Query psy12971
Match_columns 82
No_of_seqs 123 out of 1084
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 15:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 1.9E-32 6.3E-37 206.7 6.6 79 2-81 463-541 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 1.9E-32 6.4E-37 204.8 5.8 79 2-81 397-475 (697)
3 4anj_A Unconventional myosin-V 100.0 1.1E-31 3.9E-36 206.8 6.6 79 2-81 467-545 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1.9E-31 6.4E-36 201.5 6.9 78 2-81 448-525 (795)
5 1w9i_A Myosin II heavy chain; 100.0 3.4E-31 1.2E-35 199.5 6.8 79 2-81 465-545 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 3.2E-31 1.1E-35 199.9 5.8 78 2-81 472-550 (783)
7 1kk8_A Myosin heavy chain, str 100.0 5.3E-31 1.8E-35 199.8 5.8 78 2-81 471-549 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.4E-30 4.8E-35 201.3 6.6 78 2-81 448-525 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.5E-30 5.1E-35 200.0 6.5 79 2-81 444-525 (995)
10 1g8x_A Myosin II heavy chain f 100.0 3.1E-30 1.1E-34 198.4 7.0 79 2-81 465-545 (1010)
11 1i84_S Smooth muscle myosin he 100.0 6.2E-30 2.1E-34 198.6 5.7 79 2-81 475-556 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 69.5 1.7 5.7E-05 22.4 0.9 27 45-71 25-51 (53)
13 1mof_A Moloney murine leukemia 64.3 2.2 7.6E-05 22.1 0.8 27 45-71 27-53 (55)
14 4g2k_A General control protein 32.4 23 0.00079 21.1 1.7 28 45-72 78-105 (125)
15 2xz3_A Maltose ABC transporter 27.4 22 0.00076 24.7 1.2 31 45-75 411-443 (463)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=1.9e-32 Score=206.72 Aligned_cols=79 Identities=37% Similarity=0.734 Sum_probs=75.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||++||+|||+||||||++|+++| .+|++
T Consensus 463 sFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD-~~f~~ 541 (784)
T 2v26_A 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSD-QHFTS 541 (784)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCCh-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 67765
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=1.9e-32 Score=204.76 Aligned_cols=79 Identities=41% Similarity=0.703 Sum_probs=75.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||++||.|||+||||||++|+++| .+|++
T Consensus 397 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD-~~f~~ 475 (697)
T 1lkx_A 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTD-QTFLD 475 (697)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCH-HHHHH
T ss_pred CHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCCh-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999976 67765
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=1.1e-31 Score=206.76 Aligned_cols=79 Identities=37% Similarity=0.734 Sum_probs=75.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|+.++++|..|||+|..++|.||++|+|||++||+|||+||||||++|+++| .+|++
T Consensus 467 sFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD-~~f~~ 545 (1052)
T 4anj_A 467 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSD-QHFTS 545 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999865 67765
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=1.9e-31 Score=201.47 Aligned_cols=78 Identities=49% Similarity=0.833 Sum_probs=74.2
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||++| .|||+||||||++|+++| .+|++
T Consensus 448 sFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD-~~f~~ 525 (795)
T 1w7j_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSD-DTWAQ 525 (795)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCH-HHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCCh-HHHHH
Confidence 7999999999999999999999999999999999999999999999999999986 999999999999999866 67765
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=3.4e-31 Score=199.48 Aligned_cols=79 Identities=46% Similarity=0.901 Sum_probs=74.4
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCchhhcchHhhcccCCcchhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANRQSEGEWRKI 79 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~-p~Gll~iLDee~~~p~~~~~~~~ 79 (82)
||||||||||||+||++|++++|+.|+++|.+|||+|..++| .||++|+|||+++ |+|||+||||||++|+++| .+|
T Consensus 465 sFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD-~~f 543 (770)
T 1w9i_A 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATD-NTL 543 (770)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCH-HHH
T ss_pred CHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCCh-HHH
Confidence 799999999999999999999999999999999999999999 5999999999974 9999999999999999865 777
Q ss_pred hc
Q psy12971 80 LE 81 (82)
Q Consensus 80 l~ 81 (82)
++
T Consensus 544 ~~ 545 (770)
T 1w9i_A 544 IT 545 (770)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=3.2e-31 Score=199.92 Aligned_cols=78 Identities=44% Similarity=0.872 Sum_probs=72.7
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l 80 (82)
||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ |+|||+||||||++|++|| .+|+
T Consensus 472 sFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD-~tf~ 549 (783)
T 4db1_A 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATD-MTFK 549 (783)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCH-HHHH
Confidence 799999999999999999999999999999999999999999 599999999995 8999999999999999865 7776
Q ss_pred c
Q psy12971 81 E 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 550 ~ 550 (783)
T 4db1_A 550 A 550 (783)
T ss_dssp H
T ss_pred H
Confidence 5
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.96 E-value=5.3e-31 Score=199.83 Aligned_cols=78 Identities=46% Similarity=0.940 Sum_probs=73.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKIL 80 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l 80 (82)
||||||||||||+||++|++++|+.|+++|.+|||+|.+++| .||++|+|||++ |.|||+||||||++|++|| .+|+
T Consensus 471 sFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD-~tf~ 548 (837)
T 1kk8_A 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADD-KSFQ 548 (837)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCH-HHHH
T ss_pred cHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCCh-HHHH
