Query psy12968
Match_columns 402
No_of_seqs 189 out of 405
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 15:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 3.8E-45 1.3E-49 322.0 7.3 125 70-196 1-127 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 1.4E-38 4.9E-43 276.3 7.9 119 69-196 5-128 (131)
3 2yqr_A KIAA0907 protein; struc 99.9 5.9E-26 2E-30 194.9 8.1 99 69-182 10-111 (119)
4 2xa6_A KH domain-containing\,R 98.9 1.4E-09 4.9E-14 78.2 4.9 38 12-50 3-40 (41)
5 2opv_A KHSRP protein; KH domai 98.6 9.3E-08 3.2E-12 76.0 8.0 72 70-171 13-84 (85)
6 1dtj_A RNA-binding neurooncolo 98.6 1.3E-07 4.5E-12 73.0 6.8 74 69-171 1-74 (76)
7 3k6t_A Female germline-specifi 98.5 3.9E-08 1.3E-12 76.1 3.7 41 12-52 3-45 (60)
8 4dnn_A Protein quaking, MQKI, 98.5 3.2E-08 1.1E-12 75.5 1.0 39 15-53 3-46 (56)
9 1x4m_A FAR upstream element bi 98.4 2.9E-07 1E-11 74.6 5.4 75 67-171 11-85 (94)
10 1we8_A Tudor and KH domain con 98.3 6.8E-07 2.3E-11 73.7 5.9 73 69-171 13-85 (104)
11 2p2r_A Poly(RC)-binding protei 98.3 5.5E-07 1.9E-11 69.9 4.9 71 69-171 3-73 (76)
12 1zzk_A Heterogeneous nuclear r 98.3 9.6E-07 3.3E-11 69.7 6.0 69 70-170 6-74 (82)
13 1ec6_A RNA-binding protein NOV 98.3 4.5E-07 1.5E-11 72.2 3.9 73 70-171 2-74 (87)
14 1x4n_A FAR upstream element bi 98.3 7E-07 2.4E-11 72.1 4.8 70 69-170 13-82 (92)
15 1wvn_A Poly(RC)-binding protei 98.3 1E-06 3.4E-11 69.4 5.6 71 70-172 5-75 (82)
16 2axy_A Poly(RC)-binding protei 98.2 8.1E-07 2.8E-11 68.9 4.5 69 68-170 2-70 (73)
17 2hh3_A KH-type splicing regula 98.2 8.9E-07 3E-11 73.9 4.9 67 72-170 12-78 (106)
18 2hh2_A KH-type splicing regula 98.2 1.4E-06 4.8E-11 72.3 5.9 71 72-171 8-78 (107)
19 2dgr_A Ring finger and KH doma 98.2 7.8E-07 2.7E-11 71.4 3.5 38 70-113 9-46 (83)
20 2cte_A Vigilin; K homology typ 98.1 3.4E-06 1.1E-10 68.4 5.7 68 69-170 15-82 (94)
21 1j5k_A Heterogeneous nuclear r 98.1 2E-06 7E-11 68.9 4.4 70 69-170 12-81 (89)
22 1vig_A Vigilin; RNA-binding pr 98.0 8.7E-06 3E-10 62.9 5.9 65 72-170 6-70 (71)
23 2ctl_A Vigilin; K homology typ 97.9 1.3E-05 4.5E-10 65.6 5.9 69 71-170 17-85 (97)
24 2ctm_A Vigilin; K homology typ 97.9 1.2E-05 4.1E-10 65.7 5.4 68 70-170 16-83 (95)
25 2ctk_A Vigilin; K homology typ 97.9 1.2E-05 4.1E-10 66.7 5.5 69 69-171 15-83 (104)
26 3krm_A Insulin-like growth fac 97.9 1.3E-05 4.5E-10 69.0 5.3 73 69-171 83-155 (163)
27 2jvz_A KH type-splicing, FAR u 97.8 4.5E-05 1.5E-09 65.3 7.3 70 72-171 3-72 (164)
28 2jzx_A Poly(RC)-binding protei 97.7 2.3E-05 8E-10 67.3 4.6 42 67-114 1-42 (160)
29 1j4w_A FUSE binding protein; s 97.6 6.1E-05 2.1E-09 65.8 5.7 71 71-170 104-174 (174)
30 1j4w_A FUSE binding protein; s 97.6 4.4E-05 1.5E-09 66.7 4.3 68 72-171 4-71 (174)
31 2jzx_A Poly(RC)-binding protei 97.5 6E-05 2E-09 64.7 3.4 70 70-170 88-157 (160)
32 2jvz_A KH type-splicing, FAR u 97.5 8.5E-05 2.9E-09 63.6 4.2 66 73-170 93-158 (164)
33 2anr_A Neuro-oncological ventr 97.4 9E-05 3.1E-09 64.8 4.4 73 70-171 5-77 (178)
34 2anr_A Neuro-oncological ventr 97.4 8.1E-05 2.8E-09 65.1 3.5 72 70-171 103-174 (178)
35 2ctj_A Vigilin; K homology typ 97.4 8.3E-05 2.9E-09 61.0 2.9 67 70-170 16-83 (95)
36 3krm_A Insulin-like growth fac 97.3 0.00025 8.5E-09 61.0 5.2 38 72-115 4-41 (163)
37 1tua_A Hypothetical protein AP 97.1 0.00073 2.5E-08 62.0 6.1 29 86-114 107-135 (191)
38 2cpq_A FragIle X mental retard 96.8 0.00088 3E-08 55.3 4.0 64 70-169 14-78 (91)
39 2e3u_A PH-DIM2P, hypothetical 96.7 0.00097 3.3E-08 62.2 4.1 52 87-171 139-190 (219)
40 3u1k_A Polyribonucleotide nucl 96.6 0.00097 3.3E-08 70.6 3.9 63 71-170 567-629 (630)
41 2qnd_A FMR1 protein; KH domain 95.3 0.018 6.3E-07 49.7 5.0 37 73-115 69-106 (144)
42 3n89_A Defective in GERM LINE 94.1 0.066 2.3E-06 53.8 6.3 49 62-116 21-71 (376)
43 2e3u_A PH-DIM2P, hypothetical 93.8 0.012 4.2E-07 54.7 0.4 36 72-113 35-70 (219)
44 4aid_A Polyribonucleotide nucl 92.9 0.023 7.9E-07 61.3 0.8 35 73-113 572-606 (726)
45 2qnd_A FMR1 protein; KH domain 91.6 0.039 1.3E-06 47.7 0.4 31 71-107 4-34 (144)
46 2ctf_A Vigilin; K homology typ 90.8 0.1 3.6E-06 42.9 2.2 37 71-113 27-64 (102)
47 1tua_A Hypothetical protein AP 88.9 0.098 3.4E-06 48.0 0.7 39 70-114 3-41 (191)
48 3v69_A Protein filia; RNA-bind 86.5 0.15 5E-06 45.3 0.3 29 85-113 64-92 (140)
49 3cdi_A Polynucleotide phosphor 72.8 0.73 2.5E-05 49.7 0.0 34 86-119 569-602 (723)
50 3n89_A Defective in GERM LINE 70.1 2.8 9.7E-05 42.1 3.5 62 87-170 196-259 (376)
51 1e3p_A Guanosine pentaphosphat 62.9 0.85 2.9E-05 49.5 -2.0 37 75-117 602-638 (757)
52 2cxc_A NUSA; transcription ter 56.7 2.7 9.1E-05 37.0 0.4 30 86-115 45-74 (144)
53 2z0s_A Probable exosome comple 43.5 48 0.0016 30.5 6.6 68 86-181 157-225 (235)
54 2ba0_A Archeal exosome RNA bin 34.6 57 0.002 30.0 5.7 75 86-190 145-220 (229)
55 3iev_A GTP-binding protein ERA 33.7 11 0.00039 35.1 0.8 41 68-113 237-285 (308)
56 1wjw_A Phosphoacetylglucosamin 32.7 1.4E+02 0.0048 24.4 7.2 48 97-166 45-93 (112)
57 3isp_A HTH-type transcriptiona 29.4 24 0.00083 30.9 2.1 21 97-117 39-59 (303)
58 1k0r_A NUSA; two component arr 29.2 14 0.00047 37.1 0.5 72 36-115 207-279 (366)
59 2asb_A Transcription elongatio 24.7 18 0.00061 34.6 0.4 74 34-115 82-156 (251)
60 3hhg_A Transcriptional regulat 22.3 36 0.0012 29.5 1.9 23 97-119 36-58 (306)
61 3fzv_A Probable transcriptiona 21.7 23 0.0008 30.7 0.5 24 97-120 37-62 (306)
62 3szp_A Transcriptional regulat 21.0 44 0.0015 28.5 2.1 21 97-117 34-54 (291)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=3.8e-45 Score=322.04 Aligned_cols=125 Identities=38% Similarity=0.671 Sum_probs=119.4
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
++++|||||+++||+|||||+||||||+|+|+||++|||||.||||||+||+++|+.++ |+|+|+|++|||||+|+++
T Consensus 1 ~~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~--g~~~~~~~~epLHV~Isa~ 78 (140)
T 2bl5_A 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVE 78 (140)
T ss_dssp CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTST--TSHHHHTTTSCCEEEEEEC
T ss_pred CceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCccccccccccc--CCCCccccCCCcEEEEEec
Confidence 37899999999999999999999999999999999999999999999999999998765 6899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHhhcCCCCCC
Q psy12968 150 APPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGYVHHEPRPQ 196 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~P--d~~DelKq~QLrELA~iNg~~~P~ 196 (402)
