Query psy12967
Match_columns 222
No_of_seqs 224 out of 1037
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 15:43:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe9_Y Exonuclease 1; exonucle 100.0 7.6E-36 2.6E-40 269.8 12.5 156 56-221 1-180 (352)
2 3ory_A Flap endonuclease 1; hy 100.0 2.9E-32 9.9E-37 247.3 10.3 156 55-221 10-196 (363)
3 3q8k_A Flap endonuclease 1; he 100.0 8.9E-31 3E-35 235.8 10.0 155 57-221 1-187 (341)
4 1b43_A Protein (FEN-1); nuclea 100.0 2.6E-31 8.9E-36 238.8 6.3 153 56-221 1-182 (340)
5 1a76_A Flap endonuclease-1 pro 100.0 2.7E-30 9.1E-35 231.0 8.0 153 56-221 1-182 (326)
6 1rxw_A Flap structure-specific 100.0 1.4E-29 4.9E-34 227.2 12.4 153 56-221 1-181 (336)
7 1ul1_X Flap endonuclease-1; pr 100.0 9.8E-30 3.3E-34 231.8 5.9 155 57-221 1-187 (379)
8 2izo_A FEN1, flap structure-sp 99.9 1.4E-27 4.7E-32 215.1 8.2 149 63-221 2-179 (346)
9 1bgx_T TAQ DNA polymerase; DNA 99.6 4.2E-16 1.4E-20 154.0 0.9 135 71-221 4-151 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 99.4 6.9E-14 2.4E-18 123.1 5.7 145 59-221 2-161 (290)
11 3qe9_Y Exonuclease 1; exonucle 99.0 2.2E-11 7.5E-16 109.8 -1.9 42 1-42 1-42 (352)
12 3ory_A Flap endonuclease 1; hy 98.4 4.6E-08 1.6E-12 88.4 0.7 41 1-42 11-53 (363)
13 1b43_A Protein (FEN-1); nuclea 98.2 1.4E-07 4.9E-12 84.1 0.2 39 1-42 1-39 (340)
14 1a76_A Flap endonuclease-1 pro 98.2 2.8E-07 9.6E-12 81.8 0.3 39 1-42 1-39 (326)
15 1rxw_A Flap structure-specific 98.1 3.9E-07 1.3E-11 81.2 0.3 39 1-42 1-39 (336)
16 3q8k_A Flap endonuclease 1; he 98.1 3.1E-07 1.1E-11 82.2 -0.6 41 2-42 1-45 (341)
17 1ul1_X Flap endonuclease-1; pr 97.9 1.6E-06 5.3E-11 78.7 0.2 41 2-42 1-45 (379)
18 3h7i_A Ribonuclease H, RNAse H 96.7 0.0049 1.7E-07 54.2 7.8 124 80-216 14-159 (305)
19 2izo_A FEN1, flap structure-sp 96.0 0.00069 2.4E-08 60.4 -1.6 35 8-42 2-36 (346)
20 3pie_A 5'->3' exoribonuclease 86.8 0.54 1.8E-05 47.9 4.5 89 56-147 1-104 (1155)
21 2y35_A LD22664P; hydrolase-DNA 86.5 0.41 1.4E-05 48.9 3.5 90 56-147 1-104 (1140)
22 1bgx_T TAQ DNA polymerase; DNA 66.4 0.99 3.4E-05 44.6 -0.6 27 16-42 4-30 (832)
23 3fqd_A Protein DHP1, 5'-3' exo 61.8 4.8 0.00016 40.0 3.2 64 82-146 55-124 (899)
24 1exn_A 5'-exonuclease, 5'-nucl 25.0 12 0.00043 32.1 -0.6 34 4-40 2-35 (290)
25 2nxo_A Hypothetical protein SC 22.1 36 0.0012 28.1 1.8 15 17-31 94-108 (291)
No 1
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=7.6e-36 Score=269.81 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=133.0
Q ss_pred hccccccccccccceeeccccccCcEEEeecchhhhhhhhhh---hhcCCchHHHHHHHHHHHHH-HhcCCeeEEEeeCC
Q psy12967 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFFRTSYL-LLLGVKPIFVLEGK 131 (222)
Q Consensus 56 MGI~gL~~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~~---~~~~~~~~~l~~~f~R~~~L-l~~gI~PIfVFDG~ 131 (222)
|||+|||++|++..+++++++|+|++||||+|+||||+...+ ...|++|+|+.++|+|.+++ +++||+|||||||.
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~ 80 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGC 80 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHHHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchhhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999975432 24688999999999999875 69999999999999
Q ss_pred CCCCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhHH------------HHHHHhCCceEEEecCCCCccCcccH
Q psy12967 132 APVLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFRT------------SYLLLLGVKPIFVLEGKAPVLKHDTI 194 (222)
Q Consensus 132 ~p~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R~------------~lL~~~GI~p~~vapGeap~l~a~~~ 194 (222)
+|+.|+.|+.+|+++|+++..++.+ +++ +++++|+|+ .+|+++|| |++++||||
T Consensus 81 ~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gI-p~i~ap~EA-------- 151 (352)
T 3qe9_Y 81 TLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGV-DCLVAPYEA-------- 151 (352)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTC-EEEECSSCH--------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC-cEEECCcch--------
Confidence 9999999999999999877665532 232 466666543 38899999 999999876
Q ss_pred HHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 195 EKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 195 ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+.+.|. ++|+|||+|+||+.
