Query psy12976
Match_columns 87
No_of_seqs 85 out of 103
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 15:58:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12976.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12976hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2baya1 g.44.1.2 (A:1-56) Pre- 28.2 12 0.00091 19.7 1.5 20 51-70 3-33 (56)
2 d1rmda2 g.44.1.1 (A:1-86) V(D) 23.4 13 0.00091 21.9 0.9 31 39-69 11-54 (86)
3 d1fbva4 g.44.1.1 (A:356-434) C 22.6 25 0.0018 19.7 2.1 23 47-69 22-54 (79)
4 d2ds5a1 g.39.1.11 (A:11-48) Cl 22.2 14 0.001 19.4 0.9 17 50-66 3-31 (38)
5 d1jm7a_ g.44.1.1 (A:) brca1 RI 19.5 23 0.0016 20.4 1.5 18 50-67 23-50 (103)
6 d1g1pa_ g.3.6.1 (A:) Conotoxin 19.4 19 0.0014 18.5 1.0 13 43-55 2-14 (32)
7 d1wima_ g.44.1.1 (A:) UbcM4-in 19.3 43 0.0032 18.5 2.8 26 49-74 6-44 (94)
8 d1pzwa_ g.39.1.10 (A:) Transcr 14.2 24 0.0017 18.9 0.6 10 49-58 1-10 (80)
9 d1jm7b_ g.44.1.1 (B:) bard1 RI 10.8 28 0.002 19.7 0.2 13 48-60 22-34 (97)
10 d1chca_ g.44.1.1 (A:) Immediat 10.1 65 0.0047 17.0 1.6 22 48-69 5-37 (68)
No 1
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.21 E-value=12 Score=19.69 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=15.7
Q ss_pred eecccccccc-----------chhHHHHHHH
Q psy12976 51 CCLTLQHSSY-----------LNQVLIFDLL 70 (87)
Q Consensus 51 C~LcLqpard-----------~~ec~~~~ll 70 (87)
|.+|+++-+| |++||..=|.
T Consensus 3 C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~ 33 (56)
T d2baya1 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVK 33 (56)
T ss_dssp CTTTCSCCSSEEEETTTTEEEEHHHHHHHHH
T ss_pred CccCCchHHhcCccCCCCCcccHHHHHHHHh
Confidence 8899998888 6899876553
No 2
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.42 E-value=13 Score=21.86 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=22.8
Q ss_pred eeCCCcccCcc---ceecccccccc----------chhHHHHHH
Q psy12976 39 RVGKDSVKDFD---CCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 39 RLgkDS~k~Fd---~C~LcLqpard----------~~ec~~~~l 69 (87)
++..|-..+|. .|.+|+.+..+ |.+|+..-+
T Consensus 11 ~l~~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~ 54 (86)
T d1rmda2 11 LLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCL 54 (86)
T ss_dssp GBSSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH
T ss_pred cccccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHH
Confidence 45555555553 79999999998 789987654
No 3
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.65 E-value=25 Score=19.66 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=17.8
Q ss_pred Cccceecccccccc----------chhHHHHHH
Q psy12976 47 DFDCCCLTLQHSSY----------LNQVLIFDL 69 (87)
Q Consensus 47 ~Fd~C~LcLqpard----------~~ec~~~~l 69 (87)
.+.-|.+|+....+ |.+|+..=|
T Consensus 22 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl 54 (79)
T d1fbva4 22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ 54 (79)
T ss_dssp CTTBCTTTSSSBCCEECSSSCCEECHHHHHHHH
T ss_pred CCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHH
Confidence 45569999999888 789976543
No 4
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=22.17 E-value=14 Score=19.40 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=11.7
Q ss_pred ceecccccccc------------chhHHH
Q psy12976 50 CCCLTLQHSSY------------LNQVLI 66 (87)
Q Consensus 50 ~C~LcLqpard------------~~ec~~ 66 (87)
.|+.|-.|-.+ |+||+-
T Consensus 3 ~CSFCgk~~~eV~~LI~G~~~~ICd~CV~ 31 (38)
T d2ds5a1 3 YCSFCGKSQHEVRKLIAGPSVYICDECVD 31 (38)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred EeeCCCCCHHHHHHHhcCCCCEEcHHHHH
Confidence 36667666555 899974
No 5
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.55 E-value=23 Score=20.39 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=14.5
Q ss_pred ceecccccccc----------chhHHHH
Q psy12976 50 CCCLTLQHSSY----------LNQVLIF 67 (87)
Q Consensus 50 ~C~LcLqpard----------~~ec~~~ 67 (87)
.|.+|+.+..+ |+.|+..
T Consensus 23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~ 50 (103)
T d1jm7a_ 23 ECPICLELIKEPVSTKCDHIFCKFCMLK 50 (103)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHH
T ss_pred CCCccCchhCCeEEcCCCCchhhHHHHH
Confidence 48999988877 7899754
No 6
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=19.41 E-value=19 Score=18.48 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=10.2
Q ss_pred CcccCccceeccc
Q psy12976 43 DSVKDFDCCCLTL 55 (87)
Q Consensus 43 DS~k~Fd~C~LcL 55 (87)
|-++|++-|+|=+
T Consensus 2 dcikpygfcslpi 14 (32)
T d1g1pa_ 2 DCIKPYGFCSLPI 14 (32)
T ss_dssp CCBCTTSBCCCSS
T ss_pred Cccccccceechh
Confidence 6789999998743
No 7
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.34 E-value=43 Score=18.48 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=17.3
Q ss_pred cceecccccccc-------------chhHHHHHHHHHHH
Q psy12976 49 DCCCLTLQHSSY-------------LNQVLIFDLLILKH 74 (87)
Q Consensus 49 d~C~LcLqpard-------------~~ec~~~~ll~qk~ 74 (87)
..|.+|+..... |++|+-.-+..+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~ 44 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK 44 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHh
Confidence 467888775422 78898777766543
No 8
>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa, zinc finger associated domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.19 E-value=24 Score=18.91 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=7.0
Q ss_pred cceecccccc
Q psy12976 49 DCCCLTLQHS 58 (87)
Q Consensus 49 d~C~LcLqpa 58 (87)
|-|+|||.+.
T Consensus 1 diCRlCl~~~ 10 (80)
T d1pzwa_ 1 DICRLCLRGV 10 (80)
T ss_dssp CBCTTTCCBC
T ss_pred CccccCCCcC
Confidence 4588888654
No 9
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.81 E-value=28 Score=19.72 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=8.4
Q ss_pred ccceecccccccc
Q psy12976 48 FDCCCLTLQHSSY 60 (87)
Q Consensus 48 Fd~C~LcLqpard 60 (87)
.-.|.+|++.-.+
T Consensus 22 ~l~C~IC~~~~~~ 34 (97)
T d1jm7b_ 22 LLRCSRCTNILRE 34 (97)
T ss_dssp TTSCSSSCSCCSS
T ss_pred cCCCccCCchhhc
Confidence 3357777776666
No 10
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=10.09 E-value=65 Score=17.04 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=15.4
Q ss_pred ccceecccccccc-----------chhHHHHHH
Q psy12976 48 FDCCCLTLQHSSY-----------LNQVLIFDL 69 (87)
Q Consensus 48 Fd~C~LcLqpard-----------~~ec~~~~l 69 (87)
-|.|.+||.+-.+ |..|+..-|
T Consensus 5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~ 37 (68)
T d1chca_ 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH
T ss_pred CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHH
Confidence 3679999887655 678876543
Done!