+++++|+++|++|+++|++||+| +++|++|++||+|||++||++++.
T Consensus 79 ~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~ 127 (140)
T 2bl5_A 79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDA 127 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGG
T ss_pred CchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCC
Confidence 99999999999999999999987 679999999999999999999983
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=1.4e-38 Score=276.27 Aligned_cols=119 Identities=33% Similarity=0.565 Sum_probs=107.5
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.|+++||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++++++ +.+++ .|+|++|||||+|++
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~---~~~~~-~~~~~~e~lhV~I~a 80 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG---RKDGQ-MLPGEDEPLHALVTA 80 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS---SCCCC-CSCCSSCCEEEEEEE
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc---ccccc-cccccCCCeEEEEEE
Confidence 58999999999999999999999999999999999999999999999999998765 33344 478999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhhc-----CCCccHHHHHHHHHHHHhhcCCCCCC
Q psy12968 149 LAPPAEAHARIAYALSELRKYI-----IPDVNDEIRQEQFREMGYVHHEPRPQ 196 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL-----~Pd~~DelKq~QLrELA~iNg~~~P~ 196 (402)
++ ..+|++|++.|++|| +|+++|++|++||+|||++||++++.
T Consensus 81 ~~-----~e~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~ 128 (131)
T 1k1g_A 81 NT-----MENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 128 (131)
T ss_dssp SS-----HHHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC--
T ss_pred CC-----HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCc
Confidence 87 457899999999999 57899999999999999999999984
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=5.9e-26 Score=194.91 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=83.5
Q ss_pred ceEEEEEEccCC-CCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEE
Q psy12968 69 ILVKVKVLVPVK-EHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVS 147 (402)
Q Consensus 69 vkl~eKI~IPvk-eyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIs 147 (402)
.++++|||||++ .||+|||||+||||+|+|+|+||++|||||.|||+||++.... .-++++|+|||+|+
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~----------~~~e~~e~l~V~I~ 79 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA----------SGREAFEPMYIYIS 79 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT----------TSSCCSSBCEEEEE
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc----------cccccCCCcEEEEE
Confidence 478999999999 6999999999999999999999999999999999999884321 12468999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHhhcCCC--ccHHHHHHH
Q psy12968 148 ALAPPAEAHARIAYALSELRKYIIPD--VNDEIRQEQ 182 (402)
Q Consensus 148 A~~~~~~A~~rLa~AveeIeklL~Pd--~~DelKq~Q 182 (402)
+.+. ..|++|++.|+.||.+. ..+.+|++|
T Consensus 80 a~~~-----e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 80 HPKP-----EGLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp ESSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCH-----HHHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 9884 56889999999999863 344455544
No 4
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=78.25 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhhh
Q psy12968 12 DTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMA 50 (402)
Q Consensus 12 ~~~~~~YL~ELl~Ek~~L~~~~F~ha~rLLd~EI~RV~~ 50 (402)
++..++||.||++||+.|+ ++|.||.|||++||+|+++
T Consensus 3 m~~~~kyLpeL~aEk~sLd-Psf~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 3 MEPENKYLPELMAEKDSLD-PSFTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp --CHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccC-chHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999 8999999999999999986
No 5
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.63 E-value=9.3e-08 Score=75.95 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=56.0
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
....+|.||. +++|+|||++|.|+|+||++|||+|.|...|+.. .+.+-+|.|++
T Consensus 13 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~------------------~~~er~v~I~G- 67 (85)
T 2opv_A 13 GTVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN------------------TNVDKPLRIIG- 67 (85)
T ss_dssp SEEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS------------------TTSCEEEEEEE-
T ss_pred CEEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC------------------CCCceEEEEEe-
Confidence 4566889996 6899999999999999999999999998754410 12456799998
Q ss_pred CChhHHHHHHHHHHHHHHhhcC
Q psy12968 150 APPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~ 171 (402)
++ ..+.+|++.|+.++.
T Consensus 68 ~~-----~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 68 DP-----YKVQQACEMVMDILR 84 (85)
T ss_dssp CH-----HHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHHHhc
Confidence 43 456788888887763
No 6
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.55 E-value=1.3e-07 Score=72.96 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=55.9
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
++.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|...+... |+ ..+-.|.|++
T Consensus 1 ~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------------~~----~~~~~v~I~G 57 (76)
T 1dtj_A 1 MKELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------------PG----TRNRRVTITG 57 (76)
T ss_dssp CCEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------------TT----CCEEEEEEEE
T ss_pred CceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------------CC----CceeEEEEEe
Confidence 35677899996 6899999999999999999999999997543211 11 2345788887
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
. + ..+..|...|+.+|.
T Consensus 58 ~-~-----~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 58 S-P-----AATQAAQYLISQRVT 74 (76)
T ss_dssp S-H-----HHHHHHHHHHHHHCC
T ss_pred C-H-----HHHHHHHHHHHHHHh
Confidence 5 2 356788888888764
No 7
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=98.55 E-value=3.9e-08 Score=76.14 Aligned_cols=41 Identities=34% Similarity=0.439 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHhhhhcC
Q psy12968 12 DTKANEYVKTLLKEKMTLD--SDSHSYTLKLLDDEINKAMASN 52 (402)
Q Consensus 12 ~~~~~~YL~ELl~Ek~~L~--~~~F~ha~rLLd~EI~RV~~~~ 52 (402)
.+.+.+||++||+||..|. ++.|.|+.|||++||.||+...
