RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12975
(205 letters)
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 44.1 bits (104), Expect = 2e-05
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 35 VTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTT 94
+ T SIT+ F S T E +++ + S TS + TT IT +VT T
Sbjct: 759 ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTS--ILIETTSVVITK---TVTQT 813
Query: 95 EPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCAT 134
+ + +S P+ TT+ ++ ++ + + T C
Sbjct: 814 QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853
Score = 42.9 bits (101), Expect = 6e-05
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 22 ETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTE 81
T SIT+ S T E ++ + S TS + TT IT +VT T+
Sbjct: 760 SGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTS--ILIETTSVVITK---TVTQTQ 814
Query: 82 PSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKES 117
+ +S P+ TT+ ++ + TTT PS T+
Sbjct: 815 TTTSSPSPTQTTSPTQTST--STTTTTSPSQTTTGG 848
Score = 38.3 bits (89), Expect = 0.002
Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 18 QTYSETTE-PSITSKEPSVTTTEPSITSKEPFVTTTEPSIT-----SKEPSVTTTEPSIT 71
T S + P ++T S+ T + T SIT
Sbjct: 709 TTLSSEAKNPDTVKIGQALTVYG-SLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSIT 767
Query: 72 SKEPSVTTTE--PSITSKEPSVTTTEPSITSKE------PSLTTTEPSITSKESSEITTE 123
+ P+ T S + + E T + TS S TT
Sbjct: 768 TSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTS 827
Query: 124 VSGTTTESCATTEPSTT 140
+ T+T + TT PS T
Sbjct: 828 PTQTSTSTTTTTSPSQT 844
Score = 35.6 bits (82), Expect = 0.014
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 11 KTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSI 70
KT T + T I + +T T VT T+ + +S P+ TT+
Sbjct: 782 KTETTLSYSAYSNTSILIETTSVVITKT----------VTQTQTTTSSPSPTQTTSPTQT 831
Query: 71 TSKEPSVTTTEPSITSKEPSV 91
++ + TTT PS T+ +
Sbjct: 832 ST--STTTTTSPSQTTTGGGI 850
Score = 29.4 bits (66), Expect = 1.3
Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 27 SITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITS 86
S +K P ++T P+ + I S T T IT+
Sbjct: 712 SSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRI-MDPASGTGTS--ITT 768
Query: 87 KEPSVTTTEPSITSKEP------------SLTTTEPSITSKESSEITTEVSGTTTESCAT 134
S T E + TT IT + TT S + T++ +
Sbjct: 769 SGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSP 828
Query: 135 TEPSTTAS 142
T+ ST+ +
Sbjct: 829 TQTSTSTT 836
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 36.8 bits (85), Expect = 0.005
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 48 FVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTT 107
+ T ++ + TT P+ TS E TT S ++E T T + T+ +
Sbjct: 16 ALLTASNPKLAQAEEIVTTTPA-TSTEAEQTTPVESDATEEADNTETPVAATT---AAEA 71
Query: 108 TEPSITSKESSEITTEVSGTTTESCATTEPSTTAS 142
S T++ S + TT+E+ T +T S
Sbjct: 72 PSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106
Score = 34.4 bits (79), Expect = 0.031
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 64 TTTEPSITSKEPSVTTTEPSITSKEPSVTT----TEPSITSKEPSLTTTEPSITSKESSE 119
T + P + E VTTT + T E + TE + ++ P TT S +
Sbjct: 19 TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETA 78
Query: 120 ITTEVSGTTTESCATTEPSTTASHHEKYSP 149
T++ + T++ + + T + E P
Sbjct: 79 ETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 34.1 bits (78), Expect = 0.044
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 23 TTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEP 82
T ++ + TT P+ TS E TT S ++E T T + T+ + +++E
Sbjct: 19 TASNPKLAQAEEIVTTTPA-TSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSET 77
Query: 83 SITSKEPSVTTTEPSITSKEPSLTTTE 109
+ TS S T + ++ + TE
Sbjct: 78 AETSDPTSEATDTTTSEARTVTPAATE 104
Score = 34.1 bits (78), Expect = 0.051
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 18 QTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSV 77
Q T TS E TT S ++E T T + T+ + +++E + TS S
Sbjct: 27 QAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSE 86
Query: 78 TTTEPSITSKEPSVTTTE 95
T + ++ + TE
Sbjct: 87 ATDTTTSEARTVTPAATE 104
