RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12976
(87 letters)
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains,
homodimer, riken structural genomics/proteomics
initiative, RSGI; HET: MSE; 1.80A {Thermus
thermophilus} SCOP: c.87.1.3
Length = 376
Score = 27.9 bits (63), Expect = 0.31
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 46 KDFDCC-CLTLQHSSYLNQVL-IFDL 69
LT QH L Q L +F +
Sbjct: 32 PGLKPLVLLTGQHREQLRQALSLFGI 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 0.90
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 17/57 (29%)
Query: 42 KDSVKDFDC--------CCLT-------LQHSSYLNQV-LIFDLLILKHRINLINQF 82
V +FDC L+ + ++ +F L+ K ++ +F
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKF 82
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 25.5 bits (56), Expect = 2.8
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 48 FDCCCLTLQHSSYLNQVLIFDLLILKH 74
FDC + ++ + L D + LKH
Sbjct: 309 FDCSAMWVKRRTDLTGAFKLDPVYLKH 335
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 25.5 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 48 FDCCCLTLQHSSYLNQVLIFDLLILKH 74
FDC + L+ S++ D L LKH
Sbjct: 308 FDCSAMWLKDPSWVVNAFNVDPLYLKH 334
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 48 FDCCCLTLQHSSYLNQVLIFDLLILKH 74
FDC ++ L Q + + L+H
Sbjct: 315 FDCTGFWVKDKYKLQQTFSVNPIYLRH 341
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics,
isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP:
c.87.1.3 PDB: 1f6d_A*
Length = 384
Score = 24.8 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 46 KDFDCC-CLTLQHSSYLNQVL-IFDL 69
F+ C+T QH L+QVL +F +
Sbjct: 27 PFFEAKVCVTAQHREMLDQVLKLFSI 52
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 24.7 bits (53), Expect = 4.1
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 8 RVQSLKRSRCAVYTYEKKKDAEASGYGTQNQRVGKDSVKDFDC 50
R++ ++ C ++ + +AE + NQ + S K++D
Sbjct: 172 RIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDD 214
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 24.8 bits (55), Expect = 4.2
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 1 MSFKLTTRVQSLKRSRCAVY-TYEKKKDAE 29
M F +T+V + +V E K
Sbjct: 231 MKFMTSTKVVGGTNNGDSVSLEVEGKNGKR 260
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 24.8 bits (55), Expect = 4.2
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 1 MSFKLTTRVQSLKRSRCAV-YTYEKKKDAE 29
++ T+V+S+ V T K A+
Sbjct: 227 VTILTATKVESIADGGSQVTVTVTKDGVAQ 256
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center
for structural genomics of infec diseases, csgid, alpha
beta; HET: PGE; 2.20A {Listeria monocytogenes}
Length = 403
Score = 24.8 bits (55), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 52 CLTLQHSSYLNQVL-IFDL 69
+T QH L+QVL IFD+
Sbjct: 62 VITAQHREMLDQVLEIFDI 80
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric,
regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus
anthracis} PDB: 1o6c_A
Length = 375
Score = 24.8 bits (55), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 52 CLTLQHSSYLNQVL-IFDL 69
+T QH L+QVL IF +
Sbjct: 43 TVTAQHRQMLDQVLSIFGI 61
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in
diseases, isomerase, center for structural genomics of
INFE diseases, csgid; 2.35A {Vibrio cholerae}
Length = 396
Score = 24.8 bits (55), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 46 KDFDCC-CLTLQHSSYLNQVL-IFDL 69
F C+T QH L+QVL +F +
Sbjct: 52 NRFVAKVCVTGQHREMLDQVLELFSI 77
>1iba_A Glucose permease; phosphotransferase system, sugar transport,
transferase, phosphorylation, transmembrane, inner
membrane, phoshphotransferase; NMR {Escherichia coli}
SCOP: d.95.1.1
Length = 101
Score = 23.5 bits (51), Expect = 9.6
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 24 KKKDAEASGYGTQNQRV-----GKDSVKDFDCC 51
K +DA+A+G + GK+++ + D C
Sbjct: 3 KNEDAKATGTSEMAPALVAAFGGKENITNLDAC 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.383
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,133,885
Number of extensions: 50393
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 13
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)