BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12977
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52
PE=2 SV=1
Length = 596
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 134/178 (75%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR++ A APTGSGKT AF IPI+ L+ P N GFRA+I+ PTRELA Q + E V+LSEG
Sbjct: 200 GRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQIHRELVKLSEGT 259
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G R H+I K AA+KFGP+S++KFD+L+TTPN+L+YLL+ DPP ++L +VEWL+VDESD
Sbjct: 260 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESD 319
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE G GFRDQLA I+ AC+ +KR MFSAT DV +WCR L + ++VG R
Sbjct: 320 KLFEDGKTGFRDQLASIFLACTSHKVKRAMFSATFAYDVEQWCRLNLDSVITVSVGAR 377
>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52
PE=2 SV=2
Length = 598
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 135/178 (75%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR++ A APTGSGKT AF IPI+ L+ P N GFRA+++ PTRELA Q + E +++SEG
Sbjct: 203 GRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGT 262
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G R H+I K AA+KFGP+S++KFD+L+TTPN+L+YLL+ DPP ++L NVEWL+VDESD
Sbjct: 263 GFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESD 322
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE G GFR+QLA I+ AC+ P ++R MFSAT DV +WC+ L V +++G R
Sbjct: 323 KLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGAR 380
>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52
PE=1 SV=3
Length = 599
Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 135/178 (75%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR++ A APTGSGKT AF IPI+ L+ P N GFRA+I+ PTRELA Q + E +++SEG
Sbjct: 202 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 261
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G R H+I K AA+KFGP+S++KFD+L+TTPN+L+YLL+ DPP ++LA+VEWL+VDESD
Sbjct: 262 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 321
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE G GFRDQLA I+ AC+ ++R MFSAT DV +WC+ L + +++G R
Sbjct: 322 KLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 379
>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus
GN=Ddx52 PE=2 SV=1
Length = 598
Score = 227 bits (578), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 135/178 (75%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR++ A APTGSGKT AF IPI+ L+ P N GFRA+++ PTRELA Q + E +++SEG
Sbjct: 203 GRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGT 262
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G R H+I K AA+KFGP+S++KFD+L+TTPN+L+YLL+ +PP ++L +VEWL+VDESD
Sbjct: 263 GFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESD 322
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE G GFRDQLA I+ AC+ P ++R MFSAT DV +WC+ L V +++G R
Sbjct: 323 KLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIGAR 380
>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium
discoideum GN=ddx52 PE=3 SV=1
Length = 668
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 110/178 (61%), Gaps = 12/178 (6%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109
R++ A APTGSGKTA+F IPI+ +L PK GFR+VI+ PTRELA+Q Y LS+G
Sbjct: 237 REVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQIYRNFRLLSKGKP 296
Query: 110 LRAHVIGK---IQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
R V+ K Q E + +D+LITTP +LVYL++ + L+L VE+L+ DE
Sbjct: 297 FRICVLSKNLHNQSTNENL----IKNYDILITTPLRLVYLIKEN--LLSLNKVEYLVFDE 350
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
+DKLF+ + F++Q+ ++ AC P LK +FSAT + V + +K ++I +G
Sbjct: 351 ADKLFD---KNFQEQVDIVVTACQNPKLKICLFSATMNQQVEELGHSIMKNPIKIIIG 405
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp.
japonica GN=Os07g0647900 PE=2 SV=2
Length = 540
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR+ FACAPTGSGKT AFL PI+ ++ G +AVI+CPTRELA QT E +L++G
Sbjct: 183 GRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAKG- 241
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
R I + + K G D+LI+TP +L + +Q L+L+ VE+L++DESD
Sbjct: 242 --RKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRD--LDLSRVEYLVLDESD 297
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
KLFE GF + + + ACS P++ R +FSAT + + R + V++ VG
Sbjct: 298 KLFEL---GFVEVIDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVG 350
>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=ROK1 PE=3 SV=1
Length = 565
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 123/207 (59%), Gaps = 16/207 (7%)
Query: 7 IALGIFTIGFVISIIVTTLAVVSNSIFKHF-EPHFTITYLSPL---GRQIFACAPTGSGK 62
I L I + +IS +++N I HF EP PL GR + ACAPTGSGK
