RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12972
(1578 letters)
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 80.5 bits (198), Expect = 5e-19
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 697
D Y+TLG+ R AS +EI++ Y+R + +HPDKN +P A+EKF ++ EAY++LSD +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 698 YDLFGTTDGFSG 709
+D +G +G G
Sbjct: 64 FDRYG-EEGLKG 74
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 76.2 bits (187), Expect = 2e-17
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 696
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 697 QYDLFG 702
YD +G
Sbjct: 64 AYDQYG 69
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 73.2 bits (179), Expect = 4e-16
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK-------FLQLTEAYNILS 690
D Y LG +A++ ++++ Y++L++ +HPDK + F+++ +A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 691 DAERRKQYDLFGTTDGFSG 709
+ E +K+YDL + SG
Sbjct: 77 NEETKKKYDLQR-SGPSSG 94
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 69.3 bits (169), Expect = 6e-15
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 636 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 693
E L +PR +++ YK+ + HPDK +L +
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEV 66
Query: 694 RRKQYDLFGTT 704
+ +L GT
Sbjct: 67 YNLRMNLGGTG 77
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 67.0 bits (163), Expect = 3e-14
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 637 LDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYNI 688
+D + G+P L Q + ++ L ++HPDK + E+ + +A+
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 689 LSDAERRKQYDL 700
L R +Y L
Sbjct: 61 LRHPLMRAEYLL 72
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 67.5 bits (164), Expect = 6e-14
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 636 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 693
SL + LG+ R+A ++ +RK Y + E+HPDK D +K Y + D
Sbjct: 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM---NTLYKKMEDGV 63
Query: 694 RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPF--DDVFSEGFNFPFEEHD 741
+ FG + + + +N F +++F ++
Sbjct: 64 KYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 64.2 bits (156), Expect = 5e-13
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQ----EKFLQLTEAYNILSDAE 693
++ +G+ + ++++K Y++ V+ HPDK + F++L +A++ +
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 694 RRKQY 698
++ Y
Sbjct: 94 QKPLY 98
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 57.8 bits (139), Expect = 7e-11
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 638 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTA--QEKFLQLTEAYNILSDAERR 695
+ + E +K +RL ++WHPDKN + E F L N L
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76
Query: 696 KQYD 699
Q
Sbjct: 77 DQNA 80
>d1twfh_ b.40.4.8 (H:) RNA polymerase subunit RBP8 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 145
Score = 56.3 bits (136), Expect = 1e-09
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 534 LLEKGFSLADVDRKLFTAFAEQIFQTGFVHADPHSGN------DVNTWLYPVDLGDKFRL 587
L + F +++VD + + + A + + D+N L+PV D +
Sbjct: 4 LFDDIFQVSEVDPGRY-------NKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 56
Query: 588 VLATTLREDGYPDSGE 603
+A++L + P +
Sbjct: 57 TIASSLNLEDTPANDS 72
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 40.4 bits (94), Expect = 2e-04
Identities = 6/68 (8%), Positives = 17/68 (25%)
Query: 866 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 925
++I + L+ + +L+ E + + + R
Sbjct: 23 DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN 82
Query: 926 VGSQLPQI 933
V +
Sbjct: 83 VRRFPATL 90
Score = 32.7 bits (74), Expect = 0.095
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 758 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
++I + L+ + +L+ E
Sbjct: 23 DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF 59
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 38.9 bits (90), Expect = 0.001
Identities = 6/61 (9%), Positives = 14/61 (22%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
L+ + +L+ E + + + R GV +
Sbjct: 38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97
Query: 935 L 935
Sbjct: 98 F 98
Score = 31.9 bits (72), Expect = 0.24
Identities = 3/38 (7%), Positives = 7/38 (18%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 804
L+ + +L+ E
Sbjct: 38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIA 75
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 34.7 bits (79), Expect = 0.014
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
N + P L LF C C + + + + D + + +
Sbjct: 4 GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENSTWY 60
Query: 922 RRLG 925
R
Sbjct: 61 ERYK 64
Score = 32.8 bits (74), Expect = 0.061
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
N + P L LF C C + + + + D
Sbjct: 4 GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI 45
>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 34.2 bits (78), Expect = 0.082
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 771 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASR 823
LF S C +C + +K++ + +G+ + +++ G TD + +++ R
Sbjct: 11 LFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTER 63
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 32.7 bits (74), Expect = 0.086
