94 STIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 52 ETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|253742855|gb|EES99522.1| Hypothetical protein GL50581_3265 [Giardia intestinalis ATCC 50581]
Length = 834
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MG+ LW ILT + + + L KT+++D+S + + +KN ++ F
Sbjct: 1 MGIAGLWNILTRMSKGLNRADYLNKKTVSVDISGLLYSYYYTSSDQERKNYHVHAAFVII 60
Query: 115 SYLLLLGVKPIFVLEGKAP 133
+ +L LG+ P+FV + P
Sbjct: 61 TRILSLGLVPVFVFDSGVP 79
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 56 MGVKDLWGILTPICERK-PIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV L ++ C++ + L +K++A+D L ++ D + + +
Sbjct: 1 MGVTALRELIPSKCKKTLELKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L LF+RT +L G+K +V +G P LK IE+RQ+ + + + +A R
Sbjct: 61 HLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYEEAVRRG 116
>gi|395327708|gb|EJF60105.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 604
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-------------IAIDLSAWICDSSTIAEHSSQ 102
MGV LW +L P + + + L K + ID S W ++ E
Sbjct: 1 MGVPGLWDVLRPAGKMRSLTHLSVKDGFEANPDGKRGFRVGIDASIWFYHATYGRE---G 57
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L+ + P+FV +G K P +K
Sbjct: 58 ENPELRTLFFRCTRLMGMPFLPLFVFDGPKRPEIK 92
>gi|72392705|ref|XP_847153.1| exonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359240|gb|AAX79683.1| exonuclease, putative [Trypanosoma brucei]
gi|70803183|gb|AAZ13087.1| exonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 797
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 29/132 (21%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD 60
MG+K LWG + P+C + + + + +D+ W+ RA+ G D
Sbjct: 1 MGIKGLWGEVKPVCRDAHLEKFRGSRVGVDMYVWL----------------HRAVSGSVD 44
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM-YLRNLFFRTSYLLL 119
L R + L D ++ T++ H N +L + + LL
Sbjct: 45 LSTEANVEMLRAHVESLSDPSV------------TVSAHPIPLNTKFLHWVMSQVELLLR 92
Query: 120 LGVKPIFVLEGK 131
GVKP+ V +G+
Sbjct: 93 YGVKPVLVFDGR 104
>gi|320038686|gb|EFW20621.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 845
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKHDTI 140
IAID+S W+ + N LR LF+R + L+ L V PIFV +G P K +
Sbjct: 91 IAIDVSIWLFQAQAA---QGGLNPELRALFYRLARLISLPVHPIFVFDGSGRPEYKRGKL 147
Query: 141 EKRQQAQGRSAGRNVQAGSRARNLF 165
R GRS N+++ R LF
Sbjct: 148 VIR---NGRSGAWNIRSSKRLIELF 169
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + +L + FR L G+KP+FV +GK P LK +T +R++ + +
Sbjct: 44 DGTPLMDAKGRVTSHLSGILFRMVNFLEKGIKPVFVFDGKPPELKQETNAERKKLRDEAG 103
Query: 152 GRNVQAGSRA 161
+ +A R
Sbjct: 104 EKYKEAVERG 113
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
S + FR L G+KP+FV +GK P LK +T +R++ + + + +A R
Sbjct: 57 SHLSGILFRMVNFLEKGIKPVFVFDGKPPELKQETNAERKKLRDEAGEKYKEAVERG 113
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P ++ +E + IAID S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKR 101
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKR 101
>gi|407394233|gb|EKF26855.1| hypothetical protein MOQ_009436 [Trypanosoma cruzi marinkellei]
Length = 772
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 26/115 (22%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI-------------CDSSTIAEHSSQ 102
MG+K LW + P+C + + + + +A+D+ W+ D+ E +
Sbjct: 1 MGIKGLWSEVRPVCRQSHLSNFRGQRVAVDMYVWLHRGILGSVQLGTSADAEAFMESAEM 60
Query: 103 KN-------------MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+ +L+ + R +L GV P+ V +G + +K T +RQ
Sbjct: 61 TSEAADVGGSVLLSYKFLQFVVGRVDLMLRCGVHPVLVFDGASIPMKQGTEAERQ 115
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I+ E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQIVK---EEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDS 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKR 101
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKR 101
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+F+RT ++ G+KP++V +GK P +K + +EKR +
Sbjct: 3 MFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTE 38
