Your job contains 1 sequence.
>psy12967
MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRAIMGVKD
LWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTSYLLLL
GVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSYLLLLGVKPIF
VLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARLKGLQT
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12967
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 271 1.5e-22 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 253 1.4e-20 1
UNIPROTKB|E9PLG0 - symbol:GEN1 "Flap endonuclease GEN hom... 240 2.7e-20 1
UNIPROTKB|E9PM30 - symbol:GEN1 "Flap endonuclease GEN hom... 231 2.5e-19 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 240 4.8e-19 1
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 236 1.3e-18 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 230 5.6e-18 1
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 223 3.1e-17 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 221 5.1e-17 1
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 216 1.8e-16 1
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 164 3.1e-12 1
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 168 2.8e-11 1
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 144 4.1e-10 1
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 151 1.4e-09 1
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 157 4.1e-09 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 155 8.5e-09 1
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 142 2.2e-08 1
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 146 7.2e-08 1
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 147 8.0e-08 1
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 142 1.4e-07 2
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 144 2.6e-07 1
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 144 2.9e-07 1
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 144 3.1e-07 1
DICTYBASE|DDB_G0294290 - symbol:DDB_G0294290 "xeroderma p... 143 3.4e-07 1
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 142 5.8e-07 1
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 142 7.4e-07 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 123 2.6e-06 1
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 135 3.5e-06 1
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 135 4.3e-06 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 128 5.1e-06 1
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 133 5.9e-06 1
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 133 5.9e-06 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 117 0.00013 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 119 0.00015 1
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 271 (100.5 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 51/94 (54%), Positives = 66/94 (70%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
Score = 166 (63.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE---HSSQ--KNMYLRAI 55
MGVK+LWG+LTP CERKPI EL+ K +AIDL+ W+C+S + + H KN++ R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 113 (44.8 bits), Expect = 0.00091, P = 0.00091
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 203
+NLFFRT YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 53 KNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFR 94
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 253 (94.1 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + ++ +L+NLFFRT
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 116 YLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGR 149
YL+ V P+FVLEG AP LK I KR + Q R
Sbjct: 61 YLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFR 94
Score = 149 (57.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAE---HSSQ--KNMYLRAI 55
MGVK+LW +LTP ERKPI EL+ K +AIDL+ W+C+S + + H KN++ R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTC 60
Query: 56 MGVKDLWGILTPI 68
+ W +TP+
Sbjct: 61 YLI---WEQVTPV 70
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG-RNVQAGSRARLK 218
+NLFFRT YL+ V P+FVLEG AP LK I KR + Q R ++ G++ K
Sbjct: 53 KNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAK 110
>UNIPROTKB|E9PLG0 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00982888
ProteinModelPortal:E9PLG0 SMR:E9PLG0 Ensembl:ENST00000524465
ArrayExpress:E9PLG0 Bgee:E9PLG0 Uniprot:E9PLG0
Length = 126
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q++ S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKS 100
Score = 127 (49.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q++ S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHFKSV 113
Score = 122 (48.0 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTV 41
>UNIPROTKB|E9PM30 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00978436
ProteinModelPortal:E9PM30 SMR:E9PM30 Ensembl:ENST00000532257
ArrayExpress:E9PM30 Bgee:E9PM30 Uniprot:E9PM30
Length = 93
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 46/93 (49%), Positives = 62/93 (66%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
SYL + VK +FV+EG+ P LK D I KR Q++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQSR 93
Score = 122 (48.0 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTV 41
Score = 115 (45.5 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 201
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q++
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSR 93
