Query psy12968
Match_columns 402
No_of_seqs 189 out of 405
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 15:44:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bl5a1 d.51.1.1 (A:1-134) Qua 100.0 8.4E-47 6.1E-51 328.7 7.5 125 70-196 1-127 (134)
2 d1k1ga_ d.51.1.1 (A:) RNA spli 100.0 2E-43 1.5E-47 302.3 7.5 117 69-194 1-122 (122)
3 d1dtja_ d.51.1.1 (A:) Neuro-on 98.4 1.5E-07 1.1E-11 71.3 6.5 72 70-170 2-73 (74)
4 d1x4ma1 d.51.1.1 (A:8-88) Far 98.4 1.5E-07 1.1E-11 72.4 5.7 75 67-171 4-78 (81)
5 d1we8a_ d.51.1.1 (A:) Tudor an 98.3 4.3E-07 3.2E-11 72.7 6.8 75 67-171 11-85 (104)
6 d1zzka1 d.51.1.1 (A:11-85) HnR 98.3 4.5E-07 3.3E-11 68.2 6.3 37 71-113 4-40 (75)
7 d1x4na1 d.51.1.1 (A:8-86) Far 98.3 3.6E-07 2.6E-11 69.6 5.4 39 69-113 6-44 (79)
8 d1j4wa1 d.51.1.1 (A:1-74) Far 98.2 3.8E-07 2.8E-11 68.7 4.5 38 72-115 4-41 (74)
9 d1j4wa2 d.51.1.1 (A:104-174) F 98.2 7.1E-07 5.2E-11 66.9 5.8 36 73-114 3-38 (71)
10 d1wvna1 d.51.1.1 (A:5-74) Poly 98.1 1.5E-06 1.1E-10 65.1 5.6 37 71-113 2-38 (70)
11 d2ctea1 d.51.1.1 (A:8-88) Vigi 98.1 1.6E-06 1.2E-10 66.6 5.3 39 69-113 8-46 (81)
12 d2ctka1 d.51.1.1 (A:8-98) Vigi 98.1 1.5E-06 1.1E-10 68.0 5.1 69 69-171 8-76 (91)
13 d2axya1 d.51.1.1 (A:11-81) Pol 98.0 1.9E-06 1.4E-10 64.7 4.4 39 69-113 2-40 (71)
14 d2ctma1 d.51.1.1 (A:8-88) Vigi 98.0 3E-06 2.2E-10 65.0 5.6 38 70-113 9-46 (81)
15 d2cpqa1 d.51.1.1 (A:212-289) F 98.0 1.8E-06 1.3E-10 66.8 3.6 65 70-169 7-71 (78)
16 d1tuaa1 d.51.1.1 (A:1-84) Hypo 97.9 3.3E-06 2.4E-10 66.6 3.8 59 86-170 12-70 (84)
17 d2ctla1 d.51.1.1 (A:8-91) Vigi 97.9 5.6E-06 4.1E-10 63.6 5.0 37 71-113 10-46 (84)
18 d2ba0a3 d.51.1.1 (A:136-219) E 97.9 5.3E-06 3.9E-10 65.0 4.8 54 86-171 10-63 (84)
19 d1viga_ d.51.1.1 (A:) Vigilin 97.7 2E-05 1.5E-09 58.9 5.9 62 74-169 8-69 (71)
20 d2z0sa2 d.51.1.1 (A:148-234) E 97.7 1.2E-05 8.7E-10 64.0 4.6 54 86-170 10-63 (87)
21 d1tuaa2 d.51.1.1 (A:85-188) Hy 97.7 1.5E-05 1.1E-09 65.2 5.1 51 88-171 24-74 (104)
22 d1e3ha4 d.52.3.1 (A:579-632) P 97.6 3.6E-06 2.6E-10 61.8 -0.3 38 74-117 6-43 (54)
23 d2je6i3 d.51.1.1 (I:153-221) E 97.4 6E-06 4.4E-10 62.5 -1.1 27 86-112 10-36 (69)
24 d2ctfa1 d.51.1.1 (A:7-96) Vigi 97.3 0.00021 1.5E-08 55.9 6.9 38 69-112 19-57 (90)
25 d2ctja1 d.51.1.1 (A:8-89) Vigi 97.3 6.7E-05 4.9E-09 57.2 3.7 36 72-113 11-47 (82)
26 d2ja9a2 d.51.1.1 (A:152-236) R 71.5 0.93 6.8E-05 34.8 2.3 73 85-185 9-82 (85)
27 d2asba2 d.52.3.1 (A:184-262) T 45.7 2.9 0.00021 32.0 0.9 64 36-107 5-68 (79)
28 d1egaa2 d.52.3.1 (A:183-295) G 44.7 7.1 0.00052 30.8 3.2 41 68-113 46-94 (113)
29 d1wf3a2 d.52.3.1 (A:181-298) G 39.1 4.6 0.00033 32.4 1.1 81 12-113 6-95 (118)
30 d1ixca1 a.4.5.37 (A:1-89) LysR 26.6 8.9 0.00065 28.3 0.8 21 97-117 34-54 (89)
31 d1b9ma1 a.4.5.8 (A:-1-126) N-t 25.5 16 0.0012 27.9 2.2 21 97-117 51-71 (127)
32 d1wjwa_ d.129.2.1 (A:) Phospho 23.1 1.5E+02 0.011 22.7 9.1 76 72-169 17-96 (112)
33 d2esna1 a.4.5.37 (A:3-91) Prob 20.3 22 0.0016 25.9 2.0 19 97-115 39-57 (89)
No 1
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=100.00 E-value=8.4e-47 Score=328.66 Aligned_cols=125 Identities=38% Similarity=0.671 Sum_probs=118.9
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
|+++|||||+++||+|||||+||||||+|+|+||+||||||+||||||+|++++++.++ ++++|+|++|||||+|+++
T Consensus 1 kl~eKv~IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~--~~~~~~~~~epLHv~I~a~ 78 (134)
T d2bl5a1 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVE 78 (134)
T ss_dssp CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTST--TSHHHHTTTSCCEEEEEEC
T ss_pred CcceEEeCCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCcccccccc--CCCCCcCCCCCCEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999998876 5788999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHhhcCCCCCC
Q psy12968 150 APPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGYVHHEPRPQ 196 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL~P--d~~DelKq~QLrELA~iNg~~~P~ 196 (402)
+++.+|+.+|++|+++|+++|+| +++|++|++||+|||.|||+++..
