RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12972
(1578 letters)
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 153 bits (389), Expect = 2e-42
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
+ Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 697 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFE 756
+YD +G G Y + + F ++ +I +
Sbjct: 63 KYDKYG-EKGLEDN-------QGGQYESWSY-YRYDFGIYDDDPEIITLERREFDAAVNS 113
Query: 757 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH 805
+ FYS C C + P +++ E+ L + V+
Sbjct: 114 G--------ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVN 153
Score = 98.8 bits (246), Expect = 3e-23
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 19/162 (11%)
Query: 806 YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 865
YD +G G Y + + F ++ +I +
Sbjct: 64 YDKYGE-KGLEDN-------QGGQYESWSY-YRYDFGIYDDDPEIITLERREFDAAVNSG 114
Query: 866 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 925
+ FYS C C + P +++ E+ L + V+ +++ L R G
Sbjct: 115 --------ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKG 165
Query: 926 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLI 967
V S P + + G + S + +V F + +
Sbjct: 166 VNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVT 206
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 121 bits (305), Expect = 7e-30
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y LGV T L+ I+ Y+RL ++HPD + + A+ KF L EA+ +L D +RR +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 698 YDLFGTTDGFSGQDSASRNFHNHMYNP-FDDVFSEGF 733
YD G + FDD+FS F
Sbjct: 89 YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMF 125
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Length = 780
Score = 123 bits (309), Expect = 2e-28
Identities = 67/449 (14%), Positives = 129/449 (28%), Gaps = 71/449 (15%)
Query: 630 FINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNI 688
I + Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +
Sbjct: 14 HIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73
Query: 689 LSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKL 748
L D + RK+YD +G Q ++ + Y+ + +
Sbjct: 74 LKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS- 132
Query: 749 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDL 808
+ FYS + P +++ E+ L
Sbjct: 133 ----------------GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLR--------- 167
Query: 809 FGTTDGFSGQDSASRN----------FHNHMYNPFDDVFSEGFNFPFEEHDISLF----- 853
G + + F + + + +N + + F
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRS-------GMAAVKYNGDRSKESLVAFAMQHV 220
Query: 854 ----HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VG 908
+LST NF + + +C +L G V
Sbjct: 221 RSTVTELSTG--NFVNA---IETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVN 275
Query: 909 FFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIV 968
V + L + L + + ++ S ++ + + +
Sbjct: 276 VGWVDCDAQDSLCKSLDT-TASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNL 334
Query: 969 PLSATNVDAFLDNWREDNKVHALLF-----QRSLPVRLRYLINAFKHRTTIVFGVIVYDQ 1023
P L++ ++ + P + I D
Sbjct: 335 PDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLK--TLLKNEHIQVVRF--DC 390
Query: 1024 EDSSSVFQRFKVPGDKDSLLIFKEDKDRP 1052
+ + V + SL +FK +
Sbjct: 391 SSAPGICSDLYV--FQPSLAVFKGQGTKE 417
Score = 88.7 bits (219), Expect = 9e-18
Identities = 52/359 (14%), Positives = 113/359 (31%), Gaps = 49/359 (13%)
Query: 721 MYNPFDDVFSEGFNFPFEEHDISLF--HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCF 778
++ E + +DI F +++ P S P L+ F++ W
Sbjct: 409 VFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWSP 468
Query: 779 ACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFS 838
+ P +K L + T+ T + + P VF+
Sbjct: 469 PSRALLPELRKASTLLYG-QLKVGTLD----CTIHEGLCNMYNIQAY------PTTVVFN 517
Query: 839 EGFNFPFEEH----DISLFHK-------LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFA 887
+ +E H I F + +S T F + + + ++ FYS W
Sbjct: 518 QSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHP 577
Query: 888 CLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEP 947
+ P +K++ L+ L + +V + V + P+I + ++
Sbjct: 578 SQVLMPEWKRMARTLTGL-INVGSVDCGQYHSFCTQENV-QRYPEIRFYPQKSSKAYQYH 635
Query: 948 SF-----SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF--------Q 994
S+ + + LP + + L+ F + + + F Q
Sbjct: 636 SYNGWNRDAYSLRSWGLGFLP-QASIDLTPQT---FNEKVLQGKTHWVVDFYAPWSGPSQ 691
Query: 995 RSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPS 1053
P L K + + G + D + Q+ + S+ +++ ++ + S
Sbjct: 692 NFAPE-FELLARMIKGK--VRAGKV--DCQAYPQTCQKAGIKA-YPSVKLYQYERAKKS 744
Score = 87.1 bits (215), Expect = 3e-17
Identities = 35/315 (11%), Positives = 87/315 (27%), Gaps = 12/315 (3%)
Query: 823 RNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTT--PHLILF 880
+ + + +D + + E+ + + + F
Sbjct: 81 KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 140
Query: 881 YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 940
YS + P +++ E+ L + V+ +++ L R GV S P + + G
Sbjct: 141 YSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVNS-YPSLFIFRSGM 198
Query: 941 TSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF---QRSL 997
+ S + +V F + + LS N ++ + F
Sbjct: 199 AAVKYNGDRSKESLVAFAMQHVR-STVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDC 257
Query: 998 PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASIT 1057
L + + G + D + S+ + + + S
Sbjct: 258 LTSQTRLRLSGMLDGLVNVGWV--DCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSV 315
Query: 1058 MNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRR 1117
+ + + + L + S + L+ + V +A+ L++
Sbjct: 316 LFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGK--NENANDPELKK 373
Query: 1118 FAQESRFVHNNIAFM 1132
+ H +
Sbjct: 374 LKTLLKNEHIQVVRF 388
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 106 bits (266), Expect = 2e-27
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
DPY LGV RTAS +I+K YK+L EWHPDKN DP A+++F+Q+++AY ILS+ E+R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 698 YDLFGTTDGFSG 709
YD +G + SG
Sbjct: 78 YDHYG-SGPSSG 88
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 104 bits (263), Expect = 4e-27
Identities = 33/73 (45%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y+TLG+ R AS +EI++ Y+R + +HPDKN +P A+EKF ++ EAY++LSD +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 698 YDLFGTTDGFSGQ 710
+D +G +G G
Sbjct: 64 FDRYG-EEGLKGS 75
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 103 bits (258), Expect = 2e-26
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F + AY +LS+ E+RKQ
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 698 YDLFGTTDGFSG 709
YD FG + SG
Sbjct: 68 YDQFG-SGPSSG 78
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 103 bits (259), Expect = 3e-26
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 697 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 733
YD +G F F F D+F + F
Sbjct: 64 AYDQYG-HAAFEQGGMGGGGFGGGA--DFSDIFGDVF 97
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 102 bits (257), Expect = 5e-26
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
YE L VPR+AS +I+K Y+R ++WHPDKN N A++KF ++ EAY +LSD +R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 696 KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEH 740
+ YD +G +G +G + P G H
Sbjct: 63 EIYDRYG-REGLTGTGTGPSRAEAGSGGP-------GLEHHHHHH 99
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 102 bits (257), Expect = 6e-26
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
Y LG+ + A+ +I+K+Y++L +++HPDKN ++P A +KF ++ A+ IL+DA +R
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 697 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEG 732
YD +G + G + + F G
Sbjct: 78 IYDKYG-SLGLYVAEQFG-------EENVNTYFVSG 105
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 101 bits (253), Expect = 7e-26
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D Y+ LGVPR AS +EI+K Y +L ++HPD N +DP A+EKF QL EAY +LSD +RK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 697 QYDLFGTTDGFSG 709
QYD +G + SG
Sbjct: 68 QYDAYG-SGPSSG 79
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 100 bits (252), Expect = 2e-25
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
Y+ LGVP TA+ +I+ Y R +HPD+N A E+F ++++AY +L A R+
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 697 QYDLFGTTDGFSGQDSASRNF 717
+YD + S
Sbjct: 78 KYDRGL-LSDEDLRGPGSGPS 97
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 101 bits (253), Expect = 2e-25
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D Y LG +S+++I +K +E HPDK+ +P A E F +L +A IL++ E R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 697 QYDLFG---TTDGFSGQDSASRNFHN 719
+YD + + F ++ + +
Sbjct: 81 RYDHWRRSQMSMPFQQWEALNDSVKT 106
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 100 bits (251), Expect = 2e-25
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
Y+ LGVP++AS ++I+K + +L +++HPDKN P A+ KF ++ EAY LSDA RRK+
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 698 YDLFG 702
YD G
Sbjct: 68 YDTLG 72
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 100 bits (250), Expect = 2e-25
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
D YE L VPR AS + I+K Y++L ++WHPDKN N A+ +F Q+ EAY +LSDA++R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 696 KQYDLFGTTDGFSG 709
YD +G + SG
Sbjct: 70 DIYDRYG-SGPSSG 82
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 102 bits (256), Expect = 2e-25
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 690
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 691 DAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE 738
+ E +++YDL D +++ + F
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQV------YLEEMSWNEGDHSFY 112
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 98.9 bits (247), Expect = 7e-25
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
+ YE LGV +AS ++I+K Y++L + WHPDKN N A++KF ++EAY +LSD+++R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 696 KQYDLFGTTDGFSGQDSAS 714
YD G D + AS
Sbjct: 70 SLYDRAG-CDSWRAGGGAS 87
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 94.8 bits (236), Expect = 2e-23
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-------PTAQEKFLQLTEAYNILS 690
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 691 DAERRKQYDLFGTTDGFSG 709
+ E +K+YDL + SG
Sbjct: 77 NEETKKKYDLQR-SGPSSG 94
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 93.8 bits (234), Expect = 2e-23
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
Y+ LGV AS E++K Y+++ +++HPDKN P E+F Q+++AY +LSD ++R+
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 698 YDLFG 702
YD G
Sbjct: 67 YDQGG 71
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 93.9 bits (234), Expect = 5e-23
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
Y+ LGV +A+ QE++K Y++ +++HPDK EKF +++EA+ IL+D ++R+
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66
Query: 698 YDLFG 702
YD +G
Sbjct: 67 YDQYG 71
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 91.7 bits (228), Expect = 3e-22
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D ++ LGV AS E+ K Y++L V HPDK P +++ F + A L +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87
Query: 698 YD 699
Sbjct: 88 SS 89
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 92.1 bits (229), Expect = 3e-22
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 638 DPYETLGVPRTA-SLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDA 692
+ Y+ L V R Q++ K Y+ L + HPD+ + A+E+F + AY L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 693 ERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 728
E + YD + + + + P D+
Sbjct: 76 EAKTNYDYYL-DHPDQRFYNYYQYYRLRA-APKVDL 109
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 92.2 bits (229), Expect = 3e-22
