RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1297
(427 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 131 bits (332), Expect = 2e-35
Identities = 67/329 (20%), Positives = 110/329 (33%), Gaps = 64/329 (19%)
Query: 24 PADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIE 83
P D K RLQ E S+ L R YRG
Sbjct: 21 PLDTAKVRLQIQGE-----------SQGLVRTAASAQYRG-------------------- 49
Query: 84 WTLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMG 143
+L + +++ E Y G+ A L ++ Y + +F+T
Sbjct: 50 -------VLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS--E 100
Query: 144 QLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQ-EGGLSNVYSGPVDVIRKLIQQHGL 202
+ L+GS G + A+ P + +K Q Q G Y V+ + + ++ G+
Sbjct: 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160
Query: 203 GSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITAGS 262
++KG S + R+ A Y+ +K T L T+
Sbjct: 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL----------MTDDLPCHFTSAF 210
Query: 263 MAGISYWIVAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLE----PAMYA--APYCL--- 313
AG ++A P DV+KTR + +Y H ML A Y P L
Sbjct: 211 GAGFCTTVIASPVDVVKTRYMNSALGQY-HSAGHCALTMLRKEGPRAFYKGFMPSFLRLG 269
Query: 314 ---SYVFTSLDLSYRCYIPECESPDGPFY 339
+F + + R + +S + PF+
Sbjct: 270 SWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 83.5 bits (207), Expect = 4e-18
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 147 LWQYFLSGSLGGIVTAALVAPGERIKCLLQVQ-------EGGLSNVYSGPVDVIRKLIQQ 199
+ FL + + P + K LQ+Q S Y G + I +++
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 200 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTIT 259
G S++ G A L R + +Y++VK ++ + + +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS-----------EHAGIGSRLL 109
Query: 260 AGSMAGISYWIVAMPADVLKTRLQT----APEDKYP---HGIRSVLSE 300
AGS G VA P DV+K R Q +Y +++ E
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIARE 157
Score = 66.6 bits (163), Expect = 2e-12
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 22 AMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLG 81
A P DV+KTR + +Y H ML +EGPR Y+G P LR N F+
Sbjct: 220 ASPVDVVKTRYMNSALGQY-HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 82 IEWTLQLLR 90
E + L
Sbjct: 279 YEQLKRALM 287
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 120 bits (302), Expect = 4e-31
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 19/202 (9%)
Query: 91 MLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTN---EKNMGQLEL 147
++DCV +I +++ F++G A ++ P ALN+ + F
Sbjct: 53 IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112
Query: 148 WQYFLSGSLGGIVTAALVAPGERIKCLLQVQ--EGGLSNVYSGPVDVIRKLIQQHGLGSV 205
SG G + V P + + L +G ++G + I K+ + GL +
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 206 FKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITAGSMAG 265
++GF+ ++ + AY+ +Y+T K + + I VS ++ ++AG
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW-------MIAQT-VTAVAG 224
Query: 266 -ISYWIVAMPADVLKTRLQTAP 286
+SY P D ++ R+
Sbjct: 225 LVSY-----PFDTVRRRMMMQS 241
Score = 100 bits (250), Expect = 6e-24
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 91 MLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQY 150
+ +C+TKI + + + G Y+G + G+ A + Y T + KN+ + W
Sbjct: 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW-- 213