Sbjct: 115 IPLPIGSFEDLISRFSLDKRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGK 174
Query: 63 TAAFLIPIIHSLRGPKNL-GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQA 121
T AFLIP++ + KN G + +I+ PT+ELA Q +NE V+LS+ + L ++
Sbjct: 175 TLAFLIPLLQQIIEEKNFSGVKGLIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAIL 234
Query: 122 AEKFGPR------SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175
++ G + S +K+D++I+TP +L+ +++ + AL+L+NV+ LI DE+DKLF+
Sbjct: 235 SKSLGAKLRNKVISDKKYDLIISTPLRLIDVVKNE--ALDLSNVKHLIFDEADKLFD--- 289
Query: 176 RGFRDQLAVIYAACSGPNLKRGMFSAT 202
+ F +Q I +C+ P++++ MFSAT
Sbjct: 290 KTFIEQTDDILNSCTDPSMRKSMFSAT 316
>sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rok1 PE=3 SV=1
Length = 481
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 6/177 (3%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109
R + ACAPTGSGKT A+L PI+ L+ G+RA+IV PTREL +Q Y + +LS G
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK 169
L+ + K + ++ P+ +K+D+ I TP +LV +Q L+ VE+ ++DE+D+
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQT---GLSFEKVEFFVMDEADR 200
Query: 170 LFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
LFE GF +Q I +AC+ N+ + +FSAT V + + ++I VGL+
Sbjct: 201 LFEP---GFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLK 254
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ROK1 PE=3 SV=2
Length = 550
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 112/182 (61%), Gaps = 13/182 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--RGP--KNLGFRAVIVCPTRELAKQTYNETVRL 104
GR + ACAPTGSGKT AFLIP++ ++ P KN G R +I+ PT ELA Q + E +
Sbjct: 151 GRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTM 210
Query: 105 SEGLGLRAHVIGKIQQAAEKFGPR--SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
++G ++ ++ K Q A K + ++ K+D+L++TP +L+ ++ + ++L+ VE L
Sbjct: 211 TKGKKMKIGILSK--QLANKINNKIINSSKYDILVSTPLRLIDSIKNE--TISLSKVEQL 266
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
++DE+DKLF+ +GF +Q I + C+ L++ MFSAT V + + +K +++
Sbjct: 267 VIDETDKLFD---QGFVEQTDEILSNCTNTKLRKSMFSATIPSGVEEMAQSIMKDPIRVI 323
Query: 223 VG 224
+G
Sbjct: 324 IG 325
>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=ROK1 PE=3 SV=2
Length = 537
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSL-RGP--KNLGFRAVIVCPTRELAKQTYNETV 102
S GR + ACAPTGSGKT A+LIP+ +L P KN G R V++ PT ELA Q Y
Sbjct: 140 SAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLA 199
Query: 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
+ G L ++ K + SA KFDVLI TP +L+ L++ + ++L+ VE L
Sbjct: 200 PMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTPLRLIDLVKKE--QVDLSKVEHL 257
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
++DE+DKLF+ GF +Q I + C+ P + MFSAT V + +K +++I
Sbjct: 258 VIDEADKLFD---HGFVEQTDEILSHCTLPTRRTSMFSATIPSGVEEMANSIMKDQIRII 314
Query: 223 VG 224
VG
Sbjct: 315 VG 316
>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=ROK1 PE=3 SV=1
Length = 558
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 110/185 (59%), Gaps = 14/185 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL----RG-PKNLGFRAVIVCPTRELAKQTYNETVR 103
GR + ACAPTGSGKT AFLIP+I SL +G PKN G +++ PT ELA Q + E
Sbjct: 157 GRDLIACAPTGSGKTLAFLIPLIQSLLVSSKGRPKNYGITGLVISPTNELAIQIFQELQI 216
Query: 104 LSEGLGLRAHVIGKIQQAAEKFGPR--SAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
L+ G L ++ K Q A K A K+D++++TP +L+ +++ + ++L+ VE
Sbjct: 217 LTRGKKLNVAILSK--QLANKLNNDIVKASKYDIIVSTPLRLIDIVKNE--KVDLSKVEQ 272
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQI 221
L++DE+DKLF+ +GF +Q I + C+ +++ MFSAT V + ++ +++
Sbjct: 273 LVIDEADKLFD---QGFVEQTDDILSHCTYTKIRKSMFSATIPSGVEEMAHSIMRDPIRV 329
Query: 222 NVGLR 226
+G +
Sbjct: 330 IIGRK 334
>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana
GN=RH57 PE=2 SV=1
Length = 541
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 8/178 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR+ FACAPTGSGKT AF+ P++ L+ P G RAVI+ P RELA QT E +L +G
Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGS 237
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
++ K F S DVLI+TP +L ++ ++L+ VE+L++DESD
Sbjct: 238 NFHIRLMTKPLVKTADF---SKLWCDVLISTPMRLKRAIKAK--KIDLSKVEYLVLDESD 292
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE + Q+ + ACS P++ R +FSAT + V + R + V++ +G +
Sbjct: 293 KLFE---QSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRK 347
>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1
Length = 570
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 118/197 (59%), Gaps = 19/197 (9%)
Query: 27 VVSNSIFKHF-EPHFTITYLSPLG---RQIFACAPTGSGKTAAFLIPIIHSLRGPKNL-G 81
