BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12967
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VRJ0|GEN_DROME Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1
Length = 726
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>sp|Q29FC1|GEN_DROPS Flap endonuclease GEN OS=Drosophila pseudoobscura pseudoobscura
GN=Gen PE=3 SV=1
Length = 754
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ-----KNMYLRAI 55
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ KN++ R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 155 VQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
V +NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 46 VHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q++ S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKS 100
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q++ S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHFKSV 113
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P+LK D I KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSV 113
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 70.9 bits (172), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI + E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLF 165
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKLL 110
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI---CDSSTIAEHSSQKNMYLRNLFF 112
MGV LW IL P+ + L +K +AID S WI + E + K+ ++ F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP LK TI+KRQ
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQ 92
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD--SSTIAEHSSQKNMYLRNLFFR 113
MGVK+LW IL ++ P+ LQ+K + +DLS W+ S+ + ++ +YL+NLF R
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSR 160
LL L +FV +G P LK T +R + +A + Q S
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSH 107
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus
laevis GN=ercc5 PE=2 SV=1
Length = 1196
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNL 110
MGV+ LW +L C +PI L+ K +A+D+S W+ + A + ++ +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
F R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 206
LF R LL ++PIFV +G+AP+LK T+ KR+Q +++
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASN 100
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRNLFFR 113
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR F R
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG---SRARNL 164
L+ L I V +G P +K T ++R +A+ A V+ S RN+
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNM 114
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRAIM 56
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFF 58
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQ---KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQK-----NMYLRNL 110
MGV+ LW +L P+ R + L +K +AID S W+ I +K N +L
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMV--QFIKAMRDEKGDMVQNAHLIGF 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 149
F R LL L KPIFV +G P LK T+ +R+ AQ +
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTK 101
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQGR 203
F R LL L KPIFV +G P LK T+ +R+ AQ +
Sbjct: 58 FFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTK 101
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS--STIAEH-SSQKNMYLRNLFF 112
MGV+ LW +L + L+ K +A+D+S W+ + H +S +N +L LF
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 58 LFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>sp|A8J2Z9|FEN1_CHLRE Flap endonuclease 1 OS=Chlamydomonas reinhardtii GN=FEN1 PE=3 SV=1
Length = 396
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 54 AIMGVKDLWGILTPICERKPIWE-LQDKTIAIDLSAWICD---------SSTIAEHSSQK 103
I G+ L G P C ++ +E L + +A+D S I + + +
Sbjct: 2 GIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGEI 61
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L+ +FFRT+ +L G+KP++V +GK P LK D + +R +
Sbjct: 62 TSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTE 103
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S + +FFRT+ +L G+KP++V +GK P LK D + +R + R A N +A +A+
Sbjct: 63 SHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTE---RRADAN-EALEKAKEA 118
Query: 219 GLQ 221
G Q
Sbjct: 119 GDQ 121
>sp|Q0W6I0|FEN_UNCMA Flap endonuclease 1 OS=Uncultured methanogenic archaeon RC-I GN=fen
PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
MGV DL G++ P + EL ++T+A+D + D + +A+ +
Sbjct: 1 MGV-DLGGLVEP--REIELKELNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV 155
L + +R + L+ G+KP+FV +GK P K +TI+ R A+ R A R +
Sbjct: 58 LSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKAR--AEVREAARQM 104