T Consensus 3 ~~~~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~L 45 (60)
T 3k6t_A 3 HEATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVAL 45 (60)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999997 5799999999999999999863
No 8
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=98.45 E-value=3.2e-08 Score=75.51 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhCC--CC---ChHHHHHHHHHHHHhhhhcCC
Q psy12968 15 ANEYVKTLLKEKMTLD--SD---SHSYTLKLLDDEINKAMASNK 53 (402)
Q Consensus 15 ~~~YL~ELl~Ek~~L~--~~---~F~ha~rLLd~EI~RV~~~~~ 53 (402)
+.+||++||+||+.|. ++ .|.|+.||||+||.||+...+
T Consensus 3 ~~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lf 46 (56)
T 4dnn_A 3 TPDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMY 46 (56)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999987 33 799999999999999998643
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.39 E-value=2.9e-07 Score=74.57 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEE
Q psy12968 67 KPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQV 146 (402)
Q Consensus 67 kpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlI 146 (402)
.+-....+|.||. +++|+|||++|.|+|+|+++|||+|.|-..+... ...+-.|.|
T Consensus 11 ~p~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~------------------~~~~r~v~I 66 (94)
T 1x4m_A 11 GPGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN------------------TGADKPLRI 66 (94)
T ss_dssp CCCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS------------------SCSCEEEEE
T ss_pred CCCcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC------------------CCCceEEEE
Confidence 3567788999996 6999999999999999999999999997543210 124567899
Q ss_pred EecCChhHHHHHHHHHHHHHHhhcC
Q psy12968 147 SALAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 147 sA~~~~~~A~~rLa~AveeIeklL~ 171 (402)
++ ++ ..+.+|++.|+.+|.
T Consensus 67 ~G-~~-----~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 67 TG-DP-----YKVQQAKEMVLELIR 85 (94)
T ss_dssp EE-CT-----TTHHHHHHHHHHHHC
T ss_pred Ee-CH-----HHHHHHHHHHHHHHh
Confidence 98 43 246788888888875
No 10
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.32 E-value=6.8e-07 Score=73.66 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=56.2
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.....+|.||. +++|+|||++|.|+|+|+++|||+|.|-..... ...++-.|.|++
T Consensus 13 ap~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~------------------~~~~~~~V~I~G 68 (104)
T 1we8_A 13 TPVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG------------------TLLLSRLIKISG 68 (104)
T ss_dssp CEEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC------------------SSSSEEEEEEEE
T ss_pred CCEEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCC------------------CCCCcceEEEEc
Confidence 45677899996 699999999999999999999999999753210 012346788888
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
.. ..+++|++.|+.++.
T Consensus 69 ~~------~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 69 TQ------KEVAAAKHLILEKVS 85 (104)
T ss_dssp EH------HHHHHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHHHHh
Confidence 64 246788888888764
No 11
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.31 E-value=5.5e-07 Score=69.87 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=54.9
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.....+|.||. +++|.|||++|.++|+|+++|||+|.|... . + ...+=.|.|++
T Consensus 3 ~~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~-------------~----~~~~~~v~I~G 56 (76)
T 2p2r_A 3 QTTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANP---V-------------E----GSTDRQVTITG 56 (76)
T ss_dssp CCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCC---C-------------T----TCSEEEEEEEE
T ss_pred CceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCC---C-------------C----CCCeEEEEEEe
Confidence 45677899996 699999999999999999999999999741 0 1 12345788888
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
. + ..+..|...|+.+|.
T Consensus 57 ~-~-----~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 57 S-A-----ASISLAQYLINVRLS 73 (76)
T ss_dssp C-H-----HHHHHHHHHHHHHHT
T ss_pred C-H-----HHHHHHHHHHHHHHH
Confidence 5 2 456788888888775
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.29 E-value=9.6e-07 Score=69.65 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=52.0
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
+.+.+|.||. +++|+|||++|.++|+|+++|||+|.|... .++ ..+-.|.|++.
T Consensus 6 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----------------~~~----~~~~~v~I~G~ 59 (82)
T 1zzk_A 6 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP----------------LEG----SEDRIITITGT 59 (82)
T ss_dssp CEEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCT----------------TSC----SSEEEEEEEEC
T ss_pred eEEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCC----------------CCC----CCceEEEEEeC
Confidence 5677899996 689999999999999999999999999631 011 12356888884
Q ss_pred CChhHHHHHHHHHHHHHHhhc
Q psy12968 150 APPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL 170 (402)
+ ..+++|.+.|+.++
T Consensus 60 -~-----~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 60 -Q-----DQIQNAQYLLQNSV 74 (82)
T ss_dssp -H-----HHHHHHHHHHHHHH
T ss_pred -H-----HHHHHHHHHHHHHH
Confidence 2 34667777777665
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.28 E-value=4.5e-07 Score=72.16 Aligned_cols=73 Identities=29% Similarity=0.402 Sum_probs=54.0
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
+.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-..+... |+ ..+-.|.|++.
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------------~g----~~~r~v~I~G~ 58 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------------PG----TRNRRVTITGS 58 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------------TT----SCEEEEEEESS
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------------CC----CCceEEEEEcC
Confidence 5667889986 6999999999999999999999999997532211 11 13356777774
Q ss_pred CChhHHHHHHHHHHHHHHhhcC
Q psy12968 150 APPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~ 171 (402)
+ ..+..|...|..+|.
T Consensus 59 --~----~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 59 --P----AATQAAQYLISQRVT 74 (87)
T ss_dssp --H----HHHHHHHHHHHHHHH
T ss_pred --H----HHHHHHHHHHHHHHh
Confidence 2 356778888887764
No 14
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.27 E-value=7e-07 Score=72.10 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=53.4
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
-.+..+|.||. +++|+|||++|.|+|+|+++|||+|.|..... + ..+-.|.|++
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------------g----~~~r~v~I~G 66 (92)
T 1x4n_A 13 SVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------------G----LPERSCMLTG 66 (92)
T ss_dssp CCEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------------T----CSEEEEEEEE
T ss_pred CCEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC----------------C----CCccEEEEEe
Confidence 35677899996 69999999999999999999999999975321 0 1235688887
Q ss_pred cCChhHHHHHHHHHHHHHHhhc
Q psy12968 149 LAPPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL 170 (402)
. + ..+++|.+.|+.++
T Consensus 67 ~-~-----e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 67 T-P-----ESVQSAKRLLDQIV 82 (92)
T ss_dssp C-H-----HHHHHHHHHHHHHH
T ss_pred C-H-----HHHHHHHHHHHHHH
Confidence 5 2 34667887787765
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.27 E-value=1e-06 Score=69.41 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
..+.+|.||. +++|.|||++|.++|+|+++|||+|.|.... + ...+-.|.|++.