+++N I HF EP PL R + ACAPTGSGKT AFLIP+I + K+ G
Sbjct: 142 LLNNLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQG 201
Query: 82 FRAVIVCPTRELAKQTYNETVRLSEGL------GLRAHVIGKIQQAAEKFGPRSAQKFDV 135
+ +I+ PT+ELA Q + E ++LS + L+ ++ K A + S +K+D+
Sbjct: 202 LKGLIISPTKELANQIFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDI 261
Query: 136 LITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLK 195
+++TP +L+ +++ + AL+L+ V+ LI DE+DKLF+ + F +Q I ++CS +L+
Sbjct: 262 IVSTPLRLIDVVKNE--ALDLSQVKHLIFDEADKLFD---KTFVEQSDDILSSCSHSSLR 316
Query: 196 RGMFSAT---HTEDVAK 209
+ MFSAT + E++AK
Sbjct: 317 KSMFSATIPSNVEEIAK 333
>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=ROK1 PE=3 SV=1
Length = 553
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 105/181 (58%), Gaps = 12/181 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGP---KNLGFRAVIVCPTRELAKQTYNETVRLS 105
R + ACAPTGSGKT AFLIP++ L KN G R +I+ PT ELA Q + + +S
Sbjct: 157 NRDLIACAPTGSGKTLAFLIPLLQQLVSQNVLKNHGIRGLIISPTNELAVQIFQQLEIIS 216
Query: 106 EGLGLRAHVIGKIQQAAEKFGPR--SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
+G GL ++ K Q A K A K+D+L++TP +L+ ++++ ++L+ V L+
Sbjct: 217 KGKGLNIAILSK--QLAGKISNDVVKASKYDILVSTPLRLIDVVKLG--KVDLSKVTQLV 272
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE+DKLF+ GF +Q + + C+ +++ MFSAT V + +K +++ +
Sbjct: 273 IDEADKLFD---HGFAEQTDELLSHCTNVKIRKSMFSATIPSGVEEMAHSIMKDPIRVII 329
Query: 224 G 224
G
Sbjct: 330 G 330
>sp|Q75AE1|ROK1_ASHGO ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ROK1
PE=3 SV=1
Length = 569
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 113/188 (60%), Gaps = 13/188 (6%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL--GFRAVIVCPTRELAKQTYNETV 102
+S R I ACAPTGSGKT AFLIP++ + K + G + +I+ PT+ELA Q ++E
Sbjct: 156 ISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAVGTGVKGLIISPTKELANQIFDECS 215
Query: 103 RLSEGLGLRAH------VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156
+L++ + L ++ K A K S +K+D++I+TP +L+ +++ + +L+L
Sbjct: 216 KLAQRIFLEKKRPLSVALLSKSLAAKLKNQIVSDKKYDIIISTPLRLIDIVKSE--SLDL 273
Query: 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216
+ V++LI DE+DKLF+ + F +Q I +ACS PN+ + +FSAT V + + +
Sbjct: 274 SAVKYLIFDEADKLFD---KTFVEQTDDILSACSHPNISKVLFSATLPSSVEELAQSIMT 330
Query: 217 RRVQINVG 224
V++ +G
Sbjct: 331 DPVRVIIG 338
>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=ROK1 PE=3 SV=1
Length = 564
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 104/171 (60%), Gaps = 15/171 (8%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL-GFRAVIVCPTRELAKQTYNETVRLSEG 107
R + AC PTGSGKT AFLIP++ + K G + +I+ PT+ELA Q + E +LS
Sbjct: 159 NRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSHK 218
Query: 108 LGLRAHVIGKIQQAAEKFGPR------SAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
+ L ++ ++ G + S +K+D++I+TP +L+ +++ + AL+L+ V+
Sbjct: 219 IFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNE--ALDLSKVKH 276
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT---HTEDVAK 209
LI DE+DKLF+ + F +Q I +AC P+L++ MFSAT + E++A+
Sbjct: 277 LIFDEADKLFD---KTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQ 324
>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROK1 PE=1 SV=1
Length = 564
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 104/171 (60%), Gaps = 15/171 (8%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL-GFRAVIVCPTRELAKQTYNETVRLSEG 107
R + AC PTGSGKT AFLIP++ + K G + +I+ PT+ELA Q + E +LS
Sbjct: 159 NRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYK 218
Query: 108 LGLRAHVIGKIQQAAEKFGPR------SAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
+ L ++ ++ G + S +K+D++I+TP +L+ +++ + AL+L+ V+
Sbjct: 219 IFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNE--ALDLSKVKH 276
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT---HTEDVAK 209
LI DE+DKLF+ + F +Q I +AC P+L++ MFSAT + E++A+
Sbjct: 277 LIFDEADKLFD---KTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQ 324
>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ROK1 PE=3 SV=1
Length = 579
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 104/170 (61%), Gaps = 15/170 (8%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R + ACAPTGSGKT AFLIP++ + K +G + +I+ PT+ELA Q + E +L+ +
Sbjct: 171 RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKI 230
Query: 109 GLRAHVIGKIQQAAEKFGPR------SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
L ++ ++ + S K+D++I+TP +L+ ++Q + ALNL V+ L
Sbjct: 231 YLDKKRPLQVALLSKSLSSKLKNKVISEDKYDIIISTPLRLITVVQEE--ALNLGKVKHL 288
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT---HTEDVAK 209
I DE+DKLF+ + F +Q I ++C+ P+L++ MFSAT + E++A+