T Consensus 79 ~~~~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNGt~r~~ 127 (134)
T d2bl5a1 79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDA 127 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGG
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999999999987 678999999999999999998763
No 2
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2e-43 Score=302.28 Aligned_cols=117 Identities=31% Similarity=0.527 Sum_probs=107.0
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
.|+++||+||+++||+|||||+||||||+|+|+||++|||||+||||||++|++++.. ....++|++|||||+|++
T Consensus 1 ~k~~~Ki~iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~----~~~~~~~~~epLHv~I~a 76 (122)
T d1k1ga_ 1 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK----DGQMLPGEDEPLHALVTA 76 (122)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSC----CCCCSCCSSCCEEEEEEE
T ss_pred CceeEEEecCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCCccccccccc----CCCCCCCCCCCceEEEec
Confidence 3789999999999999999999999999999999999999999999999999886542 456789999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhhc-----CCCccHHHHHHHHHHHHhhcCCCC
Q psy12968 149 LAPPAEAHARIAYALSELRKYI-----IPDVNDEIRQEQFREMGYVHHEPR 194 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL-----~Pd~~DelKq~QLrELA~iNg~~~ 194 (402)
++ ..++++|+++|+++| .|+++|++|++||+|||+||||+|
T Consensus 77 ~~-----~~~~~~A~~~i~~ll~~~~~~~e~~d~~k~~Ql~eLa~lnGt~r 122 (122)
T d1k1ga_ 77 NT-----MENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR 122 (122)
T ss_dssp SS-----HHHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC
T ss_pred CC-----hhhHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCcCC
Confidence 87 467889999999998 467899999999999999999986
No 3
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.44 E-value=1.5e-07 Score=71.26 Aligned_cols=72 Identities=28% Similarity=0.370 Sum_probs=51.6
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
+-..+|.||. +++|.|||.+|.++|+|+++|||+|.|...+... ++ ..+--|.|++.
T Consensus 2 k~~i~i~VP~------~~vg~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~-------------~~----~~~r~v~I~G~ 58 (74)
T d1dtja_ 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------------PG----TRNRRVTITGS 58 (74)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------------TT----CCEEEEEEEES
T ss_pred cEEEEEEeCH------HHcceeECCCChhHHHHHHHcCCEEEEccCCCCC-------------CC----CCceEEEEEeC
Confidence 4455788885 7999999999999999999999999996533211 11 12234777774
Q ss_pred CChhHHHHHHHHHHHHHHhhc
Q psy12968 150 APPAEAHARIAYALSELRKYI 170 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIeklL 170 (402)
. ..++.|...|.+.|
T Consensus 59 ~------~~v~~A~~~I~~~i 73 (74)
T d1dtja_ 59 P------AATQAAQYLISQRV 73 (74)
T ss_dssp H------HHHHHHHHHHHHHC
T ss_pred H------HHHHHHHHHHHHHc
Confidence 2 34778888887765
No 4
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.41 E-value=1.5e-07 Score=72.40 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=55.0
Q ss_pred CCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEE
Q psy12968 67 KPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQV 146 (402)
Q Consensus 67 kpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlI 146 (402)
.+-..+++|.||. +++|.|||++|.++|+|+++|||+|.|.-... .+. +.+=+|.|
T Consensus 4 ~~~~~~~~i~Vp~------~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~--------------~~~----~~~r~v~I 59 (81)
T d1x4ma1 4 GPGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGP--------------QNT----GADKPLRI 59 (81)
T ss_dssp CCCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC--------------CSS----CSCEEEEE
T ss_pred CCccEEEEEEECH------HHcCeeECCCCchHHHHHHHhCCeEEEccCCC--------------CCC----CCceEEEE
Confidence 4567888999994 79999999999999999999999999952110 011 12347888
Q ss_pred EecCChhHHHHHHHHHHHHHHhhcC
Q psy12968 147 SALAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 147 sA~~~~~~A~~rLa~AveeIeklL~ 171 (402)
++.- ..+++|.+.|+.+|.