T Consensus 152 -DaqiA~La~~g~~~~I~S~D~Dll~~~~~ 180 (352)
T 3qe9_Y 152 -DAQLAYLNKAGIVQAIITEDSALLAFGCK 180 (352)
T ss_dssp -HHHHHHHHHTTSCSEEECSCGGGGGGTCS
T ss_pred -HHHHHHHHHCCCeEEEEeCCcCcccccCC
Confidence 678999999887 68999999999985
No 2
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.97 E-value=2.9e-32 Score=247.27 Aligned_cols=156 Identities=26% Similarity=0.347 Sum_probs=132.1
Q ss_pred hhcccccccccc-ccceee-ccccccCcEEEeecchhhhhhhhh---------hhhcCCchHHHHHHHHHHHHHHhcCCe
Q psy12967 55 IMGVKDLWGILT-PICERK-PIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMYLRNLFFRTSYLLLLGVK 123 (222)
Q Consensus 55 ~MGI~gL~~~l~-~~~~~~-~i~~l~Gk~iAID~s~wl~~~~~~---------~~~~~~~~~~l~~~f~R~~~Ll~~gI~ 123 (222)
.||| |||++|+ ++.+++ ++++|+|+++|||+|+||||+... +++.|.+|+|+.++|+|+++|+++||+
T Consensus 10 ~MGv-~L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~ 88 (363)
T 3ory_A 10 DMGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIK 88 (363)
T ss_dssp CCSC-CCGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCE
T ss_pred ccCc-CHHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 7999 9999999 566888 999999999999999999996432 245688999999999999999999999
Q ss_pred eEEEeeCCCCCCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhH------------HHHHHHhCCceEEEecCCC
Q psy12967 124 PIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFR------------TSYLLLLGVKPIFVLEGKA 186 (222)
Q Consensus 124 PIfVFDG~~p~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R------------~~lL~~~GI~p~~vapGea 186 (222)
|+|||||.+|++|.++..+|++.|+.+.++..+ .|+ ++.++++| ..+|+++|| |++++||||
T Consensus 89 Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GI-p~i~apgEA 167 (363)
T 3ory_A 89 PVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGI-PWVQAPAEG 167 (363)
T ss_dssp EEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTC-CEEECSSCH
T ss_pred cEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCC-CEEEeCccH
Confidence 999999999999999999999999877554432 222 34444432 148999999 999999976
Q ss_pred CccCcccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 187 PVLKHDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 187 p~l~a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+.+.|. ++|+|+|+|+||+.
T Consensus 168 ---------DaqiA~La~~g~~~~I~S~D~D~l~fg~~ 196 (363)
T 3ory_A 168 ---------EAQAAYIVKKGDAYASASQDYDSLLFGSP 196 (363)
T ss_dssp ---------HHHHHHHHHTTSCSEEECSSSHHHHTTCS
T ss_pred ---------HHHHHHHHHCCCeEEEECCCcCccccCCC
Confidence 678999999887 67999999999985
No 3
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.97 E-value=8.9e-31 Score=235.75 Aligned_cols=155 Identities=23% Similarity=0.352 Sum_probs=130.0
Q ss_pred ccccccccccccc----eeeccccccCcEEEeecchhhhhhhhh--------hhhcCCchHHHHHHHHHHHHHHhcCCee
Q psy12967 57 GVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDSSTI--------AEHSSQKNMYLRNLFFRTSYLLLLGVKP 124 (222)
Q Consensus 57 GI~gL~~~l~~~~----~~~~i~~l~Gk~iAID~s~wl~~~~~~--------~~~~~~~~~~l~~~f~R~~~Ll~~gI~P 124 (222)
||+|||++|++.+ ++.++++|+|++++||+|+|+||+.+. +++.|.+|+|+.++|+|+++|+++||+|
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~P 80 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP 80 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCEE
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHCCCCc
Confidence 8999999999753 799999999999999999999998542 3457899999999999999999999999
Q ss_pred EEEeeCCCCCCchhhHHHHHHHhhhhccCcc---ccc--cchhhhhhHH------------HHHHHhCCceEEEecCCCC
Q psy12967 125 IFVLEGKAPVLKHDTIEKRQQAQGRSAGRNV---QAG--SRARNLFFRT------------SYLLLLGVKPIFVLEGKAP 187 (222)
Q Consensus 125 IfVFDG~~p~~K~~t~~~Rr~~r~~~~~~~~---e~g--s~ar~lf~R~------------~lL~~~GI~p~~vapGeap 187 (222)
+|||||.+|++|.++..+|+++|..+..++. +.+ +.+.++++|+ .+|+++|| |++++||||
T Consensus 81 ~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gi-p~i~ap~EA- 158 (341)
T 3q8k_A 81 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGI-PYLDAPSEA- 158 (341)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTC-CEEECSSCH-
T ss_pred eEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCC-CEEECCccH-
Confidence 9999999999999999999998887644332 122 1344444431 48999999 999999876
Q ss_pred ccCcccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 188 VLKHDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 188 ~l~a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+.+.|. ++|+|+|+|+||+.
