Query psy12971
Match_columns 82
No_of_seqs 123 out of 1084
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:48:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01383 MYSc_type_VIII Myosin 100.0 4E-31 8.7E-36 198.1 6.8 79 2-81 382-460 (677)
2 PTZ00014 myosin-A; Provisional 100.0 4.1E-31 8.9E-36 201.0 6.5 79 2-81 479-557 (821)
3 cd01387 MYSc_type_XV Myosin mo 100.0 7E-31 1.5E-35 196.9 6.8 79 2-81 378-456 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 1.1E-30 2.4E-35 195.7 6.7 79 2-81 379-457 (671)
5 cd01385 MYSc_type_IX Myosin mo 100.0 1E-30 2.2E-35 196.4 6.6 79 2-81 394-472 (692)
6 cd01384 MYSc_type_XI Myosin mo 100.0 1.2E-30 2.6E-35 195.5 6.7 79 2-81 384-462 (674)
7 cd01382 MYSc_type_VI Myosin mo 100.0 1.1E-30 2.5E-35 196.7 6.4 79 2-81 414-492 (717)
8 cd01379 MYSc_type_III Myosin m 100.0 1.4E-30 2.9E-35 194.7 6.4 79 2-81 390-468 (653)
9 cd01378 MYSc_type_I Myosin mot 100.0 3.4E-30 7.4E-35 193.1 6.9 79 2-81 383-463 (674)
10 cd01377 MYSc_type_II Myosin mo 100.0 8.3E-30 1.8E-34 191.5 6.8 79 2-81 391-470 (693)
11 COG5022 Myosin heavy chain [Cy 100.0 6.2E-30 1.3E-34 199.2 5.8 78 2-80 445-523 (1463)
12 smart00242 MYSc Myosin. Large 100.0 1.5E-29 3.3E-34 189.7 6.7 79 2-81 386-464 (677)
13 cd01380 MYSc_type_V Myosin mot 100.0 1.4E-29 3.1E-34 190.2 6.4 78 2-81 385-462 (691)
14 cd00124 MYSc Myosin motor doma 100.0 5.8E-29 1.3E-33 186.6 6.1 79 2-81 379-457 (679)
15 cd01386 MYSc_type_XVIII Myosin 99.9 1.5E-28 3.2E-33 186.2 6.0 79 2-81 396-489 (767)
16 PF00063 Myosin_head: Myosin h 99.9 7.5E-28 1.6E-32 180.4 5.9 79 2-81 381-460 (689)
17 KOG0164|consensus 99.9 1.7E-27 3.6E-32 177.5 4.3 80 2-81 392-471 (1001)
18 KOG0161|consensus 99.9 1.5E-27 3.2E-32 190.8 4.0 79 1-81 464-543 (1930)
19 KOG0163|consensus 99.9 8.5E-25 1.8E-29 164.2 5.6 74 2-75 468-541 (1259)
20 KOG0160|consensus 99.9 1.1E-22 2.4E-27 154.7 5.1 74 2-76 385-458 (862)
21 KOG0162|consensus 99.8 8.9E-22 1.9E-26 147.6 3.1 81 2-82 400-484 (1106)
22 KOG4229|consensus 99.8 4.2E-21 9.2E-26 148.7 3.9 74 2-75 444-517 (1062)
23 PF11791 Aconitase_B_N: Aconit 68.2 4.9 0.00011 25.9 2.1 47 32-80 10-60 (154)
24 COG2153 ElaA Predicted acyltra 47.9 8.6 0.00019 24.7 0.7 28 10-37 117-144 (155)
25 PRK09238 bifunctional aconitat 29.3 71 0.0015 26.0 3.2 47 32-80 13-63 (835)
26 smart00394 RIIa RIIalpha, Regu 24.1 63 0.0014 15.3 1.4 12 5-17 24-35 (38)
27 TIGR00117 acnB aconitate hydra 20.2 1.3E+02 0.0029 24.5 3.2 50 29-80 10-63 (844)
No 1
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=4e-31 Score=198.15 Aligned_cols=79 Identities=49% Similarity=0.911 Sum_probs=75.9
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||+|..++|.||++|++||++||.|||++|||||++|+++| ++|++
T Consensus 382 sfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD-~~f~~ 460 (677)
T cd01383 382 SFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATD-LTFAN 460 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876 67765
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=4.1e-31 Score=200.98 Aligned_cols=79 Identities=34% Similarity=0.528 Sum_probs=75.7
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||||++|+++| ++|++
T Consensus 479 SfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD-~~f~~ 557 (821)
T PTZ00014 479 SLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTD-EKFVS 557 (821)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 67765
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=7e-31 Score=196.88 Aligned_cols=79 Identities=51% Similarity=0.850 Sum_probs=75.7
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||+|..++|.||++|++||++||.|||++|||||++|+++| ++|++
T Consensus 378 sfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td-~~~~~ 456 (677)
T cd01387 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATD-HTFLQ 456 (677)
T ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCch-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876 66765
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.96 E-value=1.1e-30 Score=195.72 Aligned_cols=79 Identities=48% Similarity=0.866 Sum_probs=75.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||.|.+++|.||++|++||++||.|||++|||||++|+++| ++|++