Score = 32.1 bits (73), Expect = 0.17
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 35 VTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTT 94
+ T ++ + TT P+ TS E TT S ++E T T + T+ + +++
Sbjct: 17 LLTASNPKLAQAEEIVTTTPA-TSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSS 75
Query: 95 EPSITSKEPSLTTTEPSITSKESSEITTEVS 125
E + TS S T + ++ + TE S
Sbjct: 76 ETAETSDPTSEATDTTTSEARTVTPAATETS 106
Score = 28.3 bits (63), Expect = 3.0
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 8 DDKKTSDTGDQTYSETTEP--SITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTT 65
++ T+ T +E T P S ++E T T + T+ +++E + TS S T
Sbjct: 29 EEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEAT 88
Query: 66 TEPSITSKEPSVTTTE 81
+ ++ + TE
Sbjct: 89 DTTTSEARTVTPAATE 104
Score = 27.5 bits (61), Expect = 5.4
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 91 VTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCATTEPSTTASHHEKYSP 149
+ T ++ + TT P+ TS E+ + T S T E+ T P + E S
Sbjct: 17 LLTASNPKLAQAEEIVTTTPA-TSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSS 74
Score = 27.5 bits (61), Expect = 6.8
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 62 SVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEIT 121
+V T +T+ P + E +T+ + T E + + TE + ++ T
Sbjct: 10 AVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESD---ATEEADNTETPVAAT 66
Query: 122 TEVSGTTTESCATTEPSTTA 141
T ++ A T T+
Sbjct: 67 TAAEAPSSSETAETSDPTSE 86
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 34.1 bits (78), Expect = 0.046
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 17 DQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPS 76
D+ SE + +TS + V P + SK + T E + K
Sbjct: 213 DKEKSEASSKGLTSTKELV-----------PVQNSGGNHSLSKSSNSQTPELEYSEKG-- 259
Query: 77 VTTTEPSITSKEPSVTTTEPSITSKEPSLTTTE----PSITSKESSEITTEVSGTTTESC 132
S + S+ + L T E S S+ SS T TT+ S
Sbjct: 260 -KDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSS 318
Query: 133 ATTEPSTTASH 143
+ S +
Sbjct: 319 SAAAGSIGSKS 329
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 34.1 bits (78), Expect = 0.048
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 7 NDDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTT 66
+D T + ET P T+ E TTT P+ T E T EP+ T++EP+ TT
Sbjct: 695 DDGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETT 754
Score = 32.2 bits (73), Expect = 0.19
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 13 SDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPS 69
+D GD T E ++ P TT+E T+ P T E + + EP+ TT EP+
Sbjct: 694 ADDGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPT 750
Score = 31.4 bits (71), Expect = 0.38
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 79 TTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGT 127
T P T+ E TTT P+ T E + T EP+ T++E +E TT S T
Sbjct: 711 TERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
Score = 31.0 bits (70), Expect = 0.41
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 51 TTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTT 94
T P T+ E TTT P+ T E + T EP+ T++EP+ TT
Sbjct: 711 TERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETT 754
Score = 31.0 bits (70), Expect = 0.47
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 65 TTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTT 108
T P T+ E TTT P+ T E + T EP+ T++EP+ TT
Sbjct: 711 TERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETT 754
Score = 30.6 bits (69), Expect = 0.53
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 74 EPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEI 120
P TT+E T+ P+ T E + + EP+ TT EP+ + S
Sbjct: 713 RPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
Score = 27.5 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 88 EPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCAT 134
P TT+E T+ P+ T E + + E + T E + TT +T
Sbjct: 713 RPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 33.6 bits (76), Expect = 0.061
Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 6/173 (3%)