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 240 (89.5 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+ + S +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D I KR Q++ S+G++
Sbjct: 61 SYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKS 100
Score = 127 (49.8 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D I KR Q++ S+G++ Q R+ K +
Sbjct: 54 RNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHFKSV 113
Score = 122 (48.0 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + P+ L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTV 41
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 236 (88.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 46/100 (46%), Positives = 67/100 (67%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P+LK D I KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKS 100
Score = 125 (49.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P+LK D I KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSV 113
Score = 120 (47.3 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLR 53
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + K +LR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLR 54
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 230 (86.0 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 46/99 (46%), Positives = 64/99 (64%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGK 99
Score = 125 (49.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I KR Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGKTWSQKTGRSHFKSV 113
Score = 117 (46.2 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTV 41
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 223 (83.6 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 45/99 (45%), Positives = 64/99 (64%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
SYL L+ VK +FV+EG+ P LK D I +R Q + +G+
Sbjct: 61 SYLTLMDVKLVFVMEGEPPKLKADVISRRNQIRYGPSGK 99
Score = 124 (48.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN-VQAGSRARLKGL 220
RNLFFR SYL L+ VK +FV+EG+ P LK D I +R Q + +G+ Q R+ K +
Sbjct: 54 RNLFFRISYLTLMDVKLVFVMEGEPPKLKADVISRRNQIRYGPSGKTWSQKAGRSHFKSV 113
Score = 113 (44.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + + L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTV 41
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 221 (82.9 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRN 154
SYL + VK +FV+EG+ P LK D + KR Q + +G++
Sbjct: 61 SYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKS 100
Score = 119 (46.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR SYL + VK +FV+EG+ P LK D + KR Q + G S Q R+ K +
Sbjct: 54 RNLFFRISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKSRSQKTGRSHFKSV 113
Score = 115 (45.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW IL P+ + + +L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTV 41
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH-SSQKNMYLRNLFFRT 114
MGV DLW +L P+ + + L KTIA+DLS W+C++ T+ + + +LRNLFFR
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFRI 60
Query: 115 SYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 153
S L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 61 SCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGK 99
Score = 113 (44.8 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGR 207
RNLFFR S L L+ VK +FV+EG+ P LK D I KR Q + +G+
Sbjct: 54 RNLFFRISCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGK 99
Score = 112 (44.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTI 41
MGV DLW +L P+ + + L KTIA+DLS W+C++ T+
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTV 41
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 51/149 (34%), Positives = 78/149 (52%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLS---AWIC-DSSTIAEHSSQK-------N 104
MGV +LW IL P+ + + L+ KT+A+DL +IC + T + S+
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDLRFTYMYICYKNRTCLKRSAYPLLPMTKIQ 60
Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRA-- 161
+ L NLFFR S+ +G+K +FV+EG+AP LK DT+ KR + + G S V R+
Sbjct: 61 LNLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGVARTGRSSF 120
Query: 162 RNLFFRTSYLL-LLGVKPIFVLEGKAPVL 189
+++ LL LGV P G+A +
Sbjct: 121 KSILKECLQLLECLGV-PWVQAAGEAEAM 148
Score = 117 (46.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 163 NLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
NLFFR S+ +G+K +FV+EG+AP LK DT+ KR + + G S V R+ K +
Sbjct: 65 NLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGVARTGRSSFKSI 123
Score = 72 (30.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDL 31
MGV +LW IL P+ + + L+ KT+A+DL
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDL 31
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 168 (64.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 40/112 (35%), Positives = 57/112 (50%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFF 112
MGV W I P + L+DK +A+D S WI E ++ KN ++ F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
R LL G++P+FV +G PVLK +TI +R++ R G+ A S AR L
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKSTARKL 109
Score = 105 (42.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGS 213
N S F R LL G++P+FV +G PVLK +TI +R++ R G+ A S
Sbjct: 48 NAVKNSHITGFFRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKE---RRQGKRESAKS 104
Query: 214 RAR-LKGLQ 221
AR L LQ
Sbjct: 105 TARKLLALQ 113
Score = 71 (30.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGV W I P + L+DK +A+D S WI