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P +K + +EKR +
Sbjct: 3 MFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTE 38
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
D T+ + +L F+RT ++ G+KP +V +GK P LK + KR
Sbjct: 14 DGETLQNEQGETTSHLMGFFYRTIRMVENGIKPCYVFDGKPPELKSGVLAKR 65
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 54 AIMGVKDLWGILTPIC-ERKPIWELQDKTIAIDLSAWICD-------------SSTIAEH 99
I G+ P C + + + + Q K +AID S + + +
Sbjct: 29 GIHGLGPFLAKEAPGCLKERSLQDFQGKKLAIDASMAMYQFLIAVRSTGENGVAQPLTSA 88
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
S ++ +L+ F+RT ++ G++P++V +GK P LK I R + A R
Sbjct: 89 SGEETSHLQGFFWRTIAMVKAGIRPLYVFDGKPPSLKSGEIASRNLRRDEGAKR 142
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ---- 147
D + + + + +L L +R + L+ +G+KPI+V +G+ P K +E+R + +
Sbjct: 43 DGTPLKDSQGRITSHLSGLLYRNANLIEIGIKPIYVFDGEPPEFKKKELERRAELKKEAE 102
Query: 148 ---------GRSAGRNVQAGSRARNLFFRTSYLLL--LGV 176
G A + QA ++ +S LL LG+
Sbjct: 103 EKWKIALEAGEDAKKYAQATAKVDEYIVESSKTLLEYLGI 142
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ GVKP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGVKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ GVKP++V +GK P LK + KR + + + + QA
Sbjct: 67 MFYRTIRMMENGVKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR---NVQAGSR 160
N +L+ +F RT LL G+KP++V +GK P LK + KR + + ++AG++
Sbjct: 95 NRHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNK 154
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR---NVQAGSRARLK 218
+ +F RT LL G+KP++V +GK P LK + KR + + ++AG++ ++
Sbjct: 99 QGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIE 158
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I+ E P I E + K +AID S I D + S
Sbjct: 1 MGIKQLFQIVK---EEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDS 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWIC---------DSSTIAEH 99
MG+K L +L+ E P I + +AID S + D +
Sbjct: 1 MGIKGLAQVLS---EHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNE 57
Query: 100 SSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP FV +GK P LK + KR
Sbjct: 58 QGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKR 101
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+F+RT ++ G+KP FV +GK P LK + KR
Sbjct: 68 MFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKR 101
>gi|301103478|ref|XP_002900825.1| exonuclease 1, putative [Phytophthora infestans T30-4]
gi|262101580|gb|EEY59632.1| exonuclease 1, putative [Phytophthora infestans T30-4]
Length = 401
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MG+ L +L I E K I + +T+AID W+ C ++ K Y+
Sbjct: 1 MGISGLLPVLKSITETKNIEAYRGQTLAIDGYCWLHRAIYSCSQEICLGQATDK--YVTY 58
Query: 110 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTS 169
R + LL GV P V +G +K T E+R++++ ++ VQ + R R
Sbjct: 59 FMDRITALLHNGVTPYVVFDGGPLPMKKGTEEERRKSRQKNRELGVQHYNNKRFGEARKC 118
Query: 170 YLLLLGVKP 178
++ V P
Sbjct: 119 FVRAADVSP 127
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 56 MGVKDLWGIL-----TPICERKPIWELQDKTIAIDLSAWICD---------SSTIAEHSS 101
MG+K L +L T +R+ + + + + IA+D S I S + +
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRR-VEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L+ + RT +L G+KP+FV +G+ P +K + KR
Sbjct: 60 EITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKR 101
>gi|401624921|gb|EJS42958.1| rad27p [Saccharomyces arboricola H-6]
Length = 382
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D + + +
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDMKSHELTKR 101
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ G+ + S +F+RT ++ G+KP +V +GK P +K + KR
Sbjct: 47 RQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDMKSHELTKR 101
>gi|83770789|dbj|BAE60922.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870160|gb|EIT79346.1| hypothetical protein Ao3042_04184 [Aspergillus oryzae 3.042]
Length = 708
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
+A+D+S W+ + KN LR LF+R L L V P+FV +G KH
Sbjct: 35 VAVDISIWLFQ---VQAGRGGKNPELRTLFYRLLKFLALPVHPLFVYDG-----KHKPPF 86
