Query psy12975
Match_columns 205
No_of_seqs 12 out of 14
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 15:57:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qzm_A ATP-dependent protease 61.5 1.8 6.2E-05 31.9 0.2 19 182-200 15-33 (94)
2 1whz_A Hypothetical protein; a 50.6 3.3 0.00011 27.5 0.0 41 150-197 26-66 (70)
3 3r8n_E 30S ribosomal protein S 32.0 56 0.0019 25.7 4.4 46 150-195 68-113 (150)
4 3i1m_E 30S ribosomal protein S 24.7 66 0.0023 25.8 3.7 45 151-195 78-122 (167)
5 2k4p_A Phosphatidylinositol-3, 22.0 25 0.00086 25.0 0.6 34 168-201 13-46 (86)
6 1pkp_A Ribosomal protein S5; 2 19.6 43 0.0015 26.4 1.6 45 150-194 77-121 (150)
7 2vqe_E 30S ribosomal protein S 17.7 52 0.0018 26.3 1.7 46 149-194 71-116 (162)
8 3j20_F 30S ribosomal protein S 16.3 67 0.0023 27.4 2.1 44 152-195 139-182 (236)
9 1cks_A Cyclin-dependent kinase 15.4 42 0.0014 24.7 0.6 42 145-196 10-51 (79)
10 3bbn_E Ribosomal protein S5; s 14.7 93 0.0032 27.6 2.6 43 152-194 221-263 (308)
No 1
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=61.53 E-value=1.8 Score=31.89 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCchhhhhhhccCcccccc
Q psy12975 182 PLVPKQIKAIGLDRDERHF 200 (205)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~ 200 (205)
-|+|||+|+.||+.++-.|
T Consensus 15 ~LiPkql~~~GL~~~~~~i 33 (94)
T 1qzm_A 15 HLLPKQIERNALKKGELTV 33 (94)
T ss_dssp THHHHHHHHTTCCTTTEEE
T ss_pred hccHHHHHHhCCChhhceE
Confidence 5899999999999876443
No 2
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=50.57 E-value=3.3 Score=27.46 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCccc
Q psy12975 150 GQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDRDE 197 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (205)
|.|..|+| +-.+ ..+-|+.+ |...+.++-+-+|.+||+++|
T Consensus 26 GSH~~~~~----~~~~-~~~vP~h~--~ei~~g~lk~Ilkqagl~~ee 66 (70)
T 1whz_A 26 GGHRLYTH----PDGR-IVVVPFHS--GELPKGTFKRILRDAGLTEEE 66 (70)
T ss_dssp TTEEEEEC----TTSC-EEEEECSS--SSCCHHHHHHHHHHTTCCHHH
T ss_pred CCCceEec----CCCC-eeEecCCc--CcCCHHHHHHHHHHcCCCHHH
Confidence 66776665 2233 34445443 355556666667889998765
No 3
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=31.97 E-value=56 Score=25.70 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCc
Q psy12975 150 GQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDR 195 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (205)
..|--+..|+-.-++-+|++.|+||-.|-.+.+.+-+-+...|++-
T Consensus 68 ~~~Tip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~D 113 (150)
T 3r8n_E 68 NNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHN 113 (150)
T ss_dssp SSSSCSSCEEEEETTEEEEEECCCCSSCCBSCTTTHHHHHHTCCSS
T ss_pred CCCeeeeEEeeEEccEEEEEEcCCCcCceecCcHHHHHHHhCCcce
Confidence 3455566677777889999999999999999998888888889863
No 4
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=24.66 E-value=66 Score=25.79 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCc
Q psy12975 151 QHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDR 195 (205)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (205)
.|--+..|+-.-++-+|++.|+||-.|-.+.+.+-+-+...|++-
T Consensus 78 ~~Tip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~D 122 (167)
T 3i1m_E 78 NGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHN 122 (167)
T ss_dssp TTBCSSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCS
T ss_pred CCeeeeEeeeeeccEEEEEEcCCCccceecCcHHHHHHHhCCcce
Confidence 455555677777889999999999999999998888888888863
No 5
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=21.98 E-value=25 Score=24.97 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred eecCCCCCCCCCCCCCchhhhhhhccCccccccC
Q psy12975 168 CVTPRPRRSGTASPPLVPKQIKAIGLDRDERHFR 201 (205)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (205)
-+.|+++|.+...+--|..-++.|||.+-...|.
