RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12971
(82 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 125 bits (315), Expect = 2e-35
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 63 VLDDQ 67
+LD++
Sbjct: 524 ILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 123 bits (311), Expect = 8e-35
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 63 VLDDQ 67
+LD+
Sbjct: 458 LLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 118 bits (299), Expect = 3e-33
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 117 bits (294), Expect = 1e-32
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 113 bits (286), Expect = 2e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 113 bits (284), Expect = 3e-31
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 62 CVLDDQ 67
+L+++
Sbjct: 532 SILEEE 537
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 112 bits (282), Expect = 5e-31
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 62 CVLDDQ 67
+L+++
Sbjct: 531 SILEEE 536
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 112 bits (281), Expect = 7e-31
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 59
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 60 LLCVLDDQ 67
LL +LD++
Sbjct: 505 LLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 111 bits (280), Expect = 1e-30
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 106 bits (265), Expect = 9e-29
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 58
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 59 GLLCVLDDQ 67
G+L +LD++
Sbjct: 535 GVLALLDEE 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.021
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 13 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANRQS 72
E LQ Q + + I+ R L + N LL VL + N +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAK- 257
Query: 73 EGEWR------KILET 82
W KIL T
Sbjct: 258 --AWNAFNLSCKILLT 271
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3
domains, enzyme DNA binding, biotin coupling domains;
2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A
3rky_A* 3v7c_A* 3v7s_A* 4dq2_A*
Length = 323
Score = 26.4 bits (59), Expect = 0.95
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 29 EEYNKEGIRWRHIEFSD-----NTLCLQLVEGKPNGLLCVLDDQANRQSEG 74
++Y K + E D + + G + + ++ Q++G
Sbjct: 73 DQYTKSSALFDFSEVYDSIDSTQLAAKKSLVGNQSSFFIL----SDEQTKG 119
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A
{Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB:
1bib_A* 1hxd_A* 2ewn_A*
Length = 321
Score = 26.1 bits (58), Expect = 1.2
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 9/47 (19%)
Query: 33 KEGIRWRHIEFSD-----NTLCLQLVEGKPNGLLCVLDDQANRQSEG 74
+ + N L + +G C+ A Q G
Sbjct: 73 LGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACI----AEYQQAG 115
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 25.6 bits (56), Expect = 1.9
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 12 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 45
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.0 bits (54), Expect = 3.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 26 YEQEEYNKEGIRWRHIEFSDNT 47
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.6 bits (53), Expect = 4.3
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 26 YEQEEYNKEGIRWRHIEFSD 45
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 23.9 bits (52), Expect = 7.4
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 26 YEQEEYNKEGIRWRHIEFSDNT 47
+ G+ + D
Sbjct: 47 GPPHSDSCPGLTLHRLRIPDFC 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.431
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,246,684
Number of extensions: 57680
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 22
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)