Query: 12 TSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSIT 71
S T + TS P+ TT+ P TT + + P+ T P+ T
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 72 SKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTES 131
S T+ P+ TS P V + TS P TT + S ++T E T +
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATS--PPTGTTSV--PNATSPQVTEESPVNNTNT 568
Query: 132 CATTEPSTTASHHEKYSPGQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLV 184
T + + + GQH T T + PR + T++ PL+
Sbjct: 569 PVVTSAPSVLT--SAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLL 619
Score = 32.8 bits (74), Expect = 0.13
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 6/197 (3%)
Query: 13 SDTGDQTYSETTEPSITSKEPSVTTTEPSITS---KEPFVTTTEPSITSKEPSVTTTEPS 69
D T S ++ EP TT P+ S T + TS P+ TT+
Sbjct: 423 HKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTL 482
Query: 70 ITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTT 129
P+ TT + + P+ T P+ TS T+ P+ TS I + T+
Sbjct: 483 PEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSP 542
Query: 130 ESCATTEPSTTASHHEKYSPGQHDTYRHVTFEPCARKVCVTPR---PRRSGTASPPLVPK 186
+ T+ P+ T+ + SP + VT P VT S T+ P +P
Sbjct: 543 PTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPS 602
Query: 187 QIKAIGLDRDERHFRPM 203
+ +
Sbjct: 603 SSHSTPRSNSTSTTPLL 619
Score = 30.9 bits (69), Expect = 0.44
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 1/147 (0%)
Query: 8 DDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTE 67
D + TG + + + S TS+ S T S T T P+ + T
Sbjct: 468 DPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATS 527
Query: 68 PSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGT 127
P+ + T T P + T P +T + P T P +TS S + +G
Sbjct: 528 PTPIVIGVTTTATSPPTGTTSVP-NATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQ 586
Query: 128 TTESCATTEPSTTASHHEKYSPGQHDT 154
+ T +P + T
Sbjct: 587 HGTGSSPTSQQPGIPSSSHSTPRSNST 613
Score = 28.2 bits (62), Expect = 3.2
Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 1/132 (0%)
Query: 12 TSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSIT 71
TS T + T + + P+ T + + P + T+ P TT
Sbjct: 493 TSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVP-N 551
Query: 72 SKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTES 131
+ P VT P + P VT+ +TS + S + + I + T +
Sbjct: 552 ATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSN 611
Query: 132 CATTEPSTTASH 143
+T P T++H
Sbjct: 612 STSTTPLLTSAH 623
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 32.7 bits (74), Expect = 0.11
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 5/148 (3%)
Query: 6 INDDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTT 65
I D D G + ++ + KE + T+ SI S + P + + V+
Sbjct: 187 IEYDTIYEDMGCEIQPSSSN-NEAPKEGNNQTSLSSIRSSKK--QERSPKKKAPQRDVSI 243
Query: 66 TEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVS 125
++ + T P V + SI+S V+T P T K+ S+ ++ + + +
Sbjct: 244 SDRATTPIAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKE 303
Query: 126 GTTTESCATTEPSTTASHHEKYSPGQHD 153
P + K QHD
Sbjct: 304 SENDSEQQLNFPKDSTDEIRKTI--QHD 329
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 31.2 bits (71), Expect = 0.30
Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 2/126 (1%)
Query: 17 DQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPS 76
+++ SE E SV + ++ ++EP +P+ + + S
Sbjct: 80 EESESENEVQIQQEVEQSVDEIKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVAS 139
Query: 77 VTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCATTE 136
+T E S + S L I S S + + ++ +
Sbjct: 140 MTIEETQ--SPNVPIEGINSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAETEAQ 197
Query: 137 PSTTAS 142
P T +
Sbjct: 198 PEATTN 203
Score = 28.9 bits (65), Expect = 1.5
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 6/135 (4%)
Query: 18 QTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSK---EPSVTTTEPSITSKE 74
+ E +P+ + + V TT P + + +E + + E SV + ++ ++E
Sbjct: 50 ISNEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLPNQE 109
Query: 75 PSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCA- 133
P+ +P+ + + S+T E + E S A