T Consensus 60 ~G~~------~~v~~A~~~I~~~i~ 78 (81)
T d1x4ma1 60 TGDP------YKVQQAKEMVLELIR 78 (81)
T ss_dssp EECT------TTHHHHHHHHHHHHC
T ss_pred EeCH------HHHHHHHHHHHHHHH
Confidence 8753 246677777877664
No 5
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.32 E-value=4.3e-07 Score=72.72 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEE
Q psy12968 67 KPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQV 146 (402)
Q Consensus 67 kpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlI 146 (402)
+...+.++|.||. +++|+|||++|.++|+|+++|||+|.|.-.+... . ..+=-|.|
T Consensus 11 ~~~~v~~~i~IP~------~~vg~vIGk~G~~Ik~I~~~tga~I~i~~~~~~~-----------------~-~~~r~v~I 66 (104)
T d1we8a_ 11 ENTPVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----------------L-LLSRLIKI 66 (104)
T ss_dssp SSCEEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-----------------S-SSEEEEEE
T ss_pred CCCCEEEEEEECH------HHhcceECCCCcchHHHHHHcCCEEEECCCCCCC-----------------C-CCccEEEE
Confidence 3456778999996 6999999999999999999999999995322111 0 11124667
Q ss_pred EecCChhHHHHHHHHHHHHHHhhcC
Q psy12968 147 SALAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 147 sA~~~~~~A~~rLa~AveeIeklL~ 171 (402)
++. ...+.+|+.+|.++|.
T Consensus 67 ~G~------~~~v~~A~~~I~~~i~ 85 (104)
T d1we8a_ 67 SGT------QKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEE------HHHHHHHHHHHHHHHH
T ss_pred EeC------HHHHHHHHHHHHHHHh
Confidence 763 2346788888887773
No 6
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.31 E-value=4.5e-07 Score=68.17 Aligned_cols=37 Identities=19% Similarity=0.550 Sum_probs=33.9
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
.+.+|.||. +++|+|||.+|.++|+|+++|||+|.|.
T Consensus 4 ~t~~i~VP~------~~vg~iIG~~G~~I~~I~~~sga~I~i~ 40 (75)
T d1zzka1 4 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKID 40 (75)
T ss_dssp EEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEEC
T ss_pred EEEEEEECh------HhcCeeECCCCchHHHHHhhcCCeEEEc
Confidence 567899996 6899999999999999999999999994
No 7
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.29 E-value=3.6e-07 Score=69.62 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.9
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
..++.+|.||. +++|.|||++|.++++|+++|||+|.|.
T Consensus 6 ~~~t~~i~IP~------~~~g~iIG~~G~~i~~I~~~tg~~I~i~ 44 (79)
T d1x4na1 6 SVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIA 44 (79)
T ss_dssp CCEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEEC
T ss_pred CcEEEEEEECh------HhhcceECCCchhHHHHHHHhCCEEEEc
Confidence 46778899996 8999999999999999999999999995
No 8
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.24 E-value=3.8e-07 Score=68.72 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=33.2
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecC
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGK 115 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGK 115 (402)
..+|.||. +++|.|||.+|.|+|+|+++|||+|.|...
T Consensus 4 ~~~i~VP~------~~vg~iIGk~G~~I~~I~~~tga~I~i~~~ 41 (74)
T d1j4wa1 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD 41 (74)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC
T ss_pred EEEEEeCH------HHCCeeECCCCcHHHHHHHHcCCEEEeccC
Confidence 44677774 899999999999999999999999999753
No 9
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.23 E-value=7.1e-07 Score=66.93 Aligned_cols=36 Identities=14% Similarity=0.481 Sum_probs=31.6
Q ss_pred EEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEec
Q psy12968 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILG 114 (402)
Q Consensus 73 eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRG 114 (402)
..+.||. +++|+|||.+|+++|+|+++|||+|.|-.
