RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12972
(1578 letters)
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 200 bits (510), Expect = 8e-55
Identities = 92/289 (31%), Positives = 135/289 (46%), Gaps = 49/289 (16%)
Query: 286 VHQRSANRILSMCLT-NGGLYIKLGQGMVSLDHVLPRQYPHTLRALQDKCLLREKGEVDQ 344
+ L + L G +IKLGQ + + ++P +Y L LQD+
Sbjct: 52 ELREKRAERLRLALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRV---------- 101
Query: 345 LFLEDFGCTHSQLFRSFDENPIAAASLAQALQDKCLLREKGEVDQLFLEDFGCTHSQLFR 404
+A +++ E+ G +LF
Sbjct: 102 ----------------------PPFPFEEA-------------ERIIEEELGRPIEELFS 126
Query: 405 SFDENPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRERFVGDIATVQTLLRIAGFLYP-- 462
F+ PIA+AS+AQV RAV K G EVAVKVQ +RER D+ ++ L R+ L P
Sbjct: 127 EFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGG 186
Query: 463 -KFDFQWVINELKVPLEQELDFLNEGRNAERCSKDLAHLPYVYIPRILWDKSSTRVLTTE 521
+ D V++E + L +ELD+ E NAER ++ P VY+P++ W+ ++ RVLT E
Sbjct: 187 RRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTME 246
Query: 522 FIDGVKISDKEGLLEKGFSLADVDRKLFTAFAEQIFQTGFVHADPHSGN 570
+IDG+KISD L G ++ L AF Q+ + GF HADPH GN
Sbjct: 247 WIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGN 295
Score = 72.3 bits (178), Expect = 8e-13
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 38 RSVITHLG-GIKRFIRSSYTVAVISFDYWWSLRDIDEDSEYYPSILASVHQRSANRILSM 96
R + L + R +R + +A++ W + SE + L +
Sbjct: 12 RIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSE--------ELREKRAERLRL 63
Query: 97 CLT-NGGLYIKLGQGMVSLDHVLPRQYPHTLRALQDKCLLREKGEVDQLFLEDFGCTHSQ 155
L G +IKLGQ + + ++P +Y L LQD+ E +++ E+ G +
Sbjct: 64 ALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEE 123
Query: 156 LFRSFDENPIAAASLAQ 172
LF F+ PIA+AS+AQ
Sbjct: 124 LFSEFEPEPIASASIAQ 140
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 178 bits (453), Expect = 4e-48
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 3/199 (1%)
Query: 375 LQDKCLLREKGEVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQVFRAVTKEGVEVAVKV 434
LQD+ + ++ G +LF F+E P+AAAS+AQV RA +G EVAVKV
Sbjct: 89 LQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKV 148
Query: 435 QYIDLRERFVGDIATVQTLLRIAGFLYP---KFDFQWVINELKVPLEQELDFLNEGRNAE 491
+ + DIA + L RI L P + V+ E + L +ELD E NA
Sbjct: 149 LRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANAS 208
Query: 492 RCSKDLAHLPYVYIPRILWDKSSTRVLTTEFIDGVKISDKEGLLEKGFSLADVDRKLFTA 551
++ + P VY+P + WD++S RVLT E+IDG+ +SD L E G + L +
Sbjct: 209 ELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARS 268
Query: 552 FAEQIFQTGFVHADPHSGN 570
F Q+ + GF HAD H GN
Sbjct: 269 FLNQVLRDGFFHADLHPGN 287
Score = 54.6 bits (132), Expect = 3e-07
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 101 GGLYIKLGQGMVSLDHVLPRQYPHTLRALQDKCLLREKGEVDQLFLEDFGCTHSQLFRSF 160
G +IK GQ + + +LP L LQD+ + ++ G +LF F
Sbjct: 61 GPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEF 120
Query: 161 DENPIAAASLAQ 172
+E P+AAAS+AQ
Sbjct: 121 EEKPLAAASIAQ 132
>gnl|CDD|111949 pfam03109, ABC1, ABC1 family. This family includes ABC1 from yeast
and AarF from E. coli. These proteins have a nuclear or
mitochondrial subcellular location in eukaryotes. The
exact molecular functions of these proteins is not
clear, however yeast ABC1 suppresses a cytochrome b mRNA
translation defect and is essential for the electron
transfer in the bc 1 complex and E. coli AarF is
required for ubiquinone production. It has been
suggested that members of the ABC1 family are novel
chaperonins. These proteins are unrelated to the ABC
transporter proteins.
Length = 117
Score = 151 bits (385), Expect = 6e-43
Identities = 53/116 (45%), Positives = 77/116 (66%)
Query: 393 EDFGCTHSQLFRSFDENPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRERFVGDIATVQT 452
E+ G ++F FDE PIAAAS+AQV RAV K+G EVAVKVQ +++R D+ ++
Sbjct: 1 EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKDGEEVAVKVQRPGVKKRIRSDLKLLKF 60
Query: 453 LLRIAGFLYPKFDFQWVINELKVPLEQELDFLNEGRNAERCSKDLAHLPYVYIPRI 508
L +I +P FD W+++E + L QELDFL E NAE+ ++ A LP+VY+P++
Sbjct: 61 LAKILKKFFPGFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPKV 116
Score = 43.0 bits (102), Expect = 1e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 147 EDFGCTHSQLFRSFDENPIAAASLAQ 172
E+ G ++F FDE PIAAAS+AQ
Sbjct: 1 EELGAPVEEVFAEFDEEPIAAASIAQ 26
>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein
family; composed of uncharacterized proteins of about
500-800 amino acids, containing an N-terminal DnaJ
domain followed by one redox active TRX domain. DnaJ is
a member of the 40 kDa heat-shock protein (Hsp40) family
of molecular chaperones, which regulate the activity of
Hsp70s. TRX is involved in the redox regulation of many
protein substrates through the reduction of disulfide
bonds. TRX has been implicated to catalyse the reduction
of Hsp33, a chaperone holdase that binds to unfolded
protein intermediates. The presence of DnaJ and TRX
domains in members of this family suggests that they
could be involved in a redox-regulated chaperone
network.