Sbjct: 110 PAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQ-SPNVPIEGINSSSEQLRVELAE 168
Query: 134 -TTEPSTTASHHEKY 147
E + ASH +
Sbjct: 169 LAAEIYSDASHRVEL 183
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 31.4 bits (71), Expect = 0.32
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 50 TTTEPSITSKEPSVTTTEPSITSKEPSVTTT-EPSITSKEPSVTTTEPSITSKE------ 102
TE +++ K S K+ E ++++ V+ E ++ SK
Sbjct: 339 GETESTVSLKNGDPVVNPVSTDKKQLEYCCRRELTVSADTIVVSILEEALASKFVFFEVI 398
Query: 103 -PSLTTTEPSITSKESSEITTEVSGTTTESCATTE 136
P T T + S + + SGT SC+ +
Sbjct: 399 KPLPTETGSDSWVEASFPVGHKYSGTEQPSCSAPK 433
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.4 bits (66), Expect = 1.6
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 26 PSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSIT 85
P + + + SI S+ ++PS K P+ TTT + T+ TTT T
Sbjct: 220 PFVNLEVNESDIEQISINSENIQRINSQPS---KRPNNTTTTTTTTT-----TTTFQPRT 271
Query: 86 SKEPSVTTTEPSITS-KEPSLTTTEPSI-TSKESSEITTEVSGTTTE 130
K S+ + S+ E T+P + S+ + SG+ +
Sbjct: 272 RKRKSIDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSLKD 318
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 28.7 bits (64), Expect = 2.2
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 13 SDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITS 72
S++G T + S S+ V PS S P P + S SV+ P I +
Sbjct: 646 SESGVSTGVSVADESNDSENELVNCASPSSLSIVP--VEVSPVLKSPTLSVS---PRIRN 700
Query: 73 KEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESC 132
S+ T+ S++ S ++ + EPS + + +S S ++ TE
Sbjct: 701 SRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKSKSFLAPTEHL 760
Query: 133 ATT 135
A +
Sbjct: 761 AAS 763
Score = 27.6 bits (61), Expect = 5.7
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 18/147 (12%)
Query: 11 KTSDTGDQTYSETTEPSITSKEP------SVTTTEPSITSKEPFVTTTEPSITSKEPSVT 64
K + + PS V+ + S S+ V PS S P
Sbjct: 624 KLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESNDSENELVNCASPSSLSIVPVEV 683
Query: 65 TTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKE-------PSLTTTEPSITSKES 117
+ P + S SV+ P I + S+ T+ S++ + EPS
Sbjct: 684 S--PVLKSPTLSVS---PRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMK 738
Query: 118 SEITTEVSGTTTESCATTEPSTTASHH 144
+ ++ +S ++S AS H
Sbjct: 739 NNSSSALSTQKSKSFLAPTEHLAASLH 765
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 28.5 bits (63), Expect = 2.6
Identities = 13/107 (12%), Positives = 40/107 (37%)
Query: 32 EPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSV 91
+P+ + + + +P V T + + + T + +P+ + + + +P+V
Sbjct: 41 DPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAV 100
Query: 92 TTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCATTEPS 138
+ + + T + + ++ T + + A T+ S
Sbjct: 101 APQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHS 147
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.5 bits (64), Expect = 2.9
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 5/120 (4%)
Query: 3 QLIINDDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPS 62
+ +D D S T+ S K+ P + V E TS
Sbjct: 48 DYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAE 107
Query: 63 VTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITT 122
TT + E + + T ++P + SI +
Sbjct: 108 ATTPKSIQELVEA-----LEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLE 162
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 28.3 bits (64), Expect = 3.6
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 21 SETTEPSITSKEPSVTTTEPSITSKEPFVTTTEP------SITSKEPSVTTT--EPSITS 72
+ P P + P P TT + + + EP+ S
Sbjct: 388 TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447
Query: 73 KEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESC 132
+ V + + S P+ + E + KE + K+ T + E
Sbjct: 448 RARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE 507
Query: 133 ATTEPST 139
T E +
Sbjct: 508 KTPELAA 514
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 27.8 bits (62), Expect = 3.9
Identities = 13/97 (13%), Positives = 20/97 (20%), Gaps = 8/97 (8%)
Query: 18 QTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSIT----SKEPSVTTTEPSITSK 73
