Query psy1297
Match_columns 427
No_of_seqs 493 out of 2486
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 15:46:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.9E-49 1.3E-53 372.2 21.4 258 5-313 2-260 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.4E-48 4.8E-53 367.5 25.0 255 5-313 8-272 (297)
3 2lck_A Mitochondrial uncouplin 100.0 3.8E-35 1.3E-39 276.5 15.1 184 5-236 105-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.3E-33 1.5E-37 261.8 20.6 191 39-233 48-296 (297)
5 1y9i_A Low temperature require 14.4 2.8E+02 0.0097 22.6 5.3 44 121-164 112-159 (178)
6 3f2e_A SIRV coat protein; four 14.2 84 0.0029 21.6 1.8 34 184-217 6-43 (100)
7 2acm_A Mucin-1; auto-catalytic 10.9 54 0.0018 21.4 -0.0 21 292-312 40-60 (66)
8 1afo_A Glycophorin A; integral 9.9 3.1E+02 0.011 16.1 3.3 22 251-272 8-29 (40)
9 1r7c_A Genome polyprotein; mem 9.3 57 0.0019 18.1 -0.3 6 400-407 9-14 (31)
10 1rfz_A Hypothetical protein AP 8.5 5.4E+02 0.019 20.7 5.1 43 121-163 114-160 (168)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.9e-49 Score=372.16 Aligned_cols=258 Identities=23% Similarity=0.307 Sum_probs=225.2
Q ss_pred chhhHHhhhhhhcccccccchHHHHHHHhcCCCCCCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHH
Q psy1297 5 GVDYVWSHLYISFPDFPAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEW 84 (427)
Q Consensus 5 ~~~~~~g~~a~~~~~~i~~Pld~iKtr~Q~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~ 84 (427)
..++++|++|++++.+++||||+||+|+|++..... .. .......|+|.
T Consensus 2 ~~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~---~~--------~~~~~~~~~~~-------------------- 50 (303)
T 2lck_A 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQG---LV--------RTAASAQYRGV-------------------- 50 (303)
T ss_dssp CCHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCS---HH--------HHCSCSSCSCH--------------------
T ss_pred chhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccc---cc--------ccccCCCCCCH--------------------
Confidence 357999999999999999999999999999875311 00 00112357777
Q ss_pred HHHHhhHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHHh
Q psy1297 85 TLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAAL 164 (427)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 164 (427)
++++++|+++||++|||||+.+++++.+|..+++|.+|+.+|+.+.+.. +..+....+++|++||+++.++
T Consensus 51 -------~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~ 121 (303)
T 2lck_A 51 -------LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAV 121 (303)
T ss_dssp -------HHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887631 2467788999999999999999
Q ss_pred hcHHHHHHHHHhcccCC-CCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhHhhHHHHHHHHHHhhccCCCCccc
Q psy1297 165 VAPGERIKCLLQVQEGG-LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIE 243 (427)
Q Consensus 165 ~~Pld~vk~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~~~~~ 243 (427)
++|+|+||+|+|++... ....|+++++++++|+++||++|||||+.|+++|.+|+.+++|.+||.+|+.+.+....
T Consensus 122 ~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~--- 198 (303)
T 2lck_A 122 AQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM--- 198 (303)
T ss_dssp SCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC---
T ss_pred cCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 99999999999998642 34578999999999999999999999999999999999999999999999988654321
Q ss_pred ccccccCCCchHHHhhHHHHHHHHHHHhhccHHHHHHHhcCCCCCCCCCcHHHHHHHHhHhhcccccccc
Q psy1297 244 VSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEPAMYAAPYCL 313 (427)
Q Consensus 244 ~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvk~r~q~~~~~~y~~~~~~~~~~i~~~~G~~g~~~~ 313 (427)
..+....+++|++||++++++++|+||||+|||++...+| +++++|+++++++||+.|||.+
T Consensus 199 -------~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y-~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 199 -------TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY-HSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp -------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSC-CSHHHHHHHHHHSSCTHHHHSC
T ss_pred -------CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccccc-CCHHHHHHHHHHHcChHHhhcc
Confidence 1226788999999999999999999999999999987789 9999999999999999999943
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-48 Score=367.48 Aligned_cols=255 Identities=18% Similarity=0.284 Sum_probs=218.9
Q ss_pred chhhHHhhhhhhcccccccchHHHHHHHhcCCCCCCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHH
Q psy1297 5 GVDYVWSHLYISFPDFPAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEW 84 (427)
Q Consensus 5 ~~~~~~g~~a~~~~~~i~~Pld~iKtr~Q~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~ 84 (427)
+.++++|++|++++.+++||||+||+|+|++..... .+....|+|.