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 638 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 695
+ LG+ R+A ++ +RK Y + E+HPDK D EK ++ Y + D +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65
Query: 696 KQYDLFGTTDGFSGQDSASRNFHNHMYNPF--DDVFSEGFNFPFEEHD 741
FG + + + +N F +++F ++
Sbjct: 66 AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 94.2 bits (234), Expect = 4e-22
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 638 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 695
+ LG+ R+A ++ +RK Y + E+HPDK D EK ++ Y + D +
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 68
Query: 696 KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDIS---LFHKLSTTH 752
FG + ++S N D ++ + + ++ + L L H
Sbjct: 69 AHQPDFGGFWDATEVFASSLNPG------VDAIYCKQWPECVKKMSTNCICLLCLLRMKH 122
Query: 753 WNFEKNY 759
N +
Sbjct: 123 ENRKLYR 129
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 82.8 bits (205), Expect = 3e-19
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 695
+ + E +K +RL ++WHPDKN N A E F L N L E++
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73
Query: 696 KQYDLFGTTDGFSGQ 710
D
Sbjct: 74 AFLDQNA-DRASRRT 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.9 bits (209), Expect = 2e-16
Identities = 113/783 (14%), Positives = 236/783 (30%), Gaps = 257/783 (32%)
Query: 233 HEFHEATNERPEFSASQQRRRSSYTVAVISFDYWWSLRDID----ED-------SEYYPS 281
H H +F + + + ++V + + + D +D E
Sbjct: 2 HHHHHM-----DFETGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDH 53
Query: 282 ILASVHQRSANRILSMCLTNGGLYIKLGQGMVS--LDHVLPRQYPHTLRALQDKCLLREK 339
I+ S S L L + + MV ++ VL Y + ++ + R+
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSPIKTEQ--RQP 105
Query: 340 GEVDQLFLEDFGCTHSQLFRS---FDENPIAAASLAQALQDKCLLREKGEVDQLFLE-DF 395
+ ++++E +L+ F + ++ L+ + LL + + ++
Sbjct: 106 SMMTRMYIE----QRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPA-KNVLIDGVL 159
Query: 396 GCTHSQLFRSFDENPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRERFVGDIATVQTLLR 455
G + + A + ++ K ++ +++ + + + +T+L
Sbjct: 160 GSGKTWV----------ALDVCLSYKVQCKMDFKIF----WLN-----LKNCNSPETVLE 200
Query: 456 IAGFLYPKFDFQWVIN-ELKVPLEQELDFLNEGRNAERCSKDLAHLPYVYIPRILWDKSS 514
+ L + D W + ++ + + + L PY
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPY------------ 243
Query: 515 TRVLTTEFIDGVKISDKEGLLEKGFSLADV-DRKLFTAFAEQIFQTGFVHADPHSGNDVN 573
+ LL L +V + K + AF
Sbjct: 244 ----------------ENCLL----VLLNVQNAKAWNAF--------------------- 262
Query: 574 TWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESPRMNFNLIMLWYTF----LLNVL 629
+L K +L TT R + L + + +L T + ++L
Sbjct: 263 ------NLSCK---ILLTT-R-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 630 --FINCAVSLDPYETLGV-PRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 684
+++C P E L PR S+ + IR W K+ + ++ +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESS- 362
Query: 685 AYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFP-------- 736
N+L AE RK +D VF + P
Sbjct: 363 -LNVLEPAEYRKMFDRLS-------------------------VFPPSAHIPTILLSLIW 396
Query: 737 ------FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKL 790
++ HK S EK + + P + Y + + + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSI---YLELKVKLENEYALHRSI 449
Query: 791 MDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRN-FHN----HMYNP----FDDVFSEGF 841
+D HY++ T D F++ H+ N +F F
Sbjct: 450 VD------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 842 -NFPFEEHDISLFHKLSTTHWNFE----------KNYIPKSYTTPHLILFYSDWCFACLQ 890
+F F E I + +T WN K Y K Y +
Sbjct: 498 LDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFY--KPYICDN-------------- 537
Query: 891 VEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS 950
+P +++L++ + + F + E + + + L +IAL+ + + F+E
Sbjct: 538 -DPKYERLVNAI----LDF--LPKIEENLICSKY---TDLLRIALMAED-EAIFEEAHKQ 586
Query: 951 VQK 953
VQ+
Sbjct: 587 VQR 589
Score = 71.4 bits (174), Expect = 2e-12
Identities = 104/651 (15%), Positives = 194/651 (29%), Gaps = 181/651 (27%)
Query: 826 HNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWC 885
H + Y VF + F F+ D+ K + + + K + L LF W
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WT 70
Query: 886 FACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFK 945
+ E + +K ++E+ + F + EQ +
Sbjct: 71 L-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--------------------------R 103
Query: 946 EPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI 1005
+PS + +E R +L Y + NV R L +++L + LR
Sbjct: 104 QPSMMTRMYIEQ-RDRL-YNDNQVFAKYNV------SRLQ-PYLKL--RQAL-LELR--- 148
Query: 1006 NAFKHRTTIVFG-------VIVYDQEDSSSVFQRF----------KVPGDKDSL-----L 1043
+ ++ G + D S V + + L L
Sbjct: 149 ---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1044 IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSM--LDAVCPVKKL----- 1096
+++ D + S S ++I + + I L + + L V K
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 1097 -CVVLF-SEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPE--FVNAL-TSPED 1151
C +L + D H+++ + + + L P+D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTLT----PDEVKSLLLKYLDCRPQD 317
Query: 1152 SSE---------ISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVN 1202
+S+ IA R WK N D+L + S +N
Sbjct: 318 LPREVLTTNPRRLSI-IAESIRDGLATWDN----------WKHVN--CDKLTTIIESSLN 364
Query: 1203 --DPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAV-SLIFTV 1259
+P E + L +F S HI + SLI+
Sbjct: 365 VLEPA----------EYRKMF-DRLS------VF------PPSA---HIPTILLSLIWFD 398
Query: 1260 IIIVVLAMIMNHYMK--LEEEEIPSTTSSMRNHSVNKEKKHKETKQELKLHALRAETYNG 1317
+I + +++N K L E++ +T S+ S+ E K K + E LH + YN
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVK-LENEYALHRSIVDHYNI 455
Query: 1318 LVVLLKPGCRTLILFIDNKSSRKLVSKFHAMVWPYRKNKSLMFGYL-----NIERKQSRE 1372
+ ++D Y + ++ NIE +
Sbjct: 456 PKTFDSDDL--IPPYLDQ----------------Y------FYSHIGHHLKNIEHPERMT 491
Query: 1373 WFKDILLE------ALPPDTPLAINPRNCIGTVLSINGYRKYFCMYHAKLT 1417
F+ + L+ + D+ + + T+ + Y+ Y C K
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 71.4 bits (174), Expect = 2e-12
Identities = 107/683 (15%), Positives = 196/683 (28%), Gaps = 207/683 (30%)
Query: 956 EFFRLKLPYKLIVPLSATNVDAFLDNWR----ED--------NKVHALLFQRSLPVRLRY 1003
E + YK I+ + DAF+DN+ +D ++ ++ +
Sbjct: 10 ETGEHQYQYKDILSV---FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 1004 LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS---LL--IFKEDKDRPSASITM 1058
L F ++ QE + Q+F + + L+ I E + PS M
Sbjct: 67 L-----------FWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRM 111
Query: 1059 NSIPVPTLQDITDNNPY--LTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRH--- 1113
L DN + + R+ P KL L E P +
Sbjct: 112 YIEQRDRLY--NDNQVFAKYNVSRLQ---------PYLKLRQALL-ELRPAKNVLIDGVL 159
Query: 1114 ----------TLRRFAQESRFVHNNIAFMYVFIEKQPEFV-------------NALTSPE 1150
+ + + I ++ + PE V N + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 1151 DSSEISLHIAA--------MWRMDYKKIKYGWLLGDAVDD------WKDYN-------TT 1189
SS I L I + + Y+ LL + + W +N TT
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENC----LL--VLLNVQNAKAWNAFNLSCKILLTT 272
Query: 1190 KDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQ-- 1247
+ + + + +L S + + ++ Q L R+
Sbjct: 273 RFK------QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVL 323
Query: 1248 HILP-AVSLIFTVIIIVVLAMIMNHYMKLEEEEIPSTTSSMRNHSVNKEKKHKETKQELK 1306
P +S+I I + +T + ++ VN +K T E
Sbjct: 324 TTNPRRLSII--------AESIRDG---------LATWDNWKH--VNCDKL--TTIIESS 362
Query: 1307 LHALRA----ETYNGLVVLLK----PGCRTL-ILFIDNKSS--RKLVSKFHAMVWPYRKN 1355
L+ L + ++ L V P L +++ D S +V+K H
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLH--------K 413
Query: 1356 KSLMFGYLNIERKQSREWFKDILLEALPPDTPLAINPRNCIGTVLSINGYRKYFCMYHAK 1415
SL + + K+S I LE R+ + + Y
Sbjct: 414 YSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSIV------DHYNIPKTFDSDD 463
Query: 1416 LTGQYGSKSKDNTIKGKGLGAYLGYNDSDYSDTDEEADLERGLHKHKAEPPPEY-LLEDK 1474
L Y D +++G+ H E P L
Sbjct: 464 LIPPY----LDQYFY-----SHIGH------------------HLKNIEHPERMTLFRMV 496
Query: 1475 LLDGFPNWLDRLFEGTTPRFYVEAWPTNYLMVFPTVLIRKGQDKKAELVILD-HGLYEEV 1533
LD F +L++ + + N L K + I D YE +
Sbjct: 497 FLD-F-RFLEQKIRHDSTAWNASGSILNTLQQL----------KFYKPYICDNDPKYERL 544
Query: 1534 PSDIRESLCSLWKAIALNNHTDM 1556
+ I + L + + + + +TD+
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL 567
Score = 68.7 bits (167), Expect = 1e-11
Identities = 96/640 (15%), Positives = 173/640 (27%), Gaps = 166/640 (25%)
Query: 145 FLEDFGCTHSQLFRSFDENPIAAASLAQSMVTDEALGIK--------LHEFHEATNERPD 196
F+++F C Q D S+ D + K L + E
Sbjct: 29 FVDNFDCKDVQ-----DM----PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 197 HEFHEATNERPDHEF-----HEATNER--PDHEFHEATNE--RPDHEFHEATNERPEF-- 245
+F E R +++F + + E + + F + R +
Sbjct: 80 QKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 246 ---SASQQRRRSSY-----------TVAVISFDYWWSLRDIDEDSEYYPSI--LASVHQR 289
A + R + T + + I L +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALD-----VCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 290 SANRILSMCLTNGGLYIKLGQGMVSL-DHVLPRQYPHTLRALQDK------------CLL 336
S +L M L L ++ S DH + ++Q + CLL
Sbjct: 194 SPETVLEM-LQK--LLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 337 -----REKGEVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQ----ALQDKCLLREKGEV 387
+ + F + C L + + S A +L + EV
Sbjct: 249 VLLNVQNAKAWN-AF--NLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 388 DQLFLEDFGCTHSQLFRS-FDENPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRERFVGD 446
L L+ C L R NP + +A ++G
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIRDG------------------- 340
Query: 447 IATVQTLLRIAGFLYPKFDFQWVINELKVPLEQELDFLNEGRNAERCSKDLAHLPY-VYI 505
L + + D +L +E L+ L + L+ P +I
Sbjct: 341 ------LATWDNWKHVNCD------KLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHI 387
Query: 506 PR----ILWDKSSTRVLTTEFIDGVKISDKEGLLEKG-----FSLADVDRKLFTAFAEQI 556
P ++W + V K L+EK S+ + +L ++
Sbjct: 388 PTILLSLIWFDVIKSD--VMVV--VNKLHKYSLVEKQPKESTISIPSIYLEL----KVKL 439
Query: 557 FQTGFVHADPHSGNDVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEW--------NPLE 608
+H + V+ Y ++ F D Y + +E
Sbjct: 440 ENEYALHR-----SIVDH--Y--NIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIE 485
Query: 609 ESPRMN-FNLIMLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHP 667
RM F ++ L + FL + S + + T LQ+++ YK + + P
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNT--LQQLKF-YKPYICDNDP 539
Query: 668 DKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGF 707
A FL E I S + L +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 61.8 bits (149), Expect = 2e-09
Identities = 67/497 (13%), Positives = 132/497 (26%), Gaps = 168/497 (33%)
Query: 1136 IEKQPEFVNALTSPEDSSEISL----------HIAAMWRMDYKKIKYGWLLG-------D 1178
I + E + + S + S + + + +I Y +L+
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 1179 AVDDWKDYNTTKDRLDAGLRSL----VN--DPYNNLLYDTALKEISDEYIQSLGVRIFNR 1232
+ Y +DRL + V+ PY L AL E+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPA----------KN 152
Query: 1233 IFMH----------IEMAQQSLSRQHILPA----VSLIFTVIIIVVLAMIMNHYMKLEEE 1278
+ + S Q + ++L VL M+ +++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 1279 EIPSTTSSMRNHSVNKEKKHKETKQELKLHALRAETY-NGLVVL-----------LKPGC 1326
+S +HS N + + + EL+ L+++ Y N L+VL C
Sbjct: 213 -----WTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 1327 RTLILFIDNKSSRKLVSKFHAMVWPYRKNKSLMFGYLNIERKQSREWFKDIL---LEALP 1383
+ L+ + + L + + SL + + + + L + LP
Sbjct: 267 KILLTTRFKQVTDFLSAA-------TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 1384 PDTPLAINPRNC--IGTVLSINGYR-KYFCMYHAKLTGQYGSKSKDNTIKGKGLGAYLGY 1440
+ L NPR I + + I
Sbjct: 320 REV-LTTNPRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTII----------- 359