Q S + + ++T T + SK+ S + K
Sbjct: 22 QPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
Query: 74 EPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEP 110
EP K P E
Sbjct: 82 EPKSEGETKLGFKT----PKKSKKTKKKPPKPKPNED 114
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 27.7 bits (61), Expect = 4.3
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 12 TSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSIT 71
++ TG S TT +S PS T PS TS + P+ SK S +T+ P+
Sbjct: 571 STPTGSAASSNTTF---SSDSPS-TVVAPS-TSPPAGHLGSPPATPSKIVSPSTSPPASH 625
Query: 72 SKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSIT 113
PS T + P + K S T P + K + +TE S++
Sbjct: 626 LGSPSTTPSSPESSIKVASTETASPESSIK---VASTESSVS 664
Score = 27.7 bits (61), Expect = 5.2
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 26 PSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSIT 85
P + + P T + P+ ++ T + S T PS TS + P+
Sbjct: 559 PGLFAGNPGSTNSTPTGSAASSNTTFSSDS------PSTVVAPS-TSPPAGHLGSPPATP 611
Query: 86 SKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITT----EVSGTTTESCATTEPSTT 140
SK S +T+ P+ PS T + P + K +S T + +TES + +T
Sbjct: 612 SKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVSMVSMST 670
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 27.8 bits (61), Expect = 4.4
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 48 FVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTT 107
F+T+ PS +S + T ++ P+ +++ S +S SV P++ EP
Sbjct: 10 FLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSV----PTLIRNEPVFAA 65
Query: 108 TEPSITSKESSEITTEVSGTTTES 131
P I S E+ TE E+
Sbjct: 66 PAPIIAPYWSEEMGTEAYDEAIEA 89
>gnl|CDD|219971 pfam08690, GET2, GET complex subunit GET2. This family
corresponds to the GET complex subunit GET2. The GET
complex is involved in the retrieval of ER resident
proteins from the Golgi.
Length = 298
Score = 27.4 bits (61), Expect = 4.7
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 28 ITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSK 87
IT + SV S+ +P E + S + + P I ++ + S
Sbjct: 31 ITGQGSSVKLVSKSVLDAKP-----EDNTGSTTSAHDQSTPEIQDILEAIDPPKDESESP 85
Query: 88 EPSV 91
++
Sbjct: 86 AENI 89
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 56 ITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSK 115
IT + SV S+ +P T S + + P I ++ + S
Sbjct: 31 ITGQGSSVKLVSKSVLDAKPEDNT-----GSTTSAHDQSTPEIQDILEAIDPPKDESESP 85
Query: 116 ESSE 119
+
Sbjct: 86 AENI 89
>gnl|CDD|179188 PRK00967, PRK00967, hypothetical protein; Provisional.
Length = 105
Score = 26.5 bits (59), Expect = 5.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 106 TTTEPSITSKESSEITTEVSGTTTES 131
TTTE +I KE E+ EV G TT+S
Sbjct: 4 TTTE-NIPGKEIIEVIGEVFGLTTQS 28
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 12 TSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSIT 71
+ T + + P+ + T T+ P V + ++ + PS + + T
Sbjct: 165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA--PSQANVDTAAT 222
Query: 72 SKEPSVTTTEPSITSKEPSVTTTEPSI 98
+ T + + + P+
Sbjct: 223 PAPAAPATPDGAAPLPTDQAGVSTPAA 249
Score = 26.9 bits (60), Expect = 7.5
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 29 TSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKE 88
T+ +P+ T + P + T T+ P+V + ++ + PS + + T
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA--PSQANVDTAATPAP 225
Query: 89 PSVTTTEPSITSKEPSLTTTEPSI 112
+ T + + + P+
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAA 249
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 27.0 bits (60), Expect = 7.0
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 6 INDDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKE---PFVTTTEPSITSKEPS 62
+D+ T T + T S + + T + + TS TTT PS T E +
Sbjct: 63 SDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEA 122
Query: 63 VTTTEPSITSKEPSVTTTEPS 83
TT ++ S T+PS
Sbjct: 123 TTTVSTETPTEGGSSAATDPS 143
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 27.1 bits (60), Expect = 7.2
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 41 SITSKEPFVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSVTTTEPSITS 100