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ A S + +R + L+ G+KP+FV +GK P K +TI+ R A+
Sbjct: 40 RQQDGAPLADDRGNVTSHLSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKAR--AEV 97
Query: 203 RSAGRNV 209
R A R +
Sbjct: 98 REAARQM 104
>sp|C1E3X9|FEN1_MICSR Flap endonuclease 1 OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=FEN1 PE=3 SV=1
Length = 384
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILT---PICERKPIWE-LQDKTIAIDLSAWICDSSTIAEHSSQKNM------ 105
MG+K L +L+ P C R+ +E D+ +AID S I + S ++ +
Sbjct: 1 MGIKGLTKLLSDYAPGCMREQKFEGYLDRKVAIDASMHIYQFMMVVGRSGEQQLTNEAGE 60
Query: 106 ---YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 61 VTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRK 102
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 148 GRSAGRNV--QAG---SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
GRS + + +AG S + +F RT +L G+KP++V +GK P +K + KR+
Sbjct: 47 GRSGEQQLTNEAGEVTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRK 102
>sp|B0E412|FEN12_LACBS Flap endonuclease 1-B OS=Laccaria bicolor (strain S238N-H82 / ATCC
MYA-4686) GN=FEN12 PE=3 SV=1
Length = 469
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 56 MGVKDLWGILTPICER--KPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKN 104
MG+K L G+L+ + K I L + +AID S I D + + +
Sbjct: 1 MGIKGLTGLLSQHAPKAIKEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETT 60
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
YL LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 61 RYLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 99
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 65 GLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 99
>sp|A1RWY2|FEN_THEPD Flap endonuclease 1 OS=Thermofilum pendens (strain Hrk 5) GN=fen
PE=3 SV=1
Length = 346
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMY 106
MGV D+ ++ P+ + + K IAID L ++ D + + + +
Sbjct: 1 MGV-DIKELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSH 59
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 161
L LF+RT + LG+KP++V +G+ P LK +E+R Q + + + +A R
Sbjct: 60 LNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERG 114
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT + LG+KP++V +G+ P LK +E+R Q + + + +A R L+
Sbjct: 58 SHLNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLE 117
>sp|B8GIA0|FEN_METPE Flap endonuclease 1 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=fen PE=3 SV=1
Length = 333
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 75 WELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPI 125
WE T AID + + D + + + +L +FFRT L G++P+
Sbjct: 18 WETLAGTAAIDGNNALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFFRTLRFLEKGIRPV 77
Query: 126 FVLEGKAPVLKHDTIEKRQQAQGRSAG 152
++ +GK P LK +TIE R++ + R AG
Sbjct: 78 YIFDGKPPALKQETIESRREVR-REAG 103
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 206
S +FFRT L G++P+++ +GK P LK +TIE R++ + R AG
Sbjct: 57 SHLSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVR-REAG 103
>sp|Q54NU0|FEN1_DICDI Flap endonuclease 1 OS=Dictyostelium discoideum GN=repG PE=3 SV=1
Length = 384
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 93 SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
SS + + +L+ +F+RT L+ G+KPI+V +G APVLK + KR QA+ + A
Sbjct: 51 SSALTNQLGETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKR-QARRKEAK 109
Query: 153 RNVQAGSRA 161
N++ +
Sbjct: 110 ENLKEATEV 118
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRA 215
+ S + +F+RT L+ G+KPI+V +G APVLK + KR QA+ + A N++ +
Sbjct: 60 ETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKR-QARRKEAKENLKEATEV 118
>sp|B0UXL7|FEN1B_DANRE Probable flap endonuclease 1 homolog OS=Danio rerio
GN=si:dkeyp-13a3.3 PE=2 SV=1
Length = 350
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 72 KPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
K I + K IA+D S + + A K L LF+RT L +KP+FVL+GK
Sbjct: 21 KEIGDYSGKIIALDTSI-VVNQFRSALPGHLKLSPLAGLFYRTLAFLEHDIKPVFVLDGK 79
Query: 132 APVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVL 189
P K +EKR Q+ G S+ ++ GS R L L+GV P G+A L
Sbjct: 80 PPHQKRAVLEKRAQSTGWSSSQSPNTGSAFNQECLR--LLHLMGV-PCIKAPGEAEAL 134
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
LF+RT L +KP+FVL+GK P K +EKR Q+ G S+ ++ GS
Sbjct: 58 LFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGS 107
>sp|A3MY15|FEN_PYRCJ Flap endonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=fen PE=3 SV=1
Length = 346
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L K +A+D L ++ D + + + + +
Sbjct: 1 MGVTELGKLIGKEARREIKLESLAGKCVALDAYNALYQFLASIRQPDGTPLMDRAGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS---------AGRNVQ 156