T Consensus 379 sfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td-~~f~~ 457 (671)
T cd01381 379 SFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTD-QTMLE 457 (671)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876 66765
No 5
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=1e-30 Score=196.41 Aligned_cols=79 Identities=57% Similarity=1.045 Sum_probs=75.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||++||.|||++|||||++|+++| ++|++
T Consensus 394 sfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td-~~~l~ 472 (692)
T cd01385 394 SFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATS-QTLLA 472 (692)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 67765
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.96 E-value=1.2e-30 Score=195.49 Aligned_cols=79 Identities=48% Similarity=0.793 Sum_probs=75.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||+|..++|.||++|++||+++|.|||++|||||++|+++| ++|++
T Consensus 384 sfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td-~~f~~ 462 (674)
T cd01384 384 SFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTH-ETFAQ 462 (674)
T ss_pred CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 66765
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=1.1e-30 Score=196.68 Aligned_cols=79 Identities=38% Similarity=0.759 Sum_probs=75.4
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|++||++||.|||++|||||++|+++| .+|++
T Consensus 414 sfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD-~~f~~ 492 (717)
T cd01382 414 SFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSD-QHFTS 492 (717)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876 66664
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=1.4e-30 Score=194.74 Aligned_cols=79 Identities=47% Similarity=0.845 Sum_probs=75.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||||++|+++| ++|++
T Consensus 390 sfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td-~~~~~ 468 (653)
T cd01379 390 SFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATD-QTLVE 468 (653)
T ss_pred CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999875 77765
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.96 E-value=3.4e-30 Score=193.12 Aligned_cols=79 Identities=43% Similarity=0.825 Sum_probs=75.1
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhcchHhhccc-CCcchhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANRQ-SEGEWRKI 79 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~iLDee~~~p-~~~~~~~~ 79 (82)
||||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||++ +|.|||++|||||++| +++| ++|
T Consensus 383 sfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD-~~~ 461 (674)
T cd01378 383 SFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTD-QTF 461 (674)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCCh-HHH
Confidence 799999999999999999999999999999999999999999999999999999 8999999999999999 6755 677
Q ss_pred hc
Q psy12971 80 LE 81 (82)
Q Consensus 80 l~ 81 (82)
++
T Consensus 462 ~~ 463 (674)
T cd01378 462 LE 463 (674)
T ss_pred HH
Confidence 75
No 10
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=8.3e-30 Score=191.50 Aligned_cols=79 Identities=46% Similarity=0.873 Sum_probs=75.1
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l 80 (82)
||||||||||||+||++|++++|+.++++|..|||.|..++| .||++|++||++||.|||++|||||++|+++| ++|+
T Consensus 391 sfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD-~~~~ 469 (693)
T cd01377 391 SFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATD-KTFV 469 (693)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCH-HHHH
Confidence 799999999999999999999999999999999999999999 59999999999999999999999999999876 6776
Q ss_pred c
Q psy12971 81 E 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 470 ~ 470 (693)
T cd01377 470 E 470 (693)
T ss_pred H
Confidence 5
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=6.2e-30 Score=199.22 Aligned_cols=78 Identities=49% Similarity=0.926 Sum_probs=73.4
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhcchHhhcccCCcchhhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~iLDee~~~p~~~~~~~~l 80 (82)
||||||||||||+||++|++|+|+.||++|.+|||.|.+|+|.||++|+|||++ .|.|||++|||||..|.|+| +.|.