Identities = 16/113 (14%), Positives = 28/113 (24%), Gaps = 16/113 (14%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-------VGFFTVHV 914
+FEK + + ++ F + F VG
Sbjct: 11 SFEK-TVERF--PYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE 65
Query: 915 HNEQGLARRLGV-GSQLPQIALLTDGRTSFFKEP---SFSVQKMVEFFRLKLP 963
+ L R V P I L + + P ++ + F P
Sbjct: 66 LENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 118
Score = 31.2 bits (70), Expect = 0.34
Identities = 8/91 (8%), Positives = 18/91 (19%), Gaps = 6/91 (6%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTD 813
+FEK + + ++ F + F
Sbjct: 11 SFEK-TVERF--PYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVG-VKDYG 64
Query: 814 GFSGQDSASRNFHNHMYNPFDDVFSEGFNFP 844
+ R + P +F +
Sbjct: 65 ELENKALGDRYKVDDKNFPSIFLFKGNADEY 95
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 32.2 bits (72), Expect = 0.13
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
F+ + S P L+ F++ WC C + P+ ++ E + ++ +A
Sbjct: 10 TFKNVVLESS--VPVLVDFWAPWCGPCRIIAPVVDEIAGE-YKDKLKCVKLNTDESPNVA 66
Query: 922 RRLGVGSQ 929
G+ S
Sbjct: 67 SEYGIRSI 74
Score = 28.3 bits (62), Expect = 3.0
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
F+ + S P L+ F++ WC C + P+ ++ E
Sbjct: 10 TFKNVVLESS--VPVLVDFWAPWCGPCRIIAPVVDEIAGE 47
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 31.2 bits (70), Expect = 0.15
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 876 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 935
++ +F S C C + + E + + + A G+ + +P IA+
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD-REKAIEYGLMA-VPAIAI 61
Query: 936 LTDGR 940
R
Sbjct: 62 NGVVR 66
Score = 28.9 bits (64), Expect = 1.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 768 HLILFYSDWCFACLQVEPIFKKLM 791
++ +F S C C + +
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAK 27
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 31.4 bits (70), Expect = 0.24
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 933
P ++ F++ WC C + P+ +L E S + + ++ G+A + + S +
Sbjct: 19 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVL 76
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 31.1 bits (70), Expect = 0.31
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 794
F K IPKS L+ F + + + Q FK+L +
Sbjct: 13 TFYK-VIPKS--KFVLVKFDTQYPYGEKQ--DEFKRLAENS 48
Score = 31.1 bits (70), Expect = 0.31
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 902
F K IPKS L+ F + + + Q FK+L +
Sbjct: 13 TFYK-VIPKS--KFVLVKFDTQYPYGEKQ--DEFKRLAENS 48
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.9 bits (69), Expect = 0.51
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 858 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 917
W ++ I +I F DW C++++ + + +++ V + V +
Sbjct: 8 HNGWQVDQA-ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAV-IYLVDITEV 65
Query: 918 QGLARRLGVGSQLPQI 933
+ + +
Sbjct: 66 PDFNKMYELYDPCTVM 81
Score = 29.7 bits (66), Expect = 1.4
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 750 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
W ++ I +I F DW C++++ + + +++ V + +
Sbjct: 8 HNGWQVDQA-ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE 64
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 278
Score = 31.8 bits (72), Expect = 0.54
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 708 SGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSY--- 764
S D+A +N +++ D F E F+ + F+ T ++I +
Sbjct: 7 SESDTAGQNIKDNLLTFAD--FEEKDVGEFKLYLSDEFYIAETKERLIYADHIDEKLAKY 64
Query: 765 TTPHLILFYS 774
ILF S
Sbjct: 65 IDFEEILFAS 74
Score = 31.8 bits (72), Expect = 0.54
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 816 SGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSY--- 872
S D+A +N +++ D F E F+ + F+ T ++I +
Sbjct: 7 SESDTAGQNIKDNLLTFAD--FEEKDVGEFKLYLSDEFYIAETKERLIYADHIDEKLAKY 64
Query: 873 TTPHLILFYS 882
ILF S
Sbjct: 65 IDFEEILFAS 74
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 30.2 bits (67), Expect = 0.60
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
N+ + + T LI FY+ WC C + P +++L + V +
Sbjct: 11 NYNE-IVLDD-TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN 68
Query: 922 RRLGVGSQLPQIALLTDGR 940
P I L G
Sbjct: 69 DVPDEIQGFPTIKLYPAGA 87
Score = 27.5 bits (60), Expect = 5.5
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 795
N+ + + T LI FY+ WC C + P +++L +
Sbjct: 11 NYNE-IVLDD-TKDVLIEFYAPWCGHCKALAPKYEELGALYA 50
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 29.9 bits (66), Expect = 0.80
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR--RLGVGSQLPQ 932
C C + ++ E + L +P
Sbjct: 28 TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG 87
Query: 933 IALLTDGRTSFFKEPSFSVQKMVEFFRL 960
+TDG+ + + S S Q++ +F L
Sbjct: 88 FVHITDGQINVRCDSSMSAQEIKDFAGL 115
Score = 28.0 bits (61), Expect = 4.5
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDEL 794
C C + ++ E
Sbjct: 28 TATFFIGRKTCPYCRKFAGTLSGVVAET 55
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 29.4 bits (65), Expect = 1.1
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
+F+ + + L+ F+++WC C + PI ++ DE + +++ G A
Sbjct: 11 SFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADE-YQGKLTVAKLNIDQNPGTA 67
Query: 922 RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF 957
+ G+ +P + L +G + K + S ++ EF
