Query psy1297
Match_columns 427
No_of_seqs 493 out of 2486
Neff 9.5
Searched_HMMs 13730
Date Fri Aug 16 15:46:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1297.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1297hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 4.9E-45 3.6E-49 340.5 23.6 256 5-314 7-272 (292)
2 d1okca_ f.42.1.1 (A:) ADP,ATP 100.0 9.6E-30 7E-34 236.3 20.2 188 39-230 47-292 (292)
3 d1v54l_ f.23.6.1 (L:) Mitochon 9.6 1.3E+02 0.0098 16.8 2.8 23 261-283 22-44 (46)
4 d1yroa1 d.2.1.2 (A:1-123) alph 9.2 1E+02 0.0076 21.7 2.9 22 189-211 88-109 (123)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 8.3 1E+02 0.0076 19.6 2.3 35 202-236 34-68 (75)
6 d2b0ja1 a.100.1.11 (A:243-344) 7.6 1.8E+02 0.013 19.4 3.4 46 159-215 28-73 (102)
7 d3bnea2 b.12.1.1 (A:7-149) Pla 6.6 50 0.0036 24.2 0.0 12 380-391 118-129 (143)
8 d1y9ia_ a.195.1.1 (A:) Low tem 6.3 3.9E+02 0.028 19.4 5.1 43 122-164 108-154 (159)
9 d1rfza_ a.195.1.1 (A:) YutG ho 5.9 4.2E+02 0.031 19.3 5.1 41 123-163 116-160 (164)
10 d1kqfb2 f.23.22.1 (B:246-290) 5.6 2.5E+02 0.018 15.7 2.7 25 107-131 7-31 (45)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=100.00 E-value=4.9e-45 Score=340.54 Aligned_cols=256 Identities=18% Similarity=0.280 Sum_probs=224.1
Q ss_pred chhhHHhhhhhhcccccccchHHHHHHHhcCCCCCCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHH
Q psy1297 5 GVDYVWSHLYISFPDFPAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEW 84 (427)
Q Consensus 5 ~~~~~~g~~a~~~~~~i~~Pld~iKtr~Q~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~ 84 (427)
..+|++|++|++++.+++||||+||+|+|++... +..+..+.|+|.
T Consensus 7 ~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~--------------~~~~~~~~~~~~-------------------- 52 (292)
T d1okca_ 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS--------------KQISAEKQYKGI-------------------- 52 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGC--------------SSCCGGGSCCSH--------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCC--------------CCCCcccccCCH--------------------
Confidence 3579999999999999999999999999998753 122334667887
Q ss_pred HHHHhhHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhccccCC---CchHHHHHHHHHHHHHHH
Q psy1297 85 TLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMG---QLELWQYFLSGSLGGIVT 161 (427)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~ag~~~ 161 (427)
++++++++++||+++||||+.+.+++..+...++|..|+.+++.+....... .......+++|++||+++
T Consensus 53 -------~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 125 (292)
T d1okca_ 53 -------IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 125 (292)
T ss_dssp -------HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999987752222 234567788999999999
Q ss_pred HHhhcHHHHHHHHHhcccCC--CCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhHhhHHHHHHHHHHhhccCCC
Q psy1297 162 AALVAPGERIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGD 239 (427)
Q Consensus 162 ~~~~~Pld~vk~r~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~ 239 (427)
.++++|+|++|+|+|.+... ....|.++.+++++++++||+++||+|+.++++|.+|+.+++|..||.+|+.+.+...
T Consensus 126 ~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 205 (292)
T d1okca_ 126 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN 205 (292)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC
T ss_pred HhhhhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccccc
Confidence 99999999999999998653 4557889999999999999999999999999999999999999999999987654322
Q ss_pred CcccccccccCCCchHHHhhHHHHHHHHHHHhhccHHHHHHHhcCCCCC-----CCCCcHHHHHHHHhHhhcccccccce
Q psy1297 240 SVIEVSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPED-----KYPHGIRSVLSEMLEPAMYAAPYCLS 314 (427)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvk~r~q~~~~~-----~y~~~~~~~~~~i~~~~G~~g~~~~~ 314 (427)
......+++|+++++++++++||+||||+|||.+... +| ++++|++++++++||+.|||.+.