Length = 111
Score = 132 bits (333), Expect = 6e-36
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 850 ISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF 909
S +K S T +E +PKS+ P+LI SDWCF+C+ +EP++K+++ EL PLGVG
Sbjct: 1 DSFDYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGI 60
Query: 910 FTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK 961
TV+ +E+ LAR+LG +P I + +G+ +F+ + SF+ Q +V+F R
Sbjct: 61 ATVNAGHERRLARKLGA-HSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111
Score = 92.1 bits (229), Expect = 5e-22
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 742 ISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF 801
S +K S T +E +PKS+ P+LI SDWCF+C+ +EP++K+++ EL PLGVG
Sbjct: 1 DSFDYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGI 60
Query: 802 FTVH 805
TV+
Sbjct: 61 ATVN 64
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 118 bits (297), Expect = 2e-28
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV + AS +EI+K Y++L ++HPD+N D A+EKF ++ EAY +LSD E+R Q
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60
Query: 698 YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 737
YD FG G G F + F D+F + F
Sbjct: 61 YDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGG 103
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 117 bits (296), Expect = 4e-28
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV + AS +EI+K Y++L ++HPD+N D A+EKF ++ EAY +LSD E+R
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64
Query: 697 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD FG GF F F D+F + F
Sbjct: 65 AYDQFG-HAGFKAGGFGGFGF-GGFGGDFGDIFEDFF 99
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 98.4 bits (246), Expect = 8e-25
Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGVPR AS +EI+K Y++L +++HPDKN DP A+EKF ++ EAY +LSD E+R
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 697 QYD 699
YD
Sbjct: 61 IYD 63
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 110 bits (277), Expect = 1e-24
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 395 FGCTHSQLFRSFDENPIAAASLAQVFRAVTKE-GVEVAVKVQYIDLRERFVGDIATVQTL 453
G + F FD P+A+AS+AQV A K+ G EV VKV D+ D+A + L
Sbjct: 111 LGGPVEEWFDDFDIKPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRL 170
Query: 454 LRIAGFLYPKFDF---QWVINELKVPLEQELDFLNEGRNAERCSKDLAHLPYVYIPRILW 510
R L P + V+ E + L ELD + E NA + ++ +Y+P + W
Sbjct: 171 ARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYW 230
Query: 511 DKSSTRVLTTEFIDGVKISDKEGLLEKGFSLADVDRKLF-----TAFAEQIFQTGFVHAD 565
D S V+ E + G+ +SD L G D KL F Q+F+ GF HAD
Sbjct: 231 DYCSETVMVMERMYGIPVSDVAALRAAG-----TDMKLLAERGVEVFFTQVFRDGFFHAD 285
Query: 566 PHSGN 570
H GN
Sbjct: 286 MHPGN 290
Score = 36.0 bits (84), Expect = 0.16
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 101 GGLYIKLGQGMVSLDHVLPRQYPHTLRALQDKCLLREKGEVDQLFLED-FGCTHSQLFRS 159
G +++K GQ + + + P L LQD+ + G + + +E G + F
Sbjct: 63 GPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFD-GALARAIIEKALGGPVEEWFDD 121
Query: 160 FDENPIAAASLAQ 172
FD P+A+AS+AQ
Sbjct: 122 FDIKPLASASIAQ 134
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 106 bits (267), Expect = 2e-24
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV R A+ +EI+K Y+RL ++HPD N +P A+EKF ++ EAY +LSD E+RK
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63
Query: 698 YDLFGTTDGFSGQDSASRNFHNHMYNPF---DDVFSE---GFNF 735
YD FG FSG + +D+ + F F
Sbjct: 64 YDQFG-HAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGF 106
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 103 bits (257), Expect = 5e-23
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 634 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 693
A + D YE LG+ + AS+++I+K Y++L +++HPDKN +P A+EKF +++EAY +LSDAE
Sbjct: 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAE 61
Query: 694 RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
+R QYD FG G Q SA F + F D+F F
Sbjct: 62 KRAQYDRFGHA-GIDNQYSAEDIFRGADFGGFGDIFEMFF 100
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 101 bits (252), Expect = 2e-22
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 10/103 (9%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV R A +EI+K Y++L ++HPD + + A+EKF +++EAY +LSD E+R++
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65
Query: 698 YDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE 738
YD FG DGFS +D N++ F+D+F GF F
Sbjct: 66 YDQFGHAGMDGFSQED-----IFNNI--NFEDIFQ-GFGFGIG 100
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 99.1 bits (248), Expect = 7e-22
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV R AS EI+K Y++L +++HPD+N D A+EKF ++ EAY +LSD ++R
Sbjct: 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64
Query: 697 QYDLFG--------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD +G GF G F + F D+F + F
Sbjct: 65 AYDQYGHAAFEQGGGGGGFGGGG----GFG----DIFGDIFGDIF 101
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 96.5 bits (240), Expect = 6e-21
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 637 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 696
+D YE LGV RTAS EI+ Y++L +++HPD+N + A EKF Q+ EAY +LSDAE+R
Sbjct: 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61
Query: 697 QYDLFGTTD--GFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD FGT G G D F ++P D+F + F
Sbjct: 62 HYDRFGTAPGAGMPGGDP----FGGMGFDPM-DIFEQLF 95
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 95.2 bits (237), Expect = 2e-20
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 16/106 (15%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
+ Y+ LGV + AS EI+K Y++L ++HPD N +P A+EK+ ++ EAY LSD ++R
Sbjct: 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64
Query: 698 YDLFGTTD----------GFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD +G GF G D + + F+D+FS F
Sbjct: 65 YDQYGAAGANGGFGGGAGGFGGFDGSGG------FGGFEDIFSSFF 104
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 94.8 bits (236), Expect = 2e-20
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV ++AS EI+K Y++L ++HPD N + A EKF +++EAY +LSD ++R Q
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64
Query: 698 YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD FG GF G +F F+D+FS F
Sbjct: 65 YDQFGHAGPNQGFGGGGFGGGDFGGGF--GFEDIFSSFF 101
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 92.7 bits (230), Expect = 3e-20
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y LGVP+ AS EI+K +K+L ++HPD N P A+EKF ++ EAY +LSD E+R+
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64
Query: 698 YDLFGTTDGFSGQDS------ASRNFHNHMYNPFDDVFSEGFNFP 736
YD +GTT +G +F F D F + F
Sbjct: 65 YDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGR 109
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 94.0 bits (234), Expect = 4e-20
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 634 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDA 692
D YE LGV R AS EI+K Y++L +++HPD+N ++P A++KF + EAY +L DA
Sbjct: 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60
Query: 693 ERRKQYDLFGTTDGFSGQDSASRNFHNH--MYNPFDDVFSEGFNF 735
E+R +YD FG G +G F + +++ F D+F + F F
Sbjct: 61 EKRARYDRFG-HAGVNGNGGFG-GFSSAEDIFSHFSDIFGDLFGF 103
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 92.5 bits (230), Expect = 1e-19
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
D YE LGV R A+ +EI++ YKRLV EWHPD++ N A++KF ++ EAY +LSD ++R
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64
Query: 696 KQYDLFG-TTDG-FSGQDSASRNFHNHMYNPFDDVFSEGFNF 735
YD FG + + + F F+D+F + N
Sbjct: 65 AMYDRFGYVGEQPPYQETESGGGF-------FEDIFKDFENI 99
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 92.1 bits (229), Expect = 2e-19
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV R AS +EI+K+Y++L +++HPD+N D A+E F + EAY +LSD ++R
Sbjct: 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64
Query: 697 QYDLFGTTDGFSGQD-SASRNFHNHMYNPFDDVFSEGFNF 735
YD +G +G SG S F + +++ F D+F + F F
Sbjct: 65 IYDQYG-HEGLSGTGFSGFSGFDD-IFSSFGDIFEDFFGF 102
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 83.1 bits (206), Expect = 2e-19
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAER 694