T Consensus 5 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------------~----~~~~r~v~I~G~ 58 (82)
T 1wvn_A 5 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV----------------E----GSSGRQVTITGS 58 (82)
T ss_dssp CEEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------------T----TCSEEEEEEEEC
T ss_pred cEEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC----------------C----CCCceEEEEEcC
Confidence 5677889996 6999999999999999999999999997420 0 123457888875
Q ss_pred CChhHHHHHHHHHHHHHHhhcCC
Q psy12968 150 APPAEAHARIAYALSELRKYIIP 172 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~P 172 (402)
. ..+.+|+..|+.++.-
T Consensus 59 ~------~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 59 A------ASISLAQYLINARLSS 75 (82)
T ss_dssp H------HHHHHHHHHHHHHTC-
T ss_pred H------HHHHHHHHHHHHHHHh
Confidence 2 4567889999888763
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.24 E-value=8.1e-07 Score=68.93 Aligned_cols=69 Identities=17% Similarity=0.353 Sum_probs=53.1
Q ss_pred CceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEE
Q psy12968 68 PILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVS 147 (402)
Q Consensus 68 pvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIs 147 (402)
+..+..++.||. +.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|+
T Consensus 2 ~~~~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~----------------------~er~v~I~ 53 (73)
T 2axy_A 2 NVTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC----------------------PERIITLA 53 (73)
T ss_dssp CCCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC----------------------SEEEEEEE
T ss_pred CceEEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC----------------------CcEEEEEE
Confidence 456778899985 79999999999999999999999999974321 12347777
Q ss_pred ecCChhHHHHHHHHHHHHHHhhc
Q psy12968 148 ALAPPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 148 A~~~~~~A~~rLa~AveeIeklL 170 (402)
+. + ..+.+|++.|.++|
T Consensus 54 G~-~-----~~v~~A~~~I~~~l 70 (73)
T 2axy_A 54 GP-T-----NAIFKAFAMIIDKL 70 (73)
T ss_dssp EC-H-----HHHHHHHHHHHHHH
T ss_pred eC-H-----HHHHHHHHHHHHHH
Confidence 75 2 34667888887765
No 17
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.23 E-value=8.9e-07 Score=73.93 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=50.7
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAP 151 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~ 151 (402)
+.+|.||. ++||+|||+.|.|+|+|+++|||+|.|...+. .+.+-.|.|+..
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~--------------------~~~er~V~I~G~-- 63 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------------------TGPEKIAHIMGP-- 63 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS--------------------SSSEEEEEEESS--
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCCC--------------------CCceeEEEEEeC--
Confidence 45788886 68999999999999999999999999974210 123457888864
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q psy12968 152 PAEAHARIAYALSELRKYI 170 (402)
Q Consensus 152 ~~~A~~rLa~AveeIeklL 170 (402)
...+++|.+.|++++
T Consensus 64 ----~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 64 ----PDRCEHAARIINDLL 78 (106)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 234667888887665
No 18
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.23 E-value=1.4e-06 Score=72.32 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=53.0
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAP 151 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~ 151 (402)
+.+|.||. ++||+|||++|.|+|+|+++|||+|.|..... +. ....+-.|.|++ +
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~---------------~~--~~~~~r~V~I~G-~- 62 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLP---------------PN--GDPNFKLFIIRG-S- 62 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC---------------TT--CCTTEEEEEEES-C-
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccC---------------CC--CCCCceEEEEEC-C-
Confidence 45788885 68999999999999999999999999975321 10 012335678877 3
Q ss_pred hhHHHHHHHHHHHHHHhhcC
Q psy12968 152 PAEAHARIAYALSELRKYII 171 (402)
Q Consensus 152 ~~~A~~rLa~AveeIeklL~ 171 (402)
...+++|++.|+++|.
T Consensus 63 ----~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 63 ----PQQIDHAKQLIEEKIE 78 (107)
T ss_dssp ----HHHHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 2457788888888775
No 19
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=7.8e-07 Score=71.43 Aligned_cols=38 Identities=34% Similarity=0.608 Sum_probs=34.1
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
.....|.||. +++|.|||++|.|+|+||++|||+|.|-
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~ 46 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTP 46 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECC
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEec
Confidence 5566788874 8999999999999999999999999995
No 20
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.11 E-value=3.4e-06 Score=68.45 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=51.3
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
-..+..|.||. .++|.|||++|.|+|+||++|||+|.|-..+. ++=.|.|++
T Consensus 15 ~~~t~~i~Ip~------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~----------------------~~~~V~I~G 66 (94)
T 2cte_A 15 TQASATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIPRPDD----------------------PSNQIKITG 66 (94)
T ss_dssp SCEEEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS----------------------SCCEEEEEE
T ss_pred CceEEEEEECh------HHeeeeECCCChhHHHHHHHHCCEEEeCCCCC----------------------CCCeEEEEE
Confidence 35778899996 58899999999999999999999999953210 123788888
Q ss_pred cCChhHHHHHHHHHHHHHHhhc
Q psy12968 149 LAPPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL 170 (402)
. . ..+.+|.+.|+.++
T Consensus 67 ~-~-----e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 67 T-K-----EGIEKARHEVLLIS 82 (94)
T ss_dssp C-H-----HHHHHHHHHHHHHH
T ss_pred C-H-----HHHHHHHHHHHHHh
Confidence 5 2 34567777777665
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.11 E-value=2e-06 Score=68.86 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=52.5
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.....+|.||. +++|+|||++|.|+|+|+++|||+|.|... .++ ..+=.|.|++
T Consensus 12 ~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~----------------~~~----~~~~~v~I~G 65 (89)
T 1j5k_A 12 PIITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP----------------LEG----SEDRIITITG 65 (89)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSC----------------CSS----SSEEEEEEEE
T ss_pred CeEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCC----------------CCC----CCccEEEEEc
Confidence 46778899996 699999999999999999999999999631 011 1234678877
Q ss_pred cCChhHHHHHHHHHHHHHHhhc
Q psy12968 149 LAPPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL 170 (402)
. + ..+.+|++.|++++
T Consensus 66 ~-~-----e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 66 T-Q-----DQIQNAQYLLQNSV 81 (89)
T ss_dssp E-H-----HHHHHHHHHHHHHH
T ss_pred C-H-----HHHHHHHHHHHHHH
Confidence 5 2 34567777777665
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.00 E-value=8.7e-06 Score=62.87 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=49.6
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAP 151 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~ 151 (402)
+..|.||. .++|.|||++|.++++|+++|||+|.|--.|. .+=-|.|++..
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~----------------------~~~~V~I~G~~- 56 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE----------------------KSNLIRIEGDP- 56 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS----------------------SSEEEEEEESS-
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC----------------------cccEEEEEcCH-
Confidence 45677885 68999999999999999999999999964332 01257888762
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q psy12968 152 PAEAHARIAYALSELRKYI 170 (402)
Q Consensus 152 ~~~A~~rLa~AveeIeklL 170 (402)
..+++|.++|+.++
T Consensus 57 -----~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 57 -----QGVQQAKRELLELA 70 (71)
T ss_dssp -----HHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHh
Confidence 23678888888765
No 23
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.92 E-value=1.3e-05 Score=65.59 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=49.4
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecC
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALA 150 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~ 150 (402)
.+..|.||. .++|+|||++|.++|+|+++|||+|.|--.|. ++ ..+--|.|++.