Query: 151 FLSGSLGGIVTAALVAPGERIKCLLQVQEG--GLSNVYSGPVDVIRKLIQQHGLGSVFKG 208
+ V + P + ++ + +Q G G +Y+G VD RK+ + G + FKG
Sbjct: 214 -MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Query: 209 FSATLLRDVPAFGAYYAMYETVKHV 233
+ +LR + +Y+ +K
Sbjct: 273 AWSNVLRGMGG-AFVLVLYDEIKKF 296
Score = 98.9 bits (247), Expect = 1e-23
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 143 GQLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQ----EGGLSNVYSGPVDVIRKLIQ 198
L + FL+G + ++ VAP ER+K LLQVQ + Y G +D + ++ +
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 199 QHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTI 258
+ G S ++G A ++R P +A + K +F G D + G +
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDR------HKQFWRYFAGNL 116
Query: 259 TAGSMAGISYWIVAMPADVLKTRLQT-----APEDKYPHGIRSVLSEML 302
+G AG + P D +TRL A + ++ G+ + ++++
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFT-GLGNCITKIF 164
Score = 48.8 bits (117), Expect = 1e-06
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 24 PADVLKTRLQTAP----EDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPA 74
P D ++ R+ D G ++ + EGP+ ++GA +LR +
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 283
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 6e-09
Identities = 66/351 (18%), Positives = 111/351 (31%), Gaps = 95/351 (27%)
Query: 99 LQKEKIFGFYKGMGAPLVGVAPLN--------ALNYFGYGTGLKFFTNEKNMGQLE---- 146
LQ++ F K + P G A + + GY + +GQ +
Sbjct: 33 LQEQ----FNKILPEPTEGFAADDEPTTPAELVGKFLGY---VSSLVEPSKVGQFDQVLN 85
Query: 147 -LWQYFLSGSLGG--IVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLG 203
F + L G I A E L++ +E + N + + R ++
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSN-- 142
Query: 204 SVFKGFSATLLRDVPAFGA-YYAMYETVKHVFSGQGDSVI---EVSDQTRKTTPLVGTIT 259
SA L R V A A +F GQG++ E+ D + LVG +
Sbjct: 143 ------SA-LFRAVGEGNAQLVA-------IFGGQGNTDDYFEELRDLYQTYHVLVGDL- 187
Query: 260 AGSMAGISYWIVAMPADVLKTRLQTAPEDK--YPHGIRSVLSEMLEPAMYAAP---YCLS 314
I A+ L ++T + + + G+ ++L + P+ P Y L
Sbjct: 188 ----------IKFS-AETLSELIRTTLDAEKVFTQGL-NILEWLENPS--NTPDKDY-LL 232
Query: 315 YVFTSLDL----SYRCYIPECESPDGPFYASWLSDAIPFDPVKGLSKCERYQYVNVTDTC 370
+ S L Y+ + + +KG + Q + VT
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLG-------FTPGELRSYLKGATGHS--QGL-VTAVA 282
Query: 371 TA-----NSFQDDIVEKCTQ---WI-----YKYPEEKNILVEDDIVEKCTQ 408
A SF V K +I YP N + I+E +
Sbjct: 283 IAETDSWESF-FVSVRKAITVLFFIGVRCYEAYP---NTSLPPSILEDSLE 329
Score = 53.5 bits (128), Expect = 1e-07
Identities = 80/510 (15%), Positives = 143/510 (28%), Gaps = 211/510 (41%)
Query: 12 HLYISFPDFPAMPAD---------VLKTRLQTAPEDKYPHG--IRSVLSEMLERE----- 55
L F + + + VL L E+ Y G I ++ +++L+
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 56 ---------------GPRTLYRGATPVLLRAIPANA----ACFLG---IEWTLQLLRML- 92
R + + L RA+ A F G + + LR L
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 93 -----------DCVTKILQK--------EKIFGFYKGM----------GAP----LVGVA 119
+ L + EK+F +G+ P L+ +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYLLSIP 235
Query: 120 ---PLNAL----NY--FGYGTGLKFFTNEKNMGQLELWQYFLSGSLG---GIVTAALVAP 167
PL + +Y G G+L + +L G+ G G+VTA +A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGF-------TPGEL---RSYLKGATGHSQGLVTAVAIAE 285
Query: 168 G-----------ERIKCL----LQVQEGGLSNVYSGPVDVIRKLIQQHGLG------SVF 206