Query: 142 KRQQAQGRSAG 152
KR +A G + G
Sbjct: 87 KRGKATGSTYG 97
>gi|327351073|gb|EGE79930.1| XPG family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 838
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDTI 140
+AID+S W+ I N LR LF+R L L V P+FV +G + P K
Sbjct: 35 VAIDISIWLFQ---IQAGKGGTNPELRTLFYRLVRLTGLPVHPLFVYDGPQRPTYK---- 87
Query: 141 EKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKA 186
+G+ GRN G R + R+ YL+ L P G+A
Sbjct: 88 ------RGKLIGRNTGVGDLGR-VIRRSKYLIDLFRFPHHTAPGEA 126
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 51 YLRAIMGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSST 95
Y MG+K L+ I I E P E+++ + +AID S I D
Sbjct: 120 YTLVEMGIKHLYQI---IQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQ 176
Query: 96 IAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + + +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 177 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKR 224
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P +K + KR
Sbjct: 53 TLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
>gi|400597409|gb|EJP65142.1| DNA repair endonuclease rad2 [Beauveria bassiana ARSEF 2860]
Length = 808
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT---------IAIDLSAWICDSSTIAEHSSQKNMY 106
MG+K ++G L P +R + +L T IAID++ W + N
Sbjct: 1 MGIKGIYGELGP-GQRVSLSKLAADTLQAEGRPLRIAIDVAIWQFQAQAA---RGGTNPA 56
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
+R LF+R LL + V+PIFV +G + KR + GR G A S+A+ L
Sbjct: 57 IRTLFYRLVRLLAIPVQPIFVFDG-----PNKPTTKRNKRSGRGDG---VANSQAKRLI 107
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 61 LWGILTPICERKP-------IWELQDKTIAIDLSAWICD--------SSTIAEHSSQKNM 105
+ G+ I ER P I + +AID S I + + +
Sbjct: 3 IHGLAKLIAERAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTS 62
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
+L +F+RT ++ G+KP++V +GK P LK + KR + + A +++Q A
Sbjct: 63 HLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRS-EAEKHLQEAQEA 117
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+F+RT ++ G+KP++V +GK P LK + KR + + A +++Q A
Sbjct: 67 MFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRS-EAEKHLQEAQEA 117
>gi|399217832|emb|CCF74719.1| unnamed protein product [Babesia microti strain RI]
Length = 434
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH--SSQKNMYLRNLF 111
MG+ L L P+ +R I AID WI + ++ ++H YL+ +
Sbjct: 1 MGINKLLPFLKPLSKRVHIKGYSSCVAAIDAMCWIHRALVASASKHLIGEDSIAYLKFIL 60
Query: 112 FRTSYLLLLGVKPIFVLEGKA-PVLKHDTI---EKRQQAQGRSAGRNVQAGSRARNLFFR 167
+ L+L G+ PI V +GK P + + E+RQQA+ A R ++G + F+R
Sbjct: 61 SMLNLLILHGITPIMVFDGKELPAKEQENNKRRERRQQAK-EEALRMYKSGKYDKGEFYR 119
>gi|429963370|gb|ELA42914.1| hypothetical protein VICG_00229 [Vittaforma corneae ATCC 50505]
Length = 358
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI------CDSSTIAEHSSQKNMYLRN 109
MG+K L IL I ++ I + ++ + ID +WI + + +QK++ +
Sbjct: 1 MGIKGLLPILRKILKKTHIGKYSNRRVGIDGHSWIHRIIPYIAADLYCNNPTQKHL---D 57
Query: 110 LFF-RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
LF + S LL G+ PIFV +G K TI++R+Q
Sbjct: 58 LFMAKLSGLLDYGITPIFVFDGDFLESKKKTIQERKQ 94
>gi|345563417|gb|EGX46418.1| hypothetical protein AOL_s00109g176 [Arthrobotrys oligospora ATCC
24927]
Length = 610
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+AID+S W S + S+ N LR +++R LL L + +FV +GK
Sbjct: 35 VAIDISIWAFQSKAVQGRSTGSNAPLRVIYYRLCSLLSLNIHAVFVFDGK 84
>gi|238489679|ref|XP_002376077.1| Rad2-like endonuclease, putative [Aspergillus flavus NRRL3357]
gi|220698465|gb|EED54805.1| Rad2-like endonuclease, putative [Aspergillus flavus NRRL3357]
Length = 879
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
+A+D+S W+ + KN LR LF+R L L V P+FV +G KH
Sbjct: 35 VAVDISIWLFQ---VQAGRGGKNPELRTLFYRLLKFLALPVHPLFVYDG-----KHKPPF 86
Query: 142 KRQQAQGRSAG 152
KR +A G + G
Sbjct: 87 KRGKATGSTYG 97
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 95 TIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
T+ + + +L+ +F RT LL G+KP++V +GK P +K + KR