D YE LGVPR ASL EI+K Y++L +++HPDKN + A+EKF ++ EAY +LSD E+
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 82.6 bits (205), Expect = 2e-19
Identities = 30/55 (54%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSD 691
D Y+ LGVP AS +EI+K Y++L +++HPDKN D P A+EKF ++ EAY +LSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 89.5 bits (222), Expect = 1e-18
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 16/117 (13%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV R+A EI+K Y++L +++HPDKN ++ A+E F ++ EAY +LS+ ++R+
Sbjct: 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63
Query: 697 QYDLFG--------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGFN------FPFEE 739
+YD FG + G G +F N +++ F+D+F G F FE+
Sbjct: 64 RYDQFGHAGVGSSAASGGGPGYGGGGGDF-NDIFSAFNDMFGGGARRGGGSPFGFED 119
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 88.5 bits (219), Expect = 2e-18
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV +TAS QEIR+ Y++L ++HPD N P A +K +++ EA ++L D ++RKQ
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64
Query: 698 YDLFGTT--DGFSGQDSASRNFHNHMYN-------PFDDVFSEGF 733
YD FG DG SG S +F + N F ++FS+ F
Sbjct: 65 YDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFF 109
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 88.3 bits (219), Expect = 3e-18
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV R A+ +EI+K Y+RL ++HPD N D A++KF ++ EAY ILSD ++R
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65
Query: 697 QYDLFG---------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 737
QYD FG GF + + F D+F + F F
Sbjct: 66 QYDQFGHAAFDPGGFGQGGFGQGG-FGGGGFDFDFGGFGDIFEDIFGDFF 114
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 87.5 bits (217), Expect = 6e-18
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LG+ + AS EI+K +++L +++HPDKN + A+EKF ++ EAY +LSD +++
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64
Query: 697 QYDLFGTTD--GFSGQDSAS-RNFHNHMYNPFDDVFSEGF 733
QYD FGT D G G S F F D+F F
Sbjct: 65 QYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFF 104
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 87.2 bits (216), Expect = 9e-18
Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D Y+ LGVP+ A+ EI+K Y++L E+HPD N D A+E+F +++EAY++LSD ++RK
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69
Query: 697 QYD----LFG 702
+YD LFG
Sbjct: 70 EYDEARSLFG 79
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 85.8 bits (212), Expect = 2e-17
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
D Y+ LGV R AS ++I+K ++ L +WHPD + N A+EKF +++EAY +LSD ++R
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63
Query: 696 KQYDLFGTTD-GFSGQDSASRNFHNHMYNPFDDVFSEGF--NF 735
+QYD GT D G G + NF + ++ +D+F++ F NF
Sbjct: 64 RQYDQTGTVDFGAGGSNFNWDNFTH--FSDINDIFNQIFGGNF 104
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 85.3 bits (211), Expect = 3e-17
Identities = 35/75 (46%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 637 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERR 695
+D Y LGV +TAS +EI+K Y++L V++HPDKN D A+++F +++EAY +LSDA++R
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60
Query: 696 KQYDLFGTTDGFSGQ 710
+ YD +G F+G
Sbjct: 61 ESYDRYGKDGPFAGA 75
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 82.7 bits (204), Expect = 2e-16
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV R AS+ E++K Y++L ++HPD N P A++KF ++ EAY+ LSD +++
Sbjct: 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64
Query: 698 YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD FG TD GF G + + F D+F F
Sbjct: 65 YDQFGHTDPNQGFGGGGAGD-------FGGFSDIFDMFF 96
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 81.8 bits (202), Expect = 4e-16
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA++ EI+K Y++ +++HPDKN D A+EKF + EAY++LSD ++R
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65
Query: 697 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFS 730
+YD FG G G +A + +D+FS
Sbjct: 66 RYDQFGHA-GVGG--AAGGGGFSGEGMSMEDIFS 96
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 81.6 bits (202), Expect = 5e-16
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y LGV R AS EI++ Y++L E HPD N D AQEKF +++ AY +LSD E+R+
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63
Query: 698 YDLFG 702
DL G
Sbjct: 64 VDLGG 68
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 78.7 bits (193), Expect = 6e-16
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 636 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAE 693
LD YE LGVP ASL+EI+K Y++L +++HPD+N A+EKF ++ EAY ILSD E
Sbjct: 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64
Query: 694 RRKQYDLFGTTDGFSGQDS-ASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLS 749
RR +YD G + F G+ S F ++ E + + L
Sbjct: 65 RRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLL 121
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 81.2 bits (200), Expect = 6e-16
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQY 698
Y+ LGV ++A+ +EI+ Y++L +++HPDKN + ++EKF + TEAY IL D ++R+ Y
Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAY 66
Query: 699 DLF---GTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
D F G G G + + ++ F D+F + F
Sbjct: 67 DQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFF 104
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 80.8 bits (200), Expect = 8e-16
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV R A E+++ Y+RL ++HPD N +P A+++F ++ AY +LSD E R +
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63
Query: 698 YDLFGTTDGFSG 709
YD FG G SG
Sbjct: 64 YDQFGEA-GVSG 74
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 78.1 bits (192), Expect = 6e-15
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LG+ + AS EI+K Y+++ +++HPDKN + A+ F + TEAY +L D +R
Sbjct: 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63
Query: 697 QYDLFGTT-----DGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
QYD FG T GF G F + ++ F D+F F
Sbjct: 64 QYDRFGHTAFEGGGGFEGFSGGFSGFSD-IFEDFGDIFDSFF 104
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 76.7 bits (189), Expect = 2e-14
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D Y+ LGV AS +EI+K Y++L E HPD N DP A+E+F ++EA+++LSD +RK
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69
Query: 697 QYD 699
+YD
Sbjct: 70 EYD 72
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 74.3 bits (182), Expect = 1e-13
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 635 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAER 694
+S D Y+ LGV +TAS +++K Y +L ++HPD + A++KF ++ AY++L D ++
Sbjct: 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60
Query: 695 RKQYDLFGTTDGFSGQDS-----ASRNFHNHMYNPFDDVFSE 731
R YD FG D F Q S FH + + F D FS+
Sbjct: 61 RAAYDRFG-HDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSD 101
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 74.5 bits (183), Expect = 2e-13
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 699
YE L + + + EI+K Y++L ++ HPDK DP EKF +++ AY +LSD E+RK YD
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP---EKFKEISRAYEVLSDPEKRKIYD 87
Query: 700 LFGTTDGFSG 709
+G +G G
Sbjct: 88 EYG-EEGLEG 96
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 71.4 bits (175), Expect = 5e-13
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y +GV T L+ I+ Y+RL ++HPD + +P A+ +F ++ EA+ +LSD +RR +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 698 YD---LFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD F + + + FDD+FS F
Sbjct: 65 YDQLWQHRNDPQF-NRQFQHGDGQSFNAEDFDDIFSSIF 102
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 73.3 bits (179), Expect = 8e-13
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LG+ R A QEI+K +++L ++HPD+N P A F ++ EA ++LS+ ++R
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62
Query: 698 YDLFGTTDGFSGQDSASRNFHNHMYNPF 725
YD +G DG +D +F ++N F
Sbjct: 63 YDKYG-HDGVDREDDF--DFQADVFNSF 87
>gnl|CDD|217771 pfam03870, RNA_pol_Rpb8, RNA polymerase Rpb8. Rpb8 is a subunit
common to the three yeast RNA polymerases, pol I, II and
III. Rpb8 interacts with the largest subunit Rpb1, and
with Rpb3 and Rpb11, two smaller subunits.