Sbjct: 289 IFDEADKLFD---KTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQ 335
>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=CHR1 PE=3 SV=1
Length = 578
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 13/182 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG---PKNLGFRAVIVCPTRELAKQTYNETVRLS 105
R + ACAPTGSGKT AFLIP++ + KN G R +I+ PT ELA Q + E ++
Sbjct: 168 NRDLIACAPTGSGKTLAFLIPLVQQILSKNVSKNHGIRGLIISPTNELAVQIFQELEIIT 227
Query: 106 EGLG-LRAHVIGKIQQAAEKFGPR--SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
G + ++ K Q A K + K+D++++TP +L+ +++ ++L+ +E L
Sbjct: 228 RGCKQINVAILSK--QLASKLNNNIIKSSKYDIIVSTPLRLIDVVKQG--NMDLSKIEQL 283
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
I+DE+DKLF+ GF +Q I C+ +++ +FSAT V + +K ++I
Sbjct: 284 IIDEADKLFD---HGFAEQTDEILTHCTNLKIRKSIFSATIPSSVEEMAHSIMKDPLRII 340
Query: 223 VG 224
+G
Sbjct: 341 IG 342
>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ROK1 PE=3 SV=1
Length = 547
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 16/164 (9%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL-----RGPKNLGFRAVIVCPTRELAKQTYNETVR 103
GR + ACAPTGSGKT A+ IP++ L G +A++V PT+ELA Q +N
Sbjct: 148 GRDLIACAPTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFS 207
Query: 104 LSEGLG-----LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLAN 158
L G+G L+ ++ K + G S+QK+D+ ITTP +LV L + +L+L +
Sbjct: 208 LCVGVGKKKDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSAL--NDGSLDLGS 265
Query: 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
++ +I DE+DKLFE +GF Q+ I AAC +++ +FSAT
Sbjct: 266 LDLVIFDEADKLFE---KGFATQVDDILAACPS-GIQKTLFSAT 305
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DRS1 PE=3 SV=1
Length = 808
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 16/187 (8%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSL----RGPKNLGFRAVIVCPTRELAKQTYNE 100
L+ LGR I A TGSGKTAAF++PI+ L RG R +++CPTRELA Q
Sbjct: 255 LALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAV 314
Query: 101 TVRLSE--GLGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157
L+E GL +R A ++G + A+ R+ D+LI TP +L+ L + P+ L+
Sbjct: 315 GKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLP--DILIATPGRLIDHL-TNTPSFTLS 371
Query: 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLK 216
++ L++DE+D++ EA GF D+L I AC P ++ M FSAT T+ V + + L
Sbjct: 372 ALDVLVIDEADRMLEA---GFTDELEEIIKAC--PRSRQTMLFSATMTDSVDELVKLSLD 426
Query: 217 RRVQINV 223
+ +++ V
Sbjct: 427 KPIRVFV 433
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DRS1 PE=3 SV=1
Length = 808
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 16/187 (8%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSL----RGPKNLGFRAVIVCPTRELAKQTYNE 100
L+ LGR I A TGSGKTAAF++PI+ L RG R +++CPTRELA Q
Sbjct: 255 LALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAV 314
Query: 101 TVRLSE--GLGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157
L+E GL +R A ++G + A+ R+ D+LI TP +L+ L + P+ L+
Sbjct: 315 GKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLP--DILIATPGRLIDHL-TNTPSFTLS 371
Query: 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLK 216
++ L++DE+D++ EA GF D+L I AC P ++ M FSAT T+ V + + L
Sbjct: 372 ALDVLVIDEADRMLEA---GFTDELEEIIKAC--PRSRQTMLFSATMTDSVDELVKLSLD 426
Query: 217 RRVQINV 223
+ +++ V
Sbjct: 427 KPIRVFV 433
>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=DBP10 PE=3 SV=2
Length = 931
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
R + A TGSGKTAAF +P+I L+G +G RA+I+ P+RELA QTY + S+G
Sbjct: 136 NRDVVGMARTGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKG 195
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDE 166
LRA V+ ++F + D++I TP + ++L ++M L+L VE+++ DE
Sbjct: 196 SDLRAIVLTGGDSLEDQFSSMVSNP-DIVIATPGRFLHLQVEM---QLDLKTVEYIVFDE 251
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
+D LFE +GF +QL + A P + +FSAT
Sbjct: 252 ADHLFE---QGFAEQLNELLAVLP-PQRQSLLFSAT 283
>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP10 PE=3 SV=1
Length = 948
Score = 94.0 bits (232), Expect = 9e-19, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 13/177 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109
R + A TGSGKTAAF++P+I L+ G RAVI+ P+RELA QTY + S G
Sbjct: 159 RDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTN 218
Query: 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL---LQMDPPALNLANVEWLIVDE 166
L++ V+ E FG + K D+++ TP + ++L +Q D L +V++++ DE
Sbjct: 219 LQSIVLIGGDSLEEDFG-KMMTKPDIIVCTPGRFLHLKVEMQYD-----LMSVQYIVFDE 272
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+D+LFE GF +QL + A N + +FSAT + ++ + L V + +