+L LF+RT LL GVKP++V +GK P K IE+R++A+ ++ GR
Sbjct: 61 HLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRRED 120
Query: 157 AGSRARNLFFRTSYLL 172
A+ F TS ++
Sbjct: 121 VAKYAKRAIFLTSEMV 136
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S LF+RT LL GVKP++V +GK P K IE+R++A+ ++
Sbjct: 60 SHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKA 105
>sp|Q2FNC9|FEN_METHJ Flap endonuclease 1 OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=fen PE=3 SV=1
Length = 333
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + S + +L +FFRT+ L G++P+F+ +GK+P +K TI++R+ + S
Sbjct: 44 DGTPLMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREES 102
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S +FFRT+ L G++P+F+ +GK+P +K TI++R+ + S + QA L
Sbjct: 57 SHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLA 116
Query: 219 G 219
G
Sbjct: 117 G 117
>sp|A9VB27|FEN1_MONBE Flap endonuclease 1 OS=Monosiga brevicollis GN=FEN1 PE=3 SV=1
Length = 368
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 56 MGVKDLWGILTPICERKP-------IWELQDKTIAIDLSAWI--------CDSSTIAEHS 100
MG+ DL + I ++ P I L D+ +AID S I + S + +
Sbjct: 1 MGIHDLSKV---IADKAPDAIKETEIKNLFDRKVAIDASMSIYQFLIAIRSEGSNLVNEA 57
Query: 101 SQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 159
+ +L LF+RT ++ G+KP++V +GK P +K + KR A+ + A N++ +
Sbjct: 58 GEATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKR-GARRKEAQANLEEAT 115
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 149 RSAGRNV-----QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
RS G N+ +A S LF+RT ++ G+KP++V +GK P +K + KR A+ +
Sbjct: 47 RSEGSNLVNEAGEATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKR-GARRK 105
Query: 204 SAGRNVQAGS 213
A N++ +
Sbjct: 106 EAQANLEEAT 115
>sp|A8M9L3|FEN_CALMQ Flap endonuclease 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=fen PE=3
SV=1
Length = 350
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 56 MGVKDLWGILTP--ICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKN 104
MGV +L G L P + R + +L K IA+D L ++ D + + + +
Sbjct: 1 MGVTEL-GKLIPDNLRRRVSLEQLNGKLIALDAYNALYQFLASIRQPDGTPLMDSQGRVT 59
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA---------GRNV 155
+L L +RT LL G+KP++V +GK P LK IEKR++ + ++ G+
Sbjct: 60 SHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKKS 119
Query: 156 QAGSRARNLFFRTSYLL 172
+A A+ F TS ++
Sbjct: 120 EARKYAQRALFITSDMV 136
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT LL G+KP++V +GK P LK IEKR++ + ++
Sbjct: 60 SHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKA 105
>sp|A7RRJ0|FEN1_NEMVE Flap endonuclease 1 OS=Nematostella vectensis GN=FEN1 PE=3 SV=1
Length = 377
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 54 AIMGVKDLWGILTPI-CERKPIWELQDKTIAIDLSAWI--------CDSSTIAEHSSQKN 104
I G+ L G + P + I + IAID S I D S + + +
Sbjct: 2 GIQGLAKLLGDIAPSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEAGETT 61
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 147
+L LF+RT ++ G+KP++V +GK P LK + E+R++AQ
Sbjct: 62 SHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQ 108
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTI----EKRQQAQ 201
LF+RT ++ G+KP++V +GK P LK + E+R++AQ
Sbjct: 67 LFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQ 108
>sp|Q9V0P9|FEN_PYRAB Flap endonuclease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=fen PE=3 SV=1
Length = 343
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 66 TPICERKPIWELQ-----DKTIAID-LSAWICDSSTIAEHSSQKNM--------YLRNLF 111
PI E P E++ K IAID L+A STI + M +L LF
Sbjct: 3 VPIGELIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62
Query: 112 FRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 63 YRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAR 98
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
S LF+RT L+ G+KP++V +GK P K +EKR++A+
Sbjct: 56 SHLSGLFYRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAR 98
>sp|Q2NFD4|FEN_METST Flap endonuclease 1 OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=fen PE=3 SV=1
Length = 328
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 56 MGVKDLWGILTPICERKPIW--ELQDKTIAIDLSAWI---------CDSSTIAEHSSQKN 104
MGVK I +PI EL+ K + +D S I D + + + +
Sbjct: 1 MGVK-----FKDITNPEPIEMKELEGKILTVDASNVIYKFLSSMRQTDGTPLRDLNGHIT 55
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS----- 159
+L + F+TS L+ +KP++V +GKAP LK +T E+R + S + ++A
Sbjct: 56 SHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGDVV 115
Query: 160 RARNLFFRTSYL 171
AR RT++L
Sbjct: 116 AARKYAARTTHL 127
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQA 211
N S + F+TS L+ +KP++V +GKAP LK +T E+R + S + ++A