T Consensus 159 --------Dd~ia~La~~g~v~~i~s~D~D~l~~~~~ 187 (341)
T 3q8k_A 159 --------EASCAALVKAGKVYAAATEDMDCLTFGSP 187 (341)
T ss_dssp --------HHHHHHHHHTTSSSEEECSCTHHHHTTCS
T ss_pred --------HHHHHHHHhcCCeEEEEcCCccccccCCc
Confidence 678999999887 57999999999985
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.97 E-value=2.6e-31 Score=238.83 Aligned_cols=153 Identities=27% Similarity=0.398 Sum_probs=125.7
Q ss_pred hccccccccccccceeeccccccCcEEEeecchhhhhhhhh---------hhhcCCchHHHHHHHHHHHHHHhcCCeeEE
Q psy12967 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126 (222)
Q Consensus 56 MGI~gL~~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~---------~~~~~~~~~~l~~~f~R~~~Ll~~gI~PIf 126 (222)
||| |||++| ..++.++++|+|++||||+|+||||+.+. .++.|.+|+|+.++|+|+++|+++||+|||
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~ 77 (340)
T 1b43_A 1 MGV-PIGEII--PRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVY 77 (340)
T ss_dssp -CC-CCGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCC-ChHHHh--cccccCHHHhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCEEEE
Confidence 999 999999 67889999999999999999999998543 235688899999999999999999999999
Q ss_pred EeeCCCCCCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhH------------HHHHHHhCCceEEEecCCCCcc
Q psy12967 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFR------------TSYLLLLGVKPIFVLEGKAPVL 189 (222)
Q Consensus 127 VFDG~~p~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R------------~~lL~~~GI~p~~vapGeap~l 189 (222)
||||.+|+.|.++..+|+++|+++..++.+ .+. .+..+++| ..+|+++|| |++++||||
T Consensus 78 VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gi-p~i~ap~EA--- 153 (340)
T 1b43_A 78 VFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGI-PIVQAPSEG--- 153 (340)
T ss_dssp EECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTC-CEEECSSCH---
T ss_pred EecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-cEEEcChhH---
Confidence 999999999999999888888776544331 121 12222211 148999999 999999876
Q ss_pred CcccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 190 KHDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 190 ~a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+.+.|. |+|+|||+|+||+.
T Consensus 154 ------Da~iA~La~~g~~~~i~S~D~D~l~~g~~ 182 (340)
T 1b43_A 154 ------EAQAAYMAAKGSVYASASQDYDSLLFGAP 182 (340)
T ss_dssp ------HHHHHHHHHHTSSSEEECSSSHHHHTTCS
T ss_pred ------HHHHHHHHHcCCEEEEEccCCCcceecCc
Confidence 679999998876 78999999999985
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.96 E-value=2.7e-30 Score=231.02 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=126.8
Q ss_pred hccccccccccccceeeccccccCcEEEeecchhhhhhhhh---------hhhcCCchHHHHHHHHHHHHHHhcCCeeEE
Q psy12967 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126 (222)
Q Consensus 56 MGI~gL~~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~---------~~~~~~~~~~l~~~f~R~~~Ll~~gI~PIf 126 (222)
||| |||++| ..+++++++++|++++||+|+|+||+.+. .++.|.+|+++.++++|+++|+.++|+|||
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~ 77 (326)
T 1a76_A 1 MGV-QFGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIW 77 (326)
T ss_dssp -CC-CCGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCC-ChHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeEEE
Confidence 999 999999 67899999999999999999999998543 235688899999999999999999999999
Q ss_pred EeeCCCCCCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhH------------HHHHHHhCCceEEEecCCCCcc
Q psy12967 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFR------------TSYLLLLGVKPIFVLEGKAPVL 189 (222)
Q Consensus 127 VFDG~~p~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R------------~~lL~~~GI~p~~vapGeap~l 189 (222)
||||.+|+.|.++..+|+..|..+.++..+ .|+ ++.++++| ..+|+++|| |++++||||
T Consensus 78 vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi-~~i~apgEA--- 153 (326)
T 1a76_A 78 VFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGI-PYVEAPSEG--- 153 (326)
T ss_dssp EECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTC-CEEECSSCH---
T ss_pred EEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-CeEECCccH---
Confidence 999999999999999998888776554432 121 23333322 148899999 999999976
Q ss_pred CcccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 190 KHDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 190 ~a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+.+.|. |+|+|||+|+||+.
T Consensus 154 ------D~~ia~La~~g~~~~I~S~D~Dll~~~~~ 182 (326)
T 1a76_A 154 ------EAQASYMAKKGDVWAVVSQDYDALLYGAP 182 (326)
T ss_dssp ------HHHHHHHHHTTSSSEEECSSSGGGGGTCS
T ss_pred ------HHHHHHHHHCCCEEEEecCCcccceecCC
Confidence 678999998886 78999999999985
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.96 E-value=1.4e-29 Score=227.16 Aligned_cols=153 Identities=22% Similarity=0.352 Sum_probs=125.7
Q ss_pred hccccccccccccceeeccccccCcEEEeecchhhhhhhhh---------hhhcCCchHHHHHHHHHHHHHHhcCCeeEE
Q psy12967 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMYLRNLFFRTSYLLLLGVKPIF 126 (222)
Q Consensus 56 MGI~gL~~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~---------~~~~~~~~~~l~~~f~R~~~Ll~~gI~PIf 126 (222)
||| |||++| ..+++++++|+|++++||+|+|+||+.+. .++.|.+|+++.++++|+++|++++|+|||
T Consensus 1 MGI-~L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~ 77 (336)
T 1rxw_A 1 MGA-DIGDLF--EREEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVF 77 (336)
T ss_dssp --C-TGGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCC-ChHHHH--hcceeCHHHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEEEE
Confidence 999 999999 57899999999999999999999998643 235688899999999999999999999999
Q ss_pred EeeCCCCCCchhhHHHHHHHhhhhccCccc---cc-cchhhhhhH------------HHHHHHhCCceEEEecCCCCccC
Q psy12967 127 VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ---AG-SRARNLFFR------------TSYLLLLGVKPIFVLEGKAPVLK 190 (222)
Q Consensus 127 VFDG~~p~~K~~t~~~Rr~~r~~~~~~~~e---~g-s~ar~lf~R------------~~lL~~~GI~p~~vapGeap~l~ 190 (222)
||||.+|+.|.++..+|+.+|..+..++.+ .| +.++.++++ ..+|+++|| |++++||||
T Consensus 78 vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi-~~i~apgeA---- 152 (336)
T 1rxw_A 78 VFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGI-PFVDAPSEG---- 152 (336)
T ss_dssp EECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTC-CEEECSSCH----
T ss_pred EEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCC-CEEEcCchH----
Confidence 999999999999999999998876533321 22 233443322 148899999 999999975
Q ss_pred cccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 191 HDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 191 a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
||+||++...|. ++|+|+|+|.||+.