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWI 35
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS-STIAE-H-SSQKNMYLRNL 110
MGV+ LW +L C + + L+ K +A+D+S W+ + + + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQVNPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 151 (58.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS-STIAE-HSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + + + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRPVSPEALEGKVLAVDISIWLNQALKGVRDRHGNAIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 157 (60.3 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 37/92 (40%), Positives = 49/92 (53%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFF 112
MGV LW IL P+ + L +K +AID S WI E + K+ ++ F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
R LL G+KP+FV +G AP LK TI+KRQ
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQ 92
Score = 98 (39.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
N S F R LL G+KP+FV +G AP LK TI+KRQ
Sbjct: 48 NQLKSSHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQ 92
Score = 75 (31.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGV LW IL P+ + L +K +AID S WI
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWI 35
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 155 (59.6 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 40/112 (35%), Positives = 55/112 (49%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIA---EHSSQKNMYLRNLFF 112
MGV+ LW I+ P + L K +A+D S WI E ++ +N ++ F
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNL 164
R LL G+KP+FV +G APVLK TI R++ R GR A A L
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTIANRKK---RREGRREDAVQTASKL 109
Score = 99 (39.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 27/69 (39%), Positives = 34/69 (49%)
Query: 154 NVQAGSRARNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQA-QGRSAGRNVQAG 212
N S F R LL G+KP+FV +G APVLK TI R++ +GR VQ
Sbjct: 48 NALRNSHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIANRKKRREGRREDA-VQTA 106
Query: 213 SRARLKGLQ 221
S+ LQ
Sbjct: 107 SKLLAVQLQ 115
Score = 69 (29.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGV+ LW I+ P + L K +A+D S WI
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWI 35
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 142 (55.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS-STIAE-H-SSQKNMYLRNL 110
MGV+ LW +L C + + L+ K +A+D+S W+ + + + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 146 (56.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 43/148 (29%), Positives = 73/148 (49%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEH--SSQKNMYLRNLFFR 113
MGVK LW +L P + P+ LQ+K + +DLS W+ + + + ++++ +YLR F R
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAG---SRARNLFFRTSY 170
L+ L I V +G P +K T ++R +A+ A V+ S RN+ S
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 171 LLLLGVKPIFVLEGKAPVLKHDTIEKRQ 198
+ +K V+ +L D IE+ +
Sbjct: 121 I----IKEAKVIASTLGILCLDGIEEAE 144
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 147 (56.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDSSTIAEHSSQKNMYLRNLFFRTS 115
MG+ LW I+ P P+ L+ K +AID+S WI + +A S Q +LR L R S
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQ-LAYPSDQPFPHLRLLVNRLS 59
Query: 116 YLLLLGVKPIFVLEG-KAPVLKHDTIEKRQQ 145
LL ++P+FV +G + P LK +E R+Q
Sbjct: 60 KLLFYKIRPVFVFDGPQVPPLKRQVLEARRQ 90
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 142 (55.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS-STIAE-H-SSQKNMYLRNL 110
MGV+ LW +L C + + L+ K +A+D+S W+ + + + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
F R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQ 93
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 141 EKRQQAQGRSAGRNVQAGS 159
E R+QA+GR+A V GS
Sbjct: 364 ENRRQARGRNAPAAVDEGS 382
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 195 EKRQQAQGRSAGRNVQAGS 213
E R+QA+GR+A V GS
Sbjct: 364 ENRRQARGRNAPAAVDEGS 382
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 144 (55.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS-STIAE-HSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + + + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
F R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRR 92
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS-STIAE-HSSQ-KNMYLRNL 110
MGV+ LW +L C +P+ L+ K +A+D+S W+ + + + H + +N +L L
Sbjct: 1 MGVQGLWKLLE--CTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQ 144
F R LL ++P+FV +G+AP+LK T+ KR+
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRR 92
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 144 (55.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 34/93 (36%), Positives = 53/93 (56%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAE-HSSQ-KNMYLRNLFF 112
MGV+ LW +L R L+ K +A+D+S W+ + + + H + +N +L LF
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
R LL ++PIFV +G AP+LK T+ KR+Q
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQ 93
>DICTYBASE|DDB_G0294290 [details] [associations]
symbol:DDB_G0294290 "xeroderma pigmentosum group G
(XPG) family protein" species:44689 "Dictyostelium discoideum"
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 SMART:SM00485 dictyBase:DDB_G0294290 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
EMBL:AAFI02000262 RefSeq:XP_628749.1 ProteinModelPortal:Q54AQ1
EnsemblProtists:DDB0232365 GeneID:3385413 KEGG:ddi:DDB_G0294290