Sbjct: 51 NGHITSHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEA 108
>sp|C5DGG4|FEN1_LACTC Flap endonuclease 1 OS=Lachancea thermotolerans (strain ATCC 56472
/ CBS 6340 / NRRL Y-8284) GN=FEN1 PE=3 SV=1
Length = 385
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERK-PIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I++ P RK I + +AID S + D +A S +
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSEIKNFFGRKVAIDASMSLYQFLIAVRQQDGVQLASESGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK + KR + + + +A A
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRSARRATTEEKLKEAVEEAE 120
Query: 163 NL 164
L
Sbjct: 121 KL 122
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
RQQ + A + + S +F+RT ++ G+KP +V +GK PVLK + KR
Sbjct: 47 RQQDGVQLASESGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKR 101
>sp|Q6C116|FEN1_YARLI Flap endonuclease 1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=FEN1 PE=3 SV=1
Length = 389
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L C I + +AID S + D + + +
Sbjct: 1 MGIKGLNKLLMEHCPAALRSSEIKNFGGRKVAIDASMSLYQFVIAVRQADGQQLTNENGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK PVLK + KR++
Sbjct: 61 TTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKE 103
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 144 QQAQGRS-AGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+QA G+ N + S +F+RT ++ G+KP++V +GK PVLK + KR++
Sbjct: 47 RQADGQQLTNENGETTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKE 103
>sp|Q6FM28|FEN1_CANGA Flap endonuclease 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FEN1 PE=3 SV=1
Length = 381
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 56 MGVKDLWGILT---PICERKP-IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG+K L I+T P RK I + +AID S + D ++ + +
Sbjct: 1 MGIKGLNSIITEHVPSAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLSTETGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 162
+L +F+RT ++ G+KP +V +GK PVLK ++KR + + + +A A
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRREETEKKLAEATEEAE 120
Query: 163 NL 164
+
Sbjct: 121 KM 122
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 143 RQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQG 202
RQQ G+ + + S +F+RT ++ G+KP +V +GK PVLK ++KR +
Sbjct: 47 RQQDGGQLSTETGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRRE 106
Query: 203 RSAGRNVQAGSRA 215
+ + +A A
Sbjct: 107 ETEKKLAEATEEA 119
>sp|Q97B98|FEN_THEVO Flap endonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=fen PE=3
SV=1
Length = 335
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + S +L +F+RT L+ G+KPIFV +GK LK+ T+E RQ A+ ++
Sbjct: 43 DGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAK 102
Query: 152 GRNVQAGSRA----RNLFFRTSYL 171
+A SR + + R +Y+
Sbjct: 103 AELEEAISRGEENLKQYYSRINYI 126
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S +F+RT L+ G+KPIFV +GK LK+ T+E RQ A+ ++ +A SR
Sbjct: 56 SHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRGE 113
>sp|Q12UT1|FEN_METBU Flap endonuclease 1 OS=Methanococcoides burtonii (strain DSM 6242)
GN=fen PE=3 SV=1
Length = 338
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 74 IWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124
I L +K +AID + D + + + Q +L + +R + L+ GVKP
Sbjct: 16 IAGLSNKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKP 75
Query: 125 IFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
IFV +GK P K DT+ KR + + + +
Sbjct: 76 IFVFDGKPPDFKSDTLAKRHEVRESATAK 104
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
Q S + +R + L+ GVKPIFV +GK P K DT+ KR + + + +
Sbjct: 53 QITSHLSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAK 104
>sp|Q013G9|FEN1_OSTTA Flap endonuclease 1 OS=Ostreococcus tauri GN=FEN1 PE=3 SV=2
Length = 389
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 56 MGVKDLWGILT---PICERKPIW-ELQDKTIAIDLSAWI---------CDSSTIAEHSSQ 102
MG+K L +L+ P R+ + D+ +AID S I T+ + +
Sbjct: 1 MGIKGLTALLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
+L+ + RTS +L G+KP++V +GK P +K + KR+
Sbjct: 61 VTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
S + + RTS +L G+KP++V +GK P +K + KR+
Sbjct: 63 SHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRK 102
>sp|A3FPN7|FEN1_CRYPI Flap endonuclease 1 OS=Cryptosporidium parvum (strain Iowa II)
GN=FEN1 PE=3 SV=1
Length = 490
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDS----------STIAEHSS 101
MG+K L L +++ I L K +AID S WI + S
Sbjct: 1 MGIKGLTKFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAIREGSQWGNLTNSSG 60
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+ ++ + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 61 ESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 104
