Query psy12976
Match_columns 87
No_of_seqs 85 out of 103
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 15:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecj_A Tripartite motif-contai 64.1 4.7 0.00016 21.6 2.2 27 42-68 9-45 (58)
2 1t1h_A Gspef-atpub14, armadill 54.8 9.5 0.00033 21.8 2.5 29 41-69 1-39 (78)
3 2ct2_A Tripartite motif protei 44.8 14 0.00049 21.2 2.2 33 37-69 4-50 (88)
4 2ecw_A Tripartite motif-contai 37.2 24 0.00083 19.8 2.4 28 42-69 13-50 (85)
5 2djb_A Polycomb group ring fin 37.0 26 0.00089 19.8 2.5 28 42-69 9-47 (72)
6 2yur_A Retinoblastoma-binding 34.3 30 0.001 19.8 2.4 30 40-69 7-47 (74)
7 2d8t_A Dactylidin, ring finger 29.5 38 0.0013 19.0 2.3 23 45-67 12-44 (71)
8 2ecv_A Tripartite motif-contai 29.3 77 0.0026 17.6 3.7 28 43-70 14-51 (85)
9 2ecy_A TNF receptor-associated 27.8 43 0.0015 18.4 2.3 26 44-69 11-46 (66)
10 2egp_A Tripartite motif-contai 26.2 30 0.001 19.4 1.5 24 43-66 7-40 (79)
11 2ysj_A Tripartite motif-contai 23.7 92 0.0032 16.8 3.2 28 42-69 14-51 (63)
12 2ysl_A Tripartite motif-contai 23.2 61 0.0021 17.9 2.4 25 43-67 15-49 (73)
13 3m4w_E Sigma-E factor negative 22.5 31 0.001 23.0 1.1 19 68-86 45-64 (96)
14 2csy_A Zinc finger protein 183 22.2 87 0.003 17.8 3.0 27 43-69 10-46 (81)
15 2yu4_A E3 SUMO-protein ligase 22.1 83 0.0028 18.9 3.0 29 42-71 2-41 (94)
No 1
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.11 E-value=4.7 Score=21.65 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.5
Q ss_pred CCcccCccceecccccccc----------chhHHHHH
Q psy12976 42 KDSVKDFDCCCLTLQHSSY----------LNQVLIFD 68 (87)
Q Consensus 42 kDS~k~Fd~C~LcLqpard----------~~ec~~~~ 68 (87)
.+.+.+...|.+|+...++ |.+|+..-
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRW 45 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHH
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHH
Confidence 4556677889999998777 67888643
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.80 E-value=9.5 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCCcccCccceecccccccc----------chhHHHHHH
Q psy12976 41 GKDSVKDFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 41 gkDS~k~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
|.+.+.+.-.|.+|+..-.| |+.|+..-|
T Consensus 1 g~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp CCCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH
T ss_pred CCcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH
Confidence 45667778889999998877 788886544
No 3
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.83 E-value=14 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=24.0
Q ss_pred ceeeCCCcccCccceecccccccc--------------chhHHHHHH
Q psy12976 37 NQRVGKDSVKDFDCCCLTLQHSSY--------------LNQVLIFDL 69 (87)
Q Consensus 37 ~~RLgkDS~k~Fd~C~LcLqpard--------------~~ec~~~~l 69 (87)
...+..+.+.+...|.+|+.+-.+ |.+|+..=+
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 4 GSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCCCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHH
Confidence 345566778888899999987654 678876433
No 4
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.21 E-value=24 Score=19.84 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=20.5
Q ss_pred CCcccCccceecccccccc----------chhHHHHHH
Q psy12976 42 KDSVKDFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 42 kDS~k~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
.+.+.+-..|.+|+.+-.+ |.+|+..-+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNY 50 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHH
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHH
Confidence 3445666789999998777 789986443
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.98 E-value=26 Score=19.81 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=20.7
Q ss_pred CCcccCccceecccccccc-----------chhHHHHHH
Q psy12976 42 KDSVKDFDCCCLTLQHSSY-----------LNQVLIFDL 69 (87)
Q Consensus 42 kDS~k~Fd~C~LcLqpard-----------~~ec~~~~l 69 (87)
-+.+.+-..|.+|+..-.+ |.+|+..-|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH
Confidence 3556677789999988766 678986554
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=34.31 E-value=30 Score=19.79 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=21.7
Q ss_pred eCCCcccCccceecccccccc-----------chhHHHHHH
Q psy12976 40 VGKDSVKDFDCCCLTLQHSSY-----------LNQVLIFDL 69 (87)
Q Consensus 40 LgkDS~k~Fd~C~LcLqpard-----------~~ec~~~~l 69 (87)
...+.+.+-..|.+|+..-.+ |.+||..-|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHH
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHH
Confidence 344556667789999998777 679986544
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=38 Score=19.03 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=16.9