Length = 137
Score = 66.0 bits (161), Expect = 2e-12
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 562 VHADPHSGN-----DVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESP 611
+ A+ S D+N+ LYP+ +GDKFRLV+A+TL EDG D G +NP +
Sbjct: 22 IEAESESFKMELILDINSQLYPLAVGDKFRLVIASTLLEDGTADDGSYNPAGDRF 76
>gnl|CDD|197821 smart00658, RPOL8c, RNA polymerase subunit 8. subunit of RNA
polymerase I, II and III.
Length = 143
Score = 60.9 bits (148), Expect = 1e-10
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 562 VHADPHSGN-----DVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESP 611
+ A+ D+N+ +YP+ +GDKFRLV+A+TL EDG PDSGE NP+
Sbjct: 27 IFAESEYLQMELILDINSEIYPLAVGDKFRLVIASTLNEDGTPDSGENNPIALIK 81
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 65.8 bits (160), Expect = 1e-10
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK--NNDPTA----QEKFLQLTEAYNILSD 691
DPYE LG+ + S ++I+K Y+ L +++HPDK +EK+ +T+AY +L+D
Sbjct: 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158
Query: 692 AERRKQYDLFGTTDG 706
+RR+ Y +GT D
Sbjct: 159 KKRRENYLNYGTPDS 173
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 63.9 bits (155), Expect = 2e-10
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 635 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAE 693
+ L YE L V + ++ + I+K+Y++L +++HPD+N D A+EKF + EAY +LSD +
Sbjct: 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEK 60
Query: 694 RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNF 735
+R YD +G G + Q AS++ + + F + F F
Sbjct: 61 KRALYDRYG-KKGLN-QAGASQSDFSDFFEDLGSFFEDAFGF 100
>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 304
Score = 51.2 bits (123), Expect = 2e-06
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 917
T NFE+ I S P L+ F++ WC C Q+ P +KL E V+ E
Sbjct: 28 VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE 86
Query: 918 QGLARRLGVGSQLPQIALLTDGR 940
+A + GV S +P + DG+
Sbjct: 87 PMVAAQFGVQS-IPTVYAFKDGQ 108
Score = 40.4 bits (95), Expect = 0.005
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 750 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
T NFE+ I S P L+ F++ WC C Q+ P +KL E
Sbjct: 28 VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAE 71
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 50.9 bits (121), Expect = 6e-06
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 699
Y+ LGV A ++EI + Y +L ++P K + KF ++ EAY IL D +++K Y+
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYN 635
Query: 700 LFGTTDGFSG 709
FG DG G
Sbjct: 636 KFG-YDGIKG 644
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 44.1 bits (105), Expect = 2e-05
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNEQGL 920
NF++ + S L+ FY+ WC C + P ++KL EL V V L
Sbjct: 7 NFDE-LVKDS--KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDL 63
Query: 921 ARRLGVGSQLPQIALLTDGRTSFFK-EPSFSVQKMVEF 957
GV P I L +G K E +++ +VEF
Sbjct: 64 CSEYGV-RGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100
Score = 36.0 bits (84), Expect = 0.022
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
NF++ + S L+ FY+ WC C + P ++KL EL
Sbjct: 7 NFDE-LVKDS--KDVLVEFYAPWCGHCKALAPEYEKLAKELK 45
>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I,
which includes proteins that exclusively encode a TRX
domain; and Group II, which are composed of fusion
proteins of TRX and additional domains. Group I TRX is a
small ancient protein that alter the redox state of
target proteins via the reversible oxidation of an
active site dithiol, present in a CXXC motif, partially
exposed at the protein's surface. TRX reduces protein
disulfide bonds, resulting in a disulfide bond at its
active site. Oxidized TRX is converted to the active
form by TRX reductase, using reducing equivalents
derived from either NADPH or ferredoxins. By altering
their redox state, TRX regulates the functions of at
least 30 target proteins, some of which are enzymes and
transcription factors. It also plays an important role
in the defense against oxidative stress by directly
reducing hydrogen peroxide and certain radicals, and by
serving as a reductant for peroxiredoxins. At least two
major types of functional TRXs have been reported in
most organisms; in eukaryotes, they are located in the
cytoplasm and the mitochondria. Higher plants contain
more types (at least 20 TRX genes have been detected in
the genome of Arabidopsis thaliana), two of which (types
f amd m) are located in the same compartment, the
chloroplast. Also included in the alignment are TRX-like
domains which show sequence homology to TRX but do not
contain the redox active CXXC motif. Group II proteins,
in addition to either a redox active TRX or a TRX-like
domain, also contain additional domains, which may or
may not possess homology to known proteins.
Length = 93
Score = 43.7 bits (104), Expect = 3e-05
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
P ++ F++ WC C + P+ ++L +E V F V V LA GV +P
Sbjct: 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDENPELAEEYGV-RSIPTFL 68
Query: 935 LLTDGR 940
+G+
Sbjct: 69 FFKNGK 74
Score = 34.1 bits (79), Expect = 0.087
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDE 793
P ++ F++ WC C + P+ ++L +E
Sbjct: 12 PVVVDFWAPWCGPCKAIAPVLEELAEE 38
>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein
containing a redox-inactive TRX-like domain. Its gene
has been sequenced from several gammaproteobacteria and
actinobacteria.
Length = 96
Score = 42.6 bits (101), Expect = 8e-05
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
NF+ + +S P ++ F++ ++ P+ ++L +E V+ + +A
Sbjct: 2 NFQ-QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE-YQGQFVLAKVNCDAQPQIA 59
Query: 922 RRLGVGSQLPQIALLTDGR 940
++ GV + LP + L G+
Sbjct: 60 QQFGVQA-LPTVYLFAAGQ 77
Score = 33.4 bits (77), Expect = 0.16
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
NF+ + +S P ++ F++ ++ P+ ++L +E
Sbjct: 2 NFQ-QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE 40
>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin. Several proteins, such as
protein disulfide isomerase, have two or more copies of
a domain closely related to thioredoxin. This model is
designed to recognize authentic thioredoxin, a small
protein that should be hit exactly once by This model.
Any protein that hits once with a score greater than the
second (per domain) trusted cutoff may be taken as
thioredoxin [Energy metabolism, Electron transport].