Sbjct: 68 PKYGIRG-IPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 28.6 bits (63), Expect = 1.9
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 754 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 793
+F+ + + L+ F+++WC C + PI ++ DE
Sbjct: 11 SFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADE 48
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 29.2 bits (64), Expect = 3.0
Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 5/77 (6%)
Query: 767 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYDLFGTTDGFSGQDSASRNFH 826
L++ WC C + + + Q A
Sbjct: 56 YRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQRLALERIA 110
Query: 827 NHMYNPFDDVFSEGFNF 843
+ D+ F+ F
Sbjct: 111 IPLVLVLDEEFNLLGRF 127
Score = 28.4 bits (62), Expect = 4.6
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDE 901
L++ WC C
Sbjct: 56 YRLLVAGEMWCPDCQINLAALDFAQRL 82
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 28.2 bits (63), Expect = 3.1
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 1199 SLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFT 1258
+ L+ + SD I +G+ I +++ + + + F
Sbjct: 24 KFTDSIITPLINRIGVNAQSDVGILRIGIGGGQTIDLNVLL-------SAAINFFLIAFA 76
Query: 1259 VIIIVVLAMIMNHYMKLEEEEIPSTT 1284
V +VVL N K E E P T
Sbjct: 77 VYFLVVLPY--NTLRKKGEVEQPGDT 100
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 191
Score = 29.0 bits (64), Expect = 3.3
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 409 NPIAAASLAQVFRAVTKEGVEVAVKVQYIDLRE 441
+ + VF +++ E VK +
Sbjct: 6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTS 38
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 27.9 bits (61), Expect = 4.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 875 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 934
P ++ F + WC C + P+F+ L ++ V F V V +A G+ + +P
Sbjct: 26 PIVVDFTATWCGPCKMIAPLFETLSNDY-AGKVIFLKVDVDAVAAVAEAAGITA-MPTFH 83
Query: 935 LLTDGR 940
+ DG
Sbjct: 84 VYKDGV 89
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 27.8 bits (61), Expect = 4.1
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 846 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 905
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 906 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 940
V F V V + +A V + +P L DG+
Sbjct: 57 NVTFLKVDVDELKAVAEEWNVEA-MPTFIFLKDGK 90
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 26.7 bits (59), Expect = 5.1
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1130 AFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKY 1172
A+M + +E++ +WR K ++
Sbjct: 10 AYMLWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKDKSEW 51
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 27.6 bits (60), Expect = 5.2
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 768 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHYD 807
+++F + C C + K E + G G
Sbjct: 18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMV 57
Score = 27.2 bits (59), Expect = 6.0
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 876 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 916
+++F + C C + K E + G G +
Sbjct: 18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVE 58
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 27.9 bits (61), Expect = 5.3
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 862 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 921
N ++ I L+L+Y+ WC C ++ P +++L D + + +
Sbjct: 21 NHDE--IVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN-ATSDVLIAKLDHTEND 77
Query: 922 RRLGVGSQLPQIALLTDGR 940
R V P I L G+
Sbjct: 78 VRGVVIEGYPTIVLYPGGK 96
>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId:
10335]}
Length = 221
Score = 28.6 bits (64), Expect = 5.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 1361 GYLNIERKQSREWF--KDILLEALPPDTPLAIN----PRNCIGTVLSI-NGYRKYFCM 1411
GYL + K E +I+ ALPP + + IN +G V++I R F +
Sbjct: 7 GYLALYSKDEGELNITPEIVRSALPPTSKIPINIDHRKDCVVGEVIAIIEDIRGPFFL 64
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 85
Score = 26.7 bits (59), Expect = 6.7
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 1528 GLYEEVPSDIRESLCSLWKAIALNNHTDMRTYSKRLGVSEKDYRLF 1573
LY +P RE + L N R + LG + F
Sbjct: 2 NLYSSLPLTKREEVEK------LLNGDTWRHLAGELGYQPEHIDSF 41
>d1o6ea_ b.57.1.1 (A:) Epstein-Barr virus protease {Human herpesvirus
4 [TaxId: 10376]}
Length = 232
Score = 28.2 bits (63), Expect = 7.8
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 1361 GYLNI--ERKQSREWF--KDILLEALPPDTPLAIN----PRNCIGTVLSI-NGYRKYFCM 1411
G++ + + LP PL + P +G+V + F
Sbjct: 8 GFVERPDAPPKDACLHLDPLTVKSQLPLKKPLPLTVEHLPDAPVGSVFGLYQSSAGLFSA 67
>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 228
Score = 27.8 bits (62), Expect = 8.2
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 1361 GYLNI--ERKQSREWF--KDILLEALPPDTPLAIN----PRNCIGTVLSI-NGYRKYFCM 1411
G++++ K +E + D + + LP PL I P +G L + FC
Sbjct: 7 GFVDVVSCPKLEQELYLDPDQVTDYLPVTEPLPITIEHLPETEVGWTLGLFQVSHGIFCT 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,091,754
Number of extensions: 297675
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 71
Length of query: 1578
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1481
Effective length of database: 1,075,786
Effective search space: 1593239066
Effective search space used: 1593239066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)