Q ss_pred ccCccceecccccccc----------chhHHHH
Q psy12976 45 VKDFDCCCLTLQHSSY----------LNQVLIF 67 (87)
Q Consensus 45 ~k~Fd~C~LcLqpard----------~~ec~~~ 67 (87)
..+-..|.+|+...++ |.+|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKG 44 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHH
Confidence 3445679999998777 6788753
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.30 E-value=77 Score=17.63 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.0
Q ss_pred CcccCccceecccccccc----------chhHHHHHHH
Q psy12976 43 DSVKDFDCCCLTLQHSSY----------LNQVLIFDLL 70 (87)
Q Consensus 43 DS~k~Fd~C~LcLqpard----------~~ec~~~~ll 70 (87)
+.+.+...|.+|+.+..+ |.+|+..-+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHH
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHH
Confidence 455667789999998777 7899875443
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.82 E-value=43 Score=18.44 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=18.6
Q ss_pred cccCccceecccccccc----------chhHHHHHH
Q psy12976 44 SVKDFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 44 S~k~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
.+.+-..|.+|+.+.++ |.+|+..-+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALL 46 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHH
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHH
Confidence 34555679999998777 788976543
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=26.22 E-value=30 Score=19.44 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.4
Q ss_pred CcccCccceecccccccc----------chhHHH
Q psy12976 43 DSVKDFDCCCLTLQHSSY----------LNQVLI 66 (87)
Q Consensus 43 DS~k~Fd~C~LcLqpard----------~~ec~~ 66 (87)
+.+.+...|.+|+..-.+ |.+|+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~ 40 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACIT 40 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHH
Confidence 345566779999988777 677864
No 11
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.74 E-value=92 Score=16.77 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=20.8
Q ss_pred CCcccCccceecccccccc----------chhHHHHHH
Q psy12976 42 KDSVKDFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 42 kDS~k~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
.+.+.+...|.+|+....+ |.+|+..-+
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHH
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHH
Confidence 3456667789999998777 789986543
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.19 E-value=61 Score=17.86 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=18.9
Q ss_pred CcccCccceecccccccc----------chhHHHH
Q psy12976 43 DSVKDFDCCCLTLQHSSY----------LNQVLIF 67 (87)
Q Consensus 43 DS~k~Fd~C~LcLqpard----------~~ec~~~ 67 (87)
+.+.+...|.+|+....+ |.+|+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~ 49 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQ 49 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHH
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHH
Confidence 445666789999998777 6788754
No 13
>3m4w_E Sigma-E factor negative regulatory protein; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli}
Probab=22.47 E-value=31 Score=22.98 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=13.0
Q ss_pred HHHHHHHHhH-HHHhhhhhc
Q psy12976 68 DLLILKHRIN-LINQFQSQT 86 (87)
Q Consensus 68 ~ll~qk~~i~-~~~~~~~~~ 86 (87)
.+..|++||+ .|..||.|.
T Consensus 45 qv~eQrrRInAmLQdyeLQr 64 (96)
T 3m4w_E 45 QVQEQRRRINAMLQDYELQR 64 (96)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4778999999 888898873
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.17 E-value=87 Score=17.83 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=19.2
Q ss_pred CcccCccceecccccccc----------chhHHHHHH
Q psy12976 43 DSVKDFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 43 DS~k~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
|.......|.+|+.+-.+ |.+|+..-+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF 46 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH
Confidence 334445579999998777 678986544
No 15
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.14 E-value=83 Score=18.94 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=19.5
Q ss_pred CCcccCccceecccccccc-----------chhHHHHHHHH
Q psy12976 42 KDSVKDFDCCCLTLQHSSY-----------LNQVLIFDLLI 71 (87)
Q Consensus 42 kDS~k~Fd~C~LcLqpard-----------~~ec~~~~ll~ 71 (87)
.++...| .|.+|+.+-+| |+.||..=|..
T Consensus 2 ~~~~~~~-~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 2 SSGSSGF-TCPITKEEMKKPVKNKVCGHTYEEDAIVRMIES 41 (94)
T ss_dssp CSCSSCC-BCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHH
T ss_pred CCCCcEe-ECcCcCchhcCCEEcCCCCCeecHHHHHHHHHH
Confidence 3444445 48899988777 67887765543
Done!