Sbjct: 53 TLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
>gi|317137497|ref|XP_001727761.2| rad2-like endonuclease [Aspergillus oryzae RIB40]
Length = 879
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
+A+D+S W+ + KN LR LF+R L L V P+FV +G KH
Sbjct: 35 VAVDISIWLFQ---VQAGRGGKNPELRTLFYRLLKFLALPVHPLFVYDG-----KHKPPF 86
Query: 142 KRQQAQGRSAG 152
KR +A G + G
Sbjct: 87 KRGKATGSTYG 97
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P E+++ + +AID S I D + +
Sbjct: 1 MGIKHLYQI---IQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSET 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 58 GETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKR 100
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P E+++ + +AID S I D + +
Sbjct: 1 MGIKHLYQI---IQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSET 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 58 GETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKR 100
>gi|397621116|gb|EJK66115.1| hypothetical protein THAOC_12982 [Thalassiosira oceanica]
Length = 434
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 41/162 (25%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWICDSSTIAEHSSQKNM------ 105
MG+K L +L+ P R+ P+ L + IA+D S I IA S NM
Sbjct: 1 MGIKGLAKLLSDEAPDSIREVPLSSLHGRKIAVDASMAIY-QMLIAIRSGNPNMAATVLT 59
Query: 106 --------YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQ--------- 144
+++ +F RT + G++P++V +GK P K + EKRQ
Sbjct: 60 NADGETTSHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEALKAA 119
Query: 145 ------QAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIF 180
+ Q + R V+AG + R L L+GV PI
Sbjct: 120 EESGDVEEQDKHTKRLVRAGHKENEDIKR--LLTLMGV-PII 158
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWELQ-DKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MGVK L +L P ++ +E + IA+D S I T+ + +
Sbjct: 1 MGVKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P +K + KR
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKR 101
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + + +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 14 EGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKR 65
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 144 QQAQGRS-AGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+QA+G+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 11 RQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKR 65
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P E+++ + +AID S I + +
Sbjct: 1 MGIKQLFTI---IKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSNGEMLTNED 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
Q +L +F+RT ++ G+KP++V +G P LK + +R Q
Sbjct: 58 GQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQ 102
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I + + S
Sbjct: 1 MGIKQLFQI---IKEEAPDAIKESEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLTNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|239607122|gb|EEQ84109.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 816
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDTI 140
+AID+S W+ I N LR LF+R L L V P+FV +G + P K
Sbjct: 35 VAIDISIWLFQ---IQAGKGGTNPELRTLFYRLVRLTGLPVHPLFVYDGPQRPTYK---- 87
Query: 141 EKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKA 186
+G+ GRN G R + R+ YL+ L P G+A
Sbjct: 88 ------RGKLIGRNTGVGDLGR-VIRRSKYLIDLFRFPHHTAPGEA 126
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ + + +L +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 14 EGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKR 65
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 144 QQAQGRS-AGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+QA+G+ + S +F+RT ++ +KP++V +GK PVLK +EKR
Sbjct: 11 RQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKR 65
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLS--------AWICDSSTIAEHSSQ 102
MG+K L+ I+ C + E + KT +AID S A + + +