T Consensus 3 ~~~~IP~------~~vg~IIGk~G~~Ik~I~~~sga~I~i~~ 38 (71)
T d1j4wa2 3 FNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQR 38 (71)
T ss_dssp EEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEEC
T ss_pred EEEEECh------HhcceEECCCCcChHHHHhhcCcEEEEee
Confidence 3567774 78999999999999999999999999953
No 10
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.12 E-value=1.5e-06 Score=65.12 Aligned_cols=37 Identities=16% Similarity=0.487 Sum_probs=33.8
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
.+.+|.||. +++|.|||++|.++|+|+++|||+|.|-
T Consensus 2 ~T~~i~VP~------~~vg~iIGk~G~~I~~I~~~tga~I~i~ 38 (70)
T d1wvna1 2 TTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIA 38 (70)
T ss_dssp EEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred eEEEEEECh------HhcceeECCCChHHHHHHHHcCcEEEEc
Confidence 467788985 7999999999999999999999999994
No 11
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=1.6e-06 Score=66.57 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=34.3
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
...+..|.||. .|+|.|||++|.++++|+++|||+|.|-
T Consensus 8 ~~~t~~i~Ip~------~~~~~iIG~~G~~i~~I~~~tg~~I~~p 46 (81)
T d2ctea1 8 TQASATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIP 46 (81)
T ss_dssp SCEEEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCC
T ss_pred CceEEEEEECH------HHHhhccCCCChhHHHHHHHhCCEEEEC
Confidence 34677888885 5899999999999999999999999994
No 12
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=1.5e-06 Score=68.02 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=51.7
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSA 148 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA 148 (402)
+.++..|.||. +|+|.|||++|.++++|+++|||+|.|=..|+ .+--|.|++
T Consensus 8 ~~vt~~i~Vp~------~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~~----------------------~~~~v~I~G 59 (91)
T d2ctka1 8 VPVTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL----------------------QSDIIAITG 59 (91)
T ss_dssp SCEEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT----------------------TCCEEEEEE
T ss_pred CCEEEEEEECH------HHHhHhcCCCchhHHHHHHHhCCEEEECCCCC----------------------CcceEEEEC
Confidence 46778888884 79999999999999999999999999943211 112477777
Q ss_pred cCChhHHHHHHHHHHHHHHhhcC
Q psy12968 149 LAPPAEAHARIAYALSELRKYII 171 (402)
Q Consensus 149 ~~~~~~A~~rLa~AveeIeklL~ 171 (402)
. ...++.|.+.|.+++.
T Consensus 60 ~------~~~V~~A~~~I~~~v~ 76 (91)
T d2ctka1 60 L------AANLDRAKAGLLERVK 76 (91)
T ss_dssp C------HHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHH
Confidence 4 2346677777877664
No 13
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.02 E-value=1.9e-06 Score=64.65 Aligned_cols=39 Identities=26% Similarity=0.593 Sum_probs=35.3
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
+.++.+|.||. +++|.|||.+|.++|+|+++|||+|.|-
T Consensus 2 ~~vt~~i~vp~------~~~g~IIGk~G~~I~~I~~~tga~I~i~ 40 (71)
T d2axya1 2 VTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINIS 40 (71)
T ss_dssp CCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred ccEEEEEEECH------HHcCeEECCCChhHHHHHHHhCCEEEEc
Confidence 45677899995 7999999999999999999999999984
No 14
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.02 E-value=3e-06 Score=65.01 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=33.2
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
..++.|.||. +|+|.|||++|.++++|+++|||+|.|-
T Consensus 9 ~~t~~i~Vp~------~~~~~iIG~~G~~i~~I~~~tg~~I~~p 46 (81)
T d2ctma1 9 MVSEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFP 46 (81)
T ss_dssp CCCEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECC
T ss_pred CEEEEEEECH------HHHhhccCCCCccHHHHHHHhCCEEEeC
Confidence 3456788885 6889999999999999999999999984
No 15
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.98 E-value=1.8e-06 Score=66.81 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=49.6
Q ss_pred eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL 149 (402)
Q Consensus 70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~ 149 (402)
..++.|-||. ++||+|||++|.|+|+|+++|||+|.|-.. +.=.|.|.+.
T Consensus 7 ~~t~~i~Ip~------~~ig~vIG~gG~~I~~I~~~tGa~i~i~~~------------------------~~g~v~I~g~ 56 (78)
T d2cpqa1 7 AFHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE------------------------DTGTFRIYGE 56 (78)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEET------------------------TTTEEEEEES
T ss_pred CceEEEEECH------HHHHHHcCCChHHHHHHHHhcCcEEEEecC------------------------CCceEEEEEC
Confidence 4577888884 899999999999999999999999987420 1125888886
Q ss_pred CChhHHHHHHHHHHHHHHhh
Q psy12968 150 APPAEAHARIAYALSELRKY 169 (402)
Q Consensus 150 ~~~~~A~~rLa~AveeIekl 169 (402)
++ ..+++|.+.|+.+
T Consensus 57 ~~-----eav~~A~~~Ie~~ 71 (78)
T d2cpqa1 57 SA-----DAVKKARGFLEFV 71 (78)
T ss_dssp SH-----HHHHHHHHHHSCC
T ss_pred CH-----HHHHHHHHHHHHh
Confidence 63 4466777777644
No 16
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=97.90 E-value=3.3e-06 Score=66.58 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=42.5
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHH
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSE 165 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Avee 165 (402)
+.+|+||||+|.|+|+||++|||+|.|-. +.-.|.|.+.+.. .....+.+|.+.
