BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12972
(1578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 633 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDA 692
A+ DPY LGV RTAS +I+K YK+L EWHPDKN DP A+++F+Q+++AY ILS+
Sbjct: 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNE 72
Query: 693 ERRKQYDLFGT 703
E+R YD +G+
Sbjct: 73 EKRTNYDHYGS 83
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 636 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAER 694
S D Y+ LGVPR AS +EI+K Y +L ++HPD N +DP A+EKF QL EAY +LSD +
Sbjct: 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 695 RKQYDLFGT 703
RKQYD +G+
Sbjct: 66 RKQYDAYGS 74
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 699
Y+ LGVP++AS ++I+K + +L +++HPDKN P A+ KF ++ EAY LSDA RRK+YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 700 LFGTTDGFSGQ 710
G + SG+
Sbjct: 70 TLGHSAFTSGK 80
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 77.0 bits (188), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 636 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 695
S D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F + AY +LS+ E+R
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 696 KQYDLFGT 703
KQYD FG+
Sbjct: 66 KQYDQFGS 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y+TLG+ R AS +EI++ Y+R + +HPDKN +P A+EKF ++ EAY++LSD +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 698 YDLFGTTDGFSG 709
+D +G +G G
Sbjct: 64 FDRYG-EEGLKG 74
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 637 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAER 694
+D YE L VPR AS + I+K Y++L ++WHPDKN N A+ +F Q+ EAY +LSDA++
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 695 RKQYDLFGT 703
R YD +G+
Sbjct: 69 RDIYDRYGS 77
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 697 QYDLFG 702
YD +G
Sbjct: 64 AYDQYG 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 697
YE L VPR+AS +I+K Y+R ++WHPDKN N A++KF ++ EAY +LSD +R+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 698 YDLFGTTDGFSG 709
YD +G +G +G
Sbjct: 65 YDRYG-REGLTG 75
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 697 QYDLFG 702
YD +G
Sbjct: 64 AYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 697 QYDLFG 702
YD +G
Sbjct: 64 AYDQYG 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 24/162 (14%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 698
Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK+Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 699 DLFGTT---DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNF 755
D +G D GQ S +++ + + +DD E E D ++ S W
Sbjct: 65 DKYGEKGLEDNQGGQ-YESWSYYRYDFGIYDDD-PEIITLERREFDAAVN---SGELW-- 117
Query: 756 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 797
+ FYS C C + P +++ E+ L
Sbjct: 118 -------------FVNFYSPGCSHCHDLAPTWREFAKEVDGL 146
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 697
YE LGV +AS ++I+K Y++L + WHPDKN N A++KF ++EAY +LSD+++R
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 698 YDLFG 702
YD G
Sbjct: 72 YDRAG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 698
Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK+Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 699 DLFGTT--DGFSGQDSASRNFHNHMYNPFDD 727
D +G + G S +++ + + +DD
Sbjct: 84 DKYGEKGLEDNQGGQYESWSYYRYDFGIYDD 114
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 699
Y+ LGV A+ +E++K Y++L +++HPDKN P EKF Q+++AY +LSDA++R+ YD
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 627 NVLFINCAVSL-DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEA 685
N+ F + A+ L D Y LGV T L+ I+ Y+RL ++HPD + + A+ KF L EA
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEA 76
Query: 686 YNILSDAERRKQYDLF---GTTDGFSGQDSASRNFHNHMYNP--FDDVFSEGFN 734
+ +L D +RR +YD GF Q R H Y+ FDD+FS F
Sbjct: 77 WEVLKDEQRRAEYDQLWQHRNDPGFGRQ----RQTHEQSYSQQDFDDIFSSMFG 126
>pdb|2F3I|A Chain A, Solution Structure Of A Subunit Of Rna Polymerase Ii
Length = 150
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 571 DVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESP 611
DVN +YPVDLGDKFRLV+A+TL EDG D GE+NP ++ P
Sbjct: 42 DVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRP 82
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQY 698
Y LG+ + A+ +I+K+Y++L +++HPDKN D P A +KF ++ A+ IL+DA +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 699 DLFGT 703
D +G+
Sbjct: 80 DKYGS 84
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 699
Y+ LGV AS E++K Y+++ +++HPDKN P E+F Q+++AY +LSD ++R+ YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYD 68
Query: 700 LFG 702
G
Sbjct: 69 QGG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y +GV T L+ I+ Y+RL ++HPD + +P A+ +F ++ EA+ +LSD +RR +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 698 YD 699