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 156 QAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
++ S + RT+ LL G+KP+FV +G P +K D + KR +
Sbjct: 61 ESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDE 104
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNM-YLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ S+ I S + +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLK 85
>sp|D3BN56|FEN1_POLPA Flap endonuclease 1 OS=Polysphondylium pallidum GN=repG PE=3 SV=1
Length = 388
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARN 163
+L+ +F+RT L+ G+KPI+V +GKAPVLK + KR A+ + A + ++ + N
Sbjct: 64 HLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKR-YARRKEAEQQLEEANEVGN 120
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
N + S + +F+RT L+ G+KPI+V +GKAPVLK + KR
Sbjct: 58 NGETTSHLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKR 101
>sp|A8QCH0|FEN1_BRUMA Flap endonuclease 1 OS=Brugia malayi GN=FEN1 PE=3 SV=1
Length = 378
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQK 103
MGVKDL ++ +P R K + +A+D S + D S + S +
Sbjct: 1 MGVKDLSKVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQTESGET 60
Query: 104 NMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
+L +F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 61 TSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTE 102
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
+F+RT ++ G+KP++V +GK P +K +EKR +
Sbjct: 67 MFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTE 102
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 56 MGVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQ 102
MG++ L ++ + ++ I +K IAID S + D + +A S +
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 103 KNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
+L L + L G+KPIFV +GK P K +EKR+QA+
Sbjct: 61 VTSHLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAR 105
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 175 GVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
G+KPIFV +GK P K +EKR+QA+
Sbjct: 79 GIKPIFVFDGKPPEDKQGELEKRRQAR 105
>sp|Q6TNU4|FEN1A_DANRE Flap endonuclease 1 OS=Danio rerio GN=fen1 PE=2 SV=1
Length = 380
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKR 100
>sp|A4WNC4|FEN_PYRAR Flap endonuclease 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 /
JCM 11321) GN=fen PE=3 SV=1
Length = 346
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
D + + + + + ++ LF+RT L+ G+KP++V +GK P K IE+R++A+ ++
Sbjct: 47 DGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKAT 106
Query: 152 GRNVQAGSRAR 162
V+A R
Sbjct: 107 EELVRAIKEGR 117
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRAR 216
S LF+RT L+ G+KP++V +GK P K IE+R++A+ ++ V+A R
Sbjct: 60 SHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGR 117
>sp|C1BM18|FEN1_OSMMO Flap endonuclease 1 OS=Osmerus mordax GN=fen1 PE=2 SV=1
Length = 380
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSGELEKR 100
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSGELEKR 100
>sp|Q8ZYN2|FEN_PYRAE Flap endonuclease 1 OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=fen PE=3
SV=1
Length = 346
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 56 MGVKDLWGILTPICERKPIWE-LQDKTIAID----LSAWIC-----DSSTIAEHSSQKNM 105
MGV +L ++ R+ E L K IA+D L ++ D + + + + +
Sbjct: 1 MGVTELGKLIGKEVRREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGRITS 60
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS---------AGRNVQ 156
+L LF+RT LL G++P++V +GK P K IE+R++ + ++ GR
Sbjct: 61 HLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRRED 120
Query: 157 AGSRARNLFFRTSYLL 172
A+ F TS ++
Sbjct: 121 VAKYAKRAVFITSEMV 136
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG---RNVQAGSR 214
S LF+RT LL G++P++V +GK P K IE+R++ + ++ R ++ G R
Sbjct: 60 SHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRR 118
>sp|Q46D63|FEN_METBF Flap endonuclease 1 OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=fen PE=3 SV=1
Length = 338
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D + + + +L L +RT+ L+ +G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 43 DGNPLVNSRGKVTSHLSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESS 101
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT+ L+ +G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 56 SHLSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESS 101
>sp|A9A4B0|FEN_NITMS Flap endonuclease 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=fen PE=3 SV=1
Length = 340
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMY 106
+ +KDL + E+ + +K IAID I D +++ + +