T Consensus 206 ------------~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y-~~~~~~~~~i~~~eG~~~lyrG~ 272 (292)
T d1okca_ 206 ------------VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY-TGTVDCWRKIAKDEGPKAFFKGA 272 (292)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSC-SSHHHHHHHHHHHHCGGGGGTTH
T ss_pred ------------cchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCC-CCHHHHHHHHHHhcCcCcccccH
Confidence 2277889999999999999999999999999998754 58 89999999999999999999654
No 2
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=99.97 E-value=9.6e-30 Score=236.27 Aligned_cols=188 Identities=21% Similarity=0.362 Sum_probs=167.9
Q ss_pred CCCCcHHHHHHHHHhhhccccccCCchHHHHhHHHHHhHHHHHHHHHHHHh-----------------------------
Q psy1297 39 KYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIEWTLQLL----------------------------- 89 (427)
Q Consensus 39 ~~~~~~~~~~~~i~~~~G~~~~y~G~~~~~~~~~~~~~~~f~~~~~~~~~~----------------------------- 89 (427)
..++++++++++++++||++++|+|+.+.++...+..+++|..++..++.+
T Consensus 47 ~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 126 (292)
T d1okca_ 47 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 126 (292)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHH
Confidence 457899999999999999999999999999999999999999988753321
Q ss_pred ---------------------------hHHHHHHHHHHhhCccccccCchHhHhhhhhhhhHHHHHHHHHHHHhhccccC
Q psy1297 90 ---------------------------RMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNM 142 (427)
Q Consensus 90 ---------------------------~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~~~~~~~~~~~~~~~ 142 (427)
++.+.+++++++||+++||+|+.+++++.++..+++|..||.+|+.+.+ .
T Consensus 127 ~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~ 203 (292)
T d1okca_ 127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD---P 203 (292)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG---G
T ss_pred hhhhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccc---c
Confidence 3678899999999999999999999999999999999999999987755 3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhcccCC--CCCCcCChHHHHHHHHHhhCccccccchHHHHHHHHhhH
Q psy1297 143 GQLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAF 220 (427)
Q Consensus 143 ~~~~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 220 (427)
........+++|++++++++++++|+|+||+|+|.+... ....|+++++++++|+++||++|||||+.|+++|.++ .
T Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~ 282 (292)
T d1okca_ 204 KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-G 282 (292)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-H
Confidence 345677889999999999999999999999999998753 2347899999999999999999999999999999766 6
Q ss_pred hhHHHHHHHH
Q psy1297 221 GAYYAMYETV 230 (427)
Q Consensus 221 ~~~~~~ye~~ 230 (427)
++.|.+||.+
T Consensus 283 ~i~~~~ye~l 292 (292)
T d1okca_ 283 AFVLVLYDEI 292 (292)
T ss_dssp HHHHHHHHTC
T ss_pred HhhhhHhhcC
Confidence 8999999963
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.56 E-value=1.3e+02 Score=16.79 Aligned_cols=23 Identities=17% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHhc
Q psy1297 261 GSMAGISYWIVAMPADVLKTRLQ 283 (427)
Q Consensus 261 g~~ag~~~~~~t~P~dvvk~r~q 283 (427)
+.++-.+++-+..||-+||..+-
T Consensus 22 a~m~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 22 AMMTLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccchHHHHHHHHh
Confidence 44555666777789999987663
No 4
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.24 E-value=1e+02 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhhCccccccchHH
Q psy1297 189 PVDVIRKLIQQHGLGSVFKGFSA 211 (427)
Q Consensus 189 ~~~~~~~i~~~~G~~gly~G~~~ 211 (427)
-..|+++|++.+|+.+ |.++..
