Query psy12975
Match_columns 205
No_of_seqs 12 out of 14
Neff 1.9
Searched_HMMs 13730
Date Fri Aug 16 15:57:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12975.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12975hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qzma_ c.37.1.20 (A:) ATPase 45.5 2.2 0.00016 29.0 0.2 19 182-200 15-33 (94)
2 d1whza_ d.50.3.2 (A:) Hypothet 43.6 2.3 0.00017 27.7 -0.0 42 149-197 25-66 (70)
3 d1puca_ d.97.1.1 (A:) suc1 {Fi 13.5 37 0.0027 24.2 1.6 49 146-196 29-78 (101)
4 d2ghvc1 d.318.1.1 (C:320-502) 10.7 47 0.0034 25.9 1.5 23 143-166 125-147 (183)
5 d1pkpa1 d.14.1.1 (A:78-148) Ri 9.6 43 0.0032 21.8 0.8 37 158-194 8-44 (71)
6 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 8.7 62 0.0045 23.3 1.5 49 146-196 28-77 (113)
7 d2qale1 d.14.1.1 (E:78-158) Ri 8.6 51 0.0037 21.9 0.9 37 158-194 7-43 (81)
8 d2uube1 d.14.1.1 (E:74-154) Ri 7.6 60 0.0044 21.6 0.9 37 158-194 7-43 (81)
9 d1iuha_ d.61.1.2 (A:) 2'-5' RN 6.4 95 0.0069 20.8 1.5 13 190-202 117-129 (183)
10 d1oqya2 a.5.2.1 (A:317-360) DN 6.2 70 0.0051 19.8 0.6 12 186-197 9-20 (44)
No 1
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}
Probab=45.50 E-value=2.2 Score=29.00 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCchhhhhhhccCcccccc
Q psy12975 182 PLVPKQIKAIGLDRDERHF 200 (205)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~ 200 (205)
-|+|||++..||..++-.|
T Consensus 15 yLiPk~l~~~gl~~~~i~i 33 (94)
T d1qzma_ 15 HLLPKQIERNALKKGELTV 33 (94)
T ss_dssp THHHHHHHHTTCCTTTEEE
T ss_pred HhHHHHHHHhccccccccc
Confidence 3799999999999876544
No 2
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=43.56 E-value=2.3 Score=27.67 Aligned_cols=42 Identities=26% Similarity=0.471 Sum_probs=29.2
Q ss_pred CCCCcceeeeeeccccceeeecCCCCCCCCCCCCCchhhhhhhccCccc
Q psy12975 149 PGQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDRDE 197 (205)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (205)
.|-|.-|+| ...+++|.|. .++.-.+.++-+-+|.+||+++|
T Consensus 25 kGSH~~~~~-----~~~~~~~v~~--~~kei~~gtl~~Ilkqagl~~ee 66 (70)
T d1whza_ 25 KGGHRLYTH-----PDGRIVVVPF--HSGELPKGTFKRILRDAGLTEEE 66 (70)
T ss_dssp ETTEEEEEC-----TTSCEEEEEC--SSSSCCHHHHHHHHHHTTCCHHH
T ss_pred CCceeEEEc-----CCCCEEEcCC--CCCccCHHHHHHHHHHhCCCHHH
Confidence 366777776 2344555443 36677788888889999999876
No 3
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=13.50 E-value=37 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=26.0
Q ss_pred ccCCCCCcceeeeeeccc-cceeeecCCCCCCCCCCCCCchhhhhhhccCcc
Q psy12975 146 KYSPGQHDTYRHVTFEPC-ARKVCVTPRPRRSGTASPPLVPKQIKAIGLDRD 196 (205)
Q Consensus 146 ~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (205)
+|.|..+ .||||.+-.= +++|=..-.-- .+...--|--.++..||++..