T Consensus 13 ~~~~~~~~~~~~~~~~V~eWL~~lgL~qY~~~F~ 46 (86)
T 2k4p_A 13 GLVPRGSHMSGLGEAGMSAWLRAIGLERYEEGLV 46 (86)
T ss_dssp ---------CCCCSCSSHHHHHTTTCGGGHHHHH
T ss_pred CCCCCCCcCCCCCcCcHHHHHHHCCCHHHHHHHH
Confidence 4569999999999999999999999988766663
No 6
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=19.62 E-value=43 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=37.0
Q ss_pred CCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 150 GQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
++|--|.-|+-.-++-+|++-|+||-.|-...+.+-+-+...|++
T Consensus 77 ~~~Tip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~ 121 (150)
T 1pkp_A 77 VGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGIS 121 (150)
T ss_dssp BTTBCSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCC
T ss_pred CCceeeEEEEEEECCEEEEEEECCCCCccccCcHHHHHHHhcCcc
Confidence 346555557777789999999999999998888888888888986
No 7
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=17.68 E-value=52 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 149 PGQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
-+.|--+--|+-.-++-+|++.|+||-.|-...+.+-+-+...|++
T Consensus 71 ~~~~TIp~~v~gk~gs~~V~l~Pap~GtGiiag~~~r~vl~~aGI~ 116 (162)
T 2vqe_E 71 LQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVT 116 (162)
T ss_dssp CSTTSCSSCEEEEETTEEEEEEECCTTSCEESCHHHHHHHHTTTCC
T ss_pred cCCCcccEEEEEEeCcEEEEEEECCCCcceecCcHHHHHHHhcCcc
Confidence 3456455556777788999999999999988888888888888886
No 8
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=16.32 E-value=67 Score=27.38 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=35.4
Q ss_pred CcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCc
Q psy12975 152 HDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDR 195 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (205)
|-.+..|+-.-++-+|++.|+||-.|-.+.+.+-+-+...|++.
T Consensus 139 hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAGI~D 182 (236)
T 3j20_F 139 HSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQD 182 (236)
T ss_dssp CBCSSCEEEEETTEEEEEECCCSSCCCBSCHHHHHHHHHHTCCC
T ss_pred CceeeEEEEEECCEEEEEEcCCCcCCcccCcHHHHHHHhCCcce
Confidence 44455566666789999999999999998888878888888863
No 9
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=15.43 E-value=42 Score=24.69 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=26.1
Q ss_pred cccCCCCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCcc
Q psy12975 145 EKYSPGQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDRD 196 (205)
Q Consensus 145 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (205)
.||.|.++ .||||.+-.=..|. .|+- --|--.++..||+...
T Consensus 10 ~kY~Dd~y-eYRhViLpke~~k~--vpk~-------~LlsE~EWR~LGIqqS 51 (79)
T 1cks_A 10 DKYFDEHY-EYRHVMLPRELSKQ--VPKT-------HLMSEEEWRRLGVQQS 51 (79)
T ss_dssp CCEECSSC-EECCEECCHHHHHT--SCSS-------SCCCHHHHHHHTCCCC
T ss_pred CCccCCCe-EEEEEEcCHHHHHh--CCcc-------cccCHHHHHHhCcccC
Confidence 46777664 59999986544432 1221 2455678888888754
No 10
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=14.65 E-value=93 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=35.5
Q ss_pred CcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 152 HDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
|-.+.-|+-.-++-+|++.|+||-.|-...+.+-+-+..+|++
T Consensus 221 hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~vr~VLelAGIk 263 (308)
T 3bbn_E 221 LTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVE 263 (308)
T ss_dssp SBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTTCC
T ss_pred cccceEEEEEEeeEEEEEEECCCCCceecCcHHHHHHHhcCcc
Confidence 4444456777789999999999999999888888888889986
Done!