S+ S F T P + SV + + + TS + T+ + +KE + + S +
Sbjct: 186 SLISSLGFNT---PVGEKDQGSVNSGQNNGTSSVRTGTSHPLLMINKESLPMSLKLSKSC 242
Query: 101 KEPSLTTTEPSITSKES----SEITTEVSGTTTESCATTEPSTTASH 143
E S ++ + S S E S ++T SC T S+ S
Sbjct: 243 LETSESSPSLPVRSLTPNLLKSRKRPEASTSSTHSCMTNSLSSCESE 289
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 26.8 bits (59), Expect = 7.8
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 10 KKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTTEPS 69
KKT++ + T T+K T + +K+ S+ + VT
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT---VK 66
Query: 70 ITSKEPSVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPS 111
E + T K+ +V+ ++K T+ P
Sbjct: 67 FEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPK 108
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 26.9 bits (59), Expect = 7.8
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 76 SVTTTEPSITSKEPSVTTTEPSITSKEPSLTTTEPSITSKESSEITTEVSGTTTESCATT 135
+ +TT SI S +T P+ + SI S + I TE+ + + S +
Sbjct: 3 NSSTTLSSIIL---SSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSN 59
Query: 136 EPSTTASHHEKYSPGQHDTYRHVTFE 161
S+++S + ++ ++T+E
Sbjct: 60 SSSSSSSSSSSITY-DYEYENNITYE 84
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 27.1 bits (60), Expect = 8.2
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 5/109 (4%)
Query: 7 NDDKKTSDTGDQTYSETTEPSITSKEPSVTTTEPSITSKEPFVTTTEPSITSKEPSVTTT 66
D K S D+ E + + E + +P S+ + S E S ++
Sbjct: 21 GDASKDSTEDDEDILEFLD-ELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASS 79
Query: 67 EPSITSKEPSVTTTEPSITSKEPSVT-TTEPSITSKEPSLTTTEPSITS 114
E + E + +S S +TE + SI
Sbjct: 80 E---EKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGG 125
>gnl|CDD|212569 cd11696, DHR2_DOCK_B, Dock Homology Region 2, a GEF domain, of
Class B Dedicator of Cytokinesis proteins. DOCK
proteins are atypical guanine nucleotide exchange
factors (GEFs) that lack the conventional Dbl homology
(DH) domain. As GEFs, they activate small GTPases by
exchanging bound GDP for free GTP. They are divided into
four classes (A-D) based on sequence similarity and
domain architecture; class B includes Dock3 and 4. Dock3
is a specific GEF for Rac and it regulates N-cadherin
dependent cell-cell adhesion, cell polarity, and
neuronal morphology. It promotes axonal growth by
stimulating actin polymerization and microtubule
assembly. Dock4 activates the Ras family GTPase Rap1,
probably indirectly through interaction with Rap
regulatory proteins. It plays a role in regulating
dendritic growth and branching in hippocampal neurons,
where it is highly expressed. All DOCKs contain two
homology domains: the DHR-1 (Dock homology region-1),
also called CZH1 (CED-5, Dock180, and MBC-zizimin
homology 1), and DHR-2 (also called CZH2 or Docker). The
DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of class B DOCKs,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class B DOCKs also contain an SH3 domain at the
N-terminal region and a PxxP motif at the C-terminus.
Length = 391
Score = 27.0 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 169 VTPRPRRSGTASPPLVPKQIKAIGLDRDERHF---RPMH 204
V P P R VP ++++ D R F RP+H
Sbjct: 189 VKPVPERRPVLQMVGVPDKVRSFYRVNDVRKFQYDRPIH 227
>gnl|CDD|224264 COG1345, FliD, Flagellar capping protein [Cell motility and
secretion].
Length = 483
Score = 27.0 bits (60), Expect = 9.2
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 41 SITSKEPFVTTTEPSITSKEPSVTTTEPSITSKE-PSVTTTEPSITSKEPSVTTTEPSI- 98
S+ F++ T S +S S ++T ++ ++ T+ + + S T+ +
Sbjct: 65 SLALASTFLSKTASSSSSDILSASSTSSAVAGSYSDGISVTQLATAATLASKAITDTTTE 124
Query: 99 -------TSKEPSLTTTEPSITSKESSEITTEVSGTT 128
TS + T K+ EI+ S +T
Sbjct: 125 AIGSGASTSDSGQILLTITQTGKKKPVEISLVDSNST 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.301 0.117 0.320
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,929,650
Number of extensions: 711255
Number of successful extensions: 1418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 261
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 57 (25.9 bits)