T Consensus 12 ~~ig~vIG~gG~~Ik~i~~~tg~~I~Id~-------------------------d~g~v~i~~~~~~-~~~~a~~~a~~i 65 (84)
T d1tuaa1 12 ERLGAVIGPRGEVKAEIMRRTGTVITVDT-------------------------ENSMVIVEPEAEG-IPPVNLMKAAEV 65 (84)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTEEEEEET-------------------------TTTEEEEEESSTT-SCHHHHHHHHHH
T ss_pred HHcCeeecCCchhHHHHHHHHCCEEEEEc-------------------------CCCeEEEecCCcc-ccHHHHHHHHHH
Confidence 79999999999999999999999999931 2246677765532 123345566666
Q ss_pred HHhhc
Q psy12968 166 LRKYI 170 (402)
Q Consensus 166 IeklL 170 (402)
|+.+.
T Consensus 66 I~aI~ 70 (84)
T d1tuaa1 66 VKAIS 70 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 17
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.89 E-value=5.6e-06 Score=63.60 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.2
Q ss_pred EEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEe
Q psy12968 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL 113 (402)
Q Consensus 71 l~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IR 113 (402)
....|.||. .|+|.|||.+|.++|+|+++|||+|.|-
T Consensus 10 ~~~~i~Vp~------~~~~~iIG~~G~~i~~I~~~t~~~I~~~ 46 (84)
T d2ctla1 10 FKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFP 46 (84)
T ss_dssp CEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECC
T ss_pred EEEEEEECH------HHHhhhcCCCchhHHHHHHHhCCEEEEC
Confidence 344677885 5899999999999999999999999994
No 18
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.88 E-value=5.3e-06 Score=65.05 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=42.4
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHH
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSE 165 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Avee 165 (402)
+++|+|||++|.++|+|+++|||+|.|- .+ =-|.|+++. ..++.|.+.
T Consensus 10 ~~ig~IIG~gG~~I~~I~~~tg~~I~i~-----~~---------------------g~v~I~G~~------e~v~~A~~~ 57 (84)
T d2ba0a3 10 ARVPRVIGKKGSMIKLLKSELDVQIVVG-----QN---------------------GLIWVNGDR------RKVSIAEEA 57 (84)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEEC-----TT---------------------SEEEEESCH------HHHHHHHHH
T ss_pred hhcceeeCCcHHHHHHHHHHHCCEEEEC-----CC---------------------CEEEEEeCH------HHHHHHHHH
Confidence 7899999999999999999999999991 00 137777632 346778888
Q ss_pred HHhhcC
Q psy12968 166 LRKYII 171 (402)
Q Consensus 166 IeklL~ 171 (402)
|+.+..
T Consensus 58 I~~i~~ 63 (84)
T d2ba0a3 58 IYLIEQ 63 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877774
No 19
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.75 E-value=2e-05 Score=58.95 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=45.3
Q ss_pred EEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChh
Q psy12968 74 KVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPA 153 (402)
Q Consensus 74 KI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~ 153 (402)
.|-||. .|+|+|||++|.++++|+++|||+|.|-..++ +.=-|.|++.-
T Consensus 8 ei~V~~------~~~~~iIG~~G~~i~~I~~~tg~~I~i~~~~~----------------------~~~~v~I~G~~--- 56 (71)
T d1viga_ 8 EINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE----------------------KSNLIRIEGDP--- 56 (71)
T ss_dssp EEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS----------------------SSEEEEEEESS---
T ss_pred EEEECH------HHhcccCCCCCchHHHHHHHhCCEEEeCCCCC----------------------CCCEEEEECCH---
Confidence 466663 79999999999999999999999999943221 11137777752
Q ss_pred HHHHHHHHHHHHHHhh
Q psy12968 154 EAHARIAYALSELRKY 169 (402)
Q Consensus 154 ~A~~rLa~AveeIekl 169 (402)
..++.|.+.|.+|
T Consensus 57 ---~~v~~A~~~I~~i 69 (71)
T d1viga_ 57 ---QGVQQAKRELLEL 69 (71)
T ss_dssp ---HHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHH
Confidence 3466777777665
No 20
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=97.73 E-value=1.2e-05 Score=63.96 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=41.7
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHH
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSE 165 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Avee 165 (402)
|.||+||||+|.++|+|+++|||+|.|-= +=-|+|.+.+. ..+..|.+.