T Consensus 153 -----EA~lA~la~~g~~~~I~S~D~Dllql~~~ 181 (336)
T 1rxw_A 153 -----EAQAAYMAAKGDVEYTGSQDYDSLLFGSP 181 (336)
T ss_dssp -----HHHHHHHHHTTSSSEEECSSSHHHHTTCS
T ss_pred -----HHHHHHHHHcCCeeEEEcCCCCcceecCC
Confidence 678999988876 68999999999985
No 7
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.96 E-value=9.8e-30 Score=231.80 Aligned_cols=155 Identities=23% Similarity=0.371 Sum_probs=113.5
Q ss_pred ccccccccccccc----eeeccccccCcEEEeecchhhhhhhh--------hhhhcCCchHHHHHHHHHHHHHHhcCCee
Q psy12967 57 GVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDSST--------IAEHSSQKNMYLRNLFFRTSYLLLLGVKP 124 (222)
Q Consensus 57 GI~gL~~~l~~~~----~~~~i~~l~Gk~iAID~s~wl~~~~~--------~~~~~~~~~~~l~~~f~R~~~Ll~~gI~P 124 (222)
||+|||++|++.. +++++++|+|++|+||+|+|+||+.+ +.++.|.+|+|+.++|+|+++|+++||+|
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P 80 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP 80 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCE
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCe
Confidence 8999999999864 68999999999999999999999754 33456888999999999999999999999
Q ss_pred EEEeeCCCCCCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhH------------HHHHHHhCCceEEEecCCCC
Q psy12967 125 IFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFR------------TSYLLLLGVKPIFVLEGKAP 187 (222)
Q Consensus 125 IfVFDG~~p~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R------------~~lL~~~GI~p~~vapGeap 187 (222)
+|||||.+|++|.++..+|+.+|..+.....+ .++ .+..+++| ..+|+++|| |++++||||
T Consensus 81 ~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi-~~i~apgEA- 158 (379)
T 1ul1_X 81 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGI-PYLDAPSEA- 158 (379)
T ss_dssp EEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTC-CEEECSSCH-
T ss_pred EEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCC-CeecCCCcH-
Confidence 99999999999999998888888766433321 111 22222221 248899999 999999976
Q ss_pred ccCcccHHHHHHHhhhhcCC---eeecCcceeecccc
Q psy12967 188 VLKHDTIEKRQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 188 ~l~a~~~ae~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
+++||.+...|. |+|+|||+|+||+.
T Consensus 159 --------Dd~iA~La~~g~~~~iiS~D~Dll~~g~~ 187 (379)
T 1ul1_X 159 --------EASCAALVKAGKVYAAATEDMDCLTFGSP 187 (379)
T ss_dssp --------HHHHHHHHHHTSSSEEECSCTHHHHTTCS
T ss_pred --------HHHHHHHHhcCCeEEEEecCcCccccccc
Confidence 678999988886 67999999999985
No 8
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.4e-27 Score=215.15 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=98.9
Q ss_pred ccccccceeeccccccCcEEEeecchhhhhhhhh---------hhhcCCchHHHHHHHHHHHHHHhcCCeeEEEeeCCCC
Q psy12967 63 GILTPICERKPIWELQDKTIAIDLSAWICDSSTI---------AEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAP 133 (222)
Q Consensus 63 ~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~---------~~~~~~~~~~l~~~f~R~~~Ll~~gI~PIfVFDG~~p 133 (222)
++++++.+++++++|+|++++||+|+||||+.+. .++.|.+|+++.++++|+++|+++||+|||||||.+|
T Consensus 2 ~~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~ 81 (346)
T 2izo_A 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPP 81 (346)
T ss_dssp CCCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC---
T ss_pred CcCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 4667888999999999999999999999998542 3346889999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHhhhhccCccc---ccc--chhhhhhHH------------HHHHHhCCceEEEecCCCCccCcccHHH
Q psy12967 134 VLKHDTIEKRQQAQGRSAGRNVQ---AGS--RARNLFFRT------------SYLLLLGVKPIFVLEGKAPVLKHDTIEK 196 (222)
Q Consensus 134 ~~K~~t~~~Rr~~r~~~~~~~~e---~gs--~ar~lf~R~------------~lL~~~GI~p~~vapGeap~l~a~~~ae 196 (222)
++|.++..+|+..|..+.+.+.+ .|+ +++.+++|. .+|+++|| |++++|||| +
T Consensus 82 ~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi-~~i~ap~EA---------D 151 (346)
T 2izo_A 82 EQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGI-PIVQAPSEG---------E 151 (346)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHTC-CEEECSSCH---------H
T ss_pred chhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCC-CEEEcCCcH---------H
Confidence 99999999999999877655432 222 334443321 38899999 999999976 6
Q ss_pred HHHHhhhhcCC---eeecCcceeecccc
Q psy12967 197 RQQAQGRSAGR---NVQAGSRARLKGLQ 221 (222)
Q Consensus 197 ~~~a~l~~~g~---~~T~DsD~~lFG~~ 221 (222)
++||.+...|. |+|+|+|+|+||+.