T Consensus 445 SFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd-~s~~ 523 (1463)
T COG5022 445 SFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATD-ESFT 523 (1463)
T ss_pred cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCc-hHHH
Confidence 799999999999999999999999999999999999999999999999999996 48899999999999999977 4443
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=1.5e-29 Score=189.74 Aligned_cols=79 Identities=54% Similarity=1.005 Sum_probs=75.5
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|.+|||.|..+.|.||++|++||+++|.||+++|||||++|+++| ++|++
T Consensus 386 sfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td-~~~~~ 464 (677)
T smart00242 386 SFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATD-QTFLE 464 (677)
T ss_pred CHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998865 67765
No 13
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.96 E-value=1.4e-29 Score=190.22 Aligned_cols=78 Identities=50% Similarity=0.889 Sum_probs=73.9
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|||||++|+++| ++|++
T Consensus 385 sfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td-~~f~~ 462 (691)
T cd01380 385 SFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSD-ESWAQ 462 (691)
T ss_pred CHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCCh-HHHHH
Confidence 799999999999999999999999999999999999999999999999999996 6999999999999999866 66765
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.95 E-value=5.8e-29 Score=186.63 Aligned_cols=79 Identities=54% Similarity=0.963 Sum_probs=75.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||+++|.||+++|||||++|+++| .+|++
T Consensus 379 sfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d-~~~~~ 457 (679)
T cd00124 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTD-ETFLE 457 (679)
T ss_pred CHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998866 67765
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.95 E-value=1.5e-28 Score=186.23 Aligned_cols=79 Identities=34% Similarity=0.550 Sum_probs=72.4
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------CchhhcchH
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDD 66 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p--------------~Gll~iLDe 66 (82)
||||||||||||+||++|++++|..++++|..|||+|..+.+ .||.+|+++|+++| .|||++|||
T Consensus 396 sfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDE 475 (767)
T cd01386 396 TFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDE 475 (767)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhH
Confidence 799999999999999999999999999999999999986655 79999999999865 599999999
Q ss_pred hhcccCCcchhhhhc
Q psy12971 67 QANRQSEGEWRKILE 81 (82)
Q Consensus 67 e~~~p~~~~~~~~l~ 81 (82)
||++|+++| ++|++
T Consensus 476 ec~~p~~tD-~~f~~ 489 (767)
T cd01386 476 EALVPGSSD-DTFLE 489 (767)
T ss_pred hhcCCCCcH-HHHHH
Confidence 999999865 77775
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=7.5e-28 Score=180.42 Aligned_cols=79 Identities=54% Similarity=1.006 Sum_probs=72.9
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l 80 (82)
|||||||||||||||++|++++|..++++|.+|||.|..++| .||.+|++||+++|.|||++|||||++|+++| +.|+
T Consensus 381 ~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd-~~fl 459 (689)
T PF00063_consen 381 SFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSD-ESFL 459 (689)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-H-HHHH
T ss_pred ccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchh-hHHH
Confidence 699999999999999999999999999999999999999999 99999999999999999999999999998854 7776
Q ss_pred c
Q psy12971 81 E 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 460 ~ 460 (689)
T PF00063_consen 460 E 460 (689)
T ss_dssp H
T ss_pred H
Confidence 5
No 17
>KOG0164|consensus
Probab=99.94 E-value=1.7e-27 Score=177.54 Aligned_cols=80 Identities=44% Similarity=0.760 Sum_probs=78.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||+.|++.+++.||+||..|||+|.+++|.+|..++||++.+..||++||||+|..|+..+|.+||+
T Consensus 392 SFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~ 471 (1001)
T KOG0164|consen 392 SFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLE 471 (1001)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999997
No 18
>KOG0161|consensus
Probab=99.94 E-value=1.5e-27 Score=190.79 Aligned_cols=79 Identities=47% Similarity=0.875 Sum_probs=74.9
Q ss_pred CchhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhcchHhhcccCCcchhhh
Q psy12971 1 MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKI 79 (82)
Q Consensus 1 ~sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~ 79 (82)
+|||||||||+||+||++|++++|..++++|..|||.|.+|+| .|-++|++||++ |+||+|+|||||++|+||| .+|
T Consensus 464 nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd-~tf 541 (1930)
T KOG0161|consen 464 NSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATD-KTF 541 (1930)
T ss_pred CCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCcc-chH
Confidence 5899999999999999999999999999999999999999999 899999999994 8899999999999999977 666
Q ss_pred hc
Q psy12971 80 LE 81 (82)
Q Consensus 80 l~ 81 (82)
++
T Consensus 542 ~~ 543 (1930)
T KOG0161|consen 542 LE 543 (1930)
T ss_pred HH
Confidence 65
No 19
>KOG0163|consensus
Probab=99.91 E-value=8.5e-25 Score=164.19 Aligned_cols=74 Identities=46% Similarity=0.832 Sum_probs=72.6
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGE 75 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~ 75 (82)
||||||||||||+||++|++++++.+|+.|..||+.++.|.|.||++|++||+.|..||+.|||||.++|++++
T Consensus 468 SFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~ 541 (1259)
T KOG0163|consen 468 SFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSY 541 (1259)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999975
No 20
>KOG0160|consensus
Probab=99.87 E-value=1.1e-22 Score=154.70 Aligned_cols=74 Identities=55% Similarity=0.923 Sum_probs=71.7
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcch
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEW 76 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~ 76 (82)
|||||||||+||+||+.|.+|+|+.++++|..|+|+|..++|.||++|+++|+. |.|++++|||+|++|+++++
T Consensus 385 sfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~ 458 (862)
T KOG0160|consen 385 SFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDE 458 (862)
T ss_pred cHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcc
Confidence 789999999999999999999999999999999999999999999999999997 99999999999999999863
No 21
>KOG0162|consensus
Probab=99.84 E-value=8.9e-22 Score=147.60 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=74.2
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhcchHhhcccCCc---chh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANRQSEG---EWR 77 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~iLDee~~~p~~~---~~~ 77 (82)
||||+||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. .|.|||++|||.|...-|. -|.