T Consensus 10 ~ki~~vIG~gG~~ik~i~~~t~~~I~I~d--------------------------~G~V~I~g~~~-----~~~~~A~~~ 58 (87)
T d2z0sa2 10 AKVPRVIGRKMSMLKTLEEKTECKIFVAR--------------------------NGRIHLECPNE-----DLEAIAVMA 58 (87)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEET--------------------------TTEEEEECSCH-----HHHHHHHHH
T ss_pred hhcceeECCCCcHHHHHHHHHCCEEEECC--------------------------CcEEEEEeCCH-----HHHHHHHHH
Confidence 88999999999999999999999999920 01488988763 345566666
Q ss_pred HHhhc
Q psy12968 166 LRKYI 170 (402)
Q Consensus 166 IeklL 170 (402)
|+.+.
T Consensus 59 I~~I~ 63 (87)
T d2z0sa2 59 IKIID 63 (87)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 21
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=97.72 E-value=1.5e-05 Score=65.19 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=40.8
Q ss_pred eeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHHHH
Q psy12968 88 VGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELR 167 (402)
Q Consensus 88 VGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~AveeIe 167 (402)
+|+||||.|.|.|.||+.|||+|.|-|. .|.|.++ ...++.|.+.|+
T Consensus 24 ~GrIIG~gGktik~Ie~~Tg~~I~I~d~---------------------------~v~iig~------~e~i~~A~~~Ie 70 (104)
T d1tuaa2 24 KGRIIGEGGRARRTIEEMTDTYINVGEY---------------------------EVAIIGD------YERAMAAKQAIE 70 (104)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECSS---------------------------EEEEEEE------HHHHHHHHHHHH
T ss_pred hcceeCCCcHHHHHHHHHHCCeEEEeCC---------------------------eEEEEEC------chhHHHHHHHHH
Confidence 7889999999999999999999999431 3555553 235778888899
Q ss_pred hhcC
Q psy12968 168 KYII 171 (402)
Q Consensus 168 klL~ 171 (402)
.|+.
T Consensus 71 ~li~ 74 (104)
T d1tuaa2 71 MLAE 74 (104)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9885
No 22
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=97.60 E-value=3.6e-06 Score=61.76 Aligned_cols=38 Identities=32% Similarity=0.673 Sum_probs=10.0
Q ss_pred EEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCC
Q psy12968 74 KVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 74 KI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS 117 (402)
.+.||. +.+|.||||+|.++|.|+++|||+|.|--.|.
T Consensus 6 ~i~Ip~------~kig~vIG~GG~~Ik~I~~~tga~I~i~ddg~ 43 (54)
T d1e3ha4 6 TVKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDGT 43 (54)
T ss_dssp ---------------------------CHHHHSCCCC-------
T ss_pred EEEeCH------HHeeEEECCccHHHHHHHHHHCCEEEEeCCeE
Confidence 455664 68999999999999999999999999965444
No 23
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=97.43 E-value=6e-06 Score=62.50 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=23.5
Q ss_pred ceeeEEeCCCchhHHHHHHhhCceEEE
Q psy12968 86 NFVGKLLGPKGNSLRRLQEETMTKMSI 112 (402)
Q Consensus 86 NFVGrILGPRGnTlKrLE~ETGcKI~I 112 (402)
+.+|+|||++|.|+|+||++|||+|.|
T Consensus 10 ~~ig~iIGkgG~~Ik~i~~~tg~~I~i 36 (69)
T d2je6i3 10 VKVPRVIGKNKSMYETLTSKSGCSIFV 36 (69)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEE
T ss_pred hhccceECCchhHHHHHHHHHCCEEEE
Confidence 899999999999999999999999999
No 24
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.34 E-value=0.00021 Score=55.86 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=32.8
Q ss_pred ceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHh-hCceEEE
Q psy12968 69 ILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEE-TMTKMSI 112 (402)
Q Consensus 69 vkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~E-TGcKI~I 112 (402)
-..+..|.||.+ |.+.|||++|.|+++|+++ +||+|.+
T Consensus 19 ~~~t~~v~VP~~------~h~~iIG~~G~~I~~i~~~~~~v~I~~ 57 (90)
T d2ctfa1 19 SFTVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEF 57 (90)
T ss_dssp CCEEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEE
T ss_pred CcEEEEEEcCHH------HHhhcCCCCchhHHHHHHHcCCcEEee
Confidence 356788999975 6689999999999999999 5899988
No 25
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.32 E-value=6.7e-05 Score=57.17 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=30.7
Q ss_pred EEEEEccCCCCCCCceeeEEeCCCchhHHHHHHh-hCceEEEe
Q psy12968 72 KVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEE-TMTKMSIL 113 (402)
Q Consensus 72 ~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~E-TGcKI~IR 113 (402)
+..|.||. +|+|+|||++|.++++|+++ |||+|.+-
T Consensus 11 t~~i~Vp~------~~~~~iIGk~G~~I~~I~~~~~~~~I~~~ 47 (82)
T d2ctja1 11 EVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFP 47 (82)