Query: 1441 NDSDYSDTDEEADLERGLHKHKAEPPPEYLLEDKLLDGFPNWLDRLFEGTTPRFYVEAWP 1500
E+ L P EY ++F+
Sbjct: 360 ----------ESSLN-------VLEPAEYR--------------KMFD------------ 376
Query: 1501 TNYLMVFPTVLIRKGQDKKAELVILDHGLYEEVPSDIRESLCSLWKAIALNNHTDMRTYS 1560
L VFP +P+ + L +W + ++ +
Sbjct: 377 --RLSVFP-------PSAH-------------IPTIL---LSLIWFDVIKSDVMVVVNKL 411
Query: 1561 KRLGVSEKDYRLFSIAI 1577
+ + EK + +I+I
Sbjct: 412 HKYSLVEKQPKESTISI 428
Score = 50.2 bits (119), Expect = 6e-06
Identities = 70/561 (12%), Positives = 166/561 (29%), Gaps = 166/561 (29%)
Query: 32 LNKQRQRSVITH-LGGI-KRFIRSSYTVAVIS-------FD---YWWSLRDIDEDSEYYP 79
L + ++V+ + G K + + V D +W +L++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-L 199
Query: 80 SILASVHQRSANRILSMCLTNGGLYIKLGQGMVSLDHVLP-RQYPHTLRALQDKCLLREK 138
+L + + S + + +++ L +L + Y + L L + ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNA 256
Query: 139 GEVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQSMVTDEALGIKLHEFHEATNERPDHE 198
+ F + C L + + VTD L
Sbjct: 257 KAWN-AF--NLSCK--ILLTTRFKQ-----------VTD-FLS-------------AATT 286
Query: 199 FHEATNERPDHEFHEATNERPDHEFHEATNERPDHEFHEATNERPEFSASQQRRRSSYTV 258
H + + + + + RP E P +
Sbjct: 287 THISLDHHSM-TLTPDEVKS---LLLKYLDCRPQDLPREVLTTNP------------RRL 330
Query: 259 AVISFDYWWSLRDIDEDSEYYPSILASVHQRSANRILSMCLTN------GGLYIKLGQGM 312
++I S+RD + + + I+ L ++ +L
Sbjct: 331 SII----AESIRDGLATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLS--- 379
Query: 313 VSLDHVLPRQYPHTLRALQDKCLL--REKGEVDQLFLEDFGCTHSQLFRSFDENPIAAAS 370
V P L L+ + + +S + + E+ I+ S
Sbjct: 380 -----VFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPS 430
Query: 371 LAQALQDKCLLREKGEVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQVFRAVTKEGVEV 430
+ L+ K + + + ++ H + ++FD + + L Q F
Sbjct: 431 IYLELKVKL--ENEYALHRSIVD-----HYNIPKTFDSDDLIPPYLDQYF---------- 473
Query: 431 AVKVQYI-------DLRERFVGDIATVQTLLRIAGFLYPKFDFQWVINELK--------- 474
+I + ER TL R+ ++ DF+++ +++
Sbjct: 474 ---YSHIGHHLKNIEHPERM--------TLFRM---VF--LDFRFLEQKIRHDSTAWNAS 517
Query: 475 ---VPLEQELDF------LNEGRNAERCSKDLAHLPYVYIPRILWDKSSTRVLTTEFIDG 525
+ Q+L F N+ + ER + ++P+I ++ +++ D
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKY-ERLVNAILD----FLPKI-----EENLICSKYTDL 567
Query: 526 VKIS---DKEGLLEKGFSLAD 543
++I+ + E + E+
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQ 588
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 70.0 bits (171), Expect = 8e-15
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 636 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 693
E L +PR +++ YK+ + HPDK +L +
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH---ALMQELNSLWGTFKTEV 66
Query: 694 RRKQYDLFGTTD 705
+ +L GT
Sbjct: 67 YNLRMNLGGTGF 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.4 bits (190), Expect = 3e-14
Identities = 99/595 (16%), Positives = 181/595 (30%), Gaps = 212/595 (35%)
Query: 293 RILSMCLTNGGLYIKLGQGMVSLDHVLPRQYPHTL--RALQDKCLLREKGEVDQLFLEDF 350
R L+ L++G SL+HVL P A Q L+E F
Sbjct: 7 RPLT--LSHG-----------SLEHVLL--VPTASFFIASQ----LQE----------QF 37
Query: 351 GCTHSQLFRSF--DENPIAAASL--------AQALQDKCLLREKGEVDQLFLEDFGCT-- 398
+ F D+ P A L + ++ + + +V L L +F
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV-GQFDQVLNLCLTEFENCYL 96
Query: 399 -----HS-----------------QLFRSF------DENPIAAASLAQVFRAVTKEGVEV 430
H+ +L +++ + P S + +FRAV + ++
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 431 AVKV---Q-----YID-LRERF------VGDI-----ATVQTLLRI---AGFLYPK-FDF 466
+ Q Y + LR+ + VGD+ T+ L+R A ++ + +
Sbjct: 157 VA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 467 -QWVINELKVPLEQELDFLNEGRNAERCS----------KDLAHLPYVYIPRILWDKSST 515
+W+ N P + D+L S LAH YV ++L
Sbjct: 216 LEWLENPSNTP---DKDYL--------LSIPISCPLIGVIQLAH--YVVTAKLL------ 256
Query: 516 RVLTTEFIDGVKISDKEGLLEKG--------FSLADVDRKLFTAFAEQI---FQTGFVHA 564
E +K G + D F + + I F G V
Sbjct: 257 GFTPGELRSYLK-----GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-VRC 310
Query: 565 DPHSGNDVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESPRMNFNLIMLWYTF 624
+ YP L ++ ED ++ E P SP M ++ L
Sbjct: 311 --YE-------AYP-------NTSLPPSILED-SLENNEGVP---SP-M-LSISNLTQEQ 348
Query: 625 LLNVLF-INCAVSLDPYETLGV-----PR-------TASLQEIRKNYKRLVVEWHPDKNN 671
+ + + N L + + + + SL + ++ D++
Sbjct: 349 VQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 672 DPTAQEK------FLQLTEAYN--ILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYN 723
P ++ K FL + ++ +L A DL F+ +D +Y+
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-----IQIPVYD 461
Query: 724 PFDDVFSEGFNFPFEEHDISLFHKL------STTHWNFEKNYIPKSYTTPHLILF 772
FD G + S+ ++ W E + H++ F
Sbjct: 462 TFD-----GSD--LRVLSGSISERIVDCIIRLPVKW--ETT---TQFKATHILDF 504
Score = 59.7 bits (144), Expect = 8e-09
Identities = 105/589 (17%), Positives = 166/589 (28%), Gaps = 196/589 (33%)
Query: 511 DKSSTRVLTTEFIDGVKISDKEGLLEKGFSLADVDRKLFTAFAEQI---FQ-------TG 560
D STR LT +S G LE V F A Q+ F G
Sbjct: 2 DAYSTRPLT--------LS--HGSLEHVLL---VPTASF-FIASQLQEQFNKILPEPTEG 47
Query: 561 FVHAD-PHSGNDVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNPLEESPRMNFNLIM 619
F D P + P +L KF L ++L E G+++ + L +
Sbjct: 48 FAADDEPTT---------PAELVGKF-LGYVSSLVEPS--KVGQFDQV---------LNL 86
Query: 620 LWYTFLLNVLF---INC-AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTA 675
F L I+ A L + +T L I+ ++ P +A
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSA 144
Query: 676 QEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSAS------RNFHNHMYNPFDDVF 729
L A + +FG GQ + R+ + Y+
Sbjct: 145 ------LFRA----VGEGNAQLVAIFG------GQGNTDDYFEELRDLYQ-TYHVLVGDL 187
Query: 730 SEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKK 789
+ +L T + EK + + W L+ P
Sbjct: 188 -------IKFSA-ETLSELIRTTLDAEKVF-------TQGLNILE-W----LE-NPSNTP 226
Query: 790 LMDELS------PLGVGFF-TVHYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFN 842
D L PL +G HY + GF+ + +
Sbjct: 227 DKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFT---------PGELRSYLKGATGHS-- 274
Query: 843 FPFEEHDI--SLFHKLSTTHW-NFEKNYIPKSYTTPHLILFYSDWC-FACLQVEPIF--- 895
+ ++ + + W +F + K+ T +LF + C + P
Sbjct: 275 -----QGLVTAVAIAETDS-WESFFVSVR-KAIT----VLF---FIGVRCYEAYPNTSLP 320
Query: 896 -KKLMDEL-------SP-LGV-GFFTVHVHNEQGLARRLGVGSQLP---QIAL-LTDGRT 941
L D L SP L + V Q + S LP Q+ + L +G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQV---QDYVNK--TNSHLPAGKQVEISLVNGAK 375
Query: 942 SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL 1001
+ V V L Y L + L + LD R +R L
Sbjct: 376 NL-------V---VSGPPQSL-YGLNLTLRKAKAPSGLDQSR------IPFSERKLKFSN 418
Query: 1002 RYL-INA-FKH----------------RTTIVF-----GVIVYDQEDSS 1027
R+L + + F H + + F + VYD D S
Sbjct: 419 RFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 56.6 bits (136), Expect = 8e-08
Identities = 94/583 (16%), Positives = 161/583 (27%), Gaps = 205/583 (35%)
Query: 92 RILSMCLTNGGLYIKLGQGMVSLDHVLPRQYPHTL--RALQDKCLLREKGEVDQLFLEDF 149
R L+ L++G SL+HVL P A Q L+E F
Sbjct: 7 RPLT--LSHG-----------SLEHVLL--VPTASFFIASQ----LQE----------QF 37
Query: 150 GCTHSQLFRSF--DENPIAAASLAQSMVTDEALGIKLHEFHEATNERPDHEFHEATNERP 207
+ F D+ P A L LG + + D + E
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKF-----LGYVSSLVEPSKVGQFDQVLNLCLTE-- 90
Query: 208 DHEFHEA---TNERPDHEFHEATNERPDHEFHEATNERPEFSASQQRRRSSYTVAVISFD 264
F N+ H + +++ ++ Y A I
Sbjct: 91 ---FENCYLEGND-----IHALAAKLL-------QENDTTLVKTKELIKN-YITARIM-- 132
Query: 265 YWWSLRDIDEDSEYYPSILASVHQRSANRILSMCLTNGGLYIKLGQGMVSLDHVLPRQYP 324
+ R D+ S S L +++++ G GQG Y
Sbjct: 133 ---AKRPFDKKS---NSALFRAVGEGNAQLVAIF----G-----GQGN-------TDDY- 169
Query: 325 HTLRALQDKCLLREKGEVDQLFLEDFGCTHSQLFRSFDENPIAAASL-AQALQDKCLLRE 383
++ LR+ + + + D ++ + A + Q L L
Sbjct: 170 -----FEE---LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 384 KGEV-DQLFLEDFGCTHS-------QL------FRSFDENPIAAASLAQVFRAVT--KEG 427
D+ +L S QL + P L + T +G
Sbjct: 222 PSNTPDKDYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQG 276
Query: 428 VEVAVKVQYIDLRERFVGDIATVQTLLRIAGF----LYPKFDF------QWVINELKVP- 476
+ AV + D E F + T+L G YP + N VP
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 477 ------------LEQELDFLNEGRNAERCSKDLAHLP---YVYI-----PRILWDKSSTR 516
++ ++ N +HLP V I + L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTN------------SHLPAGKQVEISLVNGAKNL------- 377
Query: 517 VLT--TEFIDGVKISDKEGLLEKGFSLADVD--------RKLFTAFAEQIFQTGF--VHA 564
V++ + + G+ ++ L K + + +D RKL F F V +
Sbjct: 378 VVSGPPQSLYGLNLT-----LRKAKAPSGLDQSRIPFSERKL-------KFSNRFLPVAS 425
Query: 565 DP-HSGNDVNTWLYPVDLGDKFRLVLATTLREDGYPDSGEWNP 606
P HS L P + + +D ++ +N
Sbjct: 426 -PFHS-----HLLVPA----------SDLINKDLVKNNVSFNA 452
Score = 51.2 bits (122), Expect = 3e-06
Identities = 73/515 (14%), Positives = 126/515 (24%), Gaps = 224/515 (43%)
Query: 7 QRGRLKEIAIFGLCVTGLSGVTYGSLNKQRQRSVITHLGGIKRFIRSSYTVAVISFDYWW 66
G + +AIFG G Q G DY+
Sbjct: 150 GEGNAQLVAIFG----G-----------Q---------GNTD--------------DYFE 171
Query: 67 SLRDIDEDSEY--YPSILASVHQRSANRILSMCLTNGGLYIKLGQGMVSLDHVLPRQYPH 124
LRD+ Y Y ++ + + SA + ++ + +
Sbjct: 172 ELRDL-----YQTYHVLVGDLIKFSAETL---------------SELIRTTLDAEKVFTQ 211
Query: 125 TLRALQDKCLLREKGE------------------VDQL-----FLEDFGCTHSQLFRSF- 160
L L+ L V QL + G T +L
Sbjct: 212 GLNILE---WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 161 -----DENPIAAASLAQSMVTDEALGIKLHEFHEATNERPDHEFHEATNERPDHEFHEAT 215
+ + A ++A++ + E F + + F +EA
Sbjct: 269 GATGHSQGLVTAVAIAETD-SWE-------SFFVSVRKAITVLFFIGV------RCYEAY 314
Query: 216 NERPDHEFHEATNERPDHEFHEATNERPEFSASQQRRRSSYTVAVISFDYWWSLRDIDED 275
P+ + E + E P S +++ + +++
Sbjct: 315 ---PNTSLPPSILE----DSLENNEGVP-----------SPMLSISNLTQEQVQDYVNKT 356
Query: 276 SEYYPSILASVHQRSANRILSMCLTNGGLYIKLGQGMVSLDHVLPRQY-----PHTLRAL 330
+ + P A + + + L NG + P +L L
Sbjct: 357 NSHLP----------AGKQVEISLVNG-----------------AKNLVVSGPPQSLYGL 389
Query: 331 --------------QDKCLLRE-KGEVDQLFL---EDFGCTHSQLFRSFDENPIAAASLA 372
Q + E K + FL F HS L A+ +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHLLVP------ASDLIN 440
Query: 373 QALQDKCL-------------------LREKGE------VDQLFLE--------DFGCTH 399
+ L + LR VD + F TH
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 400 SQLFRSFDENPIAAASLAQVFRAVTKEG--VEVAV 432
F P A+ L + K+G V V V
Sbjct: 501 ---ILDFG--PGGASGLGVLTHRN-KDGTGVRVIV 529
Score = 42.7 bits (100), Expect = 0.001
Identities = 71/348 (20%), Positives = 114/348 (32%), Gaps = 123/348 (35%)
Query: 248 SQQR-----RRSSYTVAVISFD---------YWWSLRDIDEDSEYYPSILASVHQRSANR 293
SQ++ + A ++ Y +S+ DI + P L +H
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN---NPVNLT-IH------ 1675
Query: 294 ILSMCLTNGGLYIKLGQGMVSLDHVLPRQ-YP-HTLRALQDKCLLREK--GEVDQLFLE- 348
GG + G+ + R+ Y + D L EK E+++
Sbjct: 1676 -------FGG---EKGKRI--------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 349 DFGCTHSQLFRSFDEN--P-IAAASLAQALQDKCLLREKGEV--DQLFLEDFGCTHSQL- 402
F L + + P + A A +D L+ KG + D F G HS L
Sbjct: 1718 TFRSEKGLLSAT--QFTQPALTLMEKA-AFED---LKSKGLIPADATFA---G--HS-LG 1765
Query: 403 -FRSFDENPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRER--FVGDIATVQTLLR---- 455
+ + A ASLA V +E V+V + R + L R
Sbjct: 1766 EY-A------ALASLADVM------SIESLVEV----VFYRGMTMQVAVPRDELGRSNYG 1808
Query: 456 -IA---GFLYPKFD---FQWVINELKVPLEQELDFL---NEGRNAER----CSKDLAHLP 501
IA G + F Q+V+ + ++ + N N E + DL L
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVG---KRTGWLVEIVNY--NVENQQYVAAGDLRALD 1863
Query: 502 YVYIPRILWDKSSTRVLTTEFIDGVKISDKEGLLEKGFSLADVDRKLF 549
V T VL + + I + L+K SL +V+ LF
Sbjct: 1864 TV-----------TNVLNFIKLQKIDIIE----LQKSLSLEEVEGHLF 1896
Score = 38.5 bits (89), Expect = 0.021
Identities = 99/615 (16%), Positives = 167/615 (27%), Gaps = 233/615 (37%)
Query: 748 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
L+ +H + E P + + F Q++ F K++ E
