BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1297
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 145 LELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEG----GLSNVYSGPVDVIRKLIQQH 200
L + FL+G + ++ VAP ER+K LLQVQ Y G +D + ++ ++
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 201 GLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITA 260
G S ++G A ++R P +A + K +F G V + G + +
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG------GVDRHKQFWRYFAGNLAS 118
Query: 261 GSMAGISYWIVAMPADVLKTRL 282
G AG + P D +TRL
Sbjct: 119 GGAAGATSLCFVYPLDFARTRL 140
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 91 MLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQY 150
++DCV +I +++ F++G A ++ P ALN+ + F + + + W+Y
Sbjct: 53 IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHK-QFWRY 111
Query: 151 FL----SGSLGGIVTAALVAPGE--RIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGS 204
F SG G + V P + R + V +G ++G + I K+ + GL
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 205 VFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITAGSMA 264
+++GF+ ++ + AY+ +Y+T K + + I VS +T T AG
Sbjct: 172 LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV----TAVAG--- 224
Query: 265 GISYWIVAMPADVLKTRL 282
+V+ P D ++ R+
Sbjct: 225 -----LVSYPFDTVRRRM 237
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 93 DCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFG-YGTGLKFFTNEKNMGQLELWQYF 151
+C+TKI + + + G Y+G + G+ A YFG Y T + KN+ + W
Sbjct: 158 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA-YFGVYDTAKGMLPDPKNVHIIVSWMIA 216
Query: 152 LSGSLGGIVTAALVA-PGERIKCLLQVQEG--GLSNVYSGPVDVIRKLIQQHGLGSVFKG 208
+ + A LV+ P + ++ + +Q G G +Y+G VD RK+ + G + FKG
Sbjct: 217 QTVT----AVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Query: 209 FSATLLRDVPAFGAY-YAMYETVK 231
+ +LR + GA+ +Y+ +K
Sbjct: 273 AWSNVLRGMG--GAFVLVLYDEIK 294
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 71/296 (23%)
Query: 6 VDYVWSHLYISFPDFPAMPADVLKTRLQ----------TAPEDKYPHGIRSVLSEMLERE 55
V ++ + D P D K RLQ TA +Y G+ + M+ E
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQY-RGVLGTILTMVRTE 61
Query: 56 GPRTLYRGATPVLLRAIPANAACFLGIEWTLQLLRMLDCVTKILQKEKIFGFYKGMGAPL 115
GPR+LY G L R + F + + + D V + K + G+G+ L
Sbjct: 62 GPRSLYNGLVAGLQRQMS-----FASVR-----IGLYDSVKQFYTKGSE---HAGIGSRL 108
Query: 116 VGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAALVAPGERIKCLL 175
L+GS G + A+ P + +K
Sbjct: 109 ------------------------------------LAGSTTGALAVAVAQPTDVVKVRF 132
Query: 176 QVQ-EGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 234
Q Q G Y V+ + + ++ G+ ++KG S + R+ A Y+ +K
Sbjct: 133 QAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK--- 189
Query: 235 SGQGDSVIEVSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPEDKY 290
D++++ + T L T+ AG ++A P DV+KTR + +Y
Sbjct: 190 ----DTLLKANLMT---DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 22 AMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLG 81
A P DV+KTR + +Y L+ ML +EGPR Y+G P LR N F+
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALT-MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 82 IEWTLQLLRML 92
E QL R L
Sbjct: 279 YE---QLKRAL 286
>pdb|3RJ2|X Chain X, Structural And Functional Characterization Of A Novel
Histone H3 Binding Protein Orf158l From The Singapore
Grouper Iridovirus (Sgiv)
Length = 138
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 379 IVEKCTQWIYKYPEEKNILVEDDIVEKCTQWIYKYPEEKNIL 420
IV C +++ ++ ILV ++ + C W YK+PE+ +L
Sbjct: 5 IVANC-EFVNATGKKTTILVNENWAKYCWIWTYKFPEKYTLL 45
>pdb|2Y9W|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9W|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9X|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|C Chain C, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|D Chain D, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
Length = 391
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 15/49 (30%)
Query: 332 ESPDGPFYAS----WLSDAIP-----------FDPVKGLSKCERYQYVN 365
+SP PFY W SD + FDPVKG SK E+ Y+N
Sbjct: 335 DSPLEPFYTKNQDPWQSDDLEDWETLGFSYPDFDPVKGKSKEEKSVYIN 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,851,856
Number of Sequences: 62578
Number of extensions: 610712
Number of successful extensions: 1292
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 15
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)