T ss_dssp CEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECC
T ss_pred EEEEEECH------HHHhhcCCCCCccHHHHHHHcCCcEEEEe
Confidence 45677773 89999999999999999877 69999874
No 26
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=71.46 E-value=0.93 Score=34.75 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=47.9
Q ss_pred CceeeEEeCCCch-hHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHH
Q psy12968 85 FNFVGKLLGPKGN-SLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYAL 163 (402)
Q Consensus 85 fNFVGrILGPRGn-TlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa~Av 163 (402)
.|++-+|||+.+. -++.|.+.|+|.|.|== - =-|+|.+++... ...+..|+
T Consensus 9 ~~~~rrll~~~~~~ml~~l~~~~~~eI~VG~------------------N--------GrIWi~~~~~~~--~i~i~~aI 60 (85)
T d2ja9a2 9 LNFARQLLFNNDFPLLKVLAAHTKFEVAIGL------------------N--------GKIWVKCEELSN--TLACYRTI 60 (85)
T ss_dssp HHHHHHHHHCTTCCHHHHHHTTCCCEEEEET------------------T--------TEEEEECSSHHH--HHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHhhcCceEEEec------------------C--------cEEEEECCCHHH--HHHHHHHH
Confidence 4789999999998 68999999999999831 0 148898876422 23345666
Q ss_pred HHHHhhcCCCccHHHHHHHHHH
Q psy12968 164 SELRKYIIPDVNDEIRQEQFRE 185 (402)
Q Consensus 164 eeIeklL~Pd~~DelKq~QLrE 185 (402)
..+++-..+.+..+.=++.|.|
T Consensus 61 ~~~e~~~~~~~~~~~vk~~l~e 82 (85)
T d2ja9a2 61 MECCQKNDTAAFKDIAKRQFKE 82 (85)
T ss_dssp HHHHHHCCGGGHHHHHHHHTTT
T ss_pred HHHHHhCCHhHHHHHHHHHHHH
Confidence 6665544444444443444444
No 27
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.73 E-value=2.9 Score=31.98 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCccccccCCCceEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhC
Q psy12968 36 YTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETM 107 (402)
Q Consensus 36 ha~rLLd~EI~RV~~~~~p~~~~~y~D~~~ekpvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETG 107 (402)
...+||.+||--|..+.- ....+-++.- ...||-|= -.-|+++-||-++|++|+-++.+-+|.+
T Consensus 5 ~v~~Lfe~EVPEI~~G~v-----eI~~iaR~pG--~RtKVAV~-s~~~~vDpvGacvG~~GsRI~~I~~eL~ 68 (79)
T d2asba2 5 LVRKLFSLEVPEIADGSV-----EIVAVAREAG--HRSKIAVR-SNVAGLNAKGACIGPMGQRVRNVMSELS 68 (79)
T ss_dssp HHHHHHHHHCHHHHTTSE-----EEEEEEEETT--TEEEEEEE-ESSTTCCHHHHHHCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhhCccccCCeE-----EEEEeeccCC--ceeEEEEE-ecCCCCCceeEEECCCccHHHHHHHHhC
Confidence 568899999988886521 0111112211 12355552 3458899999999999999999999885
No 28
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.71 E-value=7.1 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=32.2
Q ss_pred CceEEEEEEccCCCCCCCceeeEEeCCCchhHHHH--------HHhhCceEEEe
Q psy12968 68 PILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRL--------QEETMTKMSIL 113 (402)
Q Consensus 68 pvkl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrL--------E~ETGcKI~IR 113 (402)
.+++...|+++-+ +--+-|||-+|.++|+| |+-+||+|.+.
T Consensus 46 ~~~I~a~I~V~~~-----sqk~IiIGk~G~~ik~I~~~ar~~le~~~~~kV~L~ 94 (113)
T d1egaa2 46 GYDINGLILVERE-----GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE 94 (113)
T ss_dssp SEEEEEEEEESSH-----HHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred eEEEEEEEEECCc-----chhhhhhcccchHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4678889999765 66789999999999987 55567777654
No 29
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=39.08 E-value=4.6 Score=32.38 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHHhhCC-CCChHHHHHHHHHHHHhhhhcCCCCCCCCccccccCCCceEEEEEEccCCCCCCCceeeE
Q psy12968 12 DTKANEYVKTLLKEKMTLD-SDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGK 90 (402)
Q Consensus 12 ~~~~~~YL~ELl~Ek~~L~-~~~F~ha~rLLd~EI~RV~~~~~p~~~~~y~D~~~ekpvkl~eKI~IPvkeyP~fNFVGr 90 (402)
.+....++.|++.|+--.. .+..||.... +|+. |.+ ..+..+++...|+++-+ +--+-
T Consensus 6 Dq~~~~~i~EiIREkil~~l~~EiPY~~~v---~ie~------------~~e-~~~~~l~I~~~I~V~~~-----sqK~I 64 (118)
T d1wf3a2 6 DQTFGEWVAEILREEAMKRLWHEVPYAVAT---KVEE------------VAE-RENGVLYIKAILYVERP-----SQKAI 64 (118)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCTTHHHHCEE---EEEE------------EEE-ETTTEEEEEEEEEESSH-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCceEEE---EEEE------------eee-cCCceEEEEEEEEeCcc-----chhhh
Confidence 4556678888888875433 2566665411 1111 100 01123678888999876 56688
Q ss_pred EeCCCchhHHHH--------HHhhCceEEEe
Q psy12968 91 LLGPKGNSLRRL--------QEETMTKMSIL 113 (402)
Q Consensus 91 ILGPRGnTlKrL--------E~ETGcKI~IR 113 (402)
|||.+|.++|+| |+-+||+|.+.
