RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12975
         (205 letters)



>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559
           {Mesorhizobium loti [TaxId: 381]}
          Length = 209

 Score = 29.5 bits (65), Expect = 0.22
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 182 PLVPKQIKAIGLDRD 196
            + P  + A+ LDRD
Sbjct: 17  RVFPPHLPALFLDRD 31


>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
           x100 [TaxId: 105351]}
          Length = 472

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 109 EPSITSKESSEITTEVSGTTTESCATTEPSTTAS 142
           E S +S   +   T  SGT +    T+ PS  A+
Sbjct: 438 ETSASSVPGTCAATSASGTYSSVTVTSWPSIVAT 471


>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus
           thermophilus [TaxId: 274]}
          Length = 70

 Score = 23.5 bits (51), Expect = 6.3
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 150 GQHDTYRHVTFEPCARKVCVTPRPRRSGTASPPLVPKQIKAIGLDRDE 197
           G H  Y H    P  R V V   P  SG        + ++  GL  +E
Sbjct: 26  GGHRLYTH----PDGRIVVV---PFHSGELPKGTFKRILRDAGLTEEE 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.301    0.117    0.320 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,773
Number of extensions: 23735
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.1 bits)