Sbjct: 1 MGIKGLYPIIKENCP-DAVKEGEIKTQFGRKVAIDASMSLYSFLVAVRSGGEQLMSDTGE 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP++V +G P LK + KR Q + + + +A
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQESHEEA 114
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I + +AID S I + +
Sbjct: 1 MGIKQLFSI---IKENAPDAVKSGEIKNHFGRKVAIDASMSIYSFLIAVRSNGEVLTNED 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
Q +L +F+RT ++ G+KP++V +G P LK + +R Q
Sbjct: 58 GQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQ 102
>gi|440470255|gb|ELQ39332.1| DNA-repair protein rad2 [Magnaporthe oryzae Y34]
gi|440487391|gb|ELQ67182.1| DNA-repair protein rad2 [Magnaporthe oryzae P131]
Length = 416
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P E+++ + +AID S I + +
Sbjct: 1 MGIKQLFTI---IKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAVRSNGEMLTNED 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
Q +L +F+RT ++ G+KP++V +G P LK + +R Q
Sbjct: 58 GQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQ 102
>gi|392575628|gb|EIW68761.1| hypothetical protein TREMEDRAFT_69192 [Tremella mesenterica DSM
1558]
Length = 437
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICER----KPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L +++ R + L + +AID S I D + S
Sbjct: 1 MGIKGLTALISENAPRAMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 VTSHLMGFFYRTIRMVDQGIKPCYIFDGKPPELKGGVLAKR 101
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L P ++ +E + IAID S I + + + +
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L+ +F RT LL G+KP++V +GK P LK + KR
Sbjct: 61 VTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKR 101
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKR 101
>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
gi|317376192|sp|B6JYI7.1|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
Length = 377
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L ++ C I + +AID S + D + +
Sbjct: 1 MGIKGLSQVIADNCPSAVRHNDIKNYFGRKVAIDASMSLYQFLIQVRGQDGQQLMNDQGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L +F+RT ++ G+KP +V +GK P LK + KR Q
Sbjct: 61 TTSHLMGMFYRTLRMVDNGLKPCYVFDGKPPTLKSGELAKRASRQ 105
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 54 AIMGVKDLWGILTP-ICERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I+G+ L + P + + + + +AID S + D + + +
Sbjct: 2 GILGLSKLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSDGAQLTSVHGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L F+RT L+ G+KP++V +GK P LK + KR + + + + +QA A N
Sbjct: 62 SHLMGTFYRTIRLVEQGIKPVYVFDGKPPDLKGGELAKRDERRDETQ-KLLQAAEEAGN 119
>gi|170097587|ref|XP_001880013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645416|gb|EDR09664.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 853
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 56 MGVKDLWGILTPICERKPIWEL-------------QDKTIAIDLSAWICDSSTIAEHSSQ 102
MGV LW IL P + + EL + I ID S W AE+ +
Sbjct: 1 MGVAGLWDILRPAATTRSLTELSVTEGFEANPHGVRGYRIGIDASIWFFH----AEYGRE 56
Query: 103 -KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L+ P+FV +G K P +K
Sbjct: 57 GENPVLRTLFFRCATLMHSPFLPLFVFDGPKRPDVK 92
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I D + +
Sbjct: 1 MGIKQLFQI---IKEEAPDAIKEGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNDT 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-21-C11]
Length = 341
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV D+ +L I E+ + K IAID I + + ++ + +
Sbjct: 1 MGV-DIKALL--IREKTNLESFSSKIIAIDAYNAIYQFLAIIRGPEGLHLTDNRGRVTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
L L +R L +G+KP++V +GK P LK I++R+
Sbjct: 58 LTGLLYRNVNFLSIGIKPVYVFDGKPPSLKTAEIQRRK 95
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMY 106
MG+ DL ++TP + P EL K +AID I +I A + +
Sbjct: 1 MGL-DLKPLVTPASLKLP--ELTGKVVAIDAYNTIYQFLSIIRGPTGEPLANSKGEITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L LF+R + LL +K ++V +GKA LK I++R Q
Sbjct: 58 LSGLFYRNANLLGDNIKLVYVFDGKANELKMAEIQRRSQ 96
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP--IWELQDKT-----IAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I E + K +AID S I + + S
