RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12968
(402 letters)
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 146 bits (369), Expect = 2e-43
Identities = 47/121 (38%), Positives = 78/121 (64%), Gaps = 4/121 (3%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
++ K+ VPVKE+P FNFVG++LGP+G + ++L+ ET K+ + GKGSMRD+ KEE+ R
Sbjct: 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR-- 59
Query: 131 GDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGY 188
G P HL EDLHV ++ A ++ A+ E++K ++P + D +++ + E+
Sbjct: 60 GKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAI 119
Query: 189 V 189
+
Sbjct: 120 L 120
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 129 bits (325), Expect = 3e-37
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V KV++P E+P NFVG L+GP+GN+L+ +++E K+ I GKGS+++ +
Sbjct: 3 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGR----K 58
Query: 131 GDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYV 189
E LH V+A A + P+ +++R+ Q RE+ +
Sbjct: 59 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARL 117
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 44.0 bits (104), Expect = 7e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGD 132
V++ VP N VG +LG G +L QE T ++ I KG ++ + G
Sbjct: 5 VEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS 58
Query: 133 PKNAHLVEDL 142
P + L
Sbjct: 59 PAATQAAQYL 68
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 40.2 bits (94), Expect = 2e-05
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 65 REKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKE 124
+++ ++ + VP VG ++G G + R+Q+E+ K+ I E
Sbjct: 2 QQQRSVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQI---APDSGGLPE 52
Query: 125 EELRKEGDPKNAHLVEDL 142
G P++ + L
Sbjct: 53 RSCMLTGTPESVQSAKRL 70
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 37.6 bits (87), Expect = 2e-04
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 68 PILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEEL 127
P ++++P + G ++G G ++++LQE KM ++ G ++ ++ L
Sbjct: 5 PGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADKPL 57
Query: 128 RKEGDPKNAHLVEDL 142
R GDP +++
Sbjct: 58 RITGDPYKVQQAKEM 72
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 37.0 bits (86), Expect = 3e-04
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRK 129
+ V++ + K H L+G G ++ R++++ + I D K +R
Sbjct: 4 MDYVEINIDHKFHRH------LIGKSGANINRIKDQYKVSVRI-----PPDSEKSNLIRI 52
Query: 130 EGDPKNAHLVEDL 142
EGDP+ +
Sbjct: 53 EGDPQGVQQAKRE 65
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 37.1 bits (86), Expect = 4e-04
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
K+ V V K HP+ ++G KG + +++ E + K ++++
Sbjct: 10 FKLSVTVDPKYHPK------IIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITIT 61
Query: 131 GDPKNAHLVEDL 142
G KN D
Sbjct: 62 GYEKNTEAARDA 73
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 36.2 bits (84), Expect = 7e-04
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V +P + H ++G G L+ L+ +T TK+ I R +++
Sbjct: 10 ASATVAIPKEHH------RFVIGKNGEKLQDLELKTATKIQI-----PRPDDPSNQIKIT 58
Query: 131 GDPKNAHLVEDL 142
G +
Sbjct: 59 GTKEGIEKARHE 70
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 34.9 bits (80), Expect = 0.002
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
+ +V +P + G ++G G +++++ E+ + I + S++ +
Sbjct: 4 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKI---DEPLEGSEDRIITIT 54
Query: 131 GDPKNAHLVEDL 142
G + L
Sbjct: 55 GTQDQIQNAQYL 66
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 34.8 bits (80), Expect = 0.002
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 73 VKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGD 132
+ V +P VG ++G G ++++Q + ++ + E + G
Sbjct: 5 IDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQF---KPDDGTTPERIAQITGP 55
Query: 133 PKNAHLVEDL 142
P A ++
Sbjct: 56 PDRAQHAAEI 65
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 34.0 bits (78), Expect = 0.002
Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
++ +P N +G ++G +G ++ +++ + ++ I + S ++
Sbjct: 2 TTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTIT 52
Query: 131 GDPKNAHLVEDL 142
G + L + L
Sbjct: 53 GSAASISLAQYL 64
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 34.4 bits (79), Expect = 0.003
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V ++V VP H ++G KG+ +R++ +E + + + + +
Sbjct: 10 VTIEVEVPFDLH------RYVIGQKGSGIRKMMDEFEVNIHV-----PAPELQSDIIAIT 58
Query: 131 GDPKNAHLVEDL 142
G N +
Sbjct: 59 GLAANLDRAKAG 70
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 32.9 bits (75), Expect = 0.009
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V V + + H R ++G +G ++R++ +E + +
Sbjct: 10 VSEDVPLDHRVHAR------IIGARGKAIRKIMDEFKVDIRF----PQSGAPDPNCVTVT 59
Query: 131 GDPKNAHLVEDL 142
G P+N D
Sbjct: 60 GLPENVEEAIDH 71
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 33.4 bits (76), Expect = 0.009
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V ++ VP VG+++G G ++R + + + K++ + ++
Sbjct: 15 VFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEGTL-LLSRLIKIS 67
Query: 131 GDPKNAHLVEDL 142
G K + L
Sbjct: 68 GTQKEVAAAKHL 79
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 31.3 bits (71), Expect = 0.022
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEE 126
V +++G + L ++ + + G +
Sbjct: 10 VKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRF 50
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 30.9 bits (70), Expect = 0.043
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGK-GSMRDRSKEEELRKEGDPKNAHLVEDL 142
+G ++GP+G + T T +++ + + + E P N ++
Sbjct: 12 ERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAE----GIPPVNLMKAAEV 65
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 30.0 bits (68), Expect = 0.055
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 88 VGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEE 126
+G+++GPK + ++QE+T +++I G++ + +
Sbjct: 14 IGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGP 52