Confidence 799999999999999999999999999999999999999999 599999999996 9999999999999999865 7776
Q ss_pred c
Q psy12971 81 E 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 549 ~ 549 (837)
T 1kk8_A 549 D 549 (837)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=1.4e-30 Score=201.31 Aligned_cols=78 Identities=49% Similarity=0.833 Sum_probs=74.1
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhcchHhhcccCCcchhhhhc
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQSEGEWRKILE 81 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~iLDee~~~p~~~~~~~~l~ 81 (82)
||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|+|||++| +|||+||||||++|+++| .+|++
T Consensus 448 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD-~~f~~ 525 (1080)
T 2dfs_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSD-DTWAQ 525 (1080)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCH-HHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCCh-HHHHH
Confidence 7999999999999999999999999999999999999999999999999999975 999999999999999866 66765
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.96 E-value=1.5e-30 Score=200.00 Aligned_cols=79 Identities=46% Similarity=0.872 Sum_probs=74.5
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCchhhcchHhhcccCCcchhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANRQSEGEWRK 78 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~--~p~Gll~iLDee~~~p~~~~~~~ 78 (82)
||||||||||||+||++|++++|+.++++|..|||+|.+++| .||++|++||++ +|+|||+||||||++|++|| .+
T Consensus 444 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD-~~ 522 (995)
T 2ycu_A 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATD-KS 522 (995)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCH-HH
T ss_pred hHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCch-HH
Confidence 799999999999999999999999999999999999999999 699999999997 49999999999999999865 77
Q ss_pred hhc
Q psy12971 79 ILE 81 (82)
Q Consensus 79 ~l~ 81 (82)
|++
T Consensus 523 f~~ 525 (995)
T 2ycu_A 523 FVE 525 (995)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.96 E-value=3.1e-30 Score=198.40 Aligned_cols=79 Identities=46% Similarity=0.891 Sum_probs=74.8
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCchhhcchHhhcccCCcchhhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANRQSEGEWRKI 79 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~-~p~Gll~iLDee~~~p~~~~~~~~ 79 (82)
||||||||||||+||++|++++|+.++++|..|||+|.+++| .||++|++||++ +|+|||+||||||++|++|| .+|
T Consensus 465 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td-~~f 543 (1010)
T 1g8x_A 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATD-NTL 543 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCH-HHH
T ss_pred cHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCCh-HHH
Confidence 799999999999999999999999999999999999999999 599999999998 49999999999999999876 777
Q ss_pred hc
Q psy12971 80 LE 81 (82)
Q Consensus 80 l~ 81 (82)
++
T Consensus 544 ~~ 545 (1010)
T 1g8x_A 544 IT 545 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.96 E-value=6.2e-30 Score=198.63 Aligned_cols=79 Identities=46% Similarity=0.859 Sum_probs=73.0
Q ss_pred chhhhhHhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCchhhcchHhhcccCCcchhh
Q psy12971 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANRQSEGEWRK 78 (82)
Q Consensus 2 sfeqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~--p~Gll~iLDee~~~p~~~~~~~ 78 (82)
||||||||||||+||++|++++|..++++|..|||+|.+++| .||++|+|||+++ |+|||+||||||++|++|| .+
T Consensus 475 sfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td-~~ 553 (1184)
T 1i84_S 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATD-TS 553 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCH-HH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCCh-HH
Confidence 799999999999999999999999999999999999999999 6999999999962 3499999999999999865 77
Q ss_pred hhc
Q psy12971 79 ILE 81 (82)
Q Consensus 79 ~l~ 81 (82)
|++
T Consensus 554 ~~~ 556 (1184)
T 1i84_S 554 FVE 556 (1184)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=69.47 E-value=1.7 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.5
Q ss_pred ChHHHHHHHhcCCCchhhcchHhhccc
Q psy12971 45 DNTLCLQLVEGKPNGLLCVLDDQANRQ 71 (82)
Q Consensus 45 dn~~~l~li~~~p~Gll~iLDee~~~p 71 (82)
.|.-.+|++..+..|+=..|.|+|.+-
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 478899999988899999999999873
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=64.29 E-value=2.2 Score=22.09 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.5
Q ss_pred ChHHHHHHHhcCCCchhhcchHhhccc
Q psy12971 45 DNTLCLQLVEGKPNGLLCVLDDQANRQ 71 (82)
Q Consensus 45 dn~~~l~li~~~p~Gll~iLDee~~~p 71 (82)
.|.-.+|++..+..|+=..|.|+|.|-
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCfy 53 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAFY 53 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhcc
Confidence 478899999988899999999999873
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.39 E-value=23 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=23.9
Q ss_pred ChHHHHHHHhcCCCchhhcchHhhcccC
Q psy12971 45 DNTLCLQLVEGKPNGLLCVLDDQANRQS 72 (82)
Q Consensus 45 dn~~~l~li~~~p~Gll~iLDee~~~p~ 72 (82)
-|...+|++.....|+=..|.++|.|.-
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CCfyi 105 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCSIGI 105 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGGCCC
T ss_pred HHHHHHHHHHHHcCCcHHHhcccceeec
Confidence 3677889888888999999999999954
No 15
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=27.37 E-value=22 Score=24.69 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=24.9
Q ss_pred ChHHHHHHHhcCCC--chhhcchHhhcccCCcc
Q psy12971 45 DNTLCLQLVEGKPN--GLLCVLDDQANRQSEGE 75 (82)
Q Consensus 45 dn~~~l~li~~~p~--Gll~iLDee~~~p~~~~ 75 (82)
-|..-+|+|..+.. |+-..|.|+|+|..-..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (463)
T 2xz3_A 411 QNRRGLDWLYIRLGFQSLCPTINEPCCFLRIQN 443 (463)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHTCCCCCCCCCC
T ss_pred hhcchhhHHHHHhCcCccchhhcCCceEEeehh
Confidence 46677888887777 99999999999977443
Done!