T Consensus 17 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~---------------~~----~~~~~V~I~G~- 70 (97)
T 2ctl_A 17 FKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD---------------GN----QPQDQITITGY- 70 (97)
T ss_dssp CEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT---------------CS----SCSSEEEEESC-
T ss_pred eeEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCC---------------CC----CCccEEEEEeC-
Confidence 466788885 68999999999999999999999999965432 11 12345888875
Q ss_pred ChhHHHHHHHHHHHHHHhhc
Q psy12968 151 PPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 151 ~~~~A~~rLa~AveeIeklL 170 (402)
. ..+..|.+.|+.++
T Consensus 71 ~-----e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 71 E-----KNTEAARDAILRIV 85 (97)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 2 23456666666553
No 24
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.91 E-value=1.2e-05 Score=65.73 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=50.2
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
..+..|.||. .++|+|||++|.|+|+|+++|||+|.|-..|+. .+=.|.|++.
T Consensus 16 ~vt~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~---------------------~~~~V~I~G~ 68 (95)
T 2ctm_A 16 MVSEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAP---------------------DPNCVTVTGL 68 (95)
T ss_dssp CCCEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCS---------------------CTTEEEEESC
T ss_pred cEEEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCCC---------------------CCcEEEEEcC
Confidence 4566788996 578999999999999999999999999544320 1235888875
Q ss_pred CChhHHHHHHHHHHHHHHhhc
Q psy12968 150 APPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL 170 (402)
. ..+++|.+.|+.++
T Consensus 69 ~------e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 69 P------ENVEEAIDHILNLE 83 (95)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHH
Confidence 2 23566777776654
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.91 E-value=1.2e-05 Score=66.69 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=52.9
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
+.....|.||. .++|+|||++|.|+|+|+++|||+|.|--.|+ ++=.|.|++
T Consensus 15 ap~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~----------------------~~~~V~I~G 66 (104)
T 2ctk_A 15 VPVTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL----------------------QSDIIAITG 66 (104)
T ss_dssp SCEEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT----------------------TCCEEEEEE
T ss_pred CCEEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC----------------------CcceEEEEc
Confidence 45677888885 68999999999999999999999999964332 011788887
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
.. ..+++|.+.|+.++.
T Consensus 67 ~~------e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 67 LA------ANLDRAKAGLLERVK 83 (104)
T ss_dssp CH------HHHHHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHHHHh
Confidence 52 346788888877653
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.87 E-value=1.3e-05 Score=69.03 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=55.1
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.....+|.||. +++|+|||++|.++|+|+++|||+|.|-..+. |. .++.-.|.|++
T Consensus 83 ~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~---------------~~---~~~~~~v~I~G 138 (163)
T 3krm_A 83 VKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT---------------PD---ENDQVIVKIIG 138 (163)
T ss_dssp CCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC---------------CC---TTSEEEEEEEE
T ss_pred CceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC---------------CC---CCCceEEEEEe
Confidence 45566889985 78999999999999999999999999975432 11 23445788888
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
. + ..++.|...|..+|.
T Consensus 139 ~-~-----~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 139 H-F-----YASQMAQRKIRDILA 155 (163)
T ss_dssp C-H-----HHHHHHHHHHHHHHH
T ss_pred C-H-----HHHHHHHHHHHHHHH
Confidence 4 2 346677888877764
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.79 E-value=4.5e-05 Score=65.30 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=51.8
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAP 151 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~ 151 (402)
..+|.||. +++|+|||++|.++|+|+++|||+|.|--.+. .+ ...+-.|.|++.
T Consensus 3 ~~~~~Vp~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~--------------~~----~~~~r~v~I~G~-- 56 (164)
T 2jvz_A 3 VQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGS--------------QN----TNVDKPLRIIGD-- 56 (164)
T ss_dssp EEEEEECT------TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT--------------SS----SSSCEEEEEEEC--
T ss_pred EEEEEech------hheeEEECCChHHHHHHHHHhCCeEEEecCCC--------------CC----CCCceEEEEEcC--
Confidence 56788986 57999999999999999999999999953221 01 123456788873
Q ss_pred hhHHHHHHHHHHHHHHhhcC
Q psy12968 152 PAEAHARIAYALSELRKYII 171 (402)
Q Consensus 152 ~~~A~~rLa~AveeIeklL~ 171 (402)
...+..|+..|..++.
T Consensus 57 ----~~~v~~A~~~I~~ii~ 72 (164)
T 2jvz_A 57 ----PYKVQQACEMVMDILR 72 (164)
T ss_dssp ----HHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 2456788888887775
No 28
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=2.3e-05 Score=67.28 Aligned_cols=42 Identities=26% Similarity=0.563 Sum_probs=37.5
Q ss_pred CCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEec
Q psy12968 67 KPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILG 114 (402)
Q Consensus 67 kpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRG 114 (402)
|+..+..++.||. +++|.|||++|.++|+|+++|||+|.|-.
T Consensus 1 ~~~~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~ 42 (160)
T 2jzx_A 1 KNVTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISE 42 (160)
T ss_dssp CCCEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEEC
T ss_pred CCccEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcC
Confidence 3466788999995 68999999999999999999999999975
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.63 E-value=6.1e-05 Score=65.79 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=51.5
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecC
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALA 150 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~ 150 (402)
...+|.||. +++|+|||++|.++|+|+++|||+|.|-.... + .. ...+=.|.|++.
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~---------------~-~~-~~~~~~v~I~G~- 159 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPP---------------P-NA-DPNMKLFTIRGT- 159 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT---------------T-TS-CTTEEEEEEECC-
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCC---------------C-CC-CCCceEEEEECC-
Confidence 466788884 68999999999999999999999999986421 0 00 112235777773
Q ss_pred ChhHHHHHHHHHHHHHHhhc
Q psy12968 151 PPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 151 ~~~~A~~rLa~AveeIeklL 170 (402)
...+..|...|+++|
T Consensus 160 -----~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 160 -----PQQIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhC
Confidence 245678888887764
No 30
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.58 E-value=4.4e-05 Score=66.66 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=50.0
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAP 151 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~ 151 (402)
+.+|.||. +++|+|||++|.++|+|+++|||+|.|-.. + + ...+-.|.|++.
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~------------~----~~~~r~v~I~G~-- 55 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----D------------G----TTPERIAQITGP-- 55 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC----T------------T----SCSEEEEEEEEC--
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC----C------------C----CCCccEEEEEeC--
Confidence 46788885 699999999999999999999999999631 0 0 012346778775
Q ss_pred hhHHHHHHHHHHHHHHhhcC
Q psy12968 152 PAEAHARIAYALSELRKYII 171 (402)
Q Consensus 152 ~~~A~~rLa~AveeIeklL~ 171 (402)
...+.+|++.|.++|.
T Consensus 56 ----~~~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 56 ----PDRAQHAAEIITDLLR 71 (174)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 1346677777776653
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.46 E-value=6e-05 Score=64.73 Aligned_cols=70 Identities=19% Similarity=0.430 Sum_probs=51.5
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
....+|.||. +++|+|||++|.++|+|+++|||+|.|.+.. .|+ ..+=.|.|++.