YD
Sbjct: 66 YD 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQ-EKFLQLTEAYNILSDAERRKQY 698
Y+ LGV +A+ QE++K Y++ +++HPDK PT EKF +++EA+ IL+D ++R+ Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREIY 67
Query: 699 DLFG 702
D +G
Sbjct: 68 DQYG 71
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQY 698
Y+ LGVP TA+ +I+ Y R +HPD+N+ A E+F ++++AY +L A R++Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 699 D 699
D
Sbjct: 80 D 80
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND----PTAQEKFLQLTEAYNILSDAE 693
D Y+ LGV R A QEI K Y++L ++WHPD + A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 694 RRKQYD 699
RK++D
Sbjct: 443 MRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND----PTAQEKFLQLTEAYNILSDAE 693
D Y+ LGV R A QEI K Y++L ++WHPD + A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 694 RRKQYD 699
RK++D
Sbjct: 443 XRKKFD 448
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 690
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 691 DAERRKQYDL 700
+ E +K+YDL
Sbjct: 77 NEETKKKYDL 86
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQE---KFLQLTEAYNILS 690
D Y LG +A++ ++++ Y++L++ +HPDK + T +E KF+++ +A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 691 DAERRKQYDL 700
+ E +++YDL
Sbjct: 71 NEETKREYDL 80
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 861 WNFEKNYIPKSYT----TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 916
+NFEKN P+ + P ++ FY+DWC C V PI +L E V + V
Sbjct: 24 YNFEKN--PEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV-IYKVDTEK 80
Query: 917 EQGLARRLGVGSQLPQIALL-TDGRTSFFK--EPSFSVQKMVEFFRLK 961
EQ LA G+ S +P I + +G+ + P S +K ++ F LK
Sbjct: 81 EQELAGAFGIRS-IPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK 127
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 753 WNFEKNYIPKSYT----TPHLILFYSDWCFACLQVEPIFKKLMDE 793
+NFEKN P+ + P ++ FY+DWC C V PI +L E
Sbjct: 24 YNFEKN--PEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE 66
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D Y LG +S+++I +K +E HPDK+ +P A E F +L +A IL++ E R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 697 QYD 699
+YD
Sbjct: 81 RYD 83
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
+I F++ WC C + P+F+K+ D + VGF+ V V + +A+ +G+ + +P
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA-MPTFVFF 95
Query: 937 TDGR 940
+G+
Sbjct: 96 KNGQ 99
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+I F++ WC C + P+F+K+ D + VGF+ V D
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
P ++ FY+DWC C V PI ++L E + + + V+V E LAR G+ S +P I
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARDFGIQS-IPTI 109
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELS 795
P ++ FY+DWC C V PI ++L E +
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYA 81
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV 926
P ++ FY+DWC C V PI ++L E + + + V+V E LAR G+
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARDFGI 103
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELS 795
P ++ FY+DWC C V PI ++L E +
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYA 81
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKK----LMDELSPLGVGFFTVHYDLF 809
NF+ N++ T L+ FY+ WC C Q P ++K L D+ P+ V
Sbjct: 24 NFD-NFVADKDTV--LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA--------- 71
Query: 810 GTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE-----EHDISLFHKLSTTHWN-- 862
D S ASR F Y P + +G +E E ++ ++S W
Sbjct: 72 -KIDATSASVLASR-FDVSGY-PTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPP 128
Query: 863 ------FEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTV 912
K + +IL FY+ WC C ++ P ++K ELS + V
Sbjct: 129 PEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKV 188
Query: 913 HVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEP 947
E LA+R V S P + + GR + P
Sbjct: 189 DATAETDLAKRFDV-SGYPTLKIFRKGRPYDYNGP 222
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 636 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNIL 689
S D ++ LGV AS E+ K Y++L V HPDK P +++ F + A L
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 88
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 89 LLFKNGEVAATKVGALSKGQLKEFLDANL 117
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 37.7 bits (86), Expect = 0.046, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F + WC C ++P F L ++ S V F V V + Q +A + G+ +P + L +G
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDAQDVAPKYGI-RGIPTLLLFKNG 83
Query: 940 RTSFFKEPSFSVQKMVEFFRLKL 962
+ K + S ++ EF L
Sbjct: 84 EVAATKVGALSKGQLKEFLDANL 106