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 30.5 bits (69), Expect = 0.065
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 86 NFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
V +++G K + L+ L+E+T K+ + G + E+L
Sbjct: 10 AKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAI 54
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 30.2 bits (68), Expect = 0.085
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 71 VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEE-TMTKMSILGKGSMRDRSKEEELRK 129
+V+V +P K H L+G KG +R + EE + + S + +
Sbjct: 10 AEVEVSIPAKLH------NSLIGTKGRLIRSIMEECGGVHIHF-----PVEGSGSDTVVI 58
Query: 130 EGDPKNAHLVEDL 142
G + +
Sbjct: 59 RGPSSDVEKAKKQ 71
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 29.7 bits (67), Expect = 0.17
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 88 VGKLLGPKGNSLRRLQEETMTKMSILGKG 116
G+++G G + R ++E T T +++
Sbjct: 24 KGRIIGEGGRARRTIEEMTDTYINVGEYE 52
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 28.7 bits (64), Expect = 0.31
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 63 LFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSI 112
++ + V P H ++G KG +L ++ ++ M K+ I
Sbjct: 13 VYAKANSFTVSSVAAPSWLHRF------IIGKKGQNLAKITQQ-MPKVHI 55
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 27.9 bits (62), Expect = 0.49
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 86 NFVGKLLGPKGNSLRRLQEETMTKMSIL 113
+ +G +G G+++++ ++ L
Sbjct: 17 DLMGLAIGTHGSNIQQARKVPGVTAIEL 44
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 29.3 bits (64), Expect = 0.82
Identities = 5/63 (7%), Positives = 10/63 (15%), Gaps = 3/63 (4%)
Query: 164 SELRKYIIPDVNDEIRQEQFREMGY---VHHEPRPQMRHPRPPPHMVAARPAPGLLAPPR 220
+ + V + Q+ + P P P
Sbjct: 312 LNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSH 371
Query: 221 MQH 223
Sbjct: 372 GMD 374
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS
coronavirus [TaxId: 227859]}
Length = 168
Score = 28.5 bits (63), Expect = 1.1
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 12/115 (10%)
Query: 183 FREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAAS 242
+ + P + + G + H P++ AA
Sbjct: 53 NKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAY 112
Query: 243 RGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTAS------YDPAMYD 291
+ + P SAG++ + + +T + D A+Y+
Sbjct: 113 E----NFNSQDILLA--PLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYE 161
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 195
Score = 28.1 bits (62), Expect = 1.5
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 18/125 (14%)
Query: 177 EIRQEQFREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPH-------- 228
E++ + + P+P P+ AAR A PP + +
Sbjct: 69 EVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVF 128
Query: 229 -MVRPPHPPPPPAASRGKVLSILDRARAAMEKPAP-SAGVYEYEDPHAAHAYYETTASYD 286
++ PP + R + A+ P V E++D T A+
Sbjct: 129 SLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDD--------GTPATMS 180
Query: 287 PAMYD 291
D
Sbjct: 181 QVAKD 185
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 28.4 bits (62), Expect = 1.8
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 171 IPDVNDEIRQEQFREMGY---VHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRM-QH 223
+ + + +++G V E R P +P P + +H
Sbjct: 349 VMSMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEIT--RAPLLGEH 403
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 27.2 bits (59), Expect = 4.2
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 7/50 (14%)
Query: 173 DVNDEIRQEQFREMGY---VHHEPRPQMRHPRPPPHM----VAARPAPGL 215
+ + R+ G V R + P + AP L
Sbjct: 340 SMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLL 389
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159
{Deinococcus radiodurans [TaxId: 1299]}
Length = 172
Score = 26.2 bits (57), Expect = 4.8
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 220 RMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAAMEK 259
R A H P P+A L +L+R AA+ +
Sbjct: 10 RSDWARLNHGQGPDSDGLTPSAGPMLTLLLLERLHAALGR 49
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 26.8 bits (58), Expect = 5.6
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 232 PPHPPPPPAASRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYET---TASYDPA 288
P +RG V + L A E +E H Y E A
Sbjct: 14 SRFEGGPVIWARGDVETALAGAAHLAEG--------CFEIGGQEHFYLEGQAALALPAEG 65
Query: 289 MYDPYAST 296
+ S+
Sbjct: 66 GVVIHCSS 73
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.1 bits (55), Expect = 6.8
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 38 LKLLDD--EINKAMASNKKKYDSPYLDLFREKPILVKVK 74
L LL + E+ + K P D+ RE+ +L ++
Sbjct: 18 LALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLI 56
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 8 EDGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLD 62
+ + +Y L++ S YT L + KA + +P L
Sbjct: 231 QRTENIDIKKYCVHYLED-----VGSFEYTRNTLKELEAKAYKQIDARGGNPELV 280
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD
{Salmonella enterica [TaxId: 28901]}
Length = 355
Score = 26.3 bits (56), Expect = 7.7
Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 14/97 (14%)
Query: 141 DLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQMRHP 200
D ++ L P + L + +Y PD + + H
Sbjct: 26 DFSANINPLGMPVSVKRALIDNLDCIERY--PDADYFHLHQALAR------------HHQ 71
Query: 201 RPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPP 237
P ++A + M+ P
Sbjct: 72 VPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAE 108
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 25.1 bits (55), Expect = 9.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 208 AARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAA 256
+A +PG P AA P P P AA V ILD+A A
Sbjct: 15 SAAASPGGAQAPATTGAAGT----APTAPQPTAAPSIDVAPILDKAVKA 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.371
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,511,149
Number of extensions: 73131
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 44
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)