Length = 101
Score = 41.5 bits (98), Expect = 3e-04
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
P L+ F++ WC C + PI ++L E V F ++V +A + G+ S +P +
Sbjct: 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRS-IPTLL 73
Query: 935 LLTDG 939
L +G
Sbjct: 74 LFKNG 78
Score = 29.6 bits (67), Expect = 3.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSP 796
P L+ F++ WC C + PI ++L E
Sbjct: 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEG 45
>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of
proteins similar to the TRX-related human transmembrane
protein, TMX. TMX is a type I integral membrane protein;
the N-terminal redox active TRX domain is present in the
endoplasmic reticulum (ER) lumen while the C-terminus is
oriented towards the cytoplasm. It is expressed in many
cell types and its active site motif (CPAC) is unique.
In vitro, TMX reduces interchain disulfides of insulin
and renatures inactive RNase containing incorrect
disulfide bonds. The C. elegans homolog, DPY-11, is
expressed only in the hypodermis and resides in the
cytoplasm. It is required for body and sensory organ
morphogeneis. Another uncharacterized TRX-related
transmembrane protein, human TMX4, is included in the
alignment. The active site sequence of TMX4 is CPSC.
Length = 101
Score = 41.2 bits (97), Expect = 3e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
+I FY+ WC AC Q++P +++ D LG+ V V E GL+ R V + LP I
Sbjct: 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA-LPTIYHA 78
Query: 937 TDG 939
DG
Sbjct: 79 KDG 81
Score = 32.7 bits (75), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGV 799
+I FY+ WC AC Q++P +++ D LG+
Sbjct: 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGI 50
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 637 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFL-----QLTEAYNILSD 691
D + LGV A I+K Y++L+ E HPDK + +F+ +L E D
Sbjct: 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172
Query: 692 AE 693
+
Sbjct: 173 IK 174
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 42.1 bits (100), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK 669
D Y+ LGV + QEI++ Y++L+ E HPDK
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Some members with only the active site are not separated
from the noise.
Length = 104
Score = 39.1 bits (92), Expect = 0.002
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
NF++ + KS P L+ FY+ WC C + P ++KL E V F V LA
Sbjct: 9 NFDE-EVAKS-DKPVLVDFYAPWCGPCKALAPEYEKLAQEYKD-DVKFAKVDADENPDLA 65
Query: 922 RRLGVGSQLPQIALLTDG 939
GV P I +G
Sbjct: 66 SEYGVRG-FPTIKFFKNG 82
Score = 35.7 bits (83), Expect = 0.029
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
NF++ + KS P L+ FY+ WC C + P ++KL E
Sbjct: 9 NFDE-EVAKS-DKPVLVDFYAPWCGPCKALAPEYEKLAQEYK 48
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 39.9 bits (93), Expect = 0.004
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 640 YETLGVPRTAS--LQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQ----LTEAYNILSDAE 693
++ LG+P+ + L+ + K Y + V++HPDK +E+ L L AY+ L DA
Sbjct: 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64
Query: 694 RRKQYDL 700
+R +Y L
Sbjct: 65 KRAEYML 71
>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein;
Provisional.
Length = 224
Score = 40.4 bits (94), Expect = 0.004
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 854 HKLSTTHWNFEK--NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT 911
+ NFEK + T P + FY+ WC C ++ P +++L L V
Sbjct: 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVAD 89
Query: 912 VHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF----FRLKLPYKLI 967
+ LA+R + P + L G+ ++ S +K+ F F+ L +
Sbjct: 90 LDATRALNLAKRFAIKG-YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKALGAPVP 148
Query: 968 VPLS--ATNVDAFLDNWREDNKVHALLF 993
PLS A +D F+ E +++ F
Sbjct: 149 APLSFFALTIDFFVSGTNEALRIYDAAF 176
Score = 31.5 bits (71), Expect = 2.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 746 HKLSTTHWNFEK--NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
+ NFEK + T P + FY+ WC C ++ P +++L L
Sbjct: 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKAL 81
>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 127
Score = 38.0 bits (87), Expect = 0.007
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGV-GSQLPQ 932
P L+ F++ WC C P+ ++L +E V V+V +E LA GV +P
Sbjct: 34 PVLVDFWAPWCPPCRAEAPLLEELAEEY-GGDVEVVAVNVDDENPDLAAEFGVAVRSIPT 92
Query: 933 IALLTDGR 940
+ L DG+
Sbjct: 93 LLLFKDGK 100
Score = 33.7 bits (76), Expect = 0.26
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
P L+ F++ WC C P+ ++L +E V V+ D
Sbjct: 34 PVLVDFWAPWCPPCRAEAPLLEELAEEY-GGDVEVVAVNVD 73
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 39.2 bits (91), Expect = 0.014
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 634 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTA---QEKFLQLTEAYNILS 690
+ L Y T +P +I K +K+ V ++HPDK E F + +A +L
Sbjct: 48 LLGLSKYRTKAIP-----PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLG 102
Query: 691 DAERRKQYD 699
D + R QYD
Sbjct: 103 DRKLRLQYD 111
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 35.0 bits (80), Expect = 0.021
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---HNEQGLARRLGVGSQLPQI 933
L+LFY+ WC C + P+ +L GV F V V + +R GVG +P +
Sbjct: 1 LVLFYAPWCPFCQALRPVLAELALLN--KGVKFEAVDVDEDPALEKELKRYGVG-GVPTL 57
Query: 934 ALLTDG 939
+ G
Sbjct: 58 VVFGPG 63
Score = 35.0 bits (80), Expect = 0.024
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFG 810
L+LFY+ WC C + P+ +L GV F V D
Sbjct: 1 LVLFYAPWCPFCQALRPVLAELALLN--KGVKFEAVDVDEDP 40
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 36.6 bits (85), Expect = 0.035
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 641 ETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQY 698
+ LG+PR+A +L +RK Y R +E+HPDK D EK +L Y ++ + +
Sbjct: 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE---EKMKELNTLYKKFRESVKSLRD 65
Query: 699 DLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF---NFPFEEHDISLFHKLSTTHWNF 755
+D S + + ++ + + +F L H
Sbjct: 66 LDGEEDSSSEEEDVPSGYVGATFGDRVNALYCKDWDTCLKNLSSLCKCIFCLLRKQHRL- 124
Query: 756 EKNYIPKSYTTPHLILFYSDWCFACL 781
K + L+ +C+ C
Sbjct: 125 -KQKLRPEP----LVWGEC-YCYKCF 144
>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional.
Length = 98
Score = 34.5 bits (79), Expect = 0.060
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
++ FY++WC C ++ P +++ E + + F V V +A + + S +P +
Sbjct: 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKM--VFVKVDVDELSEVAEKENITS-MPTFKVF 78
Query: 937 TDGR 940
+G
Sbjct: 79 KNGS 82
Score = 29.8 bits (67), Expect = 3.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDE 793
++ FY++WC C ++ P +++ E
Sbjct: 22 IVDFYAEWCGPCKRIAPFYEECSKE 46
>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional.