T Consensus 88 ~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~---------------~~~----~~~~~v~I~G~ 142 (160)
T 2jzx_A 88 PVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM---------------LPN----STERAITIAGI 142 (160)
T ss_dssp SEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC---------------STT----CCEEEEEEEEC
T ss_pred CEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC---------------CCC----CCceEEEEEcC
Confidence 3567788984 7999999999999999999999999997521 111 23356788873
Q ss_pred CChhHHHHHHHHHHHHHHhhc
Q psy12968 150 APPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL 170 (402)
+ ..+..|+..|.++|
T Consensus 143 -~-----~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 143 -P-----QSIIECVKQICVVM 157 (160)
T ss_dssp -H-----HHHHHHHHHHHHHH
T ss_pred -H-----HHHHHHHHHHHHHH
Confidence 2 34667777776654
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.45 E-value=8.5e-05 Score=63.57 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=48.3
Q ss_pred EEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCCh
Q psy12968 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPP 152 (402)
Q Consensus 73 eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~ 152 (402)
.+|.||. +++|+|||++|.++|+|+++|||+|.|-.... ...+=.|.|++. +
T Consensus 93 ~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~--------------------~~~~~~v~I~G~-~- 144 (164)
T 2jvz_A 93 IDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------------------TGPEKIAHIMGP-P- 144 (164)
T ss_dssp BCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT--------------------TSSEEEEEEESC-H-
T ss_pred EEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC--------------------CCCcEEEEEEcC-H-
Confidence 4566774 69999999999999999999999999974321 012346777764 2
Q ss_pred hHHHHHHHHHHHHHHhhc
Q psy12968 153 AEAHARIAYALSELRKYI 170 (402)
Q Consensus 153 ~~A~~rLa~AveeIeklL 170 (402)
..+..|...|+.+|
T Consensus 145 ----~~v~~A~~~I~~~i 158 (164)
T 2jvz_A 145 ----DRCEHAARIINDLL 158 (164)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 34667777777665
No 33
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.45 E-value=9e-05 Score=64.80 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=51.6
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
.++.+|.||. +++|+|||++|.++|+|+++|||+|.|-..+... |+ ..+=.|.|++.
T Consensus 5 ~~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-------------~~----~~er~v~I~G~ 61 (178)
T 2anr_A 5 QYFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-------------PG----TTERVCLIQGT 61 (178)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-------------TT----SSEEEEEEEEC
T ss_pred CEEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-------------CC----CCCceEEEEeC
Confidence 4567888986 6999999999999999999999999996432110 11 11224667764
Q ss_pred CChhHHHHHHHHHHHHHHhhcC
Q psy12968 150 APPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~ 171 (402)
...+.+|...|.+++.
T Consensus 62 ------~~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 62 ------IEALNAVHGFIAEKIR 77 (178)
T ss_dssp ------HHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHh
Confidence 1346677777777664
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.40 E-value=8.1e-05 Score=65.09 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=52.3
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
..+.+|.||. +++|+|||++|.++|+|+++|||+|.|-.... .+. ..+=.|.|++.
T Consensus 103 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~--------------~~~----~~~~~v~I~G~ 158 (178)
T 2anr_A 103 ANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--------------GIN----LQNRVVTVSGE 158 (178)
T ss_dssp GGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----------------------CCEEEEEEESS
T ss_pred ceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCC--------------CCC----CCceEEEEEcC
Confidence 3566889985 79999999999999999999999999975321 010 12235677664
Q ss_pred CChhHHHHHHHHHHHHHHhhcC
Q psy12968 150 APPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~ 171 (402)
. ..+.+|+..|.++|.
T Consensus 159 ~------~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 159 P------EQNRKAVELIIQKIQ 174 (178)
T ss_dssp H------HHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHH
Confidence 2 456788888887764
No 35
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.36 E-value=8.3e-05 Score=60.97 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=49.6
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhh-CceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEET-MTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ET-GcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
..+..|-||. .+++.||||+|.++|+|+++| ||+|.|--.|+ ..-.|.|.+
T Consensus 16 ~vt~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~----------------------~~~~V~I~G 67 (95)
T 2ctj_A 16 IAEVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS----------------------GSDTVVIRG 67 (95)
T ss_dssp SCCEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT----------------------TCCEEEEES
T ss_pred cEEEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC----------------------CcceEEEEc
Confidence 3455677885 588999999999999999999 99998854332 112588877
Q ss_pred cCChhHHHHHHHHHHHHHHhhc
Q psy12968 149 LAPPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL 170 (402)
.+ ..+++|.+.|+.++
T Consensus 68 ~~------~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 68 PS------SDVEKAKKQLLHLA 83 (95)
T ss_dssp CH------HHHHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHHHH
Confidence 53 25677888777765
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.29 E-value=0.00025 Score=61.01 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=33.7
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGK 115 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGK 115 (402)
+.+|.||. +++|.|||++|.++|+|+++|||+|.|--.
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCC
Confidence 45788885 689999999999999999999999999753
No 37
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.06 E-value=0.00073 Score=62.03 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=27.1
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEec
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILG 114 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRG 114 (402)
..+|||||+.|.|+|.||..|||+|.|-|
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~ 135 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE 135 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC
Confidence 36999999999999999999999999965
No 38
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.81 E-value=0.00088 Score=55.26 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=47.9
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCce-EEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTK-MSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcK-I~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.....+-||. .++|.+|||+|.++|+|+++|||+ |.|-- ++=.|.|.+
T Consensus 14 ~~i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------------------------ddG~V~I~g 62 (91)
T 2cpq_A 14 AFHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE-------------------------DTGTFRIYG 62 (91)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------------------------TTTEEEEEE
T ss_pred ceEEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------------------------CCCEEEEEE
Confidence 3455677875 689999999999999999999998 99931 123688988
Q ss_pred cCChhHHHHHHHHHHHHHHhh
Q psy12968 149 LAPPAEAHARIAYALSELRKY 169 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIekl 169 (402)
.+. ..+++|.+.|+.+
T Consensus 63 ~~~-----ea~~~A~~~I~~i 78 (91)
T 2cpq_A 63 ESA-----DAVKKARGFLEFV 78 (91)
T ss_dssp SSH-----HHHHHHHHHHSCC
T ss_pred CCH-----HHHHHHHHHHHhh
Confidence 663 3456777766543
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.72 E-value=0.00097 Score=62.16 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=41.2
Q ss_pred eeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHHH
Q psy12968 87 FVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSEL 166 (402)
Q Consensus 87 FVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~AveeI 166 (402)
.+|||||+.|.|+|.||..|||+|.|-| . .|.|.+. ...++.|...|
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-------------------------~--~v~i~G~------~~~i~~A~~~i 185 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-------------------------K--TVAIIGN------PIQIEIAKTAI 185 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-------------------------T--EEEEEEC------HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-------------------------e--EEEEEeC------HHHHHHHHHHH
Confidence 5999999999999999999999999953 1 1555553 34567788888
Q ss_pred HhhcC
Q psy12968 167 RKYII 171 (402)
Q Consensus 167 eklL~ 171 (402)
.+++.
T Consensus 186 ~~li~ 190 (219)
T 2e3u_A 186 EKLAR 190 (219)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88884
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.65 E-value=0.00097 Score=70.64 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=48.9
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecC
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALA 150 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~ 150 (402)
....|-||. ..||.||||+|.|+|.|+++|||+|.|-- +=.|.|.+.+
T Consensus 567 ~~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------------------------~G~V~I~~~~ 614 (630)
T 3u1k_A 567 VVETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVD--------------------------EETFSVFAPT 614 (630)
T ss_dssp EEEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECS--------------------------SSEEEEEESS
T ss_pred eEEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcC--------------------------CcEEEEEeCC
Confidence 345677885 68999999999999999999999998841 1368898876
Q ss_pred ChhHHHHHHHHHHHHHHhhc
Q psy12968 151 PPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 151 ~~~~A~~rLa~AveeIeklL 170 (402)
. ..+++|++.|+.|+
T Consensus 615 ~-----~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 615 P-----SAMHEARDFITEIC 629 (630)
T ss_dssp H-----HHHHHHHHHTTC--
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 45778888888765
No 41
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.30 E-value=0.018 Score=49.71 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=32.8
Q ss_pred EEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCc-eEEEecC
Q psy12968 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMT-KMSILGK 115 (402)
Q Consensus 73 eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGc-KI~IRGK 115 (402)
..|.||. +.+|++||-+|.++|.+++.||| +|.|.+.