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 37.7 bits (86), Expect = 0.054, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ S +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGIRS-IPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 37.0 bits (84), Expect = 0.086, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F+++WC CL + PI ++L ++ VGF ++ +A R GV S LP + DG
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENPDIAARYGVMS-LPTVIFFKDG 79
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 772 FYSDWCFACLQVEPIFKKLMDELSPLGVG 800
F+++WC CL + PI ++L ++ +G G
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQVGFG 51
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI +++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILEEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
+I FY+ WC AC ++P ++ + L V V V + GL+ R + + LP I
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPTIYHC 84
Query: 937 TDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSA 972
DG ++ P + + + F K +K I P+S+
Sbjct: 85 KDGEFRRYQGPR-TKKDFINFISDK-EWKSIEPVSS 118
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCVWCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F+++WC CL + P+ ++L ++ V F ++ Q +A R G+ S LP I +G
Sbjct: 30 FWAEWCAPCLILAPVIEELANDYPQ--VAFGKLNTEESQDIAMRYGIMS-LPTIMFFKNG 86
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAACKVGALSKGQLKEFLDANL 107
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCEMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGHCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI + DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDDIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGDVAATKVGALSKGQLKEFLDANL 107
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 870 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQ 929
+ + P +I+F WC C +++P F+++ ++ + F + + + L + +
Sbjct: 14 RQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEG-DIRFAYMDAEDAEKTMAELNIRT- 71
Query: 930 LPQIALLTDG 939
LP +AL DG
Sbjct: 72 LPSLALFVDG 81
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
P +I F++ WC C PIF + E + V F V+ E L+ R + S +P I
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRS-IPTIX 114
Query: 935 LLTDGR 940
L +G+
Sbjct: 115 LYRNGK 120
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 846 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 905
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 906 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 940
V F V V + +A V +P L DG+
Sbjct: 57 NVTFLKVDVDELKAVAEEWNV-EAMPTFIFLKDGK 90
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 934
L+ FY+ WC C ++ P ++K ELS + V + LA+R V S P +
Sbjct: 28 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDV-SGYPTLK 86
Query: 935 LLTDGRTSFFKEP 947
+ GR + P
Sbjct: 87 IFRKGRPFDYNGP 99
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 35.0 bits (79), Expect = 0.35, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ P +
Sbjct: 25 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGIRGT-PTL 79
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 877 LILFYSDWCFACLQVEPIFKKLM-DELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 935
L+ F++ WC C V PI ++L D L V V+V GLA R GV S +P + L
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKV--VKVNVDEHPGLAARYGVRS-VPTLVL 110
Query: 936 LTDG 939
G
Sbjct: 111 FRRG 114
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.49, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ D+ G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADDYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 845 FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 904
FE D S+F + H + PK L+L+Y+ WC C ++ P +++L D +
Sbjct: 353 FENQDSSVFQLVGKNHDEIVND--PKKDV---LVLYYAPWCGHCKRLAPTYQELADTYAN 407
Query: 905 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTS 942
+ + + R + V P I L G+ S
Sbjct: 408 ATSDVLIAKLDHTENDVRGV-VIEGYPTIVLYPGGKKS 444
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 737 FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 792
FE D S+F + H + PK L+L+Y+ WC C ++ P +++L D
Sbjct: 353 FENQDSSVFQLVGKNHDEIVND--PKKDV---LVLYYAPWCGHCKRLAPTYQELAD 403
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.63, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ +E G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIAEEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
LI FY+ WC C +EP +K+L ++LS
Sbjct: 374 LIEFYAPWCGHCKNLEPKYKELGEKLS 400
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELS 903
LI FY+ WC C +EP +K+L ++LS
Sbjct: 374 LIEFYAPWCGHCKNLEPKYKELGEKLS 400
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 631 INCAVSLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNI 688
