RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12967
         (222 letters)



>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 217

 Score = 66.3 bits (161), Expect = 5e-14
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 60  DLWGILTPICERKPIWELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNL 110
           D+  +     E   +     K IA+D    +          D + + +   +   +L  +
Sbjct: 2   DIGDLFER--EEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGI 59

Query: 111 FFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
            +R S ++ +G++P+FV +G+ P  K   IE+R++
Sbjct: 60  LYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKK 94


>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 216

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 57  GVKDLWGILTPIC----ERKPIWELQDKTIAIDLSAWIC--------DSSTIAEHSSQKN 104
           G++ L  ++  +         I     + +AID S  I             +     +  
Sbjct: 1   GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETT 60

Query: 105 MYLRNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 145
            +L  +F+RT  ++  G+KP++V +GK P LK   + KR +
Sbjct: 61  SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSE 101


>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 207

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 70  ERKPIWELQDKTIAIDLSAWI---------CDSSTIAEHSSQKNMYLRNLFFRTSYLLLL 120
                 +L+ K +AID    +          D S +     +       +F++T +LL  
Sbjct: 11  NIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLEN 70

Query: 121 GVKPIFVLEGKAPVLKHDTIEKRQQ 145
            + PI+V +G+ P LK  T + R++
Sbjct: 71  DITPIWVFDGEPPKLKEKTRKVRRE 95



 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 162 RNLFFRTSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQ 199
             +F++T +LL   + PI+V +G+ P LK  T + R++
Sbjct: 58  NGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRRE 95


>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 219

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 65  LTPICERKPI--WELQDKTIAIDLSAWIC---------DSSTIAEHSSQKNMYLRNLFFR 113
           +  I  RK I    L  K IAID    I          D + + +   +   +L  LF+R
Sbjct: 4   IGEIIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYR 63

Query: 114 TSYLLLLGVKPIFVLEGKAPVLKHDTIEKRQQAQ 147
           T  L+  G+KP++V +G+ P  K   +EKR++A+
Sbjct: 64  TINLMEAGIKPVYVFDGEPPEFKKKELEKRREAR 97


>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
          Pyrococcus horikoshii [TaxId: 53953]}
          Length = 173

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 18 PIWELQDKTIAIDLSAWICDSSTI 41
           I+E+  K   I  SA++ +++ +
Sbjct: 2  AIYEINGKKPRIHPSAFVDENAVV 25



 Score = 27.3 bits (59), Expect = 1.2
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 73 PIWELQDKTIAIDLSAWICDSSTI 96
           I+E+  K   I  SA++ +++ +
Sbjct: 2  AIYEINGKKPRIHPSAFVDENAVV 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 767,702
Number of extensions: 31921
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 16
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)