Sbjct: 9 LTLSHGSLEH-----VLLVPT-----ASF-FIASQLQEQFNKILPE-------------- 43
Query: 808 LFGTTDGFSGQDSAS--------------RNFHNHMYNPFDDVFSEGFNFPFEEH----- 848
T+GF+ D + FD V + FE
Sbjct: 44 ---PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGN 99
Query: 849 DISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVG 908
DI H L+ + K+ LI Y A + + F K + S L
Sbjct: 100 DI---HALAAKLLQENDTTLVKTK---ELIKNYIT---ARIMAKRPFDKKSN--SAL--- 145
Query: 909 FFTVHVHNEQGLARRLGV-GSQLPQIALLTDGRT-SFFKEPSFSVQKMVEFFRLKLPYKL 966
F +G A+ + + G Q G T +F+E + + ++ Y
Sbjct: 146 -FR---AVGEGNAQLVAIFGGQ---------GNTDDYFEE-------LRDLYQT---YH- 181
Query: 967 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDS 1026
L V + A ++ D+
Sbjct: 182 --VL----VGDLIK-------FSAETLSE-----------------------LIRTTLDA 205
Query: 1027 SSVFQRFKVPG-DKDSLLIFKEDKDRPSASITMNSIPV--P---TLQ--------DITDN 1072
VF + G + L + + P + SIP+ P +Q +
Sbjct: 206 EKVFTQ----GLNILEWL--ENPSNTPDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 1073 NPYLTLPRIS-----SQSMLDAVCP------------VKKLCVVLFSEDSPEHDASRHTL 1115
P + SQ ++ AV V+K VLF ++A +T
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 1116 RRFAQESRFVHNNI---AFM-------YVFIEKQPEFVNALTSPEDSSEISLHIAAM--- 1162
+ + NN + M ++ N+ EISL A
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 1163 --------------------------WRMDY--KKIKYGW------------LLGDAVDD 1182
R+ + +K+K+ LL A D
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 1183 WKDYNTTKDRLDAGLRSLVND---PYNNLLYDTA----LKEISDEYIQSLGVRIFNRIFM 1235
KD + + D P +YDT L+ +S + + V R+ +
Sbjct: 439 -----INKDLVKNNVSFNAKDIQIP----VYDTFDGSDLRVLSGSISERI-VDCIIRLPV 488
Query: 1236 HIEMAQQSLSRQHIL 1250
E Q HIL
Sbjct: 489 KWETTTQ-FKATHIL 502
Score = 35.4 bits (81), Expect = 0.19
Identities = 58/376 (15%), Positives = 106/376 (28%), Gaps = 162/376 (43%)
Query: 1264 VLAMIMNHYMK--LEEEEIPSTTSSMRNHSVNKE-KKHKETKQELKLHALRAETYNGLVV 1320
VL + + + LE +I H++ + + +T ++ ++
Sbjct: 83 VLNLCLTEFENCYLEGNDI---------HALAAKLLQENDTTLVKTKELIKN-YITARIM 132
Query: 1321 LLKPGCRTLILFIDNKSSRKLVSKFHAMVWPYRKNKSLM--FGYLNIERKQ--SREWFKD 1376
+P D KS+ L F A+ N L+ FG Q + ++F++
Sbjct: 133 AKRP--------FDKKSNSAL---FRAVG---EGNAQLVAIFG------GQGNTDDYFEE 172
Query: 1377 ILLEALPPDTPLAINPRNCIGTVLSINGYRKY------FCMYHAK-LTGQYGSKSKDNTI 1429
L L Y+ Y + A+ L+ + +
Sbjct: 173 --LRDL----------------------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 1430 KGKGLGAYLGYNDSDYSDTDEEADLERGLHKHKAEPPPEYLLED---------------- 1473
+GL ++ L P +YLL
Sbjct: 209 FTQGL------------------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 1474 ---KLLDGFPNWLDRLFEGTTPR------------------------------FYV---- 1496
KLL P L +G T F++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 1497 -EAWPTNYLMVFPTVLIRKGQDKKAELVILDHGLYEEVPS---DIR-ESLCSLWKAI-AL 1550
EA+P L P++L +D L++ E VPS I + + +
Sbjct: 311 YEAYPNTSLP--PSIL----ED------SLENN--EGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 1551 NNHTDMRTYSKRLGVS 1566
N+H K++ +S
Sbjct: 357 NSHLPA---GKQVEIS 369
Score = 32.3 bits (73), Expect = 1.6
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 33/134 (24%)
Query: 818 QDSASRNFHNHM----YNPFD---DVFSEGFNFPFEEHDISLFH------KLSTTHWNFE 864
Q S + M Y DV++ N + + S+ T H+ E
Sbjct: 1624 QGSQEQG----MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 865 K-NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 923
K I ++Y+ + + L+ E IFK++ + + F +E+GL
Sbjct: 1680 KGKRIRENYSA----MIFETIVDGKLKTEKIFKEINEHST--SYTF-----RSEKGLLSA 1728
Query: 924 LGVGSQLPQIALLT 937
+Q Q AL
Sbjct: 1729 ----TQFTQPALTL 1738
Score = 30.0 bits (67), Expect = 8.1
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 710 QDSASRNFHNHM----YNPFD---DVFSEGFNFPFEEHDISLFH------KLSTTHWNFE 756
Q S + M Y DV++ N + + S+ T H+ E
Sbjct: 1624 QGSQEQG----MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 757 K-NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 797
K I ++Y+ + + L+ E IFK++ + +
Sbjct: 1680 KGKRIRENYSA----MIFETIVDGKLKTEKIFKEINEHSTSY 1717
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 73.6 bits (181), Expect = 2e-13
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAE 693
D Y+ LGV R A QEI K Y++L ++WHPD + A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 694 RRKQYD 699
RK++D
Sbjct: 443 MRKKFD 448
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 64.2 bits (156), Expect = 9e-12
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 636 SLDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN 687
+++ +E G+P L + ++ L +HPD + +++ Q+ +AY
Sbjct: 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQ 62
Query: 688 ILSDAERRKQYDL 700
L D RR +Y L
Sbjct: 63 TLKDPLRRAEYLL 75
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 64.2 bits (156), Expect = 1e-11
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 637 LDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYNI 688
+D + G+P L Q + ++ L ++HPDK + E+ + +A+
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 689 LSDAERRKQYDL 700
L R +Y L
Sbjct: 61 LRHPLMRAEYLL 72
>2f3i_A DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide;
RNA polymerase II, transferase; NMR {Homo sapiens}
Length = 150
Score = 63.0 bits (153), Expect = 2e-11
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 10/83 (12%)
Query: 534 LLEKGFSLADVDRKLFTAFAEQIFQTGFVHADPHSGN-----DVNTWLYPVDLGDKFRLV 588
L E F + D+D + ++ + +H + S DVN +YPVDLGDKFRLV
Sbjct: 5 LFEDIFDVKDIDPE-----GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLV 59
Query: 589 LATTLREDGYPDSGEWNPLEESP 611
+A+TL EDG D GE+NP ++ P
Sbjct: 60 IASTLYEDGTLDDGEYNPTDDRP 82
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 61.0 bits (147), Expect = 1e-10
Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERR 695
++ +G+ + ++++K Y++ V+ HPDK A+ F++L +A++ + ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 696 KQY 698
Y
Sbjct: 180 PLY 182
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 62.2 bits (150), Expect = 8e-10
Identities = 41/363 (11%), Positives = 91/363 (25%), Gaps = 28/363 (7%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
L F++ WC C + P + K + L + + Q L + P + +
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI-PGFPSLKIF 93
Query: 937 TDGRTSFFKEPSF--SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQ 994
+ + + + + +V+F + + V A E ++
Sbjct: 94 KNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLAN-----ETFVTPVIVQS 148
Query: 995 RSLPVRLR--YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 1052
+ + A KH F +D + K D
Sbjct: 149 GKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIA-- 206
Query: 1053 SASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASR 1112
+ I LF D E + +
Sbjct: 207 ---------DADVFEKWLQVEALPYFGEIDGSV-FAQYVESGLPLGYLFYNDEEELEEYK 256
Query: 1113 HTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKY 1172
A+++R + F+ + K L E ++H D K
Sbjct: 257 PLFTELAKKNR---GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD---MTEDLKYGLP 310
Query: 1173 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNR 1232
+ +++ ++ + + ++ + E D + L + +
Sbjct: 311 QLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370
Query: 1233 IFM 1235
I
Sbjct: 371 IVN 373
Score = 37.5 bits (86), Expect = 0.040
Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 43/217 (19%)
Query: 720 HMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFA 779
+ D ++ F + + F ++ + + L + +
Sbjct: 198 YNGKKADIADADVFEKWLQVEALPYFGEID------GSVFAQYVESGLPLGYLFYNDEEE 251
Query: 780 CLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRNF------HNHMYNPF 833
+ +P+F +L + L + F ++ FG G F + Y
Sbjct: 252 LEEYKPLFTELAKKNRGL-MNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLP 310
Query: 834 ----DDVFSEGFNFPFEEHDISLFHK------------------------LSTTHWNFEK 865
+ E I K N ++
Sbjct: 311 QLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370
Query: 866 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 902
L+L+Y+ WC C ++ P +++L D
Sbjct: 371 IVNDPKKDV--LVLYYAPWCGHCKRLAPTYQELADTY 405
Score = 36.0 bits (82), Expect = 0.12
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 651 LQEIRKNYKRLVVEWHPDKNNDPTAQEKF-LQLTEAYNILSDAERRKQYDLFGTTDGFSG 709
E+ K + L+ D ++ + D +Y L ++
Sbjct: 259 FTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFD 318
Query: 710 QDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLST----THWNFEKNYIPKSYT 765
+ S + F +G P + ++ S+ N ++
Sbjct: 319 ELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKD 378
Query: 766 TPHLILFYSDWCFACLQVEPIFKKLMDEL 794
L+L+Y+ WC C ++ P +++L D
Sbjct: 379 V--LVLYYAPWCGHCKRLAPTYQELADTY 405
Score = 34.8 bits (79), Expect = 0.23
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
L F++ WC C + P + K + L + +
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQI 70
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 55.1 bits (133), Expect = 1e-09
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 640 YETLGV-PRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 696
+ L + T + +++++ ++++++ HPDK P K + EA + L K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK---INEAKDFLEKRGISK 71
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 58.6 bits (141), Expect = 2e-09
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 636 SLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN 687
+ D + + R+ +++ Y++L HPD + + EK + +AY
Sbjct: 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101
Query: 688 ILSDAERRKQYDL 700
L R Y L
Sbjct: 102 TLLAPLSRGLYLL 114
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 59.5 bits (143), Expect = 6e-09
Identities = 35/265 (13%), Positives = 75/265 (28%), Gaps = 18/265 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
NFE L+ F++ WC ++ P ++ L V V
Sbjct: 10 NFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTANTNTC 68
Query: 922 RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDN 981
+ GV S P + + DG + + + +V + + + + F+
Sbjct: 69 NKYGV-SGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFI-- 125
Query: 982 WREDNKVHALLFQRSL--PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK 1039
D + F +L A R F + S+ + G+
Sbjct: 126 --SDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT-----NVESLVNEYDDNGEG 178
Query: 1040 DSLL---IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKL 1096
L + + + T + ++ N + P ++ + K L
Sbjct: 179 IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG--KDL 236
Query: 1097 CVVLFSEDSPEHDASRHTLRRFAQE 1121
+ + D ++ + R
Sbjct: 237 LIAYYDVDYEKNAKGSNYWRNRVMM 261
Score = 39.8 bits (92), Expect = 0.006
Identities = 31/220 (14%), Positives = 56/220 (25%), Gaps = 33/220 (15%)
Query: 716 NFHNHMYNPFDDVFSEGFNFPFEEHDISLF---HKLSTTHWNFEKNYIPKSYTTPHLILF 772
+H+ N F+D I F + E N LI +
Sbjct: 182 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNK-DLIQGKDLLIAY 240
Query: 773 YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDS------------ 820
Y + ++ + ++ + + FS + S
Sbjct: 241 YDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIP 300
Query: 821 --ASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPH-- 876
A R + ++ +G D +
Sbjct: 301 VVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAE 360
Query: 877 -------------LILFYSDWCFACLQVEPIFKKLMDELS 903
LI FY+ WC C +EP +K+L ++LS
Sbjct: 361 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLS 400
Score = 36.0 bits (82), Expect = 0.098
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
NFE L+ F++ WC ++ P ++ L
Sbjct: 10 NFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK 51
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast,
nucleotidyltransferase; NMR {Saccharomyces cerevisiae}
SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H
1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H*
1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H
1y1y_H ...