Sbjct: 1 MGIKQLFSI---IKEEAPDSIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLMNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IA+D S I + + + + +L+ +F RT LL G+KP++V +G
Sbjct: 29 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K P +K+ ++KR
Sbjct: 89 KPPEMKNQELKKR 101
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K+ ++KR
Sbjct: 60 EVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKR 101
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICERKPIWELQ-DKTIAIDLSAWI--------CDSSTIAEHSSQK 103
MG+K L+ I+ P ++ + Q + +AID S I D + + +
Sbjct: 1 MGIKQLFSIIKDEAPAAIKEGDIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNEAGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|425778472|gb|EKV16597.1| Flap endonuclease 1 [Penicillium digitatum PHI26]
gi|425784232|gb|EKV22023.1| Flap endonuclease 1 [Penicillium digitatum Pd1]
Length = 395
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P E+++ + +AID S I + + S
Sbjct: 1 MGIKHLYQV---ISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT L+ GV P++V +GK P LK + +E R++ + + + V+A
Sbjct: 10 HLNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKA 61
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 153 RNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG 212
R + S +F+RT L+ GV P++V +GK P LK + +E R++ + + + V+A
Sbjct: 3 RKGRVTSHLNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKAK 62
Query: 213 SRARLKGLQ 221
+L+ ++
Sbjct: 63 ELGKLEEMR 71
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IAID S I + + + + +L+ +F RT LL G+KP++V +G
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K P LK + KR
Sbjct: 89 KPPDLKKQELAKR 101
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
Length = 380
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 66 GMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|341039026|gb|EGS24018.1| nuclease-like protein [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 922
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
+AID++ W I N +R LF+R LL LG+ PIFV +G + I
Sbjct: 35 LAIDMAIWQFQ---IQAARGGSNPAIRTLFYRFVRLLSLGIHPIFVFDG-----PNKPIF 86
Query: 142 KRQQAQGRSAGRNVQAGSRARNLFFRTSY 170
KR + G G + R LF T++
Sbjct: 87 KRNRRSGTGNGVSTAMAKRLIRLFGFTAH 115
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVESGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
P LK + KR + + A +++Q A
Sbjct: 89 PPQLKSGELAKRTERRA-EAEKHLQEAQEA 117
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR-----------QQAQGRSAGRNVQAG 212
+F+RT ++ G+KP++V +GK P LK + KR Q+AQ N++
Sbjct: 67 MFYRTIRMVESGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHLQEAQEAGEENNIEKY 126
Query: 213 SRARLKGLQ 221
S+ +K Q
Sbjct: 127 SKRLVKVTQ 135
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IAID S I + + + + +L+ +F RT LL G+KP++V +G
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K P LK + KR
Sbjct: 89 KPPDLKXQELAKR 101
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKXQELAKR 101
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 67 MFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IA+D S I + + + + +L+ +F RT LL G+KP++V +G
Sbjct: 14 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDG 73
Query: 131 KAPVLKHDTIEKR 143
K P +K+ ++KR
Sbjct: 74 KPPEMKNQELKKR 86
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P +K+ ++KR
Sbjct: 45 EVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKR 86
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 67 MFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P I + +AID S I + + +
Sbjct: 1 MGIKHLYQV---IAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDT 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVL-----------KHDTIEKRQQAQGR 149
+ +L +F+RT ++ G+KP++V +G P L KH+ E ++A+
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKET 117
Query: 150 SAGRNVQAGSR 160
+V+ SR
Sbjct: 118 GTAEDVEKFSR 128
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 KTIAIDLSAWICD--------SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I + + +L +F+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQA 157