Sbjct: 273 ADRLFEM---GFAEQLNELLLALPS-NRQSLLFSATLPRSLVEFAKAGLTNPVLVRL 325
>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DBP10 PE=1 SV=2
Length = 995
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R I A TGSGKTAAF++P++ L+ +G RAVI+ P+RELA QT+N + G
Sbjct: 175 RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGT 234
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ ++ E+FG DV+I TP + ++L ++M+ L+L +VE+++ DE+
Sbjct: 235 ELRSVLLTGGDSLEEQFGMMMTNP-DVIIATPGRFLHLKVEMN---LDLKSVEYVVFDEA 290
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRG-MFSAT 202
D+LFE GF++QL + A S P ++ +FSAT
Sbjct: 291 DRLFEM---GFQEQLNELLA--SLPTTRQTLLFSAT 321
>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DBP10 PE=3 SV=1
Length = 995
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R I A TGSGKTAAF++P++ L+ +G RAVI+ P+RELA QT+N + G
Sbjct: 175 RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGT 234
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ ++ E+FG DV+I TP + ++L ++M+ L+L +VE+++ DE+
Sbjct: 235 ELRSVLLTGGDSLEEQFGMMMTNP-DVIIATPGRFLHLKVEMN---LDLKSVEYVVFDEA 290
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRG-MFSAT 202
D+LFE GF++QL + A S P ++ +FSAT
Sbjct: 291 DRLFEM---GFQEQLNELLA--SLPTTRQTLLFSAT 321
>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP10 PE=3 SV=1
Length = 908
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 13/157 (8%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR + A TGSGKTAAF++P+I L+ + G RAVI+ P+RELA QTY + S G
Sbjct: 136 GRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGT 195
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL---LQMDPPALNLANVEWLIVD 165
L++ V+ E F + K D+++ TP + ++L +Q D L V++++ D
Sbjct: 196 NLQSIVLIGGDSLEEDFS-KMMTKPDIIVCTPGRFLHLKVEMQYD-----LMTVQYIVFD 249
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
E+D+LFE GF +QL + A+ N + +FSAT
Sbjct: 250 EADRLFEM---GFAEQLNELLASLPS-NRQSLLFSAT 282
>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP10 PE=3 SV=2
Length = 932
Score = 92.8 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 12/156 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R + A TGSGKTAAF +P++ L+ +G RA+I+ P+RELA QT+ + S+G
Sbjct: 135 RDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGT 194
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ V+ E+F DV++ TP + ++L ++M+ L L VE+++ DE+
Sbjct: 195 DLRSIVLIGGDSLEEQFSSMMTNP-DVIVATPGRFLHLKVEME---LELKTVEYIVFDEA 250
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRG-MFSAT 202
D+LFE GF +QL + AA P+ ++ +FSAT
Sbjct: 251 DRLFEM---GFAEQLNELIAAL--PSSRQSLLFSAT 281
>sp|Q755A5|DBP3_ASHGO ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP3
PE=3 SV=1
Length = 535
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL--GFRAVIVCPTRELAKQTYNETVRLSE 106
G+ + A TGSGKT AF +P I+SL K+ G + +++ PTRELA Q Y+ V+L++
Sbjct: 160 GKDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQLTD 219
Query: 107 GLGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVD 165
+GL V G +Q+ +++ + AQ V++ TP +L+ L++ + LA V++L++D
Sbjct: 220 KVGLNCCCVYGGVQKDSQREQLKKAQ---VVVATPGRLLDLIE--EGSAKLAGVQYLVLD 274
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225
E+D++ E +GF + + I + MF+AT ++V + ++ V++++G
Sbjct: 275 EADRMLE---KGFEEDIKRIIKETKSDVRQTLMFTATWPKEVRELASTFMRAPVKVSIGN 331
Query: 226 R 226
R
Sbjct: 332 R 332
>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP10 PE=3 SV=1
Length = 969
Score = 90.9 bits (224), Expect = 6e-18, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R I A TGSGKTAAF++P+I L+ +G RA+I+ P+RELA QT++ S G
Sbjct: 153 RDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGT 212
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ ++ ++FG DV+I TP + ++L ++M+ L+L +VE+ + DE+
Sbjct: 213 HLRSVLLTGGDSLEDQFGMMMTNP-DVIIATPGRFLHLKVEMN---LDLKSVEYAVFDEA 268
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRG-MFSAT 202
D+LFE GF++QL + AA P+ ++ +FSAT
Sbjct: 269 DRLFEM---GFQEQLNELLAAL--PSSRQTLLFSAT 299
>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum
GN=helA PE=3 SV=1
Length = 1091
Score = 90.9 bits (224), Expect = 6e-18, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G I A TGSGKT AF+IP+I L +G RAVI+ PTRELA QT+ S+G
Sbjct: 267 GHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQG 326
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLV-YLLQMDPPALNLANVEWLIVDE 166
LR +I ++F A+ D++I TP +L+ +LL+ ++L+ V++++ DE
Sbjct: 327 TQLRTILIVGGDSMEDQF-TDLARNPDIIIATPGRLMHHLLET---GMSLSKVQYIVFDE 382
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+D+LFE GF +QL I + S N + +FSAT + + R L IN+
Sbjct: 383 ADRLFEM---GFNEQLTEILSKLS-ENRQTLLFSATLPSLLVDFVRAGLNNPKLINL 435
>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP10 PE=3 SV=2