Length = 109
Score = 34.3 bits (78), Expect = 0.12
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 933
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 25 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 79
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
L +G + K + S ++ EF L
Sbjct: 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 36.5 bits (85), Expect = 0.14
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 641 ETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQY 698
+ LG+P A +L +RK Y R E+HPDK D EK +L Y L + +
Sbjct: 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE---EKMKRLNSLYKKLQE-GVKSAR 70
Query: 699 DLFGTTDG 706
FGT D
Sbjct: 71 QSFGTQDS 78
>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a')
subfamily; composed of the C-terminal redox active a'
domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI,
ERp72 and ERp57 are endoplasmic reticulum (ER)-resident
eukaryotic proteins involved in oxidative protein
folding. They are oxidases, catalyzing the formation of
disulfide bonds of newly synthesized polypeptides in the
ER. They also exhibit reductase activity in acting as
isomerases to correct any non-native disulfide bonds, as
well as chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. PDI and ERp57 have the abb'a'
domain structure (where a and a' are redox active TRX
domains while b and b' are redox inactive TRX-like
domains). PDI also contains an acidic region (c domain)
after the a' domain that is absent in ERp57. ERp72 has
an additional a domain at the N-terminus (a"abb'a'
domain structure). ERp57 interacts with the lectin
chaperones, calnexin and calreticulin, and specifically
promotes the oxidative folding of glycoproteins, while
PDI shows a wider substrate specificity. ERp72
associates with several ER chaperones and folding
factors to form complexes in the ER that bind nascent
proteins. EFP1 is a binding partner protein of thyroid
oxidase, which is responsible for the generation of
hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones.
Length = 104
Score = 33.7 bits (78), Expect = 0.15
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
L+ FY+ WC C + PI+++L ++L
Sbjct: 22 LVEFYAPWCGHCKALAPIYEELAEKLK 48
Score = 33.7 bits (78), Expect = 0.15
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELS 903
L+ FY+ WC C + PI+++L ++L
Sbjct: 22 LVEFYAPWCGHCKALAPIYEELAEKLK 48
>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain. This model
describes a domain of eukaryotic protein disulfide
isomerases, generally found in two copies. The high
cutoff for total score reflects the expectation of
finding both copies. The domain is similar to
thioredoxin but the redox-active disulfide region motif
is APWCGHCK [Protein fate, Protein folding and
stabilization].
Length = 102
Score = 33.0 bits (76), Expect = 0.25
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELS---PLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
L+ FY+ WC C + P ++KL EL + + V E+ LA R GV S P I
Sbjct: 17 LVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLA--KVDATAEKDLASRFGV-SGFPTI 73
Query: 934 ALLTDGRTSFFKEPSFSVQKMVEFFR 959
G+ E ++ +VEF
Sbjct: 74 KFFPKGKKPVDYEGGRDLEAIVEFVN 99
Score = 32.6 bits (75), Expect = 0.37
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
L+ FY+ WC C + P ++KL EL
Sbjct: 17 LVEFYAPWCGHCKNLAPEYEKLAKELK 43
>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional.
Length = 139
Score = 33.9 bits (78), Expect = 0.25
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
P +I F++ WC C PIF+ + E S V F V+ E+ L+ R + S +P I
Sbjct: 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRS-IPTI 110
Query: 934 ALLTDGR 940
+ +G+
Sbjct: 111 MIFKNGQ 117
>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Length = 94
Score = 32.7 bits (75), Expect = 0.27
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 22/104 (21%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRNFHNH 828
L+ F++ WC C P K+L ++L V V D + + +
Sbjct: 5 LLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLD---------RDEEEWKKYLKK 55
Query: 829 MYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSY 872
M + N PF + + + +L + IP
Sbjct: 56 MPKDW-------LNVPFGDKERNELLRL------YGVKAIPTLV 86
Score = 29.2 bits (66), Expect = 5.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 918
L+ F++ WC C P K+L ++L V V + ++
Sbjct: 5 LLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDE 46
>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed
of eukaryotic proteins similar to Saccharomyces
cerevisiae MPD1 protein, which contains a single redox
active TRX domain located at the N-terminus, and an ER
retention signal at the C-terminus indicative of an
ER-resident protein. MPD1 has been shown to suppress the
maturation defect of carboxypeptidase Y caused by
deletion of the yeast PDI1 gene. Other characterized
members of this subfamily include the Aspergillus niger
prpA protein and Giardia PDI-1. PrpA is non-essential to
strain viability, however, its transcript level is
induced by heterologous protein expression suggesting a
possible role in oxidative protein folding during high
protein production. Giardia PDI-1 has the ability to
refold scrambled RNase and exhibits transglutaminase
activity.
Length = 109
Score = 33.1 bits (76), Expect = 0.28
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 797
NF+K +YTT L+ FY+ WC C ++P + K EL L
Sbjct: 9 NFDKVVHNTNYTT--LVEFYAPWCGHCKNLKPEYAKAAKELDGL 50
Score = 33.1 bits (76), Expect = 0.28
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 905
NF+K +YTT L+ FY+ WC C ++P + K EL L
Sbjct: 9 NFDKVVHNTNYTT--LVEFYAPWCGHCKNLKPEYAKAAKELDGL 50
>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of
eukaryotic proteins similar to human TMX3, a TRX related
transmembrane protein containing one redox active TRX
domain at the N-terminus and a classical ER retrieval
sequence for type I transmembrane proteins at the
C-terminus. The TMX3 transcript is found in a variety of
tissues with the highest levels detected in skeletal
muscle and the heart. In vitro, TMX3 showed oxidase
activity albeit slightly lower than that of protein
disulfide isomerase.
Length = 104
Score = 31.7 bits (72), Expect = 0.68
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLG 798
L+ FY+ WC C ++EP++ ++ EL G
Sbjct: 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSG 48
Score = 31.7 bits (72), Expect = 0.68
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLG 906
L+ FY+ WC C ++EP++ ++ EL G
Sbjct: 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSG 48
>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional.
Length = 477
Score = 34.0 bits (78), Expect = 0.77
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGV 926
L+ FY+ WC C ++ P +KK L + +V E LA+ GV
Sbjct: 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV 104
Score = 30.9 bits (70), Expect = 6.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLG 798
L+ FY+ WC C ++ P +KK L
Sbjct: 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKK 82
>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase
(QSOX) subfamily; QSOX is a eukaryotic protein
containing an N-terminal redox active TRX domain,
similar to that of PDI, and a small C-terminal flavin
adenine dinucleotide (FAD)-binding domain homologous to
the yeast ERV1p protein. QSOX oxidizes thiol groups to
disulfides like PDI, however, unlike PDI, this oxidation
is accompanied by the reduction of oxygen to hydrogen
peroxide. QSOX is localized in high concentrations in
cells with heavy secretory load and prefers peptides and
proteins as substrates, not monothiols like glutathione.