+N SL + LG+ R+A ++ +RK Y + E+HPDK D +EK ++ Y
Sbjct: 5 LNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKK 61
Query: 689 LSDAERRKQYDLFG 702
+ D + FG
Sbjct: 62 MEDGVKYAHQPDFG 75
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCACAKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + + +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKY-IERGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 846 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 905
EE D H L NF + Y L+ FY+ WC C + P + K +L
Sbjct: 4 EEED----HVLVLRKSNFAEALAAHKYL---LVEFYAPWCGHCKALAPEYAKAAGKLKAE 56
Query: 906 G--VGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKE 946
G + V E LA++ GV P I +G T+ KE
Sbjct: 57 GSEIRLAKVDATEESDLAQQYGV-RGYPTIKFFRNGDTASPKE 98
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 640 YETLGVPRTA-SLQEIRKNYKRLVVEWHPD--KNNDPT--AQEKFLQLTEAYNILSDAER 694
Y+ L V R Q++ K Y+ L + HPD KN + A+E+F + AY L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 695 RKQYDLF 701
+ YD +
Sbjct: 78 KTNYDYY 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ F L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKCFLDCNL 107
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F++ WC C + P+FK+L ++ + F V V + AR+ + S +P + +G
Sbjct: 31 FFATWCGPCKTIAPLFKELSEKYDAI---FVKVDVDKLEETARKYNI-SAMPTFIAIKNG 86
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ F L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKCFLDANL 107
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F++ WC C + P+FK+L ++ + F V V + AR+ + S +P + +G
Sbjct: 40 FFATWCGPCKTIAPLFKELSEKYDAI---FVKVDVDKLEETARKYNI-SAMPTFIAIKNG 95
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 44 LVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 98
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 99 LLFKNGEVAATKVGALSKGQLKEFLDANL 127
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
LI FY+ WC C +EP +K+L ++LS
Sbjct: 49 LIEFYAPWCGHCKNLEPKYKELGEKLS 75
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELS 903
LI FY+ WC C +EP +K+L ++LS
Sbjct: 49 LIEFYAPWCGHCKNLEPKYKELGEKLS 75
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 769 LILFYSDWCFACLQVEPIFKKL 790
LI FY+ WC C Q+EPI+ L
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSL 50
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 877 LILFYSDWCFACLQVEPIFKKL 898
LI FY+ WC C Q+EPI+ L
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSL 50
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 654 IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDL 700
+RK Y++L + HPD + Q L +AY+ L D RR QY L
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST--LNQAYHTLKDPLRRSQYML 71
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPSKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 654 IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDL 700
+RK Y++L + HPD + Q L +AY+ L D RR QY L
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST--LNQAYHTLKDPLRRSQYML 79
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 1143 VNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVN 1202
VN P+ + H+ +++++D K YGW + DWK TT + + +RSL
Sbjct: 90 VNVGCVPKKLMHYAGHMGSIFKLDSKA--YGWKFDNLKHDWKKLVTT---VQSHIRSL-- 142
Query: 1203 DPYNNLLYDTALKEISDEYIQSL 1225
N Y T L+ +YI L
Sbjct: 143 ----NFSYMTGLRSSKVKYINGL 161
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 748 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
+ T NFE+ + P L+ F++ WC C + PI ++L E
Sbjct: 4 IEVTDENFEQEVL--KSDKPVLVDFWAPWCGPCRMIAPIIEELAKE 47
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 856 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 901
+ T NFE+ + P L+ F++ WC C + PI ++L E
Sbjct: 4 IEVTDENFEQEVL--KSDKPVLVDFWAPWCGPCRMIAPIIEELAKE 47
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 760 IPKSYTTPHLILFYSDWCFACLQVEPIFKKL--------MDELSPLG 798
I K+ T ++++ WC C +V+ +FK+L +D+L P G
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQG 58
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 868 IPKSYTTPHLILFYSDWCFACLQVEPIFKKL--------MDELSPLG 906
I K+ T ++++ WC C +V+ +FK+L +D+L P G
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQG 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,616,781
Number of Sequences: 62578
Number of extensions: 2137847
Number of successful extensions: 5106
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 5033
Number of HSP's gapped (non-prelim): 140
length of query: 1578
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1466
effective length of database: 7,964,601
effective search space: 11676105066
effective search space used: 11676105066
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)