T Consensus 65 iIGk~G~~ik~Ig~~aR~~le~~~~~kV~L~ 95 (118)
T d1wf3a2 65 VIGEGGRKIKEIGQATRKQLEALLGKKVYLD 95 (118)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred hhccCchhHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999965 77778888653
No 30
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=26.64 E-value=8.9 Score=28.30 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=14.5
Q ss_pred hhHHHHHHhhCceEEEecCCC
Q psy12968 97 NSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGKGS 117 (402)
..+|+||++.||++++|..+.
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~~ 54 (89)
T d1ixca1 34 RQMQALEADLGVVLLERSHRG 54 (89)
T ss_dssp HHHHHHHHHHTSCCBC-----
T ss_pred HHHHHHHhcCCceeeEecCCc
Confidence 358999999999999996433
No 31
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=25.53 E-value=16 Score=27.90 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=17.5
Q ss_pred hhHHHHHHhhCceEEEecCCC
Q psy12968 97 NSLRRLQEETMTKMSILGKGS 117 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGKGS 117 (402)
..+++||++.||++.+|-+|-
T Consensus 51 ~~i~~lE~~lg~~Lf~R~~~g 71 (127)
T d1b9ma1 51 DAINEMNQLSEHILVERATGG 71 (127)
T ss_dssp HHHHHHHHHHTSCCEEECCCC
T ss_pred HHHHHHHHHhCCeEEEeecCC
Confidence 458999999999999996543
No 32
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.15 E-value=1.5e+02 Score=22.70 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=41.3
Q ss_pred EEEEEccCCC-CCCCceeeEEeCCCch--hHHHHHHhh-CceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEE
Q psy12968 72 KVKVLVPVKE-HPRFNFVGKLLGPKGN--SLRRLQEET-MTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVS 147 (402)
Q Consensus 72 ~eKI~IPvke-yP~fNFVGrILGPRGn--TlKrLE~ET-GcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIs 147 (402)
..+|.|+-+. +-...-.-+++-|.+. .+..+.... ++++.||--|+ . .-++|+|+
T Consensus 17 linv~V~dk~~~~~~~~~~~~~~~~~lq~~Idgi~~~~~~grvlIRpSGT--------------E-------p~iRi~vE 75 (112)
T d1wjwa_ 17 QLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRPSGT--------------E-------DIVRVYAE 75 (112)
T ss_dssp EEEECCCCSSSSTTSCCCCSSSSSTTHHHHHHHHHHHSSSEEEEEECSSS--------------S-------SSEEEEEE
T ss_pred eeeeEcCCcccccchHHHHHhhCcHHHHHHHHHHHhhcCceEEEEEeCCC--------------C-------ceEEEEEe
Confidence 3456565432 2222234556667664 344555544 58999997665 1 23899999
Q ss_pred ecCChhHHHHHHHHHHHHHHhh
Q psy12968 148 ALAPPAEAHARIAYALSELRKY 169 (402)
Q Consensus 148 A~~~~~~A~~rLa~AveeIekl 169 (402)
+.+ ...+..-+......|+++
T Consensus 76 a~~-~~~~~~i~~~i~~lv~~~ 96 (112)
T d1wjwa_ 76 ANS-QESADRLAYEVSLLVFQL 96 (112)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHHHH
Confidence 976 334433333333334333
No 33
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.29 E-value=22 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.4
Q ss_pred hhHHHHHHhhCceEEEecC
Q psy12968 97 NSLRRLQEETMTKMSILGK 115 (402)
Q Consensus 97 nTlKrLE~ETGcKI~IRGK 115 (402)
..+++||++.||++.+|..
T Consensus 39 ~~l~~lE~~~g~~Lf~R~~ 57 (89)
T d2esna1 39 HALGRLRQGLDDELFLRQG 57 (89)
T ss_dssp HHHHHHHHHHTSCCEEEET
T ss_pred HHHHHHHhcCCceeEEECC
Confidence 3589999999999999953
Done!