Sbjct: 3 LNLKDLV-----VREKTTLEAFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSH 57
Query: 107 LRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
L L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 58 LSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
L +R L LG+KP++V +GK P LK IE+R+Q
Sbjct: 61 LLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQ 96
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRT 114
MGV + W +L P +++ L++K +A+DLS WI T + K +LR FFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKP-HLRLTFFRT 59
Query: 115 SYLLL-LGVKPIFVLEGKAPVLK 136
L G P+FV++G LK
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLK 82
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 1 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICDSST 40
MGV + W +L P +++ L++K +A+DLS WI T
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHET 41
>sp|Q8TIY5|FEN_METAC Flap endonuclease 1 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=fen PE=3 SV=1
Length = 338
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 92 DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 150
D S + + +L L +RT+ L+ G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 43 DGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETS 101
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRS 204
S L +RT+ L+ G+KP+F+ +GK P LK +T+ +R++ + S
Sbjct: 56 SHLSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETS 101
>sp|B3RVF0|FEN1_TRIAD Flap endonuclease 1 OS=Trichoplax adhaerens GN=FEN1 PE=3 SV=1
Length = 377
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 80 KTIAIDLSAWI--------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ +AID S I D + + + + +L LF+RT ++ G+KP++V +GK
Sbjct: 29 RKVAIDASMSIYQFLIAVRSDGNVLTNEAGETTSHLMGLFYRTIRMMENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKRQQ 145
P LK + +RQ+
Sbjct: 89 PPRLKSGELARRQE 102
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 164 LFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
LF+RT ++ G+KP++V +GK P LK + +RQ+
Sbjct: 67 LFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQE 102
>sp|Q5I4H3|FEN1_XIPMA Flap endonuclease 1 OS=Xiphophorus maculatus GN=fen1 PE=2 SV=1
Length = 380
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 80 KTIAIDLSAWIC--------DSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGK 131
+ IAID S I D + + + +L +F+RT +L G+KP++V +GK
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQSEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGK 88
Query: 132 APVLKHDTIEKR 143
P LK +EKR
Sbjct: 89 PPQLKSAELEKR 100
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S +F+RT +L G+KP++V +GK P LK +EKR
Sbjct: 62 SHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSAELEKR 100
>sp|B0DSN9|FEN11_LACBS Flap endonuclease 1-A OS=Laccaria bicolor (strain S238N-H82 / ATCC
MYA-4686) GN=FEN11 PE=3 SV=1
Length = 394
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKT-----IAIDLSAWIC---------DSSTIAEHSS 101
MG+K L G+L+ K I E + KT +AID S I D + +
Sbjct: 1 MGIKGLTGLLSQHAP-KAIQEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAG 59
Query: 102 QKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 143
+ +L LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 60 ETTSHLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 101
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKR 197
S LF+RT ++ G+KP ++ +GK P LK + KR
Sbjct: 63 SHLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKR 101
>sp|Q980U8|FEN_SULSO Flap endonuclease 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=fen PE=1 SV=2
Length = 349
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 60 DLWGILTPICERKPIWELQDKTIAID----LSAWIC-----DSSTIAEHSSQKNMYLRNL 110
DL ++ + EL+ K ++ID L ++ D + + + + +L L
Sbjct: 2 DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGL 61
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSY 170
F+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S + R
Sbjct: 62 FYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYS 121
Query: 171 LLLLGVKPIFVLEGK 185
+L + I V E K
Sbjct: 122 QAILRLSNIMVEESK 136
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 159 SRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLK 218
S LF+RT +L GV PI+V +GK P K + +E+R++A+ + + +A S +++
Sbjct: 56 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIE 115
Query: 219 GLQ 221
L+
Sbjct: 116 ELR 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,159,472
Number of Sequences: 539616
Number of extensions: 2938696
Number of successful extensions: 6732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6289
Number of HSP's gapped (non-prelim): 443
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)