Length = 146
Score = 55.3 bits (133), Expect = 7e-09
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 534 LLEKGFSLADVDRKLFTAFAEQIFQTGFVHADPHSGNDVNTWLYPVDLGDKFRLVLATTL 593
L + F +++VD + +I D+N L+PV D + +A++L
Sbjct: 5 LFDDIFQVSEVDPGRYNKVC-RIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSL 63
Query: 594 REDGYPDSGEWNPLEESP 611
+ P + P
Sbjct: 64 NLEDTPANDSSATRSWRP 81
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein,
calcium-binding, muscle protein, metal binding protein;
2.40A {Canis lupus familiaris} PDB: 2vaf_A
Length = 350
Score = 58.5 bits (141), Expect = 8e-09
Identities = 50/318 (15%), Positives = 103/318 (32%), Gaps = 21/318 (6%)
Query: 864 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIF-------KKLMDELSPLGVGFFTVHVHN 916
EKN+ L L+Y + + + F + + L +GF V
Sbjct: 18 EKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77
Query: 917 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVD 976
E LA++LG + + +L RT F F+ +VEF + + + S V
Sbjct: 78 EAKLAKKLGFDEE-GSLYVLKGDRTIEFDGE-FAADVLVEFLLDLIEDPVEIINSKLEVQ 135
Query: 977 AFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP 1036
AF + K+ + A + I F V ++ +
Sbjct: 136 AFERI-EDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK 189
Query: 1037 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKK 1095
++ + F E +I L + + TL R+ + M + +
Sbjct: 190 MNE---VDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNG 246
Query: 1096 LCVVLF-SEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE 1154
+ +V F P+ L++ A+++ + +++ +++ + P V
Sbjct: 247 IHIVAFAERSDPDGYEFLEILKQVARDNTD-NPDLSIVWIDPDDFPLLVAYWEKTFKIDL 305
Query: 1155 ISLHIAAMWRMDYKKIKY 1172
I + D +
Sbjct: 306 FKPQIGVVNVTDADSVWM 323
Score = 30.4 bits (68), Expect = 4.5
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 756 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
EKN+ L L+Y + + + F+ L
Sbjct: 18 EKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVL 56
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 56.0 bits (135), Expect = 2e-08
Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 29/207 (14%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRN---- 824
L+ FY+ WC C Q P ++K+ + L D S ASR
Sbjct: 36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPI------PVAKIDATSASVLASRFDVSG 89
Query: 825 ------FHNHMYNPF------DDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSY 872
+ +++ ++ + L T NF++
Sbjct: 90 YPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADI 149
Query: 873 TTPHLILFYSDWCFACLQVEPIFKKLMDELS--PLGVGFFTVHVHNEQGLARRLGVGSQL 930
L+ FY+ WC C ++ P ++K ELS + V E LA+R V S
Sbjct: 150 I---LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDV-SGY 205
Query: 931 PQIALLTDGRTSFFKEPSFSVQKMVEF 957
P + + GR + P +V++
Sbjct: 206 PTLKIFRKGRPYDYNGP-REKYGIVDY 231
Score = 49.8 bits (119), Expect = 2e-06
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 934
L+ FY+ WC C Q P ++K+ + L + + + LA R V P I
Sbjct: 36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-YPTIK 94
Query: 935 LLTDGRTSFFKEPSFSVQKMVEFFR------LKLPYKLIVPLSATNVDAFLDNWREDNKV 988
+L G+ ++ + +++V R P ++ + L+ N D + D +
Sbjct: 95 ILKKGQAVDYEGS-RTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVV----NDADI 149
Query: 989 HALLF--------QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 1040
+ F ++ P + K I + D + + +RF V G
Sbjct: 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKV--DATAETDLAKRFDVSGY-P 206
Query: 1041 SLLIFKEDK 1049
+L IF++ +
Sbjct: 207 TLKIFRKGR 215
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 55.0 bits (132), Expect = 2e-08
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 630 FINCAVSLDPYETLGVPR-------TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQL 682
+ + YE T +RK Y++L + HPD E+ L
Sbjct: 4 LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTL 61
Query: 683 TEAYNILSDAERRKQYDLFG 702
+AY+ L D RR QY L
Sbjct: 62 NQAYHTLKDPLRRSQYMLKL 81
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 55.4 bits (133), Expect = 8e-08
Identities = 47/305 (15%), Positives = 104/305 (34%), Gaps = 22/305 (7%)
Query: 877 LILFYSDWCFACLQV------EPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL 930
+L++ E I + L GVGF V + +A++LG+ ++
Sbjct: 34 ALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL-TEE 92
Query: 931 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 990
I + + + FS +VEF L + + + AF + ED
Sbjct: 93 DSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDPVELIEGERELQAFENI--EDEIKLI 149
Query: 991 LLFQRSLPVRLRYLIN-AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK 1049
F+ + A + I F S V ++ + + + ++
Sbjct: 150 GYFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTL--KLNEIDFYEAFM 202
Query: 1050 DRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKKLCVVLF-SEDSPE 1107
+ P +I + + + + TL ++ +SM + + + +V F E P+
Sbjct: 203 EEP-VTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPD 261
Query: 1108 HDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDY 1167
L+ AQ++ + +++ +++ + P V D + I + D
Sbjct: 262 GYEFLEILKSVAQDNT-DNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDA 320
Query: 1168 KKIKY 1172
+
Sbjct: 321 DSVWM 325
Score = 30.0 bits (67), Expect = 6.5
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 19/176 (10%)
Query: 802 FTVHYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLF---HKLST 858
F + F T D + + Y F + + P E +I F H+ ST
Sbjct: 170 FHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRST 229
Query: 859 -THWNFE--KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 915
E H++ F + + I K + + + + +
Sbjct: 230 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDN-PDLSIIWID 288
Query: 916 NEQ------GLARRLGVGSQLPQIALL--TDGRTSFFK----EPSFSVQKMVEFFR 959
+ + + PQI ++ TD + + + E S +++ ++
Sbjct: 289 PDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLE 344
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 54.6 bits (131), Expect = 1e-07
Identities = 36/283 (12%), Positives = 87/283 (30%), Gaps = 24/283 (8%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDEL-----SPLGVGFFTVHVHNEQGLARRLGVGSQLP 931
L+ FY+DWC + PIF++ D + + V F V +A+R + S+ P
Sbjct: 26 LVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI-SKYP 84
Query: 932 QIALLTDGRTSFFK-EPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 990
+ L +G + SV+ + ++ R + + + +
Sbjct: 85 TLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLD----RSKRNII 140
Query: 991 LLFQRSL-PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK 1049
F++ + A F D V + + G D+++
Sbjct: 141 GYFEQKDSDNYRVFERVANILHDDCAFLSAFGD------VSKPERYSG--DNIIYKPPGH 192
Query: 1050 DRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEH- 1108
P + + + I+ ++ + ++ ++ E
Sbjct: 193 SAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESL 252
Query: 1109 DASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPED 1151
+ ++ + R + I F++ +K + +
Sbjct: 253 EIFQNEVARQLISEK---GTINFLHADCDKFRHPLLHIQKTPA 292
Score = 33.0 bits (75), Expect = 0.82
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 769 LILFYSDWCFACLQVEPIFKKLMDELS 795
L+ FY+DWC + PIF++ D +
Sbjct: 26 LVNFYADWCRFSQMLHPIFEEASDVIK 52
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 53.3 bits (128), Expect = 2e-07
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQ 918
N ++ + +S TTP L F+S+ CLQ+ PI + L + + G F + EQ
Sbjct: 16 NLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAEQ 70
Query: 919 GLARRLGVGSQLPQIALLTDGR 940
+A + G+ + +P + L +G+
Sbjct: 71 MIAAQFGLRA-IPTVYLFQNGQ 91
Score = 42.1 bits (99), Expect = 0.001
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
N ++ + +S TTP L F+S+ CLQ+ PI + L +
Sbjct: 16 NLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQ 54
>3h0g_H DNA-directed RNA polymerases I, II, and III subunit rpabc3;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 125
Score = 49.0 bits (117), Expect = 6e-07
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 534 LLEKGFSLADVDRKLFTAFAEQIFQTGFVHADPHSGN-----DVNTWLYPVDLGDKFRLV 588
LL++ F++ VD++ + + + A + D+N+ +YP++ F L
Sbjct: 6 LLDEIFTVTSVDKQKY-------QRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 589 LATTLREDGYPDSGEW 604
+ + L ++ ++
Sbjct: 59 ITSNLNSPDLKEAADY 74
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 47.1 bits (112), Expect = 4e-06
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
++ + + ++ F+++W C PI+ L + + G+ F V V ++
Sbjct: 16 TIDEE-LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVS 74
Query: 922 RRLGVGS-----QLPQIALLTDGR 940
R V + QLP + L G+
Sbjct: 75 TRYKVSTSPLTKQLPTLILFQGGK 98
Score = 37.5 bits (87), Expect = 0.007
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF 801
++ + + ++ F+++W C PI+ L + + G+ F
Sbjct: 16 TIDEE-LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNF 62
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 45.8 bits (108), Expect = 4e-06
Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSD 691
++ +G+ + ++++K Y++ V+ HP K A+ F++L +A++ +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 46.3 bits (110), Expect = 9e-06
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 849 DISLFHKLSTTHW-----NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 903
+L+ +L T W + ++I + L+ + +L+ E
Sbjct: 7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP 66
Query: 904 PLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 940
+ + + R V P + TDG+
Sbjct: 67 QFDWQVAVADLEQSEAIGDRFNVRR-FPATLVFTDGK 102
Score = 30.9 bits (70), Expect = 1.4
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 741 DISLFHKLSTTHW-----NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
+L+ +L T W + ++I + L+ + +L+ E
Sbjct: 7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF 65
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 48.1 bits (114), Expect = 2e-05
Identities = 37/268 (13%), Positives = 65/268 (24%), Gaps = 49/268 (18%)
Query: 669 KNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 728
K+ + + ++FLQ AE T++ ++ FD+
Sbjct: 44 KDVESDSAKQFLQA---------AEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEG 94
Query: 729 FSEGFNFPFEEHDISLFHKLSTTHW-------NFEKNYIPKSYTTPHLILFYSDWCFACL 781
+ F + ++ F K + K + H++LF
Sbjct: 95 RNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIF--GGEIKTHILLFLPKSVSDYD 151
Query: 782 QVEPIFKKLMDELSPLGVGFFTVHYDLFG-------------TTDGFSGQDSASRNFHNH 828
FK + + F + D
Sbjct: 152 GKLSNFKTAAESFKGKIL-FIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK 210
Query: 829 MYNPFDDV---------FSEGFNFPFEEHDISLFHKLST-----THWNFEKNYIPKSYTT 874
+ F EG P NFE +
Sbjct: 211 PESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNV 270
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDEL 902
+ FY+ WC C Q+ PI+ KL +
Sbjct: 271 --FVEFYAPWCGHCKQLAPIWDKLGETY 296
Score = 37.0 bits (85), Expect = 0.049
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 15/143 (10%)
Query: 829 MYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHW-------NFEKNYIPKSYTTPHLILFY 881
++ FD+ + F + ++ F K + K + H++LF
Sbjct: 87 LFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIF--GGEIKTHILLFL 143
Query: 882 SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGV-GSQLPQIALLTDG 939
FK + + F H + Q + G+ + P + L+T
Sbjct: 144 PKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLE 203
Query: 940 RTSFFKEPS---FSVQKMVEFFR 959
+P + +++ EF
Sbjct: 204 EEMTKYKPESEELTAERITEFCH 226
Score = 36.6 bits (84), Expect = 0.058
Identities = 45/294 (15%), Positives = 87/294 (29%), Gaps = 25/294 (8%)
Query: 512 KSSTRVLTTEFIDGVKISDKEGLLEKGFSLADVDRKLFTAFAEQIFQTGFVH------AD 565
+ +T + + + S + ++ + K F AE I F
Sbjct: 17 EFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFS 76
Query: 566 PHSGNDVNTWLYPVDLGDKFRLVLATTLREDGYPD--SGEWNPL-EESPRMNFNLIMLWY 622
+ + L+ D+ R + ++ D PL E I
Sbjct: 77 KYQLDKDGVVLFKK--FDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGE 134
Query: 623 TFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQL 682
+LF+ S+ Y+ + + E K + +N + L+
Sbjct: 135 IKTHILLFL--PKSVSDYDGK-LSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKK 191
Query: 683 --TEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEH 740
A +++ E +Y ++ + + F + P E+
Sbjct: 192 EECPAVRLITLEEEMTKY--KPESEELTAE--RITEFCHRFLEGKIKPHLMSQELP-EDW 246
Query: 741 DISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
D L NFE + + FY+ WC C Q+ PI+ KL +
Sbjct: 247 DKQPVKVLVGK--NFEDVAFDEKKNV--FVEFYAPWCGHCKQLAPIWDKLGETY 296
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 44.2 bits (104), Expect = 2e-05
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 640 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--------TAQEKFLQLTEAYNILS 690
++ + + +RK+Y+R ++ HPDK A++ F L EA++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 46.5 bits (110), Expect = 3e-05
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 29/210 (13%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL----SPLGVGFF--TVHVH 915
+ S + + F++ WC C+ P + L +++ L + +
Sbjct: 21 TVRG-AVLGS-RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN 78
Query: 916 NEQGLARRLGVGSQLPQI----ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP-------- 963
+ + R + P + A +G + F VQ + E L
Sbjct: 79 SA--VCRDFNI-PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135
Query: 964 -YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYD 1022
+ P +D F + + AL+F+ R + + ++
Sbjct: 136 ACPPLEPAXLEEIDGFFARN--NEEYLALIFEXGGSYLAREVALDLSQHKGVAVRRVL-- 191
Query: 1023 QEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 1052
++V ++F V L+F+
Sbjct: 192 -NTEANVVRKFGVTDFPSCYLLFRNGSVSR 220
Score = 42.7 bits (100), Expect = 5e-04
Identities = 29/231 (12%), Positives = 59/231 (25%), Gaps = 40/231 (17%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL---------------- 797
+ S + + F++ WC C+ P + L +++
Sbjct: 21 TVRG-AVLGS-RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN 78
Query: 798 -------GV-GFFTVHYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHD 849
+ GF TV + T +G + + D +
Sbjct: 79 SAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALE-----SHHDTW 133
Query: 850 ISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF 909
L + ++ ++F + +V + V
Sbjct: 134 PPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKG------VAV 187
Query: 910 FTVHVHNEQGLARRLGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFR 959
V E + R+ GV + P LL +G S S + +
Sbjct: 188 RRVLN-TEANVVRKFGV-TDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQ 236