T Consensus 29 kY~DD~y-eYRhViLpk~~~k~ipk~~~~~-~~g~~rLLtE~EWR~LGIqqS 78 (101)
T d1puca_ 29 RYADDEY-EYRHVMLPKAMLKAIPTDYFNP-ETGTLRILQEEEWRGLGITQS 78 (101)
T ss_dssp CEECSSC-EECCEECCHHHHTTSCGGGBCT-TTSSBCCCCHHHHHHTTCCCC
T ss_pred cccCCCe-EEEEEEeCHHHHHhcchhhccc-cccccccCCHHHHHHhccccC
Confidence 5555543 6999998433 33331111111 111223455678999998754
No 4
>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
Probab=10.71 E-value=47 Score=25.88 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.3
Q ss_pred cccccCCCCCcceeeeeeccccce
Q psy12975 143 HHEKYSPGQHDTYRHVTFEPCARK 166 (205)
Q Consensus 143 ~~~~~s~~~~~~~~~~~~~~~~~~ 166 (205)
.|.+|-++|||.- .+.|-|||+-
T Consensus 125 ~~~~~~~~~~d~~-~~~~~p~~~p 147 (183)
T d2ghvc1 125 RHGKLRPFERDIS-NVPFSPDGKP 147 (183)
T ss_dssp CSSCCCTTCCCCC-CCCBCTTCCC
T ss_pred ccccccCcccccc-cCccCCcCCC
Confidence 4789999999976 6789999973
No 5
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.59 E-value=43 Score=21.77 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.2
Q ss_pred eeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 158 VTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
|.-.-++-||.+.|.||-.|-..-+.+-+-++.+|++
T Consensus 8 v~gk~gs~~V~l~PAp~GtGliag~~vr~il~laGIk 44 (71)
T d1pkpa1 8 VIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGIS 44 (71)
T ss_dssp EEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCC
T ss_pred EEEEECeEEEEEEECCCCCccccCHHHHHHHHHcCcc
Confidence 4555688899999999999998888888888888875
No 6
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.73 E-value=62 Score=23.34 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=25.0
Q ss_pred ccCCCCCcceeeeeeccccceee-ecCCCCCCCCCCCCCchhhhhhhccCcc
Q psy12975 146 KYSPGQHDTYRHVTFEPCARKVC-VTPRPRRSGTASPPLVPKQIKAIGLDRD 196 (205)
Q Consensus 146 ~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (205)
+|.|.. -.||||.+-.=.+|.- ..-+--+.| ..--|--.++..||++..
T Consensus 28 kY~DD~-yeYRhViLpk~~~k~ipk~~~~~~~g-~~rLLtE~EWR~LGIqqS 77 (113)
T d1qb3a_ 28 RYSDDN-YEYRHVMLPKAMLKVIPSDYFNSEVG-TLRILTEDEWRGLGITQS 77 (113)
T ss_dssp CEECSS-EEEEEEECCHHHHHTSCGGGBCTTTS-SBCCCCHHHHHHTTCCCC
T ss_pred cccCCC-eeEEEEEeCHHHHHhcchhhcccccc-ccccCCHHHHHHhCcccC
Confidence 455544 3699999854433321 111111111 122455677888888754
No 7
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.57 E-value=51 Score=21.89 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred eeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 158 VTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
|.-.-|+-||.+.|.|+-.|-..-..|-+-++.+|+.
T Consensus 7 v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI~ 43 (81)
T d2qale1 7 VKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVH 43 (81)
T ss_dssp BCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHTCC
T ss_pred EEEEECcEEEEEEECCCCCccccCHHHHHHHHHcCcc
Confidence 3344578899999999999988888888888888874
No 8
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.65 E-value=60 Score=21.58 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=30.7
Q ss_pred eeeccccceeeecCCCCCCCCCCCCCchhhhhhhccC
Q psy12975 158 VTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLD 194 (205)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (205)
|.-.-|+-||.+.|+|+-.|-..-..|-+-++++|+.
T Consensus 7 v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGIk 43 (81)
T d2uube1 7 IEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVT 43 (81)
T ss_dssp EEEEETTEEEEEEECCTTCCEECCHHHHHHHHHTTCC
T ss_pred EEEEECcEEEEEEECCCCCcccccHHHHHHHHHhCcc
Confidence 4556688999999999999988888888888888874
No 9
>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}
Probab=6.41 E-value=95 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=11.0
Q ss_pred hhccCccccccCC
Q psy12975 190 AIGLDRDERHFRP 202 (205)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (205)
++|++.|+|.|+|
T Consensus 117 ~~~~~~~~r~f~P 129 (183)
T d1iuha_ 117 AVRIPGWDKPFKP 129 (183)
T ss_dssp GGGSTTTTSCCCC
T ss_pred ccCCCccCCCcCC
Confidence 4688889999998
No 10
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=70 Score=19.79 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=8.9
Q ss_pred hhhhhhccCccc
Q psy12975 186 KQIKAIGLDRDE 197 (205)
Q Consensus 186 ~~~~~~~~~~~~ 197 (205)
..++++|+||+.
T Consensus 9 eRL~~LGF~r~~ 20 (44)
T d1oqya2 9 ERLKALGFPESL 20 (44)
T ss_dssp HHHHHHTCCSHH
T ss_pred HHHHHcCCCHHH
Confidence 467888998863
Done!