T Consensus 152 a~ia~La~~g~~~~I~S~D~D~l~~~~~ 179 (346)
T 2izo_A 152 AEAAYLNKLGLSWAAASQDYDAILFGAK 179 (346)
T ss_dssp HHHHHHHHTTSSSEEECSSSHHHHTTCS
T ss_pred HHHHHHHhCCCeEEEECCCCCcceecCC
Confidence 78999998886 78999999999985
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.55 E-value=4.2e-16 Score=154.04 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=102.4
Q ss_pred eeccccccCcEEEeecchhhhhhhh----hhhhcCCchHHHHHHHHHHHHHHhc-CCeeEEEeeCCCCCCchhhHHHHHH
Q psy12967 71 RKPIWELQDKTIAIDLSAWICDSST----IAEHSSQKNMYLRNLFFRTSYLLLL-GVKPIFVLEGKAPVLKHDTIEKRQQ 145 (222)
Q Consensus 71 ~~~i~~l~Gk~iAID~s~wl~~~~~----~~~~~~~~~~~l~~~f~R~~~Ll~~-gI~PIfVFDG~~p~~K~~t~~~Rr~ 145 (222)
++++++++|+.++||+|+|+||+.+ +.++.|.+|.++.++++++.+|++. ++.|+|||||.++.+|.+....++.
T Consensus 4 ~~~l~~~~~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa 83 (832)
T 1bgx_T 4 MLPLFEPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKA 83 (832)
T ss_dssp SSCCCCCCTTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTS
T ss_pred ccCHHHhCCCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHh
Confidence 5789999999999999999999865 3456789999999999999998844 6999999999988898888777765
Q ss_pred HhhhhccCccccccchhhhhhHHHHHHHhCCceEEEecC-CCCccCcccHHHHHHHhhhh----cCC---eeecCcceee
Q psy12967 146 AQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQGRS----AGR---NVQAGSRARL 217 (222)
Q Consensus 146 ~r~~~~~~~~e~gs~ar~lf~R~~lL~~~GI~p~~vapG-eap~l~a~~~ae~~~a~l~~----~g~---~~T~DsD~~l 217 (222)
.|........+ .... -..+|..+|| |++++|| || +.+|+.+.. .|. ++|+|+|++.
T Consensus 84 ~R~~~pe~l~~----q~~~--i~~~l~~~gi-~~i~~pg~EA---------DD~iatLa~~~~~~G~~v~IvS~DkDllq 147 (832)
T 1bgx_T 84 GRAPTPEDFPR----QLAL--IKELVDLLGL-ARLEVPGYEA---------DDVLASLAKKAEKEGYEVRILTADKDLYQ 147 (832)
T ss_dssp CCCCCCTTSTT----GGGT--HHHHHHHTTC-CCCCCSSSCH---------HHHHHHHHHHHHHHTCCBCCCCSSTTCCT
T ss_pred ccccChHHHHH----HHHH--HHHHHHHCCC-CEEEeCCccH---------HHHHHHHHHHHHHcCCeEEEEeCCCChhh
Confidence 55543221111 1111 1247899999 8888886 65 456666644 453 7899999999
Q ss_pred cccc
Q psy12967 218 KGLQ 221 (222)
Q Consensus 218 FG~~ 221 (222)
||+.
T Consensus 148 l~~~ 151 (832)
T 1bgx_T 148 LLSD 151 (832)
T ss_dssp TCCT
T ss_pred cCcC
Confidence 9975
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.44 E-value=6.9e-14 Score=123.10 Aligned_cols=145 Identities=10% Similarity=0.036 Sum_probs=87.1
Q ss_pred ccccccccccceeeccccccCcEEEeecchhhhhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCee---EEEeeCCCCCC
Q psy12967 59 KDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKP---IFVLEGKAPVL 135 (222)
Q Consensus 59 ~gL~~~l~~~~~~~~i~~l~Gk~iAID~s~wl~~~~~~~~~~~~~~~~l~~~f~R~~~Ll~~gI~P---IfVFDG~~p~~ 135 (222)
+||-+++. .+...+++ .++.++||+|.|+||+.+ ++.|.+ ++.++++++.+|++. .+| ++||||.++.+
T Consensus 2 ~~~~~~~~--~~~~~~~~-~~~lllIDg~~llyRa~~--~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tf 73 (290)
T 1exn_A 2 KSWGKFIE--EEEAEMAS-RRNLMIVDGTNLGFRFKH--NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSVF 73 (290)
T ss_dssp --------------------CEEEEEEHHHHHHHHHH--HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHH
T ss_pred cchHHHhh--hccccccc-CCCEEEEECcHHHHHHHh--CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchh
Confidence 35666663 34455666 788999999999999865 556776 999999999999865 455 99999987766
Q ss_pred chhhHHHHHHHhhhhccCccccccchhhh-hh-HHHHHHH--hCCceEEEecC-CCCccCcccHHHHHHHhhhh----cC
Q psy12967 136 KHDTIEKRQQAQGRSAGRNVQAGSRARNL-FF-RTSYLLL--LGVKPIFVLEG-KAPVLKHDTIEKRQQAQGRS----AG 206 (222)
Q Consensus 136 K~~t~~~Rr~~r~~~~~~~~e~gs~ar~l-f~-R~~lL~~--~GI~p~~vapG-eap~l~a~~~ae~~~a~l~~----~g 206 (222)
+.+....++..|........+..+..+.. +. -..+|.. +|| |++.+|| ||+. +|+.+.. .|
T Consensus 74 R~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gi-p~i~~~g~EADD---------viatLa~~~~~~G 143 (290)
T 1exn_A 74 RLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF-PTFTIRGVEADD---------MAAYIVKLIGHLY 143 (290)
T ss_dssp HHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTS-CEECCTTBCHHH---------HHHHHHHHHGGGS
T ss_pred hhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCC-cEEEECCcCHHH---------HHHHHHHHHHHCC
Confidence 66665555555554321111110112222 11 1247788 999 8888887 7654 4544433 35
Q ss_pred C---eeecCcceeecccc
Q psy12967 207 R---NVQAGSRARLKGLQ 221 (222)
Q Consensus 207 ~---~~T~DsD~~lFG~~ 221 (222)
. ++|.|.|++.|++.