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 43.1 bits (102), Expect = 5e-05
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 857 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 916
+ E + ++ F+ + C C +E + K V +V
Sbjct: 3 AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA 60
Query: 917 EQGLARRLGVGSQLPQIALLTDG 939
L + LG +P + + DG
Sbjct: 61 RPELMKELGFER-VPTLVFIRDG 82
Score = 31.2 bits (71), Expect = 0.70
Identities = 6/52 (11%), Positives = 16/52 (30%)
Query: 749 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVG 800
+ E + ++ F+ + C C +E + K + +
Sbjct: 3 AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAIS 54
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 43.5 bits (103), Expect = 5e-05
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
+I FY+ WC AC ++P ++ + L V V V + GL+ R + + LP I
Sbjct: 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPTIY 82
Query: 935 LLTDG 939
DG
Sbjct: 83 HCKDG 87
Score = 33.4 bits (77), Expect = 0.18
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGV 799
+I FY+ WC AC ++P ++ + L V
Sbjct: 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEV 56
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 42.7 bits (101), Expect = 6e-05
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
L+ ++ C C + +++ + V + + + Q +A R V + P +
Sbjct: 20 LVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFT-GPTVL 76
Query: 935 LLTDGR 940
L +G+
Sbjct: 77 LFYNGK 82
Score = 33.8 bits (78), Expect = 0.094
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDE 793
L+ ++ C C + +++
Sbjct: 20 LVLLFIKTENCGVCDVMLRKVNYVLEN 46
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 42.4 bits (100), Expect = 1e-04
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 855 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVH 913
+++ N +N P +I+F +D C C++++ + E + + +
Sbjct: 8 QINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLE 67
Query: 914 VHNEQGLARRLGVGSQLPQIALL 936
LA + +P L
Sbjct: 68 EEKNIDLAYKYDANI-VPTTVFL 89
Score = 33.2 bits (76), Expect = 0.22
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 747 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
+++ N +N P +I+F +D C C++++ + E
Sbjct: 8 QINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKER 55
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ + + ++ F + WC C ++P F L ++ S V F V V + Q +A
Sbjct: 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 66
Query: 922 RRLGVGS 928
V S
Sbjct: 67 SESEVKS 73
Score = 32.3 bits (74), Expect = 0.27
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ + + ++ F + WC C ++P F L ++ S V F V D
Sbjct: 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD 60
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 41.6 bits (98), Expect = 2e-04
Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 857 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 916
+ + ++ F++ W C ++ +F+ + +E S V F ++
Sbjct: 7 DQEQFTYLTTTAAGD--KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64
Query: 917 EQGLARRLGVGS 928
++ + +
Sbjct: 65 NSEISELFEISA 76
Score = 34.3 bits (79), Expect = 0.068
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 749 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
+ + ++ F++ W C ++ +F+ + +E S V F ++
Sbjct: 7 DQEQFTYLTTTAAGD--KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 41.5 bits (98), Expect = 2e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ + + ++ F + WC ++P F L ++ S V F V V + Q +A
Sbjct: 20 TAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 77
Query: 922 RRLGVGS 928
V S
Sbjct: 78 SECEVKS 84
Score = 32.3 bits (74), Expect = 0.36
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ + + ++ F + WC ++P F L ++ S V F V D
Sbjct: 20 TAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVD 71
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 39.6 bits (93), Expect = 7e-04
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 865 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 924
+ + + + ++ F C CL++ P F + ++ F V VH QG A
Sbjct: 13 QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATN 70
Query: 925 GVGS 928
+ +
Sbjct: 71 NISA 74
Score = 31.1 bits (71), Expect = 0.78
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 757 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ + + + ++ F C CL++ P F + ++ F V
Sbjct: 13 QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH 61
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ EK I ++ ++ F++ WC C + P + L E+ V F V V + A
Sbjct: 9 DLEK-LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAA 65
Query: 922 RRLGVGS 928
+ V +
Sbjct: 66 AKYSVTA 72
Score = 31.8 bits (73), Expect = 0.36
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ EK I ++ ++ F++ WC C + P + L E+ V F V D
Sbjct: 9 DLEK-LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD 59
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGL 920
F + + P ++ ++ WC + P ++KL +E V F + + E + L
Sbjct: 14 TFW-PIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTL 70
Query: 921 ARRLGVGSQLPQIALLTDG 939
A+ LG+ +P +L +
Sbjct: 71 AKELGIRV-VPTFKILKEN 88
Score = 32.3 bits (74), Expect = 0.31
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
F + + P ++ ++ WC + P ++KL +E V F + +
Sbjct: 14 TFW-PIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCN 64
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 862 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 919
F+ ++ T L++ F + WC C + P+F + + G F V V +
Sbjct: 16 EFDT-HMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKD 72
Query: 920 LARRLGVGSQLPQIALLTDGR 940
+A V + +P + DG
Sbjct: 73 VAEAYNVEA-MPTFLFIKDGE 92
Score = 31.9 bits (73), Expect = 0.47
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 754 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
F+ ++ T L++ F + WC C + P+F + + G F V D
Sbjct: 16 EFDT-HMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD 68
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 39.8 bits (93), Expect = 0.001
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS 928
F + WC Q+ P + +L + + F + V + + +
Sbjct: 53 FSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKA 99
Score = 31.7 bits (72), Expect = 0.88
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 772 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
F + WC Q+ P + +L + + F + D
Sbjct: 53 FSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVD 86
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 38.4 bits (90), Expect = 0.001
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 876 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 935
++ +F S C C + + E + + + ++ A G+ + +P IA+
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMA-VPAIAI 61
Query: 936 LTDGRTSF 943
+G F
Sbjct: 62 --NGVVRF 67
Score = 29.6 bits (67), Expect = 1.7
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 768 HLILFYSDWCFACLQVEPIFKKLMDELSP 796
++ +F S C C + + E
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD 32
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGL 920
F + + P ++ ++ WC C + P ++KL +E V F + + E + L
Sbjct: 27 TFWP-IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTL 83
Query: 921 ARRLGVGSQLPQIALLTDG 939
A+ LG+ +P +L +
Sbjct: 84 AKELGIRV-VPTFKILKEN 101
Score = 32.0 bits (73), Expect = 0.47
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
F + + P ++ ++ WC C + P ++KL +E V F + +
Sbjct: 27 TFWP-IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCN 77
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active center;
2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 40.9 bits (95), Expect = 0.002
Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 41/230 (17%)
Query: 859 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL-SPLGVGFFTVHVHNE 917
T +F+K +YT+ L+ FY+ WC C ++ F+K L + V ++
Sbjct: 23 TPKSFDKAIHNTNYTS--LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 918 QGLARRLGVGSQLPQIALLTDGRTSFFKEPSF-----------------SVQKMVEFFRL 960
+ L + V P + + + K ++ +V+F
Sbjct: 81 KALCAKYDVNG-FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLS 139
Query: 961 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIV 1020
++ + + + + L + K+ +LF + + Y A F I
Sbjct: 140 RIRSYVKKFVRIDTLGSLLR---KSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSIS 196
Query: 1021 YDQ-----------EDSSSVFQRF------KVPGDKDSLLIFKEDKDRPS 1053
+ E + +F+ + DK L++F DKD+
Sbjct: 197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW 246
Score = 30.9 bits (69), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 751 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 796
T +F+K +YT+ L+ FY+ WC C ++ F+K L
Sbjct: 23 TPKSFDKAIHNTNYTS--LVEFYAPWCGHCKKLSSTFRKAAKRLDG 66
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 857 STTHWNFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 914
S W I ++ T L++ F + WC C + P+F L + F V V
Sbjct: 19 SLEQWT---MQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDV 73
Query: 915 HNEQGLARRLGVGSQLPQIALLTDGR 940
+ +A + V + +P + +G
Sbjct: 74 DELKPIAEQFSVEA-MPTFLFMKEGD 98
Score = 31.2 bits (71), Expect = 0.85
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 749 STTHWNFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
S W I ++ T L++ F + WC C + P+F L + F V
Sbjct: 19 SLEQWT---MQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKV 71
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 38.1 bits (89), Expect = 0.003
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ K +I F++ WC C + P+F+K+ D + VGF+ V V + +A
Sbjct: 24 DQFKQVTGGD--KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIA 81
Query: 922 RRLGVGSQLPQIALLTDG 939
+ +G+ + +P +G
Sbjct: 82 QEVGIRA-MPTFVFFKNG 98
Score = 31.6 bits (72), Expect = 0.68
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ K +I F++ WC C + P+F+K+ D + VGF+ V D
Sbjct: 24 DQFKQVTGGD--KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
++ + + ++ F++ WC C + P+FK+L ++ F V V + A
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVKVDVDKLEETA 78
Query: 922 RRLGVGS 928
R+ + +
Sbjct: 79 RKYNISA 85
Score = 30.8 bits (70), Expect = 1.0
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
++ + + ++ F++ WC C + P+FK+L ++ F V D
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVKVDVD 72
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 38.1 bits (89), Expect = 0.004
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 846 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 905
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 906 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 940
V F V V + +A V + +P L DG+
Sbjct: 57 NVTFLKVDVDELKAVAEEWNVEA-MPTFIFLKDGK 90
Score = 30.8 bits (70), Expect = 1.1
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 738 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 797
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 798 GVGFFTV 804
V F V
Sbjct: 57 NVTFLKV 63
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 37.7 bits (88), Expect = 0.005
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+N I ++ +I FY+ WC C ++P KL+ V F V +A
Sbjct: 21 TEFRNLIKQN--DKLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVDESPDIA 76
Query: 922 RRLGVGSQLPQIALLTDG 939
+ V + +P L DG
Sbjct: 77 KECEVTA-MPTFVLGKDG 93
Score = 29.2 bits (66), Expect = 3.5
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+N I ++ +I FY+ WC C ++P KL+ V F D
Sbjct: 21 TEFRNLIKQN--DKLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVD 70
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 37.8 bits (88), Expect = 0.005
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 862 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 919
F+ + K+ +++ F + WC C + P+F + + G F V V +
Sbjct: 24 EFDAQ-MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKE 80
Query: 920 LARRLGVGSQLPQIALLTDG 939
+A + V + +P + DG
Sbjct: 81 VAEKYNVEA-MPTFLFIKDG 99
Score = 30.9 bits (70), Expect = 1.4
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 754 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
F+ + K+ +++ F + WC C + P+F + + G F V
Sbjct: 24 EFDAQ-MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKV 73
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 37.2 bits (87), Expect = 0.005
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 917
+ + + K+ ++ F++ WC C + P +L + V V V
Sbjct: 6 KDKADLDG-QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF-ADNVVVLKVDVDEC 63
Query: 918 QGLARRLGVGS 928
+ +A + S
Sbjct: 64 EDIAMEYNISS 74
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 750 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ + + K+ ++ F++ WC C + P +L + V V D
Sbjct: 6 KDKADLDG-QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF-ADNVVVLKVDVD 61
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus}
PDB: 3t59_A*
Length = 519
Score = 40.3 bits (93), Expect = 0.006
Identities = 36/320 (11%), Positives = 87/320 (27%), Gaps = 46/320 (14%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL----SPLGVGFF--TVHVH 915
+ + S ++ + F++ WC + P +K+L +++ L + +
Sbjct: 21 SVRP-TVLGS-SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN 78
Query: 916 NEQGLARRLGV----------GSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP-- 963
+ + R + G + + + +E R P
Sbjct: 79 SA--VCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPA 136
Query: 964 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQ 1023
+ P ++D F AL+F+R R + + ++ +
Sbjct: 137 CPPLEPAKLNDIDGFFTR--NKADYLALVFEREDSYLGREVTLDLSQYHAVAVRRVLNTE 194
Query: 1024 EDSSSVFQRFKVPGDKDSLLIFKEDKDRP----------------SASITMNSIPVPTLQ 1067
D + +F V L+ + P T
Sbjct: 195 SD---LVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPTTAT 251
Query: 1068 DITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDAS---RHTLRRFAQESRF 1124
+T + T+ + + +S + L +L E L++F
Sbjct: 252 PVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFVAVLAK 311
Query: 1125 VHNNIAFMYVFIEKQPEFVN 1144
+ F+ +++
Sbjct: 312 YFPGQPLVQNFLHSINDWLQ 331
Score = 34.2 bits (77), Expect = 0.41
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
+ + S ++ + F++ WC + P +K+L +++
Sbjct: 21 SVRP-TVLGS-SSAWAVEFFASWCGHAIAFAPTWKELANDV 59
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 38.0 bits (88), Expect = 0.006
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 917
T+ ++ I + ++ F D CLQ++ I K +LS + + V V
Sbjct: 9 TSKKEVDQ-AIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAA-IYLVDVDQT 66