+ I L ++ E S P ++ + ++ G S+
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYE--AYPNTSLPPSILEDSL-ENNEGVPSPMLSI- 341
Query: 207 KGFS-ATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGT----ITAG 261
+ + V ++ +E+S LV + +G
Sbjct: 342 SNLTQEQVQDYVNKTNSH------------LPAGKQVEIS--------LVNGAKNLVVSG 381
Query: 262 SMAGISYWIVAMPADV--LKTRLQTAPEDKYPHGI---RSVLSEMLEPAMYAAPYCLSYV 316
P + L L+ A K P G+ R SE + S
Sbjct: 382 P-----------PQSLYGLNLTLRKA---KAPSGLDQSRIPFSER-KLK-------FSNR 419
Query: 317 FTSLDLSYRCYIPECESPDGPFYASWLSDA------------IPFDPVKGLSKCERYQYV 364
F L ++ PF++ L A + F+ K + +
Sbjct: 420 F--LPVA------------SPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQ-------I 457
Query: 365 NVTDTCTANSFQ---DDIVEKCTQWIYKYP 391
V DT + + I E+ I + P
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 45.8 bits (108), Expect = 2e-05
Identities = 59/310 (19%), Positives = 94/310 (30%), Gaps = 107/310 (34%)
Query: 108 YKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELW----QYF---LSGSLGGIV 160
+GMG L Y T + ++W +F S+ IV
Sbjct: 1628 EQGMGMDL-------------YKT----SKAAQ-----DVWNRADNHFKDTYGFSILDIV 1665
Query: 161 TAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAF 220
P L + GG G K I+++ +F+ L+ F
Sbjct: 1666 IN---NPVN-----LTIHFGG----EKG------KRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 221 GAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKT 280
+ + F + + T+ T P +T A LK+
Sbjct: 1708 KE--INEHSTSYTFRSE----KGLLSATQFTQPA---LTLMEKA-----AFE----DLKS 1749
Query: 281 RLQTAPEDKYP--HGIRSVLSEMLEPAMYAAPYCLSYVFTSLD-----LSYRCYIPECES 333
+ P D H S L E YAA L+ V S++ + YR
Sbjct: 1750 K-GLIPADATFAGH---S-LGE------YAALASLADVM-SIESLVEVVFYR-------- 1789
Query: 334 PDGPFYASWLSDAIPFDPVKGLSKCERYQYVNVTDTCTANSFQDDIVEKCTQWIYKYPEE 393
G + A+P D + G S Y + + A SF + ++ + + K
Sbjct: 1790 --GMT----MQVAVPRDEL-GRSN---YGMIAINPGRVAASFSQEALQYVVERVGK---R 1836
Query: 394 KNILVEDDIV 403
LVE IV
Sbjct: 1837 TGWLVE--IV 1844
Score = 29.2 bits (65), Expect = 3.7
Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 73/174 (41%)
Query: 14 YISFPDFPAMPADVLKTR---LQTA-PEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLL 69
+S +V+ R +Q A P D E R+ Y
Sbjct: 1776 VMSIESL----VEVVFYRGMTMQVAVPRD----------------ELGRSNYGMI----- 1810
Query: 70 RAI-PANAACFLGIEWTLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFG 128
AI P A E L V + + K G+ LV + NY
Sbjct: 1811 -AINPGRVAASFSQE-------ALQYVVERVGKRT--GW-------LVEIV-----NY-- 1846
Query: 129 YGTGLKFFTNEKNMGQLELWQYFLSGSLGGI--VTAALVAPGER-IKCLLQVQE 179
N +N QY +G L + VT L + I ++++Q+
Sbjct: 1847 ---------NVENQ------QYVAAGDLRALDTVTNVLNFIKLQKID-IIELQK 1884
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 77/465 (16%), Positives = 130/465 (27%), Gaps = 112/465 (24%)
Query: 11 SHLYISFPDFPAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLR 70
S F + ++++ ++ Y + + +E + +Y L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 71 AIPANAA-------CFLGIEWTLQLLR---------MLDC-----VTKILQKEKI----- 104
A +L + L LR +L + K+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 105 FG-FYKGMG---APLVGVAPLNALNY---FGYGTGLKFFTNEKNMGQLELWQYFLSGSLG 157
F F+ + +P + L L Y + + +N K ++ Q L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRR--- 236
Query: 158 GIVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLL--R 215