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~ 106 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAE 106 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEE
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCC
Confidence 5677775 78999999999999999999998 9999864
No 42
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.13 E-value=0.066 Score=53.80 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=40.9
Q ss_pred ccccCCCceEEEEEEccCCCCCCCceeeEEeCCCc--hhHHHHHHhhCceEEEecCC
Q psy12968 62 DLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKG--NSLRRLQEETMTKMSILGKG 116 (402)
Q Consensus 62 D~~~ekpvkl~eKI~IPvkeyP~fNFVGrILGPRG--nTlKrLE~ETGcKI~IRGKG 116 (402)
.++..+.-+++.++.||. .|.+.|||.+| .++++|.+||||+|.+=-.+
T Consensus 21 ~~le~~~~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~ 71 (376)
T 3n89_A 21 PMIEINPTRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRS 71 (376)
T ss_dssp CCCCCCTTEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCC
T ss_pred eEEEecCCEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCc
Confidence 344556778899999995 57788999999 99999999999999996543
No 43
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=93.84 E-value=0.012 Score=54.71 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=32.5
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
..+|.||. +.+|.|+|+.|.|.|.|+++|||+|.|-
T Consensus 35 i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~ 70 (219)
T 2e3u_A 35 EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITID 70 (219)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEEC
T ss_pred EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEE
Confidence 45788885 7899999999999999999999999994
No 44
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=92.93 E-value=0.023 Score=61.25 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 73 eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
..+-||. ..+|.||||+|.|+|.|+++||++|.|-
T Consensus 572 ~~~~i~~------~ki~~vig~gg~~i~~i~~~tg~~idi~ 606 (726)
T 4aid_A 572 ETINIPT------DKIREVIGSGGKVIREIVATTGAKVDIN 606 (726)
T ss_dssp -----------------------------------------
T ss_pred EEEeCCH------HHHHhhcCCCchhHHHHHHHHCCceeEE
Confidence 3455665 5799999999999999999999999875
No 45
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=91.62 E-value=0.039 Score=47.69 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=27.9
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhC
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETM 107 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETG 107 (402)
.++++.||. .++|.+||++|.++|+|++++|
T Consensus 4 ~~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 4 FHEQFIVRE------DLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp CEEEEECCG------GGHHHHHCGGGHHHHHHHTSTT
T ss_pred eEEEEEECC------cceeeEECCChhHHHHHHHHHC
Confidence 467888885 6899999999999999999999
No 46
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.80 E-value=0.1 Score=42.94 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=30.8
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHh-hCceEEEe
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEE-TMTKMSIL 113 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~E-TGcKI~IR 113 (402)
.+.+|.||.+ |-+.|||++|.++|+|+++ ++|.|.+=
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp 64 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFT 64 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEEC
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeC
Confidence 6678899964 6678999999999999996 68888654
No 47
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=88.91 E-value=0.098 Score=47.95 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.1
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILG 114 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRG 114 (402)
+.+.+|.||. +-+|.|+|-.|.+.|.||+.+||+|.|-.
T Consensus 3 ~~~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 3 KPRIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CCCEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred CcceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 4456788885 78999999999999999999999999953
No 48
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=86.55 E-value=0.15 Score=45.34 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=27.3
Q ss_pred CceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 85 FNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 85 fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
-..+|.||||.|.-++.||..|+++|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 47899999999999999999999999996
No 49
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=72.83 E-value=0.73 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=0.0
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCC
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMR 119 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~k 119 (402)
..+|.+|||.|.|++.|.++||++|-|.+.|.+.
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~ 602 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 602 (723)
T ss_dssp ----------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCccEE
Confidence 5688999999999999999999999998765543
No 50
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=70.12 E-value=2.8 Score=42.09 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=39.2
Q ss_pred eeeEEeCCCc--hhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHH
Q psy12968 87 FVGKLLGPKG--NSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALS 164 (402)
Q Consensus 87 FVGrILGPRG--nTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Ave 164 (402)
++..|||-+| .++++|.++|||+|.+=..++..+. ..+.-.|.|++ . ...+..|.+
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~----------------~~~~~~ItItG--s----~e~V~~Ark 253 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET----------------RGNIYEIKVVG--N----IDNVLKARR 253 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC-------------------------CCEEEEEEES--C----HHHHHHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc----------------cCCceEEEEEe--C----HHHHHHHHH
Confidence 5778999998 5679999999999998654432110 01123466665 3 345667888
Q ss_pred HHHhhc
Q psy12968 165 ELRKYI 170 (402)
Q Consensus 165 eIeklL 170 (402)
.|..+|
T Consensus 254 ~I~~lL 259 (376)
T 3n89_A 254 YIMDLL 259 (376)
T ss_dssp HHHHTS
T ss_pred HHHhhC
Confidence 888876
No 51
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=62.88 E-value=0.85 Score=49.47 Aligned_cols=37 Identities=32% Similarity=0.690 Sum_probs=11.3
Q ss_pred EEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCC
Q psy12968 75 VLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 75 I~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS 117 (402)
+-||. ..+|.+|||+|.++|.|+++||++|.|-+.|.
T Consensus 602 ~~I~~------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~ 638 (757)
T 1e3p_A 602 VKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDGT 638 (757)
T ss_dssp C------------------------CTTCCCCCSCC-------
T ss_pred EEECh------HHeehcccccceeeehhhHhhCCEEEecCCce
Confidence 44775 46789999999999999999999998875443
No 52
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=56.72 E-value=2.7 Score=37.00 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=27.1
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecC
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGK 115 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGK 115 (402)
|.+|..+|++|..++.|++++|-||-|---
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 459999999999999999999999987763
No 53
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=43.55 E-value=48 Score=30.53 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=46.7
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHH
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSE 165 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Avee 165 (402)
+.+.+++|++|..+..|.+.++|+|.| |. + =-|+|.+.++.. ...+..|+..
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----N---------------------G~IWi~~~~~~~--~~~~~~ai~~ 208 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----N---------------------GRIHLECPNEDL--EAIAVMAIKI 208 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----T---------------------TEEEEECSCHHH--HHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----C---------------------CEEEEecCCHHH--HHHHHHHHHH
Confidence 678899999999999999999999988 43 1 248888876422 3456677777
Q ss_pred HHhhcCCCc-cHHHHHH
Q psy12968 166 LRKYIIPDV-NDEIRQE 181 (402)
Q Consensus 166 IeklL~Pd~-~DelKq~ 181 (402)
++.--...+ .|.+|+.
T Consensus 209 ~e~~~~~~~l~~~v~~~ 225 (235)
T 2z0s_A 209 IDEEAYTSGLTKRIIKF 225 (235)
T ss_dssp HHHCSCCTTCHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHH
Confidence 755433433 4555543
No 54
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=34.58 E-value=57 Score=30.03 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=47.2
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHH
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSE 165 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Avee 165 (402)
+.+.|++|+++.-++.|.+.++|.|.| |. + =-|+|.+.+. -...+..|+..