Query: 918 QGLARRLGVGSQLPQIALLTDGR 940
+ + S +P +G+
Sbjct: 67 AVYTQYFDI-SYIPSTVFFFNGQ 88
Score = 32.6 bits (74), Expect = 0.43
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 750 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
T+ ++ I + ++ F D CLQ++ I K +LS
Sbjct: 9 TSKKEVDQ-AIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS 53
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 37.4 bits (87), Expect = 0.007
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 865 KNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR 922
+ K+ + L++ F + WC C + P F L +L V F V + +A
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVAS 85
Query: 923 RLGVGSQLPQIALLTDGR 940
+ + +P L +G+
Sbjct: 86 DWAIQA-MPTFMFLKEGK 102
Score = 30.0 bits (68), Expect = 2.5
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 757 KNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ K+ + L++ F + WC C + P F L +L V F V D
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD 78
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 37.9 bits (88), Expect = 0.007
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 917
+ FE+ + + ++ F++ W C Q+ + +L EL V F +
Sbjct: 18 GSAGQFEE-LLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGV 74
Query: 918 QGLARRLGVGSQLPQIALLTDG 939
++ + + S +P +
Sbjct: 75 PEVSEKYEISS-VPTFLFFKNS 95
Score = 31.4 bits (71), Expect = 1.3
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 750 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
+ FE+ + + ++ F++ W C Q+ + +L EL V F +
Sbjct: 18 GSAGQFEE-LLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKL 69
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.4 bits (87), Expect = 0.007
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ + +I F + WC C +++ FK ++ V + V L
Sbjct: 29 GSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY---VTLVDIDVDIHPKLN 85
Query: 922 RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMV 955
+ + + LP + V +
Sbjct: 86 DQHNIKA-LPTFEFYFNL-----NNEWVLVHTVE 113
Score = 30.1 bits (68), Expect = 2.3
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ + +I F + WC C +++ FK ++ V + D
Sbjct: 29 GSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY---VTLVDIDVD 79
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 37.1 bits (86), Expect = 0.009
Identities = 11/80 (13%), Positives = 18/80 (22%), Gaps = 6/80 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ +I Y CL V L + F
Sbjct: 19 QYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKA---IVNSCI 73
Query: 922 RRLGVGSQLPQIALLTDGRT 941
+ LP I + +G+
Sbjct: 74 EHYHD-NCLPTIFVYKNGQI 92
Score = 33.3 bits (76), Expect = 0.23
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKL 790
+ +I Y CL V L
Sbjct: 19 QYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVL 55
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 36.2 bits (84), Expect = 0.014
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 862 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 919
++ + K I+ F + WC C + P+F+ L ++ V F V V
Sbjct: 12 AWDAQ-LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY-AGKVIFLKVDVDAVAA 69
Query: 920 LARRLGVGSQLPQIALLTDG 939
+A G+ + +P + DG
Sbjct: 70 VAEAAGITA-MPTFHVYKDG 88
Score = 29.2 bits (66), Expect = 3.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 754 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
++ + K I+ F + WC C + P+F+ L ++ V F V
Sbjct: 12 AWDAQ-LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY-AGKVIFLKV 62
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 35.7 bits (83), Expect = 0.017
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
FY+ WC C + P+ +K ++ F+ + V +A++ V + +P + L +G
Sbjct: 31 FYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDELGDVAQKNEVSA-MPTLLLFKNG 87
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 36.2 bits (84), Expect = 0.019
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F + WC C +E +K+ E V F V N + + V LP + G
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQ-LPTFIIARSG 100
Query: 940 R 940
+
Sbjct: 101 K 101
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 36.2 bits (84), Expect = 0.019
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 844 PFEEHDISLFHKLSTTHW---NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 900
F+++ + +F K+ N K+ T ++ F++ WC AC KL
Sbjct: 12 RFDKYYLRMFKKVPRLQQNGSNIINGVNMKN--TVIVLYFFAKWCQACTMQSTEMDKLQK 69
Query: 901 ELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
+ V + + LAR+ V S LP I LL +
Sbjct: 70 YYGK-RIYLLKVDLDKNESLARKFSVKS-LPTIILLKNK 106
Score = 31.6 bits (72), Expect = 0.79
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 736 PFEEHDISLFHKLSTTHW---NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 792
F+++ + +F K+ N K+ T ++ F++ WC AC KL
Sbjct: 12 RFDKYYLRMFKKVPRLQQNGSNIINGVNMKN--TVIVLYFFAKWCQACTMQSTEMDKLQK 69
Query: 793 ELS 795
Sbjct: 70 YYG 72
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 38.1 bits (87), Expect = 0.021
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH------ 915
+F + + P ++LFY+D C AC + F K L
Sbjct: 32 DFSR-VHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90
Query: 916 -NEQGLARRLGVGS 928
+E L R+ +
Sbjct: 91 ASEVDLCRKYDINF 104
Score = 35.8 bits (81), Expect = 0.11
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
+F + + P ++LFY+D C AC + F K L
Sbjct: 32 DFSR-VHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGL 71
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 35.9 bits (83), Expect = 0.023
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+ +I Y CL V L + F V
Sbjct: 12 QYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIV---NSCI 66
Query: 922 RRLGVGSQLPQIALLTDG 939
+ LP I + +G
Sbjct: 67 QHYHDNC-LPTIFVYKNG 83
Score = 33.6 bits (77), Expect = 0.13
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 2/54 (3%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+ +I Y CL V L + F +
Sbjct: 12 QYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVN 63
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 36.0 bits (83), Expect = 0.027
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-----LARRLGVGSQ 929
P L++F ++WC C ++ + + + F V + L++ G Q
Sbjct: 31 PTLLVFGANWCTDCRALDKSLRNQ-KNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQ 89
Query: 930 --LPQIALLT-DGR-------TSFFKEPSFSVQKMVEFFR 959
+P + ++ DG+ S Q + +FF
Sbjct: 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFA 129
Score = 29.9 bits (67), Expect = 2.9
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 767 PHLILFYSDWCFACLQVEPIFKK 789
P L++F ++WC C ++ +
Sbjct: 31 PTLLVFGANWCTDCRALDKSLRN 53
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 35.4 bits (82), Expect = 0.029
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
FE+ I L++F C C +V P+ ++L GF+ V V E+ L
Sbjct: 13 TFEQL-IYDE-GKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLF 69
Query: 922 RRLGVGSQLPQIALLTDG 939
+R + +PQI DG
Sbjct: 70 QRFSLKG-VPQILYFKDG 86
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 35.8 bits (83), Expect = 0.030
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
NF + I L+ FY+ WC C ++ P +KK L + V V+ Q L
Sbjct: 26 NFNREVIQSDGLW--LVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQSLG 82
Query: 922 RRLGV 926
+ GV
Sbjct: 83 GQYGV 87
Score = 32.7 bits (75), Expect = 0.27
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 796
NF + I L+ FY+ WC C ++ P +KK L
Sbjct: 26 NFNREVIQSDGLW--LVEFYAPWCGHCQRLTPEWKKAATALKD 66
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 35.9 bits (83), Expect = 0.033
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
P L+ F++ WC C Q+ P F+ L+ V + +A R + +P
Sbjct: 65 LPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQG-IPAF 122
Query: 934 ALLTDGR 940
L GR
Sbjct: 123 ILFHKGR 129
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 35.0 bits (81), Expect = 0.034
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 880 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 939
F+++WC C ++ P +++ + + F V V + + + S +P + +G
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITS-MPTFKVYKNG 89
Query: 940 R 940
Sbjct: 90 S 90
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 35.9 bits (83), Expect = 0.034
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+K + + P +I F++ WC C PIF + E + V F V+ E L+
Sbjct: 47 TLDK--LLQD-DLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALS 102
Query: 922 RRLGVGSQLPQIALLTDGR 940
R + S +P I L +G+
Sbjct: 103 TRFRIRS-IPTIMLYRNGK 120
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 35.4 bits (82), Expect = 0.035
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
F+ + LI FY+ WC C Q+EPI+ L +
Sbjct: 16 TFDAIVMDPKKDV--LIEFYAPWCGHCKQLEPIYTSLGKKYK 55
Score = 35.4 bits (82), Expect = 0.035
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 903
F+ + LI FY+ WC C Q+EPI+ L +
Sbjct: 16 TFDAIVMDPKKDV--LIEFYAPWCGHCKQLEPIYTSLGKKYK 55
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 35.5 bits (82), Expect = 0.036
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQ 918
+F+KN + S ++ FY+ WC C +EP + E+ G V Q
Sbjct: 16 SFDKN-VLDS-EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ 73
Query: 919 GLARRLGV 926
LA R G+
Sbjct: 74 VLASRYGI 81
Score = 32.8 bits (75), Expect = 0.35
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVG 800
+F+KN + S ++ FY+ WC C +EP + E+ G
Sbjct: 16 SFDKN-VLDS-EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG 60
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 34.7 bits (80), Expect = 0.044
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 855 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 914
+ TH K L+ F++ WC C ++ I + + V F V V
Sbjct: 7 HFNGTHEALLNRI--KEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIKVDV 62
Query: 915 HNEQGLARRLGVGSQLPQIALLTDG 939
A GV S +P + +
Sbjct: 63 DKNGNAADAYGVSS-IPALFFVKKE 86
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 34.6 bits (80), Expect = 0.052
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 859 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHN 916
NF + Y L+ FY+ WC C + P + K +L G + V
Sbjct: 13 RKSNFAEALAAHKYL---LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE 69
Query: 917 EQGLARRLGV 926
E LA++ GV
Sbjct: 70 ESDLAQQYGV 79
Score = 32.3 bits (74), Expect = 0.40
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 751 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG 798
NF + Y L+ FY+ WC C + P + K +L G
Sbjct: 13 RKSNFAEALAAHKYL---LVEFYAPWCGHCKALAPEYAKAAGKLKAEG 57
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 35.1 bits (81), Expect = 0.057
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
F + + L+ F++ WC C V PI ++L + + + V+V GLA
Sbjct: 42 GFA-QEVAGA--PLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLA 97
Query: 922 RRLGVGSQLPQIALLTDGR 940
R GV S +P + L G
Sbjct: 98 ARYGVRS-VPTLVLFRRGA 115
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 34.2 bits (79), Expect = 0.060
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
NF+ S ++ F+++WC CL + PI ++L ++ +G G ++ +A
Sbjct: 8 NFDS--FLAS-HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFG--KLNSDENPDIA 62
Query: 922 RRLGVGSQLPQIALLTDG 939
R GV S LP + DG
Sbjct: 63 ARYGVMS-LPTVIFFKDG 79
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 34.3 bits (79), Expect = 0.068
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
N+ + + + LI FY+ WC C + P +++L +
Sbjct: 16 NYNEIVLDDTKDV--LIEFYAPWCGHCKALAPKYEELGALYA 55
Score = 34.3 bits (79), Expect = 0.068
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 903
N+ + + + LI FY+ WC C + P +++L +
Sbjct: 16 NYNEIVLDDTKDV--LIEFYAPWCGHCKALAPKYEELGALYA 55
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 33.4 bits (77), Expect = 0.068
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 873 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 932
+ + LF S C C + + +++ +E+ V ++V A G+ + +P
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMA-VPT 59
Query: 933 IALLTDG 939
I + D
Sbjct: 60 IVINGDV 66
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 33.9 bits (78), Expect = 0.15
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQG 919
NF+ K L+ FY+ WC C Q P ++K+ L + + +
Sbjct: 26 NFDNFVADKDTV---LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM 82
Query: 920 LARRLGV 926
LA + V
Sbjct: 83 LASKFDV 89
Score = 30.8 bits (70), Expect = 1.5
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG 798
NF+ K L+ FY+ WC C Q P ++K+ L
Sbjct: 26 NFDNFVADKDTV---LLEFYAPWCGHCKQFAPEYEKIASTLKDND 67
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 33.7 bits (77), Expect = 0.16
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ 932
P ++ FY+DWC C V PI ++L E + G + + V+V E LAR G+ S +P
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQS-IPT 108
Query: 933 IALLTDG 939
I +
Sbjct: 109 IWFVPMK 115
Score = 29.8 bits (67), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 766 TPHLILFYSDWCFACLQVEPIFKKLMDELS 795
P ++ FY+DWC C V PI ++L E +
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA 81
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 33.9 bits (77), Expect = 0.17
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQ 932
P +++ + WC AC ++P F + E+S L F V++ + E G +P+
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPR 106
Query: 933 IALLT 937
I L
Sbjct: 107 ILFLD 111
Score = 29.6 bits (66), Expect = 4.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKL 790
P +++ + WC AC ++P F +
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAES 71
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 33.6 bits (77), Expect = 0.17
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ 932
P ++ FY+DWC C V PI +L E G + + V EQ LA G+ S +P
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQELAGAFGIRS-IPS 95
Query: 933 IALLTDG 939
I +
Sbjct: 96 ILFIPME 102
Score = 29.3 bits (66), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 766 TPHLILFYSDWCFACLQVEPIFKKLMDE 793
P ++ FY+DWC C V PI +L E
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKE 66
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 33.6 bits (77), Expect = 0.19
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 920
+ + S P +++FYS C C +EP F++ E F +++
Sbjct: 15 TWSQQVE-DS-KKPVVVMFYSPACPYCKAMEPYFEEYAKEYG--SSAVFGRINIATNPWT 70
Query: 921 ARRLGVGSQLPQIALLTDGR 940
A + GV P GR
Sbjct: 71 AEKYGVQG-TPTFKFFCHGR 89