T Consensus 144 ~~v~IvS~DkDl~Qlv~~ 161 (290)
T 1exn_A 144 DHVWLISTDGDWDTLLTD 161 (290)
T ss_dssp SCEEEECSCGGGGGGCCS
T ss_pred CcEEEEeCCCChhhcCCC
Confidence 3 68999999999863
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.99 E-value=2.2e-11 Score=109.80 Aligned_cols=42 Identities=17% Similarity=0.424 Sum_probs=38.8
Q ss_pred CcccchhhhhhccccccCcccccCceEEEecceeeeeccccc
Q psy12967 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 1 mgv~~lw~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
|||+|||++|+|+++++++++|+|++||||+|+||+|..+.+
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~ 42 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIAC 42 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHT
T ss_pred CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhcc
Confidence 999999999999999999999999999999999999976654
No 12
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=98.40 E-value=4.6e-08 Score=88.41 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=37.3
Q ss_pred Ccccchhhhhh-cccccc-CcccccCceEEEecceeeeeccccc
Q psy12967 1 MGVKDLWGILT-PICERK-PIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 1 mgv~~lw~~l~-~~~~~~-~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||| |||++|+ |+.+++ ++++|+||+||||+|.|++++....
T Consensus 11 MGv-~L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~ 53 (363)
T 3ory_A 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAI 53 (363)
T ss_dssp CSC-CCGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHC
T ss_pred cCc-CHHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhh
Confidence 999 9999998 788999 9999999999999999999865543
No 13
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=98.24 E-value=1.4e-07 Score=84.15 Aligned_cols=39 Identities=28% Similarity=0.217 Sum_probs=35.4
Q ss_pred CcccchhhhhhccccccCcccccCceEEEecceeeeeccccc
Q psy12967 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 1 mgv~~lw~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||| |||++| +.+++++++|+|++||||+|+|++++.++.
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~ 39 (340)
T 1b43_A 1 MGV-PIGEII--PRKEIELENLYGKKIAIDALNAIYQFLSTI 39 (340)
T ss_dssp -CC-CCGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHS
T ss_pred CCC-ChHHHh--cccccCHHHhCCCEEEEEhHHHHHHHHHHh
Confidence 999 999999 889999999999999999999999986654
No 14
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=98.16 E-value=2.8e-07 Score=81.81 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=35.6
Q ss_pred CcccchhhhhhccccccCcccccCceEEEecceeeeeccccc
Q psy12967 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 1 mgv~~lw~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||| |||++| +.+++++++++|++|+||+|.|++++.++.
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~ 39 (326)
T 1a76_A 1 MGV-QFGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSI 39 (326)
T ss_dssp -CC-CCGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHS
T ss_pred CCC-ChHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhh
Confidence 999 999999 899999999999999999999999976654
No 15
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=98.11 E-value=3.9e-07 Score=81.20 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=34.6
Q ss_pred CcccchhhhhhccccccCcccccCceEEEecceeeeeccccc
Q psy12967 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 1 mgv~~lw~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||| |||++| +.+++++++|+|++|+||+|.|++++.++.
T Consensus 1 MGI-~L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~ 39 (336)
T 1rxw_A 1 MGA-DIGDLF--EREEVELEYFSGKKIAVDAFNTLYQFISII 39 (336)
T ss_dssp --C-TGGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHS
T ss_pred CCC-ChHHHH--hcceeCHHHhCCCEEEEEhHHHHHHHHHhh
Confidence 999 999999 889999999999999999999999977754
No 16
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=98.10 E-value=3.1e-07 Score=82.25 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.5
Q ss_pred cccchhhhhhccc----cccCcccccCceEEEecceeeeeccccc
Q psy12967 2 GVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 2 gv~~lw~~l~~~~----~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||+|||++|++.+ +++++++|+|++|+||+|.|++++-++.
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~ 45 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV 45 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHC
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHcc
Confidence 8999999999875 7899999999999999999999987654
No 17
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=97.91 E-value=1.6e-06 Score=78.66 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.6
Q ss_pred cccchhhhhhccc----cccCcccccCceEEEecceeeeeccccc
Q psy12967 2 GVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 2 gv~~lw~~l~~~~----~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
||+|||++|.|.+ +++++++++|++|+||+|.|++++.++.