Inside the cell, QSOX is found in the endoplasmic
reticulum and Golgi. The flow of reducing equivalents in
a QSOX-catalyzed reaction goes from the dithiol
substrate -> dithiol of the QSOX TRX domain -> dithiols
of the QSOX ERV1p domain -> FAD -> oxygen.
Length = 114
Score = 31.5 bits (72), Expect = 0.98
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 768 HLILFYSDWCFACLQVEPIFKKL 790
L+ FY+ WC C P +KKL
Sbjct: 22 WLVEFYASWCGHCRAFAPTWKKL 44
Score = 31.5 bits (72), Expect = 0.98
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 876 HLILFYSDWCFACLQVEPIFKKL 898
L+ FY+ WC C P +KKL
Sbjct: 22 WLVEFYASWCGHCRAFAPTWKKL 44
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 33.1 bits (76), Expect = 1.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
L+ FY+ WC C + PI+++L ++
Sbjct: 368 LVEFYAPWCGHCKNLAPIYEELAEKYK 394
Score = 33.1 bits (76), Expect = 1.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELS 903
L+ FY+ WC C + PI+++L ++
Sbjct: 368 LVEFYAPWCGHCKNLAPIYEELAEKYK 394
>gnl|CDD|239323 cd03025, DsbA_FrnE_like, DsbA family, FrnE-like subfamily; composed
of uncharacterized proteins containing a CXXC motif with
similarity to DsbA and FrnE. FrnE is presumed to be a
thiol oxidoreductase involved in polyketide
biosynthesis, specifically in the production of the
aromatic antibiotics frenolicin and nanaomycins.
Length = 193
Score = 32.3 bits (74), Expect = 1.2
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 769 LILFY---SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRNF 825
L F WC+ EP+ +KL +E V L G G + + +
Sbjct: 3 LYYFIDPLCGWCYGF---EPLLEKLKEEYGG----GIEVELHLGGLLPGNNARQITKQWR 55
Query: 826 HNHMYN---------PFDDVFSEGFNFPF 845
++ PF + + E F
Sbjct: 56 IYVHWHKARIALTGQPFGEDYLELLLFDL 84
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 32.1 bits (73), Expect = 1.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 651 LQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDL 700
L ++ Y+ L E HPD+ D A E+ L EAY L RR +Y L
Sbjct: 20 LDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 31.8 bits (72), Expect = 1.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 652 QEIRKNYKRLVVEWHPDKNNDPTAQEKFL------QLTEAYNILSDAERRKQYDL 700
+RK Y++L ++HPD + AQE+ L +AY+ L D RR +Y L
Sbjct: 6 SRLRKRYRQLQAQYHPDASG--MAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58
>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS)
reductase subfamily; composed of plant-type APS
reductases containing a C-terminal redox active TRX
domain and an N-terminal reductase domain which is part
of a superfamily that includes N type ATP PPases. APS
reductase catalyzes the reduction of activated sulfate
to sulfite, a key step in the biosynthesis of
sulfur-containing metabolites. Sulfate is first
activated by ATP sulfurylase, forming APS, which can be
phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate
(PAPS). Depending on the organism, either APS or PAPS
can be used for sulfate reduction. Prokaryotes and fungi
use PAPS, whereas plants use both APS and PAPS. Since
plant-type APS reductase uses glutathione (GSH) as its
electron donor, the C-terminal domain may function like
glutaredoxin, a GSH-dependent member of the TRX
superfamily. The flow of reducing equivalents goes from
GSH -> C-terminal TRX domain -> N-terminal reductase
domain -> APS. Plant-type APS reductase shows no
homology to that of dissimilatory sulfate-reducing
bacteria, which is an iron-sulfur flavoenzyme. Also
included in the alignment is EYE2 from Chlamydomonas
reinhardtii, a protein required for eyespot assembly.
Length = 109
Score = 30.5 bits (69), Expect = 1.9
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-LARRLGVGSQLPQI 933
L++ Y+ WC C +E +++L ++L+ V + EQ A+ P I
Sbjct: 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82
Query: 934 ALLTDGRTSFFKEPS 948
K PS
Sbjct: 83 LFFPKNSRQPIKYPS 97
>gnl|CDD|239250 cd02952, TRP14_like, Human TRX-related protein 14 (TRP14)-like
family; composed of proteins similar to TRP14, a 14kD
cytosolic protein that shows disulfide reductase
activity in vitro with a different substrate specificity
compared with another human cytosolic protein, TRX1.
TRP14 catalyzes the reduction of small
disulfide-containing peptides but does not reduce
disulfides of ribonucleotide reductase, peroxiredoxin
and methionine sulfoxide reductase, which are TRX1
substrates. TRP14 also plays a role in tumor necrosis
factor (TNF)-alpha signaling pathways, distinct from
that of TRX1. Its depletion promoted TNF-alpha induced
activation of c-Jun N-terminal kinase and
mitogen-activated protein kinases.
Length = 119
Score = 30.8 bits (70), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 878 ILFYSD-------WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 918
ILFY D WC C++ EP+ ++ + P F V +
Sbjct: 26 ILFYGDKDPDGQSWCPDCVKAEPVVREALKAA-PEDCVFIYCDVGDRP 72
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 29.8 bits (67), Expect = 3.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPD 668
Y+ L + TAS + IR+ +K+L++ HPD
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|129372 TIGR00271, TIGR00271, uncharacterized hydrophobic domain. This
domain is in a family of archaeal proteins that includes
AF0785 of Archaeoglobus fulgidus and in several
eubacterial proteins, including the much longer protein
sll1151 from Synechocystis PCC6803.
Length = 175
Score = 30.8 bits (70), Expect = 4.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1252 AVSLIFTVIIIVVLAMIMNHYM--KLEEEEIPSTTS 1285
A +L+ + ++V AMIM + KL +I S TS
Sbjct: 62 AKNLLLAMAFVIVFAMIMGLFHPSKLTVPQILSRTS 97
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This family
consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or programmed
cell death is a physiological form of cell death that
occurs in embryonic development and organ formation. It
is characterized by biochemical and morphological changes
such as DNA fragmentation and cell volume shrinkage. API5
is an anti apoptosis gene located in human chromosome 11,
whose expression prevents the programmed cell death that
occurs upon the deprivation of growth factors.
Length = 543
Score = 31.6 bits (71), Expect = 4.3
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 1272 YMKLEEEEIPSTTSSMRNHSVNKEKKHKETKQELKLHALRAETYNGLVVLLKPGCRTLIL 1331
MK + + + +M ++EK+ +TK++L LR T N ++ + K + +
Sbjct: 393 TMKKLTQGMSEHSKAMSTAKTDEEKEELKTKEQLTTTGLR--TCNNILAMTKDLFHSPPI 450
Query: 1332 FI 1333
F
Sbjct: 451 FK 452
>gnl|CDD|224632 COG1718, RIO1, Serine/threonine protein kinase involved in cell
cycle control [Signal transduction mechanisms / Cell
division and chromosome partitioning].