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~----N---------------------G~IWi~~~~~---~~~~~~~ai~~ 195 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ----N---------------------GLIWVNGDRR---KVSIAEEAIYL 195 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT----T---------------------SEEEEESCHH---HHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC----C---------------------cEEEEeCCch---hHHHHHHHHHH
Confidence 556689999999999999999999988 32 1 2478885432 33455667766
Q ss_pred HHhhcCCCcc-HHHHHHHHHHHHhhc
Q psy12968 166 LRKYIIPDVN-DEIRQEQFREMGYVH 190 (402)
Q Consensus 166 IeklL~Pd~~-DelKq~QLrELA~iN 190 (402)
++.--...+. |.+| +-|++.-.-+
T Consensus 196 ~e~~~~~~~l~~~v~-~~l~~~~~~~ 220 (229)
T 2ba0_A 196 IEQEAHTEGLTDRVA-EFIKRRKADV 220 (229)
T ss_dssp HHHCSCCSSHHHHHH-HHHHHHHHC-
T ss_pred HHhhhhhhhHHHHHH-HHHHHhcccc
Confidence 6543333333 4444 3366654433
No 55
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.73 E-value=11 Score=35.08 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=31.3
Q ss_pred CceEEEEEEccCCCCCCCceeeEEeCCCchhHHHH--------HHhhCceEEEe
Q psy12968 68 PILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRL--------QEETMTKMSIL 113 (402)
Q Consensus 68 pvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrL--------E~ETGcKI~IR 113 (402)
.+.+...|+|.-+ +-.|-|||-+|..+|+| |+.+||||.+.
T Consensus 237 ~~~i~a~i~ve~~-----~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDRE-----NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSG-----GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccC-----CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 4567778888766 45688999999999976 66677777654
No 56
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=32.72 E-value=1.4e+02 Score=24.42 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=29.3
Q ss_pred hhHHHHHHhh-CceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHHH
Q psy12968 97 NSLRRLQEET-MTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSEL 166 (402)
Q Consensus 97 nTlKrLE~ET-GcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~AveeI 166 (402)
.++..|+-+. +..|.||--|+ .| -|+|++++.+. ..+...++..++.|
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT--------------EP-------~irvy~Ea~~~-~~~~~~~~~~~~~i 93 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT--------------ED-------IVRVYAEANSQ-ESADRLAYEVSLLV 93 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS--------------SS-------SEEEEEEESSH-HHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC--------------cc-------EEEEEEEECCH-HHHHHHHHHHHHHH
Confidence 4566666664 56888997665 23 38999999763 44444444443333
No 57
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=29.43 E-value=24 Score=30.91 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=17.9
Q ss_pred hhHHHHHHhhCceEEEecCCC
Q psy12968 97 NSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGKGS 117 (402)
..+++||++.|+++++|++|-
T Consensus 39 ~~i~~LE~~lg~~Lf~R~~~~ 59 (303)
T 3isp_A 39 QRIKSLEQQVGQVLVVREKPC 59 (303)
T ss_dssp HHHHHHHHHHTSCCEECSSSC
T ss_pred HHHHHHHHHhCCeeEEcCCCC
Confidence 358999999999999998643
No 58
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=29.17 E-value=14 Score=37.13 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCccccccCCCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhh-CceEEEec
Q psy12968 36 YTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEET-MTKMSILG 114 (402)
Q Consensus 36 ha~rLLd~EI~RV~~~~~p~~~~~y~D~~~ekpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ET-GcKI~IRG 114 (402)
.+.+|+..||--|..+.- ....+-++.- ...||-|=- .-|+++-||..+|++|..++.|.++. |=||-|--
T Consensus 207 lv~~Lfe~EVPEI~dG~V-----eIk~iARepG--~RaKIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 207 LVRKLFSLEVPEIADGSV-----EIVAVAREAG--HRSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp HHHHHHHHHCHHHHTTSE-----EEEEEEEETT--TEEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhcchhhcCCeE-----EEEEEEecCC--CeEEEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 667888888877765420 0111112111 122444432 24899999999999999999999999 99999986
Q ss_pred C
Q psy12968 115 K 115 (402)
Q Consensus 115 K 115 (402)
-
T Consensus 279 ~ 279 (366)
T 1k0r_A 279 Y 279 (366)
T ss_dssp C
T ss_pred c
Confidence 3
No 59
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=24.66 E-value=18 Score=34.64 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCCccccccCCCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHH-HHhhCceEEE
Q psy12968 34 HSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRL-QEETMTKMSI 112 (402)
Q Consensus 34 F~ha~rLLd~EI~RV~~~~~p~~~~~y~D~~~ekpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrL-E~ETGcKI~I 112 (402)
-....+|+..||--|..+.- ....+-++.- ...||-|=- .-|+++-||..+|++|+.++.| ++-.|=||-|
T Consensus 82 p~lvk~Lfe~EVPEI~dG~v-----eI~~iaRe~G--~R~KiAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDI 153 (251)
T 2asb_A 82 PNLVRKLFSLEVPEIADGSV-----EIVAVAREAG--HRSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDI 153 (251)
T ss_dssp HHHHHHHHHHHCHHHHTTSE-----EEEEEEEETT--TEEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHhcchHhhcCeE-----EEEEEecCCC--ceeEEEEEc-CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEE
Confidence 34678999999888876421 0011112211 122444432 2389999999999999999999 7778999998
Q ss_pred ecC
Q psy12968 113 LGK 115 (402)
Q Consensus 113 RGK 115 (402)
--=
T Consensus 154 i~~ 156 (251)
T 2asb_A 154 IDY 156 (251)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
No 60
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=22.26 E-value=36 Score=29.53 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.5
Q ss_pred hhHHHHHHhhCceEEEecCCCCC
Q psy12968 97 NSLRRLQEETMTKMSILGKGSMR 119 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGKGS~k 119 (402)
..+|+||++.|+++++|.++.+.
T Consensus 36 ~~i~~LE~~lg~~Lf~R~~~~~~ 58 (306)
T 3hhg_A 36 RIVKRLEEKLGVNLLNRTTRQLS 58 (306)
T ss_dssp HHHHHHHHHHTSCCEETTSSSCE
T ss_pred HHHHHHHHHhCCeeEeecCCCee
Confidence 35899999999999999654443
No 61
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=21.73 E-value=23 Score=30.75 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=13.4
Q ss_pred hhHHHHHHhhCceEEEe-c-CCCCCC
Q psy12968 97 NSLRRLQEETMTKMSIL-G-KGSMRD 120 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IR-G-KGS~kd 120 (402)
..+|+||++.|+++++| + +|-.-.
T Consensus 37 ~~i~~LE~~lg~~Lf~R~~~~~~~lT 62 (306)
T 3fzv_A 37 TAVKGLEESFGVQLFIRHHAQGVSLT 62 (306)
T ss_dssp HHHHHHHHHC-CCCC---------CC
T ss_pred HHHHHHHHHhCCeeEeecCCCCceEC
Confidence 35899999999999999 3 555443
No 62
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=21.03 E-value=44 Score=28.48 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=17.6
Q ss_pred hhHHHHHHhhCceEEEecCCC
Q psy12968 97 NSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGKGS 117 (402)
..+|+||++.|+++.+|.++.
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~~ 54 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHARK 54 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETTE
T ss_pred HHHHHHHHHhCCceEeecCCC
Confidence 358999999999999997543
Done!