T Consensus 400 ~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDq 479 (1106)
T KOG0162|consen 400 GFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQ 479 (1106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHH
Confidence 799999999999999999999999999999999999999999999999999986 5899999999999875544 367
Q ss_pred hhhcC
Q psy12971 78 KILET 82 (82)
Q Consensus 78 ~~l~~ 82 (82)
+|++|
T Consensus 480 a~~qr 484 (1106)
T KOG0162|consen 480 ALLQR 484 (1106)
T ss_pred HHHHH
Confidence 78775
No 22
>KOG4229|consensus
Probab=99.82 E-value=4.2e-21 Score=148.69 Aligned_cols=74 Identities=54% Similarity=0.984 Sum_probs=72.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGE 75 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~ 75 (82)
+|||+|||+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+++|..||+||+.+||||+.+|++++
T Consensus 444 sfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td 517 (1062)
T KOG4229|consen 444 SFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATD 517 (1062)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987
No 23
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.21 E-value=4.9 Score=25.89 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=24.7
Q ss_pred hhcCCcccccccCChHHHHHHHhcCCCc----hhhcchHhhcccCCcchhhhh
Q psy12971 32 NKEGIRWRHIEFSDNTLCLQLVEGKPNG----LLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 32 ~~Egi~~~~~~~~dn~~~l~li~~~p~G----ll~iLDee~~~p~~~~~~~~l 80 (82)
..+||+.-+++-.-...++++|..+|.| ++.+|-+ +.|-|.|++.++
T Consensus 10 a~~GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~--RV~PGVD~AA~V 60 (154)
T PF11791_consen 10 AALGIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTN--RVPPGVDEAAYV 60 (154)
T ss_dssp HCTT-------HHHHHHHHHHHHS--TT-HHHHHHHHHH--SS--TT-HHHHH
T ss_pred HHCCCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHh--cCCCCCChHHHH
Confidence 4568865554433457788999988877 7788876 667777876544
No 24
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=47.92 E-value=8.6 Score=24.75 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhcCCc
Q psy12971 10 YANEHLQYYFNQHVFQYEQEEYNKEGIR 37 (82)
Q Consensus 10 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 37 (82)
-|.+.||.+|-..-|....++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 3788999999999999999999999995
No 25
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=29.28 E-value=71 Score=26.01 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred hhcCCcccccccCChHHHHHHHhcCCCc----hhhcchHhhcccCCcchhhhh
Q psy12971 32 NKEGIRWRHIEFSDNTLCLQLVEGKPNG----LLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 32 ~~Egi~~~~~~~~dn~~~l~li~~~p~G----ll~iLDee~~~p~~~~~~~~l 80 (82)
...||+..+++-.-...++++|..+|.| ++.+|-+ +.|-+.|++.++
T Consensus 13 ~~~g~~p~pl~~~~~~~~~~~l~~~~~~~~~~~~~l~~~--~v~pgv~~aa~v 63 (835)
T PRK09238 13 AALGIPPLPLDAEQTAELVELLKNPPAGEEEFLLDLLTN--RVPPGVDEAAYV 63 (835)
T ss_pred HhCCCCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhc--CCCCCCChHHHH
Confidence 5678876555554467889999888887 7777766 566677776554
No 26
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=24.11 E-value=63 Score=15.30 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=7.9
Q ss_pred hhhHhhhhHHHHH
Q psy12971 5 QLCINYANEHLQY 17 (82)
Q Consensus 5 qlciN~~nE~l~~ 17 (82)
|+|.||. ++|..
T Consensus 24 ~f~~~yF-~kL~~ 35 (38)
T smart00394 24 QFAADYF-EKLEE 35 (38)
T ss_pred HHHHHHH-HHHHH
Confidence 6777777 56553
No 27
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=20.23 E-value=1.3e+02 Score=24.54 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHhhhcCCcccccccCChHHHHHHHhcCCCc----hhhcchHhhcccCCcchhhhh
Q psy12971 29 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG----LLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 29 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~G----ll~iLDee~~~p~~~~~~~~l 80 (82)
++=..+||+..+++-.-...++++|..+|.| ++.+|-. +.|-+.|++.++
T Consensus 10 ~~r~~~g~~p~pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~pgvd~aa~v 63 (844)
T TIGR00117 10 AERAAEGIPPLPLNANQMAALVELLKNPPAGEEEFLLDLLTN--RVPPGVDEAAYV 63 (844)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHh--CCCCCCChHHHH
Confidence 3445678876555443356788899887776 6666655 556666766443
Done!