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~ 45 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV 45 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhC
Confidence 8999999999987 6899999999999999999999976654
No 18
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=96.65 E-value=0.0049 Score=54.17 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=69.6
Q ss_pred cEEEeecchhhhhhhh--hhhhcCCchHHHHH-HHHHHHHHH-h----cCCeeEEEeeCCC-CCCchhh----HHHHHHH
Q psy12967 80 KTIAIDLSAWICDSST--IAEHSSQKNMYLRN-LFFRTSYLL-L----LGVKPIFVLEGKA-PVLKHDT----IEKRQQA 146 (222)
Q Consensus 80 k~iAID~s~wl~~~~~--~~~~~~~~~~~l~~-~f~R~~~Ll-~----~gI~PIfVFDG~~-p~~K~~t----~~~Rr~~ 146 (222)
+-+-||+|.-+|++.. +....|.+|..+++ ++.-+.+++ + ..=..+++||+.. +....+. -+.|...
T Consensus 14 ~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~ 93 (305)
T 3h7i_A 14 GICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKA 93 (305)
T ss_dssp CEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHH
T ss_pred CEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCC
Confidence 5789999999999742 23345778888877 555556665 3 2334578999763 3221111 1223222
Q ss_pred hhhhccCccccccchhhhh-----hHHHHHHHhCCceEEEecC-CCCccCcccHHHHHHHhhhhcCC---eeecCccee
Q psy12967 147 QGRSAGRNVQAGSRARNLF-----FRTSYLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQAQGRSAGR---NVQAGSRAR 216 (222)
Q Consensus 147 r~~~~~~~~e~gs~ar~lf-----~R~~lL~~~GI~p~~vapG-eap~l~a~~~ae~~~a~l~~~g~---~~T~DsD~~ 216 (222)
.+... .+.-.++ .-...|.++|| |++..|| ||+.+-+- .| .+....|. ++|.|.|++
T Consensus 94 PeeL~-------~Q~~~l~~Qi~p~ike~l~a~gi-~~l~~~G~EADDiIgT-LA----~~a~~~g~~V~IvSgDKDl~ 159 (305)
T 3h7i_A 94 REEST-------WDWEGYFESSHKVIDELKAYMPY-IVMDIDKYEANDHIAV-LV----KKFSLEGHKILIISSDGDFT 159 (305)
T ss_dssp HHHCS-------SCHHHHHHHHHHHHHHHHHHSSS-EEECCTTCCHHHHHHH-HH----HHHHHTTCCEEEECSSCCCG
T ss_pred CHHHH-------HHHHHhhhhhHHHHHHHHHHCCC-CEEccCCccHHHHHHH-HH----HHHHHCCCcEEEEeCCCCcc
Confidence 22111 0110111 11237889999 8888888 88765321 11 22223343 679999986
No 19
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.00069 Score=60.40 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=32.1
Q ss_pred hhhhccccccCcccccCceEEEecceeeeeccccc
Q psy12967 8 GILTPICERKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
+++.|+.+++++++|+|++|+||+|.|++++.++.
T Consensus 2 ~~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~ 36 (346)
T 2izo_A 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAI 36 (346)
T ss_dssp CCCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSC
T ss_pred CcCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhc
Confidence 57899999999999999999999999999987655
No 20
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=86.78 E-value=0.54 Score=47.92 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=53.9
Q ss_pred hccccccccccc-cce---e---eccccccCcEEEeecchhhhhhhhhhhhc---CCch-HHHHHHHHHHHHHHhcCCee
Q psy12967 56 MGVKDLWGILTP-ICE---R---KPIWELQDKTIAIDLSAWICDSSTIAEHS---SQKN-MYLRNLFFRTSYLLLLGVKP 124 (222)
Q Consensus 56 MGI~gL~~~l~~-~~~---~---~~i~~l~Gk~iAID~s~wl~~~~~~~~~~---~~~~-~~l~~~f~R~~~Ll~~gI~P 124 (222)
|||++++.+|.. +.. . ..+-++. -+-+|...-||.+.+-.+.. ..+. .-+..+|..+-.|+. -|+|
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~~~~~~pe~D--nLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~-~vrP 77 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLIDGSQIPEFD--NLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFH-TIKP 77 (1155)
T ss_pred CChHHHHHHHHHhCcchhhcccCCCCCcCC--eEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHH-hcCc
Confidence 999999999973 211 1 1111222 38899999999885422111 1111 233444555555543 2555
Q ss_pred ----EEEeeCCCCCCchhhHHHHHHHh
Q psy12967 125 ----IFVLEGKAPVLKHDTIEKRQQAQ 147 (222)
Q Consensus 125 ----IfVFDG~~p~~K~~t~~~Rr~~r 147 (222)
++.+||.+|.+|..++..||-+.
