RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1297
(427 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 66.3 bits (160), Expect = 8e-13
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 145 LELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEG----GLSNVYSGPVDVIRKLIQQH 200
L + FL+G + ++ VAP ER+K LLQVQ Y G +D + ++ ++
Sbjct: 4 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 63
Query: 201 GLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITA 260
G S ++G A ++R P +A + K +F G D + G + +
Sbjct: 64 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD------RHKQFWRYFAGNLAS 117
Query: 261 GSMAGISYWIVAMPADVLKTRLQTAPEDKYPHGIRSVLSEML 302
G AG + P D +TRL + L +
Sbjct: 118 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 159
Score = 58.6 bits (140), Expect = 3e-10
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 91 MLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQY 150
+ +C+TKI + + + G Y+G + G+ A + Y T + + +
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT---AKGMLPDPKNVHIIVS 211
Query: 151 FLSGSLGGIVTAALVAPGERIKCLLQVQEG--GLSNVYSGPVDVIRKLIQQHGLGSVFKG 208
++ V + P + ++ + +Q G G +Y+G VD RK+ + G + FKG
Sbjct: 212 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 271
Query: 209 FSATLLRDVPAFGAYYAMYETV 230
+ +LR + +Y+ +
Sbjct: 272 AWSNVLRGMGG-AFVLVLYDEI 292
Score = 45.5 bits (106), Expect = 5e-06
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 1 MSIDGVDYVWSHLYISFPDFPAMPADVLKTRLQTAPEDKYPH----GIRSVLSEMLEREG 56
V ++ + + + P D ++ R+ K G ++ + EG
Sbjct: 205 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEG 264
Query: 57 PRTLYRGATPVLLRAIPANAACFLGIE 83
P+ ++GA +LR + A + +
Sbjct: 265 PKAFFKGAWSNVLRGMG-GAFVLVLYD 290
Score = 45.1 bits (105), Expect = 7e-06
Identities = 45/271 (16%), Positives = 90/271 (33%), Gaps = 58/271 (21%)
Query: 24 PADVLKTRLQTAPEDKYPHGIRSVLSEMLEREGPRTLYRGATPVLLRAIPANAACFLGIE 83
P + +K LQ K Y+G
Sbjct: 26 PIERVKLLLQVQHASKQI--------------SAEKQYKG-------------------- 51
Query: 84 WTLQLLRMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMG 143
++DCV +I +++ F++G A ++ P ALN+ + F +
Sbjct: 52 -------IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRH 104
Query: 144 Q---LELWQYFLSGSLGGIVTAALVAPGERIKCLL--QVQEGGLSNVYSGPVDVIRKLIQ 198
+ SG G + V P + + L V +G ++G + I K+ +
Sbjct: 105 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 164
Query: 199 QHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTI 258
GL +++GF+ ++ + AY+ +Y+T K + K ++ +
Sbjct: 165 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML------------PDPKNVHIIVSW 212
Query: 259 TAGSMAGISYWIVAMPADVLKTRLQTAPEDK 289
+V+ P D ++ R+ K
Sbjct: 213 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK 243
Score = 34.3 bits (77), Expect = 0.020
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 250 KTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPEDKYPHG 293
+ + AG +A P + +K LQ K
Sbjct: 2 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISA 45
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 93
Score = 27.4 bits (61), Expect = 0.96
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 200 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 234
+ + + F+ F + L + G Y+ ++
Sbjct: 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 75
Score = 26.9 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 200 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 234
G+ +V + A +LR P F A+Y +Y F
Sbjct: 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
70863]}
Length = 173
Score = 27.1 bits (59), Expect = 2.9
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 364 VNVTDTCTANSFQDD----IVEKCTQWIYKYPEEKNILVEDDIVEKCTQWIYKYPEEKNI 419
V V+D +A ++D I++ ++ E ++ D+ T I E+
Sbjct: 8 VTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCC 67
Query: 420 LVEVSRRI 427
L+ +
Sbjct: 68 LIVTTGGT 75
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 27.4 bits (60), Expect = 4.2
Identities = 2/18 (11%), Positives = 10/18 (55%)
Query: 293 GIRSVLSEMLEPAMYAAP 310
+ +V+ +++ ++A
Sbjct: 394 RLHTVMERLMDKISFSAS 411
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 27.0 bits (59), Expect = 4.8
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 223 YYAMYETVKHVFSGQGDSVIEVSDQTRKTTPL------------VGTITAGSMAGIS 267
+ V +GD ++ + R L GT+TAG+ +G++
Sbjct: 194 RFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLN 250
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 173
Score = 26.1 bits (57), Expect = 6.7
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 237 QGDSVIEVSDQTRKTTPLVGTITAGSMAGISYWIVAMPADVLKTRLQTAPED 288
Q V E + + T + I A+P++VL
Sbjct: 106 QNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQ 157
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.1 bits (55), Expect = 7.4
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 399 EDDIVEKCTQWIYKYPEEKNILVEVSR 425
D + ++C + +PE++ L E+S
Sbjct: 58 ADMLQQECEALLVDFPEQEKELRELSA 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,660,362
Number of extensions: 78584
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 12
Length of query: 427
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,199,356
Effective search space: 406581684
Effective search space used: 406581684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)