T Consensus 8 ~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~--------------~~~~~~~~~~-------------------- 53 (297)
T 1okc_A 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ--------------ISAEKQYKGI-------------------- 53 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS--------------CCGGGSCCSH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc--------------cccccccccH--------------------
Confidence 467899999999999999999999999999864210 0112357777
Q ss_pred HHHHhhHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhcccc-CCC--chHHHHHHHHHHHHHHH
Q psy1297 85 TLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKN-MGQ--LELWQYFLSGSLGGIVT 161 (427)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~~ag~~~ 161 (427)
++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+..... ... ......+++|++||+++
T Consensus 54 -------~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~ 126 (297)
T 1okc_A 54 -------IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126 (297)
T ss_dssp -------HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996433211 111 24567899999999999
Q ss_pred HHhhcHHHHHHHHHhcccCC--CCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhHhhHHHHHHHHHHhhccCCC
Q psy1297 162 AALVAPGERIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGD 239 (427)
Q Consensus 162 ~~~~~Pld~vk~r~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~ 239 (427)
.++++|+|+||+|+|++... ....|+++++++++|+++||++|||||+.|+++|.+|+.+++|.+||.+|+.+.+..
T Consensus 127 ~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~- 205 (297)
T 1okc_A 127 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK- 205 (297)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-
T ss_pred HHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 99999999999999998532 245789999999999999999999999999999999999999999999999764321
Q ss_pred CcccccccccCCCchHHHhhHHHHHHHHHHHhhccHHHHHHHhcCCCCC-----CCCCcHHHHHHHHhHhhcccccccc
Q psy1297 240 SVIEVSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPED-----KYPHGIRSVLSEMLEPAMYAAPYCL 313 (427)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvk~r~q~~~~~-----~y~~~~~~~~~~i~~~~G~~g~~~~ 313 (427)
..+....+++|++||++++++++|+||||+|||++... .| +++++|+++++++||+.|||.+
T Consensus 206 -----------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y-~~~~~~~~~i~~~eG~~glyrG 272 (297)
T 1okc_A 206 -----------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY-TGTVDCWRKIAKDEGPKAFFKG 272 (297)
T ss_dssp -----------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSC-SSHHHHHHHHHHHHCGGGGGTT
T ss_pred -----------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHcCcCeEecc
Confidence 12367789999999999999999999999999998642 68 9999999999999999999944
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-35 Score=276.50 Aligned_cols=184 Identities=20% Similarity=0.254 Sum_probs=165.0
Q ss_pred chhhHHhhhhhhcccccccchHHHHHHHhcCCCCCCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHH
Q psy1297 5 GVDYVWSHLYISFPDFPAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEW 84 (427)
Q Consensus 5 ~~~~~~g~~a~~~~~~i~~Pld~iKtr~Q~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~ 84 (427)
+..+++|++|++++.++++|+|+||+|+|++... +....|+|.
T Consensus 105 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-----------------~~~~~~~~~-------------------- 147 (303)
T 2lck_A 105 GSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-----------------GGGRRYQST-------------------- 147 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-----------------CCSSSCCCH--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-----------------CCCCCCCCH--------------------
Confidence 4578999999999999999999999999998642 112357777
Q ss_pred HHHHhhHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHHHh
Q psy1297 85 TLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAAL 164 (427)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 164 (427)
++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+.. ....+....+++|++||++++++
T Consensus 148 -------~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ag~~~~~~ 219 (303)
T 2lck_A 148 -------VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-LMTDDLPCHFTSAFGAGFCTTVI 219 (303)
T ss_dssp -------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-SCCSCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887632 23456678899999999999999
Q ss_pred hcHHHHHHHHHhcccCCCCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhHhhHHHHHHHHHHhhcc
Q psy1297 165 VAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSG 236 (427)
Q Consensus 165 ~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~ 236 (427)
++|+|+||+|+|++.. ..|+++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+..
T Consensus 220 ~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 220 ASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 46999999999999999999999999999999999999999999999987754
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.3e-33 Score=261.83 Aligned_cols=191 Identities=21% Similarity=0.358 Sum_probs=168.4
Q ss_pred CCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHHHHHH------------------------------
Q psy1297 39 KYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEWTLQL------------------------------ 88 (427)
Q Consensus 39 ~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~~~~~------------------------------ 88 (427)
..++++.+++++++++||++++|||+.+++++..|.++++|..||..++.