OMA:ENQNLIN Uniprot:Q54AQ1
Length = 977
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 44/116 (37%), Positives = 57/116 (49%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEHSSQK--NMYLRNLFF 112
MGV LW +L I L+ KT+AID S WI T+ N + F
Sbjct: 1 MGVPKLWELLQQSGTSIDINALEGKTLAIDASIWIHTFIRTLKNEKGDPMTNAPILGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRT 168
R LL L VKPIFV +G P LK TIE+R++ + R A +N++ R R L T
Sbjct: 61 RICKLLSLRVKPIFVFDGGVPYLKRRTIEERRKRRER-AEQNIEKNQR-RLLLINT 114
Score = 96 (38.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 165 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARL 217
F R LL L VKPIFV +G P LK TIE+R++ + R A +N++ R L
Sbjct: 59 FRRICKLLSLRVKPIFVFDGGVPYLKRRTIEERRKRRER-AEQNIEKNQRRLL 110
Score = 66 (28.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWI 35
MGV LW +L I L+ KT+AID S WI
Sbjct: 1 MGVPKLWELLQQSGTSIDINALEGKTLAIDASIWI 35
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 142 (55.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 36/101 (35%), Positives = 58/101 (57%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDS-STIAE-H-SSQKNMYLRNL 110
MGV+ LW +L C + I L+ K +A+D+S W+ + + + H +S +N +L L
Sbjct: 1 MGVQGLWKLLE--CSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
F R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAA 99
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 142 (55.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICDS-STIAEHSSQ--KNMYLRNLFF 112
MGV+ LW +L P+ R + L +K +AID S W+ + + +N +L F
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDT-IEKRQQAQ 147
R LL L KPIFV +G P LK T I +R+Q +
Sbjct: 61 RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRE 96
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 123 (48.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 106 YLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRA--R 162
+LRNLFFR S+ +G+K +FV+EG+AP LK DT+ KR + + G S V R+ +
Sbjct: 9 HLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGVARTGRSSFK 68
Query: 163 NLFFRTSYLL-LLGVKPIFVLEGKAPVL 189
++ LL LGV P G+A +
Sbjct: 69 SILKECLQLLECLGV-PWVQAAGEAEAM 95
Score = 122 (48.0 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ-GRSAGRNVQAGSRARLKGL 220
RNLFFR S+ +G+K +FV+EG+AP LK DT+ KR + + G S V R+ K +
Sbjct: 11 RNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGVARTGRSSFKSI 70
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 135 (52.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 56 MGVKDLWGILTPICERKPI--WELQDKTIAIDLSAWICDS-STIAEHSSQ--KNMYLRNL 110
MGV LW +L KPI L+ K +A+D+S W+ + + + +N +L L
Sbjct: 1 MGVHGLWKLLEST--GKPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFR 167
F R LL ++P+FV +G AP+LK T+ R+Q + + + Q + F +
Sbjct: 59 FHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKLLQTFLK 115
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 135 (52.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 56 MGVKDLWGILTPICERKPIWE--LQDKTIAIDLSAWICDSST-IAE-H-SSQKNMYLRNL 110
MGV LW +L C + + L+ K +A+D+S W+ + + + H +S N +L L
Sbjct: 1 MGVHGLWKLLE--CSGRQVSPETLEGKILAVDISIWLNQALRGVRDCHGNSIGNAHLLTL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
F R LL ++PIFV +G AP+LK T+ KR+ + +A
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAA 99
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 128 (50.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 47/139 (33%), Positives = 65/139 (46%)
Query: 56 MGVKDLWGIL---TPICER-KPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNMYLRNL 110
MG+ L ++ P R K I + K IA+D S + S + H K L L
Sbjct: 1 MGITKLAHLIHFDAPASMRSKEIGDYSGKIIALDTSIVVNQFRSALPGHL--KLSPLAGL 58
Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAGRNVQAGSRARNLFFRTSY 170
F+RT L +KP+FVL+GK P K +EKR Q+ G S+ ++ GS R
Sbjct: 59 FYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGSAFNQECLRL-- 116
Query: 171 LLLLGVKPIFVLEGKAPVL 189
L L+GV P G+A L
Sbjct: 117 LHLMGV-PCIKAPGEAEAL 134
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 133 (51.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 133 (51.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 56 MGVKDLWGILTPICERKPIWELQDKTIAIDLSAWICD---SSTIAEHSSQKNMYLRNLFF 112
MGV LW I+ P + L K +AID S WI + + +S + ++ F
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFR 60
Query: 113 RTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSA 151
R LL G+ PIFV +G P LK TI R+Q + +++
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNS 99
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 93 SSTIAEHSSQKNMYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQGRSAG 152
SS + + +L+ +F+RT L+ G+KPI+V +G APVLK + KRQ A+ + A
Sbjct: 51 SSALTNQLGETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQ-ARRKEAK 109
Query: 153 RNVQ 156
N++
Sbjct: 110 ENLK 113
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 56 MGVK-DLWGILTPICERKPIWELQDKTIAIDLSAWICD-SSTIAEHSSQKNM-YLRNLFF 112
MGV W +L P + L+ + +A+DLS W+ S+ I S + +LR LFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 113 RT-SYLLLLGVKPIFVLEGKAPVLK 136
RT S +G P+FV++G+ LK
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLK 85
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 222 0.00096 112 3 11 22 0.36 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 577 (61 KB)
Total size of DFA: 159 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.25u 0.08s 16.33t Elapsed: 00:00:02
Total cpu time: 16.26u 0.08s 16.34t Elapsed: 00:00:02
Start: Thu Aug 15 11:18:13 2013 End: Thu Aug 15 11:18:15 2013