T Consensus 78 rkllyiAiDGVAPrAKmnqQR~RRfrs 104 (1155)
T 3pie_A 78 KQTFYMAIDGVAPRAKMNQQRARRFRT 104 (1155)
T ss_pred ceEEEEEecCCCChhHHHHHHHHHHHh
Confidence 57899999999999887776543
No 21
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=86.46 E-value=0.41 Score=48.89 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=51.8
Q ss_pred hccccccccccc-cc---ee---eccccccCcEEEeecchhhhhhhhhhhhcC---Cc-hHHHHHHHH---HHHHHHhcC
Q psy12967 56 MGVKDLWGILTP-IC---ER---KPIWELQDKTIAIDLSAWICDSSTIAEHSS---QK-NMYLRNLFF---RTSYLLLLG 121 (222)
Q Consensus 56 MGI~gL~~~l~~-~~---~~---~~i~~l~Gk~iAID~s~wl~~~~~~~~~~~---~~-~~~l~~~f~---R~~~Ll~~g 121 (222)
|||++++.+|.. +. +. ..+-++. -+.||...-||.+.+..+... .+ ..-...+|. |+..+..=.
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~D--nLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPr 78 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEFD--NLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQ 78 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCCS--EEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcCC--eEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccc
Confidence 999999999973 21 11 1111222 389999999998764322110 11 122333333 333333333
Q ss_pred CeeEEEeeCCCCCCchhhHHHHHHHh
Q psy12967 122 VKPIFVLEGKAPVLKHDTIEKRQQAQ 147 (222)
Q Consensus 122 I~PIfVFDG~~p~~K~~t~~~Rr~~r 147 (222)
=.-++-+||.+|.+|..++..||-+.
T Consensus 79 kll~iAiDGvAPrAKmnqQR~RRfrs 104 (1140)
T 2y35_A 79 RLFFLSVDGVAPRAKMNQQRSRRFRT 104 (1140)
T ss_dssp SEEEEECCCSCCHHHHHHHHHHHHHH
T ss_pred eeEEEEecCCCchhHHHHHHHHHhhh
Confidence 33477999999999998887776543
No 22
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=66.36 E-value=0.99 Score=44.62 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=25.0
Q ss_pred ccCcccccCceEEEecceeeeeccccc
Q psy12967 16 RKPIWELQDKTIAIDLSAWICDSSTIA 42 (222)
Q Consensus 16 ~~~~~~~~~~~~~~d~s~w~~~~~~~~ 42 (222)
++|+++++|+.++||.|.|++++-++.
T Consensus 4 ~~~l~~~~~~~llIDg~~~l~ra~~a~ 30 (832)
T 1bgx_T 4 MLPLFEPKGRVLLVDGHHLAYRTFHAL 30 (832)
T ss_dssp SSCCCCCCTTSCCCCCSTHHHHTTSSC
T ss_pred ccCHHHhCCCEEEEEChHHHHHHHhcC
Confidence 679999999999999999999988866
No 23
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=61.76 E-value=4.8 Score=40.02 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=38.0
Q ss_pred EEeecchhhhhhhhhhhhc-CCch-HHHHHHHHHHHHHHhcCCee----EEEeeCCCCCCchhhHHHHHHH
Q psy12967 82 IAIDLSAWICDSSTIAEHS-SQKN-MYLRNLFFRTSYLLLLGVKP----IFVLEGKAPVLKHDTIEKRQQA 146 (222)
Q Consensus 82 iAID~s~wl~~~~~~~~~~-~~~~-~~l~~~f~R~~~Ll~~gI~P----IfVFDG~~p~~K~~t~~~Rr~~ 146 (222)
+-+|...-||.+.+-.+.. ..+. .-+..+|..|-+|+ .-|+| ++.+||.+|.+|..++..||-+
T Consensus 55 LYlDmNgIIH~c~h~~~~~~~~te~e~~~~If~yid~l~-~~vrPrklly~AiDGVAPrAKmnQQRsRRfr 124 (899)
T 3fqd_A 55 LYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRIL-AMVRPRQLLFIAIDGVAPRAKMNQQRSRRFR 124 (899)
T ss_dssp EEEETHHHHHHHHSCSSSCCCCSHHHHHHHHHHHHHHHH-HHHCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred EEEecchhhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH-HHcCcceeEEEeecCCCCchHHHHHHHHHHH
Confidence 6677788888775421111 1111 23344454444443 23344 6789999999999988777764
No 24
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=25.02 E-value=12 Score=32.14 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=15.5
Q ss_pred cchhhhhhccccccCcccccCceEEEecceeeeeccc
Q psy12967 4 KDLWGILTPICERKPIWELQDKTIAIDLSAWICDSST 40 (222)
Q Consensus 4 ~~lw~~l~~~~~~~~~~~~~~~~~~~d~s~w~~~~~~ 40 (222)
+||=+++ ..+.+++.+ .++.++||.|.|++++-+
T Consensus 2 ~~~~~~~--~~~~~~~~~-~~~lllIDg~~llyRa~~ 35 (290)
T 1exn_A 2 KSWGKFI--EEEEAEMAS-RRNLMIVDGTNLGFRFKH 35 (290)
T ss_dssp --------------------CEEEEEEHHHHHHHHHH
T ss_pred cchHHHh--hhccccccc-CCCEEEEECcHHHHHHHh
Confidence 4555666 445556777 889999999999999755
No 25
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=22.06 E-value=36 Score=28.09 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.8
Q ss_pred cCcccccCceEEEec
Q psy12967 17 KPIWELQDKTIAIDL 31 (222)
Q Consensus 17 ~~~~~~~~~~~~~d~ 31 (222)
.|+++|+|||||+.-
T Consensus 94 ~~i~DLkGKkIav~~ 108 (291)
T 2nxo_A 94 VPLDRLDGARVALGS 108 (291)
T ss_dssp SCTTSCSSSEEEEET
T ss_pred CCHHHhCCCEEEeCC
Confidence 467999999999974
Done!