T Consensus 48 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~ 127 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127 (297)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999876541
Q ss_pred --------------------------hhHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhccccC
Q psy1297 89 --------------------------LRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNM 142 (427)
Q Consensus 89 --------------------------~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~~ 142 (427)
.++++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+.
T Consensus 128 ~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--- 204 (297)
T 1okc_A 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--- 204 (297)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---
T ss_pred HHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 036789999999999999999999999999999999999999999977542
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhcccCC--CCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhH
Q psy1297 143 GQLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAF 220 (427)
Q Consensus 143 ~~~~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 220 (427)
...+....+++|++||++++++++|+|+||+|+|++... ....|+++++|+++|+++||++|||||+.|+++|. +..
T Consensus 205 ~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~ 283 (297)
T 1okc_A 205 KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283 (297)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccc
Confidence 234567889999999999999999999999999987542 23479999999999999999999999999999995 578
Q ss_pred hhHHHHHHHHHHh
Q psy1297 221 GAYYAMYETVKHV 233 (427)
Q Consensus 221 ~~~~~~ye~~k~~ 233 (427)
++.|.+||.+|+.
T Consensus 284 ~~~f~~ye~~k~~ 296 (297)
T 1okc_A 284 AFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHTC---
T ss_pred eeeehHHHHHHhh
Confidence 9999999998875
No 5
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.41 E-value=2.8e+02 Score=22.61 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHhhc----cccCCCchHHHHHHHHHHHHHHHHHh
Q psy1297 121 LNALNYFGYGTGLKFFTN----EKNMGQLELWQYFLSGSLGGIVTAAL 164 (427)
Q Consensus 121 ~~~i~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~ag~~~~~~ 164 (427)
...+.|..|+..|-.... ........++..++||.+|++++.++
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 455667777776643222 12234457888999999998866543
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=14.20 E-value=84 Score=21.58 Aligned_cols=34 Identities=15% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCcCChHHHHHHHHHhhCc----cccccchHHHHHHHH
Q psy1297 184 NVYSGPVDVIRKLIQQHGL----GSVFKGFSATLLRDV 217 (427)
Q Consensus 184 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~ 217 (427)
+++.++-+-+..++.+-|+ ++.|.|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 3667777777778888776 457888887777643
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=10.91 E-value=54 Score=21.36 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=18.0
Q ss_pred CcHHHHHHHHhHhhccccccc
Q psy1297 292 HGIRSVLSEMLEPAMYAAPYC 312 (427)
Q Consensus 292 ~~~~~~~~~i~~~~G~~g~~~ 312 (427)
+++.+.+.+|++++++.|++.
T Consensus 40 r~is~L~lqIykq~~FLgl~~ 60 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLSN 60 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEEE
T ss_pred HHHHHHHHHHHccCCeeeeeE
Confidence 568899999999999999863
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=9.95 E-value=3.1e+02 Score=16.12 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.0
Q ss_pred CCchHHHhhHHHHHHHHHHHhh
Q psy1297 251 TTPLVGTITAGSMAGISYWIVA 272 (427)
Q Consensus 251 ~~~~~~~~~~g~~ag~~~~~~t 272 (427)
..+....++.|.+||.++.++.
T Consensus 8 s~p~i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 8 SEPEITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 3446777888999999988765
No 9
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=9.29 E-value=57 Score=18.15 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=5.3
Q ss_pred cccHhhhh
Q psy1297 400 DDIVEKCT 407 (427)
Q Consensus 400 ~dlV~~C~ 407 (427)
||+| |.
T Consensus 9 wdWv--ct 14 (31)
T 1r7c_A 9 WDWI--CE 14 (31)
T ss_dssp HHHH--HH
T ss_pred HHHH--HH
Confidence 9999 96
No 10
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=8.50 E-value=5.4e+02 Score=20.71 Aligned_cols=43 Identities=5% Similarity=-0.090 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHH----hhccccCCCchHHHHHHHHHHHHHHHHH
Q psy1297 121 LNALNYFGYGTGLKF----FTNEKNMGQLELWQYFLSGSLGGIVTAA 163 (427)
Q Consensus 121 ~~~i~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 163 (427)
...+.|..++..|-. +.+..+.....++..++||..|++++.+
T Consensus 114 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 160 (168)
T 1rfz_A 114 IGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRL 160 (168)
T ss_dssp THHHHHHHHHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 445566777766532 2221233456788899999999887644
Done!