Length = 914
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 12/157 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG--PKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
R + A TGSGKTAAF++P++ L+ PK +G RAVI+ P+RELA QT+ + ++
Sbjct: 136 SRDVVGMARTGSGKTAAFVLPVVEKLKSHSPK-VGVRAVILSPSRELALQTFKQVKEFTK 194
Query: 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVD 165
G LR+ V+ ++F D+L+ TP + ++L ++M+ L+L VE+++ D
Sbjct: 195 GTDLRSIVLIGGDSLEDQFSSMMTNP-DILVATPGRFLHLKVEMN---LDLKTVEYIVFD 250
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
E+D+LFE GF +QL + A P+ + +FSAT
Sbjct: 251 EADRLFEM---GFAEQLNELLVALP-PSRQSLLFSAT 283
>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DRS1 PE=3 SV=1
Length = 932
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL------RGPKNLGFRAVIVCPTRELAKQTYNETV 102
G+ I A A TGSGKTAAF+IP I L R P R +I+ PTRELA Q Y+
Sbjct: 370 GKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGK 429
Query: 103 RLSEGLGLR-----AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157
+++ +R + K Q+A K P +V+I TP +L+ ++ + + L
Sbjct: 430 SIAKFTDIRFCLCVGGLSVKSQEAELKLRP------EVVIATPGRLIDHVR-NSASFTLD 482
Query: 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKR 217
++E L++DE+D++ E GF D+L I +C + +FSAT T+DV + R LKR
Sbjct: 483 DIEILVMDEADRMLED---GFADELNEIVKSCPKGARQTMLFSATMTDDVEQLVRLSLKR 539
Query: 218 RVQI 221
V++
Sbjct: 540 PVRL 543
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana
GN=RH24 PE=1 SV=2
Length = 760
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIP-IIHSLRGP---KNLGFRAVIVCPTRELAKQTYNETVRL 104
GR + A TGSGKTAAF++P I+H + P ++ G VI PTRELA Q + E +
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Query: 105 SEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIV 164
S+ GLR + E+F A ++++ TP +L+ +L+M AL + +L++
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKA-GCEIVVATPGRLIDMLKM--KALTMMRASYLVL 381
Query: 165 DESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
DE+D++F+ GF Q+ I P+ + +FSAT V K R L +++ VG
Sbjct: 382 DEADRMFDL---GFEPQVRSIVGQIR-PDRQTLLFSATMPWKVEKLAREILSDPIRVTVG 437
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DED1 PE=3 SV=1
Length = 672
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 25/194 (12%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHS--LRGP-----KNLGFRA-------VIVCPTRELA 94
GR + ACA TGSGKT FL P++ ++GP N F + +++ PTREL
Sbjct: 223 GRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELV 282
Query: 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQK-FDVLITTPNKLVYLLQMDPPA 153
Q Y E+ + S +RA V+ ++ R+ + D+L+ TP +L LL D
Sbjct: 283 SQIYEESKKFSYRSWVRACVVYGGADIGQQM--RNMDRGCDLLVATPGRLKDLL--DRGK 338
Query: 154 LNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRG---MFSATHTEDVAKW 210
++LAN+ +L++DE+D++ + GF Q+ I C P +K MFSAT D+
Sbjct: 339 VSLANIRYLVLDEADRMLDM---GFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQML 395
Query: 211 CRRKLKRRVQINVG 224
R LK V ++VG
Sbjct: 396 ARDFLKDYVFLSVG 409
>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP3 PE=3 SV=1
Length = 540
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
G+ + A TGSGKT AF +P I++L K G + +++ PTRELA Q Y+ V L++
Sbjct: 165 GKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLLTQ 224
Query: 107 GLGLRAHVI-GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVD 165
+G+ V+ G + + ++ R K +V++ TP +L+ L++ +++L+ V+++++D
Sbjct: 225 KVGIDCCVVYGGVPKDDQR---RQIAKSNVVVATPGRLLDLIEEG--SVDLSPVDYMVLD 279
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225
E+D++ E +GF + + I + + MF+AT ++V + +K V++++G
Sbjct: 280 EADRMLE---KGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELASTFMKEPVKVSIGN 336
Query: 226 R 226
R
Sbjct: 337 R 337
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP3 PE=3 SV=1
Length = 504
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
G+ + A TGSGKT AF +P I+++ G K+ + +++ PTRELA Q Y+ + L++
Sbjct: 129 GKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTD 188
Query: 107 GLGLRA-HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVD 165
GLR+ V G + + ++ R +Q V++ TP +L+ L++ +++L++V +L++D
Sbjct: 189 ACGLRSCCVYGGVPKDQQREDLRRSQ---VVVATPGRLLDLIE--EGSVDLSHVNYLVLD 243
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225
E+D++ E +GF + + I + + MF+AT ++V + + V++++G
Sbjct: 244 EADRMLE---KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGN 300
Query: 226 R 226
R
Sbjct: 301 R 301
>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=DBP10 PE=3 SV=1
Length = 762
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 10/169 (5%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R + A TGSGKTAAF+IP+I L+ +G RA+I+ P+RELA QT L +G