T Consensus 88 di~CAkkI~~~~G~~a-W~~w~~ 109 (123)
T d1yroa1 88 DIACAKKILAIKGIDY-WKAYKP 109 (123)
T ss_dssp HHHHHHHHHHHTCGGG-STTHHH
T ss_pred HHHHHHHHHHHcCcch-hHHHHH
Confidence 4679999999999876 666544
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.33 E-value=1e+02 Score=19.57 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=25.4
Q ss_pred ccccccchHHHHHHHHhhHhhHHHHHHHHHHhhcc
Q psy1297 202 LGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSG 236 (427)
Q Consensus 202 ~~gly~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~ 236 (427)
+-..+|-+...++..+|...+.+.+|+..++....
T Consensus 34 i~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~ 68 (75)
T d1ppjg_ 34 IPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHHHH
Confidence 33344556667888899999999999988876543
No 6
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=7.57 E-value=1.8e+02 Score=19.39 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHHHHhhcHHHHHHHHHhcccCCCCCCcCChHHHHHHHHHhhCccccccchHHHHHH
Q psy1297 159 IVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLR 215 (427)
Q Consensus 159 ~~~~~~~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~ 215 (427)
+...++-.|.|.+.. |.. -..+.+..+++++|+.|+-+-+-|.++-
T Consensus 28 ~~t~IlgAP~~mie~--qa~---------etL~tma~L~e~~Gi~~m~kaldp~aL~ 73 (102)
T d2b0ja1 28 AVTKILGAPADFAQM--MAD---------EALTQIHNLMKEKGIANMEEALDPAALL 73 (102)
T ss_dssp HHHTTSCCCHHHHHH--HHH---------HHHHHHHHHHHHHCGGGHHHHSCGGGGG
T ss_pred HHHHHHcChHHHHHH--HHH---------HHHHHHHHHHHHhhHHHHHHhcCHHHHH
Confidence 344566778887763 332 2367888999999999999888877653
No 7
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=6.60 E-value=50 Score=24.18 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.3
Q ss_pred cccccceEEcCC
Q psy1297 380 VEKCTQWIYKYP 391 (427)
Q Consensus 380 t~~C~~w~Yd~~ 391 (427)
.-.|.+|||...
T Consensus 118 hF~CNSWVyp~~ 129 (143)
T d3bnea2 118 RFVCNSWVYNTK 129 (143)
T ss_dssp EEEEEEEECBGG
T ss_pred EEeCCCcEeECC
Confidence 347999999864
No 8
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=6.25 E-value=3.9e+02 Score=19.41 Aligned_cols=43 Identities=5% Similarity=-0.095 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHhhcc----ccCCCchHHHHHHHHHHHHHHHHHh
Q psy1297 122 NALNYFGYGTGLKFFTNE----KNMGQLELWQYFLSGSLGGIVTAAL 164 (427)
Q Consensus 122 ~~i~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ag~~~~~~ 164 (427)
..+.|..++..|-..... .......+...+++|.+|++.+.+.
T Consensus 108 gf~~Fr~~D~~Kpg~i~~ld~~~~g~~gv~lDDivagi~Aa~~srla 154 (159)
T d1y9ia_ 108 GFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 154 (159)
T ss_dssp GHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 344566666655322221 2233467888899998888777653
No 9
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.94 E-value=4.2e+02 Score=19.30 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHH----hhccccCCCchHHHHHHHHHHHHHHHHH
Q psy1297 123 ALNYFGYGTGLKF----FTNEKNMGQLELWQYFLSGSLGGIVTAA 163 (427)
Q Consensus 123 ~i~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 163 (427)
.+.|..++..|-. +..........++..+++|..|++.+.+
T Consensus 116 f~~Fr~fDi~KPg~i~~ld~~~~g~~gv~lDDivagi~Aaa~srl 160 (164)
T d1rfza_ 116 FTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRL 160 (164)
T ss_dssp HHHHHHHHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcchHHHHHHHhcCCCCeeehHHHHHHHHHHHHHHHH
Confidence 3445556655522 2221233446788889999888877664
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.63 E-value=2.5e+02 Score=15.73 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=11.6
Q ss_pred cccCchHhHhhhhhhhhHHHHHHHH
Q psy1297 107 FYKGMGAPLVGVAPLNALNYFGYGT 131 (427)
Q Consensus 107 lyrG~~~~l~~~~~~~~i~f~~~~~ 131 (427)
||||..-.+........+-..++.+
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 5666655554443333333333333
Done!