Score = 30.9 bits (70), Expect = 1.4
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
+ + S P +++FYS C C +EP F++ E
Sbjct: 15 TWSQQVE-DS-KKPVVVMFYSPACPYCKAMEPYFEEYAKEYG 54
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 32.7 bits (75), Expect = 0.23
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
F + + + T ++ FY+ WC C P F+ L + V V
Sbjct: 12 TFNEK-VLQG-KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQAYPQTC 68
Query: 922 RRLGV 926
++ G+
Sbjct: 69 QKAGI 73
Score = 31.2 bits (71), Expect = 0.99
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
F + + + T ++ FY+ WC C P F+ L +
Sbjct: 12 TFNEK-VLQG-KTHWVVDFYAPWCGPCQNFAPEFELLARMI 50
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 33.5 bits (76), Expect = 0.34
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 876 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---EQGLARRLGVGSQLPQ 932
+++F + C C + K E + G G + A + V + +P+
Sbjct: 137 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPK 195
Query: 933 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL 962
I + +G E ++ + +E L
Sbjct: 196 IVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 31.9 bits (73), Expect = 0.38
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQG 919
NF+ I + T I FY+ WC C + P +++L + P V V E+
Sbjct: 14 NFDD-TIAEGIT---FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN 69
Query: 920 LARRLGV 926
+ + V
Sbjct: 70 ICSKYSV 76
Score = 30.3 bits (69), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 796
NF+ I + T I FY+ WC C + P +++L + P
Sbjct: 14 NFDD-TIAEGIT---FIKFYAPWCGHCKTLAPTWEELSKKEFP 52
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 32.7 bits (74), Expect = 0.38
Identities = 8/63 (12%), Positives = 25/63 (39%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
P +++ + + C ++ +F + + F +++ +E G +P+I
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIM 105
Query: 935 LLT 937
+
Sbjct: 106 FVD 108
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 32.3 bits (74), Expect = 0.45
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
F+ + +L+Y W + ++ L S
Sbjct: 24 TFDSIVMDPEKDV--FVLYYVPWSRHSVAAMRLWDDLSMSQS 63
Score = 32.3 bits (74), Expect = 0.45
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 903
F+ + +L+Y W + ++ L S
Sbjct: 24 TFDSIVMDPEKDV--FVLYYVPWSRHSVAAMRLWDDLSMSQS 63
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 31.9 bits (72), Expect = 0.53
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 876 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE------QGLARRLGVGSQ 929
C C + ++ E + ++ Q R G+ +
Sbjct: 32 ATFFIGRKTCPYCRKFAGTLSGVVAE---TKAHIYFINSEEPSQLNDLQAFRSRYGIPT- 87
Query: 930 LPQIALLTDGRTSFFKEPSFSVQKMVEFFRL 960
+P +TDG+ + + S S Q++ +F L
Sbjct: 88 VPGFVHITDGQINVRCDSSMSAQEIKDFAGL 118
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 32.7 bits (74), Expect = 0.70
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 859 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG------VGFFTV 912
F K IPKS L+ F + + + Q FK+L + + VG
Sbjct: 11 DTVTFYK-VIPKSKFV--LVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY 65
Query: 913 HVHNEQGLARRLGVGSQ-LPQIALLTDGRTSFFK--EPSFSVQKMVEF 957
L+ + + + P L DG + V + +
Sbjct: 66 GDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRW 113
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 31.2 bits (71), Expect = 0.86
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHN 916
+F+ + S TP ++ F++ WC C + P +K++ + G V V + +
Sbjct: 18 QDGPDFQDRVV-NS-ETPVVVDFHAQWCGPCKILGPRLEKMVAKQH--GKVVMAKVDIDD 73
Query: 917 EQGLARRLGVGSQLPQIALLTDGR 940
LA V + +P + + +G
Sbjct: 74 HTDLAIEYEVSA-VPTVLAMKNGD 96
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 31.3 bits (71), Expect = 0.96
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT------VHVHNEQGLARRLGVG 927
++ YS C C + P + E+ V F + + + GV
Sbjct: 32 GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVE 91
Query: 928 SQLPQIALLTDGR 940
P + +GR
Sbjct: 92 G-TPTLVFYKEGR 103
Score = 28.6 bits (64), Expect = 8.1
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 766 TPHLILFYSDWCFACLQVEPIFKKLMDEL 794
++ YS C C + P + E+
Sbjct: 32 GDAILAVYSKTCPHCHRDWPQLIQASKEV 60
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 30.4 bits (69), Expect = 1.1
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 856 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 915
+ T +F+ + L+ F++ C C + P+ ++L + + V
Sbjct: 6 VKVTDADFDSK-VESG---VQLVDFWATACGPCKMIAPVLEELAADYEG-KADILKLDVD 60
Query: 916 NEQGLARRLGVGSQLPQIALLTDG 939
A + V S +P + + DG
Sbjct: 61 ENPSTAAKYEVMS-IPTLIVFKDG 83
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 30.3 bits (69), Expect = 1.3
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+F+++ + K+ + L+ F+++WC C + P ++ E + V V++ +
Sbjct: 11 SFDQDVL-KA-SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETP 67
Query: 922 RRLGVGSQLPQIALLTDG 939
V S +P + L+ DG
Sbjct: 68 NAYQVRS-IPTLMLVRDG 84
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 30.9 bits (70), Expect = 1.3
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNE----QGLARRLGVGSQ 929
P ++ Y+DWC AC + E L +V L + L V
Sbjct: 33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG- 91
Query: 930 LPQIALL 936
LP I
Sbjct: 92 LPTILFF 98
Score = 29.8 bits (67), Expect = 3.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 767 PHLILFYSDWCFACLQVEPI 786
P ++ Y+DWC AC + E
Sbjct: 33 PVMLDLYADWCVACKEFEKY 52
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 30.4 bits (69), Expect = 1.3
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 920
+FE++ + K+ P L+ F++ WC C Q+ P + + E + +++ G
Sbjct: 14 SFEQDVL-KN-DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENPGT 69
Query: 921 ARRLGVGSQLPQIALLTDG 939
A + GV S +P + + G
Sbjct: 70 AAKYGVMS-IPTLNVYQGG 87
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 30.4 bits (69), Expect = 1.4
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 856 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHV 914
L T NF++ + ++ L+ +++WC C EPI+KK+ ++ G F ++V
Sbjct: 7 LVLTEENFDE--VIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAVFGRLNV 61
Query: 915 HNEQGLARRLGVGSQLPQIALLTDG 939
Q +A + V + +P + +G
Sbjct: 62 DENQKIADKYSVLN-IPTTLIFVNG 85
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural
genomics, PSI, protein struc initiative; 1.80A
{Agrobacterium tumefaciens str} SCOP: c.47.1.19
Length = 270
Score = 31.7 bits (71), Expect = 1.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 771 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASR 823
LF S C +C + +K++ + +G+ + +++ G TD + +++ R
Sbjct: 48 LFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTER 100
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 30.4 bits (69), Expect = 1.7
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
Query: 877 LILFYSDWCFACLQVE------PIFKKLMDELSPLGVGFFTVHV----HNEQGLARRLGV 926
++ F+S+ C C Q+ P +L++ F V Q LARR V
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA------RFVVASVSVDTPEGQELARRYRV 76
Query: 927 GSQLPQIALLT 937
P L
Sbjct: 77 PG-TPTFVFLV 86
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 30.5 bits (69), Expect = 1.9
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 859 THWNFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 916
+F + + ++ L+ ++ WC C ++ + K F + +
Sbjct: 12 RELSFPEA-LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDM 70
Query: 917 EQG----LARRLGVGS 928
E+G L ++ GV +
Sbjct: 71 EKGEGVELRKKYGVHA 86
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 31.5 bits (71), Expect = 2.1
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 700 LFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDI 742
L G + S +F N + D +G + E+ I
Sbjct: 86 LGGADAHIELKKSQESDFVNEIIRLVDTYGFDGLDIDLEQAAI 128
Score = 31.5 bits (71), Expect = 2.1
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 808 LFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDI 850
L G + S +F N + D +G + E+ I
Sbjct: 86 LGGADAHIELKKSQESDFVNEIIRLVDTYGFDGLDIDLEQAAI 128
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 30.8 bits (70), Expect = 3.0
Identities = 11/60 (18%), Positives = 20/60 (33%)
Query: 166 AAASLAQSMVTDEALGIKLHEFHEATNERPDHEFHEATNERPDHEFHEATNERPDHEFHE 225
A+ A + D A GI E + + + E H+ + E+ E+
Sbjct: 70 LKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMV 129
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 29.7 bits (66), Expect = 3.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 867 YIPKSYTTPHLILFYSD-------WCFACLQVEPIFKKLMDELSPLGVGFFTVHV 914
+ + F WC C+Q EP+ ++ + + G F V
Sbjct: 18 AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI-SEGCVFIYCQV 71
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 29.7 bits (67), Expect = 3.2
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 920
+F+ + + K+ L+ F+++WC + PI ++ DE G + +++ G
Sbjct: 31 SFDTDVL-KA-DGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGT 86
Query: 921 ARRLGVGSQLPQIALLTDG 939
A + G+ +P + L +G
Sbjct: 87 APKYGIRG-IPTLLLFKNG 104
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 29.6 bits (67), Expect = 3.3
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGL 920
+F + + S P L+ F++ WC C V P+ +++ E + L V + V
Sbjct: 21 SFATDVL-SS-NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVA--KLDVDTNPET 76
Query: 921 ARRLGVGSQLPQIALLTDGR 940
AR V S +P + L DG+
Sbjct: 77 ARNFQVVS-IPTLILFKDGQ 95
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.5 bits (68), Expect = 3.6
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 635 VSLDPYETLG--VPRTASLQEIRKNYKRLVVE-WHPDKNN------DPTAQEKFLQLTEA 685
++ +P+E + +P + + + D+ N D ++ ++Q
Sbjct: 166 IAYEPFENIAIELP---PNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF--- 219
Query: 686 YNILSDAERRKQYDL 700
++Q D+
Sbjct: 220 ---FFKQAEQEQADV 231
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase,
ATP-binding, ligas binding, nucleotide-binding, protein
biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB:
3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A*
1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 31.0 bits (71), Expect = 3.8
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 1345 FHAMVWP-------YRKNKSLM-FGYLNIERKQ---SREW--FKDILLEALPPD 1385
F ++ WP +RK +L GY+ + + SR L D
Sbjct: 313 FLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 366
>3sxm_A Transcriptional regulator, GNTR family; transcription factor,
metal-binding, structur genomics, PSI-2, protein
structure initiative; 1.55A {Thermotoga maritima} PDB:
3sxk_A 3sxz_A
Length = 140
Score = 29.6 bits (67), Expect = 4.1
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 5/49 (10%)
Query: 166 AAASLAQSMVTDEALGIKLHEFHEATNERPDHEFHEATNERPDHEFHEA 214
+ + E L E + F ++ D H+
Sbjct: 22 CLENYFDKIAGSEELLEIKGEIDDVAASAAREIFDDS-----DERLHKL 65
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 31.0 bits (69), Expect = 4.7
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 371 LAQALQDKCLLREKGEVDQLFLEDFGCTHSQLFRSFDENPIAAASLAQVFRAVTKEGVEV 430
L L+ L E L DF H F N +L + A +G E
Sbjct: 497 LEHFLETIRLEPSLNEATDSVLNDFVMMH----CVFMPNTQLCPALVAHYHAQPSQGTEQ 552
Query: 431 AVKVQYIDLRERFV 444
++ + R +
Sbjct: 553 ERMDYALNNKRRVI 566
>1vzv_A Assemblin, varicella-zoster virus protease; hydrolase, serine
protease, viral protease, varicella-zoster coat protein;
3.00A {Human herpesvirus 3} SCOP: b.57.1.1
Length = 221
Score = 30.2 bits (68), Expect = 4.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 1361 GYLNIERKQSREWF--KDILLEALPPDTPLAIN----PRNCIGTVLSI-NGYRKYFCM 1411
GYL + K E +I+ ALPP + + IN +G V++I R F +
Sbjct: 7 GYLALYSKDEGELNITPEIVRSALPPTSKIPINIDHRKDCVVGEVIAIIEDIRGPFFL 64
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 28.8 bits (65), Expect = 4.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 874 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
L F++ WC + P+ ++L E+ + + V Q A + GV S +P +
Sbjct: 18 GVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMS-IPTL 75
Query: 934 ALLTDG 939
+L DG
Sbjct: 76 LVLKDG 81
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 30.6 bits (70), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1303 QELKLHALR--AETYNGLVVLLKPGCRTLI 1330
+ KL R ++ Y +V+LLK G TLI
Sbjct: 364 LDNKLEIARDFSQKYPKVVLLLK-GANTLI 392
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu
horikoshii OT3, PSI, protein structure initiative; 2.50A
{Pyrococcus horikoshii} SCOP: e.67.1.1
Length = 241
Score = 29.7 bits (66), Expect = 6.4
Identities = 13/77 (16%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 47 IKRFIRSSYTVAVISFDYWWSLRDIDEDSEYYPSILASVHQRSANRILSMCLTNGGLYIK 106
+K + S + +++ + + +RD+DE ++ + +L+ + +R +T G
Sbjct: 75 LKSVLDS-VKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNGAIVTEGVKIYP 133
Query: 107 LGQGMVSLDHVLPRQYP 123
G G ++L+ ++
Sbjct: 134 YGMGNLTLNEPFVKEKK 150
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 30.0 bits (68), Expect = 6.6
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 159 SFDENPIAAASLAQSMVTDEALGIKLHEFHEATNERPDHEFHEATNERPDHE 210
+F + P++ A+ + + +K + DH+ E ++E H
Sbjct: 61 AFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHG 112
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 29.3 bits (65), Expect = 9.2
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 877 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 936
++ Y D C + L E V F + + G R LP + +
Sbjct: 137 VVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKA-SNTGAGDRFSSDV-LPTLLVY 192
Query: 937 TDG 939
G
Sbjct: 193 KGG 195
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 29.0 bits (65), Expect = 9.6
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 920
+F+ + + K+ L+ F+++WC C + PI ++ DE G + +++ G
Sbjct: 21 SFDTDVL-KA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGT 76
Query: 921 ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP 963
A + G+ +P + L +G + K + S ++ EF L
Sbjct: 77 APKYGIRG-IPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,787,442
Number of extensions: 1550787
Number of successful extensions: 3470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3372
Number of HSP's successfully gapped: 244
Length of query: 1578
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1472
Effective length of database: 3,742,167
Effective search space: 5508469824
Effective search space used: 5508469824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.4 bits)