Sbjct: 124 RDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGT 183
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
L+ ++ E+FG +A D++I TP + ++L ++M +LNL++V +++ DE+
Sbjct: 184 DLKTVLLVGGDSLEEQFGLMAANP-DIIIATPGRFLHLKVEM---SLNLSSVRYVVFDEA 239
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216
D+LFE GF QL I A P+ + +FSAT + ++ R L+
Sbjct: 240 DRLFEM---GFAAQLTEILHALP-PSRQTLLFSATLPSSLVEFARAGLQ 284
>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP10 PE=3 SV=1
Length = 973
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R I A TGSGKTAAF++P+I L+ +G RAVI+ P+RELA QT+ S+G
Sbjct: 164 RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS 223
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ ++ ++FG DV+I TP + ++L ++M+ L+L +VE+++ DE+
Sbjct: 224 DLRSILLTGGDSLEDQFGMMMGNP-DVVIATPGRFLHLKVEMN---LDLKSVEYVVFDEA 279
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
D+LFE GF++QL + A N + +FSAT
Sbjct: 280 DRLFEM---GFQEQLNELLVAFP-TNRQTLLFSAT 310
>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP10 PE=3 SV=1
Length = 977
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R I A TGSGKTAAF++P+I L+ +G RAVI+ P+RELA QT+ S+G
Sbjct: 159 RDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFSKGT 218
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDES 167
LR+ ++ ++F + DV++ TP + ++L ++M +L+L VE+++ DE+
Sbjct: 219 HLRSVLLTGGDSLEDQFSMMMSNP-DVIVATPGRFLHLKVEM---SLDLKTVEYVVFDEA 274
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
D+LFE GF++QL + AA N + +FSAT
Sbjct: 275 DRLFEM---GFQEQLNELLAALP-MNRQTLLFSAT 305
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 87.8 bits (216), Expect = 6e-17, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL----GFRAVIVCPTRELAKQTYNETVRL 104
GR + A TGSGKT AFL+P+ + ++L G AVI+ PTRELA Q E +
Sbjct: 409 GRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKF 468
Query: 105 SEGLGLRAHVI----GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANV 159
S+ LGLR + G +Q AE R A+ +++ TP +++ +L + + NL V
Sbjct: 469 SKTLGLRVVCVYGGTGISEQIAEL--KRGAE---IIVCTPGRMIDMLAANSGRVTNLRRV 523
Query: 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRV 219
++++DE+D++F+ GF Q+ I P+ + MFSAT + RR L + +
Sbjct: 524 TYVVLDEADRMFDM---GFEPQVMRIVDNVR-PDRQTVMFSATFPRAMEALARRILSKPI 579
Query: 220 QINVGLR 226
++ VG R
Sbjct: 580 EVQVGGR 586
>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP3 PE=3 SV=1
Length = 526
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + A TGSGKT AF +P I+++ G + + PTRELA Q Y+ V L+
Sbjct: 153 GKDVIGVAETGSGKTFAFGVPAINNILTLGKSGLSVLCISPTRELASQIYDNLVDLTSNT 212
Query: 109 GLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
++ V G + + + ++A +V++ TP +L+ L++ A+NL V++L++DE+
Sbjct: 213 NVKCVCVYGGVPKHDQVKNLKNA---NVVVATPGRLLDLIE--DGAVNLGTVDYLVLDEA 267
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
D++ E GF D + I N + MF+AT ++V K + + V++++G R
Sbjct: 268 DRMLET---GFEDAIKAIIGGTKKENRQTLMFTATWPQEVRKLASTFMNQPVKVSIGDR 323
>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP3 PE=3 SV=1
Length = 527
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + A TGSGKT AF +P I+++ G + + + PTRELA Q Y+ V L+
Sbjct: 154 GKDVIGVAETGSGKTFAFGVPAINNILTHDKKGLKVLCISPTRELALQIYDNLVDLTANT 213
Query: 109 GLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
L+ V G + + + R+A V++ TP +L+ LL + AL+L ++E+L++DE+
Sbjct: 214 PLKCVAVYGGVSKHEQVSSLRNAS---VVVATPGRLIDLL--NDGALSLDSIEYLVLDEA 268
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
D++ E +GF + + + N + MF+AT ++V + + V++++G R
Sbjct: 269 DRMLE---KGFEQDIKSVMQQTNHANRQTLMFTATWPKEVRELASTFMNSPVKVSIGDR 324
>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP3 PE=1 SV=2
Length = 523
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPII-HSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ + A TGSGKT AF +P I H + K G + +++ PTRELA Q Y+ + L++
Sbjct: 149 GKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDK 208
Query: 108 LGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+G++ V G + + ++ + +Q V++ TP +L+ LLQ +++L+ V +L++DE
Sbjct: 209 VGMQCCCVYGGVPKDEQRIQLKKSQ---VVVATPGRLLDLLQ--EGSVDLSQVNYLVLDE 263
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
+D++ E +GF + + I + MF+AT ++V + + +++++G
Sbjct: 264 ADRMLE---KGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIG 318
>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP3 PE=3 SV=1
Length = 523
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPII-HSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ + A TGSGKT AF +P I H + K G + +++ PTRELA Q Y+ + L++
Sbjct: 149 GKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDK 208