P LK + KR + + + + QA
Sbjct: 89 PPQLKSGELAKRSERRAEAEKQLQQA 114
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 67 MFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 114
>gi|119186891|ref|XP_001244052.1| hypothetical protein CIMG_03493 [Coccidioides immitis RS]
Length = 813
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKA-PVLKHDTI 140
IAID+S W+ + N LR LF+R + L+ L V PIFV +G P K +
Sbjct: 84 IAIDVSIWLFQAQAA---QGGLNPELRALFYRLARLISLPVHPIFVFDGSGRPEYKRGKL 140
Query: 141 EKRQQAQGRSAGRNVQAGSRARNLF 165
R GR+ N+++ R LF
Sbjct: 141 VIR---NGRAGAWNIRSSKRLIELF 162
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 56 MGVKDLWGIL-----TPICERKPIWELQDKTIAIDLSAWICD---------SSTIAEHSS 101
MG+K L +L T +R+ + + + + IA+D S I S + +
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRR-VEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L+ + RT +L G+KP+FV +G+ P +K + KR
Sbjct: 60 EITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKR 101
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 54 AIMGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICD--------SSTIAEHSS 101
A MG+ L ++ + I + +AID S I +
Sbjct: 15 ATMGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEG 74
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+ +L +F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 75 ETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 130
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
+F+RT ++ G+KP++V +GK P LK + KR + + + + QA
Sbjct: 82 GMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQA 130
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 54 AIMGVKDLWGILTP-ICERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKN 104
I G+ + G P + I + +AID S I + + + +
Sbjct: 2 GIQGLSKVIGDYAPSAVKENEIKNFFGRKVAIDASMCIYQFLIAVRQEGNMLTNADGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP++V +GK P +K + KR AGR +A
Sbjct: 62 SHLMGIFYRTLRMIDHGIKPVYVFDGKPPDMKSGELSKR-------AGRREEA 107
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ I I E P I + +AID S I + + S
Sbjct: 1 MGIKHLFQI---IKEEAPDAIKEGDIKAHFGRKVAIDASMSIYSFLIAVRSEGQQLTNES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ +L LF+RT ++ G+KP++V +G P LK + KR Q
Sbjct: 58 GETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQ 102
>gi|255945091|ref|XP_002563313.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|317374920|sp|B6HEM2.1|FEN1_PENCW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|211588048|emb|CAP86119.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P E+++ + +AID S I + + S
Sbjct: 1 MGIKHLYQV---ISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSES 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 58 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKR 100
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L LF+RT LL GV PI+V +GK P +K +E R++
Sbjct: 10 HLNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRK 49
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
S LF+RT LL GV PI+V +GK P +K +E R++
Sbjct: 9 SHLNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRK 49
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 19/111 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P E+++ + +AID S I D + +
Sbjct: 1 MGIKHLYQV---ISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMSDA 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
+ +L +F+RT ++ G+KP++V +G P LK + KR A+ R A
Sbjct: 58 GETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKR-SARKREA 107
>gi|242781940|ref|XP_002479901.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218720048|gb|EED19467.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 883
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 71 RKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
R+PI IA+D+S W+ + +N LR LFFR LL L V P+FV +G
Sbjct: 46 RRPI------RIAVDISIWLFQ---LQAGRGGQNPELRTLFFRLVRLLALPVHPLFVYDG 96
Query: 131 KAPVLKHDTIEKRQQAQGRSAG 152
K + ++ + GRS G
Sbjct: 97 K----QKPPFKRGKATTGRSYG 114