L+ CLL V L NV + K F LL R
Sbjct: 237 ------LLKSKPYENCLL-V----LLNVQN------AKAWN------AFNLSCKILLTTR 273
Query: 216 DVP---AFGAYYAMYETVKHVFSG----QGDSV------IEVSD---QTRKTTPLVGTIT 259
A + ++ H + S+ D + T P +I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 260 AGSMA-GISYWIVAMPADVLKTRLQTAPEDKYPHGIRSVLSEMLEPAMYAAPYCLSYVFT 318
A S+ G++ W + DK I S L +LEPA Y + VF
Sbjct: 334 AESIRDGLATW----------DNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFP 382
Query: 319 SLDLSYRCYIPECESPDGPFYASWLSDAIPFDPVKGLSKCERYQYVN---VTDTCTANSF 375
+IP W D I D + ++K +Y V T + S
Sbjct: 383 P-SA----HIPT-----ILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 376 QDDIVEKCT-------QWIYKYPEEKNILVEDDIVEKCTQWIYKY 413
++ K + Y K +D I Q+ Y +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
>1q5f_A PILS, type IVB pilin; alpha-beta roll, monomer, cell adhesion; NMR
{Salmonella typhi} SCOP: d.24.1.1 PDB: 3fhu_A 3fhv_A*
Length = 156
Score = 29.2 bits (64), Expect = 1.4
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 137 TNEKNMGQLELWQYFLSG-SLGGIVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRK 195
TN M + F SG + + A A G + L N + G + V
Sbjct: 19 TNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPD 78
Query: 196 LIQQHGLGSVFKGFSATLLRDVP 218
G + GF+ T VP
Sbjct: 79 TAGGTGFNN---GFTIT-TNKVP 97
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca
cleavage, DNA damage, DNA repair, DNA replication,
DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Length = 196
Score = 29.0 bits (66), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 242 IEVSDQTRKTTPLVGTITAGS 262
+ +S R PL+G I AG
Sbjct: 64 LRISKSIRNKIPLIGEIRAGE 84
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 29.5 bits (67), Expect = 2.3
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 378 DIVEKCTQWIYKYPEEKNILVEDDIVEKCTQWIYKYPEEKNILV 421
D + + P++ I++ D I + Q I PEE +I++
Sbjct: 248 DFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIIL 291
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding
protein QP-C; cytochrome BC1, membrane protein, heme
protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE
HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G*
3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G*
3l74_G* 3l75_G* 3l70_G*
Length = 81
Score = 26.7 bits (59), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 200 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 234
L +V++ FS+ + + P F Y +Y F
Sbjct: 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.6 bits (62), Expect = 9.6
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 17/77 (22%)
Query: 159 IVTAALVAPGERIKCLLQVQEGGLSNVYSGP----VDVIRKLIQQHGLGSVFKGFSATLL 214
V AA A + N P V+ ++ + G + + G T
Sbjct: 40 TVAAAATASAPVR----------IENC---PDIVETAVLGEIFRAAGAHAHYDGADETFT 86
Query: 215 RDVPAFGAYYAMYETVK 231
D A+ + V
Sbjct: 87 VDASAWDRAELPADLVG 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,772,015
Number of extensions: 409160
Number of successful extensions: 890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 25
Length of query: 427
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 331
Effective length of database: 4,021,377
Effective search space: 1331075787
Effective search space used: 1331075787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)