Query: 108 LGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+G++ V G + + ++ + +Q V++ TP +L+ LLQ +++L+ V +L++DE
Sbjct: 209 VGMQCCCVYGGVPKDEQRIQLKKSQ---VVVATPGRLLDLLQEG--SVDLSQVNYLVLDE 263
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
+D++ E +GF + + I + MF+AT ++V + + +++++G
Sbjct: 264 ADRMLE---KGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIG 318
>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1
Length = 530
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 14/182 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL-----RGPKNLGFRAVIVCPTRELAKQTYNETVR 103
G+ + A TGSGKT AF +P I+++ P G + +I+ PTRELA Q Y+ V
Sbjct: 152 GKDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVI 211
Query: 104 LSEGLGLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
L++ +GL V G + + ++ + +Q V++ TP +L+ L+Q A NL+NV +L
Sbjct: 212 LTDKVGLECCCVYGGVPKDEQRTQLKRSQ---VVVATPGRLLDLIQ--EGAANLSNVNYL 266
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
++DE+D++ E +GF + + I + MF+AT ++V + + ++++
Sbjct: 267 VLDEADRMLE---KGFEEDIKNIIRETKSTGRQTLMFTATWPKEVRELASTFMNSPIKVS 323
Query: 223 VG 224
+G
Sbjct: 324 IG 325
>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=drs1
PE=3 SV=1
Length = 830
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105
LG+ I A TGSGKTAAF++PI+ L R K R I+ PTRELA Q YN +L+
Sbjct: 346 LGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLA 405
Query: 106 EGLGLRAHVIGKIQQAAEKFGPRSAQKF-----DVLITTPNKLVYLLQMDPPALNLANVE 160
H Q F R + DV+I TP + + ++ + P+ + +E
Sbjct: 406 ------THTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMR-NSPSFTVDTLE 458
Query: 161 WLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLKRRV 219
L++DE+D++ E GF D+L I P ++ M FSAT T+ V K R L R V
Sbjct: 459 ILVLDEADRMLE---DGFADELNEILTTI--PKSRQTMLFSATMTDSVDKLIRVGLNRPV 513
Query: 220 QINV 223
++ V
Sbjct: 514 RLMV 517
>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=drs1 PE=3 SV=1
Length = 754
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 32/191 (16%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGFRAVIVCPTRELAKQTYNETV 102
L+ LG+ I A TGSGKTAAF++PI+ L R K R +I+CPTRELA Q ++
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 103 RLSE-----------GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP 151
+++ GL L K+Q+ + P D++I TP + + ++ +
Sbjct: 352 KIASFTDIMVCLCIGGLSL------KLQEQELRKRP------DIVIATPGRFIDHMR-NS 398
Query: 152 PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKW 210
+ N+E +++DE+D++ E GF D+L I AC P ++ M FSAT T+ V
Sbjct: 399 QGFTVENIEIMVMDEADRMLED---GFADELNEIIQAC--PKSRQTMLFSATMTDKVDDL 453
Query: 211 CRRKLKRRVQI 221
R L R V++
Sbjct: 454 IRLSLNRPVRV 464
>sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rok1
PE=3 SV=1
Length = 742
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 39/204 (19%)
Query: 51 QIFACAPTGSGKTAAFLIPII-----HSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105
+ APTGSGKT +F+IP+I H P+ G AV+V PT+ELA Q NE +L+
Sbjct: 243 DLLVVAPTGSGKTLSFMIPVINKIVRHHHTHPEERGIFAVVVAPTKELASQIVNEGRKLA 302
Query: 106 EGLGLRAHVIGKIQQAAEKF-----------------------------GPRSAQKFDVL 136
G G++ ++ K + E+ GP K D+L
Sbjct: 303 LGTGVKVTLMKKGMRVVERENEDEDVLDESNSESSESESDERTPNNKNKGPVPITKSDIL 362
Query: 137 ITTPNKLVYLLQMD--PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNL 194
++TP +LV L + P L V L++DE+D L + FRDQ I+ +C+ P L
Sbjct: 363 VSTPLQLVNALSDNKTKPLATLPLVRNLVLDEADVLLDP---LFRDQTLDIWRSCTHPEL 419
Query: 195 KRGMFSATHTEDVAKWCRRKLKRR 218
+ ++SAT + + +K R
Sbjct: 420 RASLWSATMGSSIEDMAKTTIKER 443
>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-10 PE=3 SV=1
Length = 934
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 12/170 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRG--PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
+ + A TGSGKTAAF+IP+I L+G P+ +G RA+I+ P+RELA QT L G
Sbjct: 137 KDVVGMARTGSGKTAAFVIPMIERLKGHSPR-VGSRALIMSPSRELALQTLKVVKELGRG 195
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYL-LQMDPPALNLANVEWLIVDE 166
L+ ++ E+FG A D++I TP + ++L ++M+ L+LA++++++ DE
Sbjct: 196 TDLKTVLLVGGDSLEEQFG-MMASNPDIIIATPGRFLHLKVEMN---LSLASIKYVVFDE 251
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216
+D+LFE GF +L I A P+ + +FSAT + ++ R L+
Sbjct: 252 ADRLFEM---GFATELTEILHALP-PSRQTLLFSATLPSSLVEFARAGLQ 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,031,220
Number of Sequences: 539616
Number of extensions: 3134713
Number of successful extensions: 13822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 646
Number of HSP's that attempted gapping in prelim test: 11162
Number of HSP's gapped (non-prelim): 1365
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)