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 56 MGVKDLWGILTPICE----RKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L ++ + + I L + +AID S I D + + +
Sbjct: 1 MGIKGLTALINDLAPDAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+L F+RT + G+KP +V +GK P LK + KR
Sbjct: 61 TTSHLMGFFYRTIRMAENGIKPAYVFDGKPPQLKSGVLAKR 101
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 56 MGVKDLWGILTPICERKP----IWELQD---KTIAIDLSAWI--------CDSSTIAEHS 100
MG+K L+ + I E P E+++ + +AID S I D + +
Sbjct: 1 MGIKHLYQV---IQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLVAVRSDGQQLMSET 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L +F+RT ++ G+KP++V +G P LK + KR
Sbjct: 58 GETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKR 100
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLS--------AWICDSSTIAEHSSQ 102
MG+K L+ ++ C + E + KT +AID S A + + +
Sbjct: 1 MGIKSLYQVIRENCP-DAVKEGEIKTQFGRKVAIDASMSLYSFLIAVRSGGEQLMSDTGE 59
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 157
+L +F+RT ++ G+KP++V +G P LK + KR Q + + ++ +A
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQEQHEEA 114
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 80 KTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEG 130
+ IAID S I + + + + +L+ +F RT LL G+KP++V +G
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDG 88
Query: 131 KAPVLKHDTIEKR 143
K P LK + KR
Sbjct: 89 KPPDLKKQELAKR 101
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
+ S + +F RT LL G+KP++V +GK P LK + KR
Sbjct: 60 EVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR 101
>gi|295671342|ref|XP_002796218.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284351|gb|EEH39917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 593
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 82 IAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIE 141
IAID+S W+ + N LR LF+R L V P+FV +G +
Sbjct: 60 IAIDISIWLFQAQA---GKGGTNPELRTLFYRLVRLKGFPVHPLFVYDGP---------Q 107
Query: 142 KRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKA 186
+ Q +G+ RN AG AR + R+ L+ L P + G+A
Sbjct: 108 RPQYKRGKLVSRNYGAGDLAR-IIRRSKDLIQLFRFPFHIAPGEA 151
>gi|407042604|gb|EKE41429.1| exonuclease, putative [Entamoeba nuttalli P19]
Length = 497
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNL--FFR 113
MG+ L GI+ +C ++ + EL+ +AID AW+ +S +N+ L F
Sbjct: 1 MGITGLKGIVNTVCRKRTLKELKGIRVAIDGYAWLHRASASCSEELCENIPTNGLSSFCV 60
Query: 114 TSYLLLLG--VKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
L LL + PIFV +G K T RQQ + +
Sbjct: 61 KGALTLLNNEITPIFVFDGARLPSKITTENDRQQKRNEN 99
>gi|449544097|gb|EMD35071.1| hypothetical protein CERSUDRAFT_96986 [Ceriporiopsis subvermispora
B]
Length = 949
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 56 MGVKDLWGILTPICERKPIWEL-------------QDKTIAIDLSAWICDSSTIAEHSSQ 102
MGV LW +L P E + + L + + ID S W ++ E
Sbjct: 1 MGVPGLWEVLRPAGETRSLTHLAVVDGFEANPAGARGFRVGIDASIWFFHATYGRE---G 57
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEG-KAPVLK 136
+N LR LFFR + L+ + P+FV +G K P K
Sbjct: 58 ENPELRTLFFRCTRLMSMPFLPLFVFDGPKRPEFK 92
>gi|253758289|ref|XP_002488877.1| hypothetical protein SORBIDRAFT_2740s002010 [Sorghum bicolor]
gi|241947300|gb|EES20445.1| hypothetical protein SORBIDRAFT_2740s002010 [Sorghum bicolor]
Length = 233
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 61 LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ--KNMYLRNLFFRTSYLL 118
LW +L P+ R + L K +A+D S W+ + + +S+ ++ +L R LL
Sbjct: 88 LWELLAPVGRRVSVETLAGKRVAMDASIWMVQFMRVWDDNSKMVEDAHLLGFHRRICKLL 147
Query: 119 LLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L V P+FV LK T ++
Sbjct: 148 FLHVCPVFVFVAATSALKCHTFAAHRR 174
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,327,479,228
Number of Sequences: 23463169
Number of extensions: 124731164
Number of successful extensions: 238395
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 235210
Number of HSP's gapped (non-prelim): 2996
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)