Length = 268
Score = 30.8 bits (70), Expect = 5.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 417 AQVFRAVTKEGVEVAVKVQYID 438
A V+ A T +G VAVK+
Sbjct: 62 ANVYLAETGDGRYVAVKIYRTS 83
>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46
(ERp46) subfamily; ERp46 is an ER-resident protein
containing three redox active TRX domains. Yeast
complementation studies show that ERp46 can substitute
for protein disulfide isomerase (PDI) function in vivo.
It has been detected in many tissues, however,
transcript and protein levels do not correlate in all
tissues, suggesting regulation at a posttranscriptional
level. An identical protein, named endoPDI, has been
identified as an endothelial PDI that is highly
expressed in the endothelium of tumors and hypoxic
lesions. It has a protective effect on cells exposed to
hypoxia.
Length = 102
Score = 29.2 bits (66), Expect = 5.9
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSP 796
H + F++ WC C ++ P +++L + +
Sbjct: 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47
Score = 29.2 bits (66), Expect = 5.9
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSP 904
H + F++ WC C ++ P +++L + +
Sbjct: 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47
>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain.
Length = 105
Score = 28.9 bits (65), Expect = 6.7
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH---------------NEQG 919
P L++F C C ++ K D L F ++V+ +E+
Sbjct: 7 PVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKE 66
Query: 920 LARRLGVGSQLPQIALLT-DGRT 941
LAR+ GV P I L DG+
Sbjct: 67 LARKYGVRGT-PTIVFLDGDGKE 88
>gnl|CDD|221836 pfam12893, Lumazine_bd_2, Putative lumazine-binding. This is a
family of uncharacterized proteins. However, the family
belongs to the NTF2-like superfamily of various enzymes,
and some of the members of the family are putative
dehydrogenases.
Length = 115
Score = 29.1 bits (66), Expect = 7.0
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 386 EVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQVFRAVTKE-----GVEVAVKVQYIDLR 440
++ + F D E P+ + + V G ++ ID
Sbjct: 24 KLRKAFHPDA------ALFGVTEGPLRRLPIEEYIARVKSRQPASPGAPRRRRILSID-- 75
Query: 441 ERFVGDIATVQTLLRIAGFLYP------KFDFQWVI 470
VGDIA + L + GF + K D +W I
Sbjct: 76 --VVGDIAMAKVELDMPGFNFTDYLTLLKIDGRWRI 109
>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of
proteins similar to human PDIR (for Protein Disulfide
Isomerase Related). PDIR is composed of three redox
active TRX (a) domains and an N-terminal redox inactive
TRX-like (b) domain. Similar to PDI, it is involved in
oxidative protein folding in the endoplasmic reticulum
(ER) through its isomerase and chaperone activities.
These activities are lower compared to PDI, probably due
to PDIR acting only on a subset of proteins. PDIR is
preferentially expressed in cells actively secreting
proteins and its expression is induced by stress.
Similar to PDI, the isomerase and chaperone activities
of PDIR are independent; CXXC mutants lacking isomerase
activity retain chaperone activity.
Length = 104
Score = 28.8 bits (65), Expect = 7.4
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQGLARRLGVGSQLP 931
L++FY+ WC C +++P F K EL G G L V P
Sbjct: 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFP 77
Query: 932 QIALLTDGRTSFFKEPSFSVQKMVEF 957
+G+ E + + ++EF
Sbjct: 78 TFKYFENGKFVEKYEGERTAEDIIEF 103
>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38
(ERp38) subfamily; composed of proteins similar to the
P5-like protein first isolated from alfalfa, which
contains two redox active TRX (a) domains at the
N-terminus, like human P5, and a C-terminal domain with
homology to the C-terminal domain of ERp29, unlike human
P5. The cDNA clone of this protein (named G1) was
isolated from an alfalfa cDNA library by screening with
human protein disulfide isomerase (PDI) cDNA. The G1
protein is constitutively expressed in all major organs
of the plant and its expression is induced by treatment
with tunicamycin, indicating that it may be a
glucose-regulated protein. The G1 homolog in the
eukaryotic social amoeba Dictyostelium discoideum is
also described as a P5-like protein, which is located in
the endoplasmic reticulum (ER) despite the absence of an
ER-retrieval signal. G1 homologs from Aspergillus niger
and Neurospora crassa have also been characterized, and
are named TIGA and ERp38, respectively. Also included in
the alignment is an atypical PDI from Leishmania
donovani containing a single a domain, and the
C-terminal a domain of a P5-like protein from Entamoeba
histolytica.
Length = 105
Score = 28.8 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 751 THWNFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIFKKL 790
T NF+K K L+ FY+ WC C + P ++KL
Sbjct: 6 TDSNFDKVVGDDKKDV---LVEFYAPWCGHCKNLAPEYEKL 43
Score = 28.8 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 859 THWNFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIFKKL 898
T NF+K K L+ FY+ WC C + P ++KL
Sbjct: 6 TDSNFDKVVGDDKKDV---LVEFYAPWCGHCKNLAPEYEKL 43
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 30.2 bits (69), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 950 SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVH 989
+ K++ F + LP+K IVP+SA D +D E K +
Sbjct: 132 VLLKLIAFLKKLLPFKEIVPISALKGDN-VDTLLEIIKEY 170
>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was
originally isolated from the cyanobacterium
Synechococcus. It is found only in oxygenic
photosynthetic organisms. TRX is a small enzyme that
participate in redox reactions, via the reversible
oxidation of an active site dithiol present in a CXXC
motif. Disruption of the txlA gene suggests that the
protein is involved in the redox regulation of the
structure and function of photosynthetic apparatus. The
plant homolog (designated as HCF164) is localized in the
chloroplast and is involved in the assembly of the
cytochrome b6f complex, which takes a central position
in photosynthetic electron transport.
Length = 142
Score = 29.2 bits (66), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKL 790
P L+ FY+DWC C ++ P KL
Sbjct: 22 PTLVEFYADWCTVCQEMAPDVAKL 45
Score = 29.2 bits (66), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKL 898
P L+ FY+DWC C ++ P KL
Sbjct: 22 PTLVEFYADWCTVCQEMAPDVAKL 45
>gnl|CDD|222358 pfam13743, Thioredoxin_5, Thioredoxin.
Length = 177
Score = 29.5 bits (67), Expect = 9.1
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 13/71 (18%)
Query: 771 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTD---------GFSGQDSA 821
LF C C +EP KL E F + + G G
Sbjct: 2 LFIDPLCPECWGIEPELLKLKLEYGK----KFDIRFIPLGNLKTLNRYMKKMPIDGDVWL 57
Query: 822 SRNFHNHMYNP 832
+ Y
Sbjct: 58 RNEPFSSPYLA 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 82,635,781
Number of extensions: 8421803
Number of successful extensions: 7312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7278
Number of HSP's successfully gapped: 134
Length of query: 1578
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1468
Effective length of database: 6,058,662
Effective search space: 8894115816
Effective search space used: 8894115816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.3 bits)