Query psy12977
Match_columns 226
No_of_seqs 127 out of 1418
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 15:59:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 1.2E-37 2.6E-42 267.0 18.2 201 18-224 96-302 (519)
2 COG0513 SrmB Superfamily II DN 100.0 1.2E-36 2.6E-41 267.9 18.6 200 18-224 34-236 (513)
3 KOG0345|consensus 100.0 8E-37 1.7E-41 254.3 15.2 203 19-225 12-220 (567)
4 KOG0330|consensus 100.0 1.9E-36 4.1E-41 247.1 14.8 201 18-225 66-267 (476)
5 KOG0338|consensus 100.0 1.4E-35 3.1E-40 249.0 14.2 202 18-225 186-390 (691)
6 PRK04837 ATP-dependent RNA hel 100.0 4.2E-34 9.2E-39 247.6 19.2 202 18-225 13-222 (423)
7 PTZ00110 helicase; Provisional 100.0 3E-34 6.6E-39 254.6 17.7 199 19-224 136-340 (545)
8 PRK11776 ATP-dependent RNA hel 100.0 5.7E-34 1.2E-38 249.3 18.7 199 19-225 10-210 (460)
9 PRK10590 ATP-dependent RNA hel 100.0 7.6E-34 1.7E-38 248.0 18.8 200 19-225 7-212 (456)
10 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-33 2.5E-38 250.0 18.3 198 19-224 127-331 (518)
11 KOG0342|consensus 100.0 8.4E-34 1.8E-38 237.4 15.9 202 18-225 87-294 (543)
12 KOG0328|consensus 100.0 3.2E-34 6.9E-39 225.8 11.7 200 19-226 33-233 (400)
13 PRK11634 ATP-dependent RNA hel 100.0 1.6E-33 3.4E-38 252.7 17.8 198 19-224 12-211 (629)
14 PRK01297 ATP-dependent RNA hel 100.0 8.5E-33 1.8E-37 242.7 18.7 201 19-224 93-301 (475)
15 KOG0326|consensus 100.0 2E-33 4.3E-38 224.6 13.2 197 19-223 91-288 (459)
16 KOG0343|consensus 100.0 1.4E-33 3.1E-38 238.9 12.1 200 18-224 74-277 (758)
17 PRK04537 ATP-dependent RNA hel 100.0 1E-32 2.2E-37 245.9 17.9 201 19-224 15-223 (572)
18 PRK11192 ATP-dependent RNA hel 100.0 3.5E-32 7.5E-37 236.5 19.6 200 19-225 7-211 (434)
19 KOG0336|consensus 100.0 7.6E-33 1.7E-37 227.6 14.0 197 20-224 227-429 (629)
20 KOG0346|consensus 100.0 7.2E-33 1.6E-37 229.3 13.6 200 20-225 26-233 (569)
21 cd00268 DEADc DEAD-box helicas 100.0 1.8E-31 3.9E-36 209.4 18.1 196 20-222 6-203 (203)
22 KOG0348|consensus 100.0 1.3E-32 2.9E-37 232.3 10.5 200 21-224 144-362 (708)
23 PTZ00424 helicase 45; Provisio 100.0 3.5E-31 7.7E-36 228.0 19.3 198 19-224 34-232 (401)
24 KOG0339|consensus 100.0 4.2E-31 9.2E-36 222.1 17.6 195 22-223 232-431 (731)
25 KOG0335|consensus 100.0 1.6E-31 3.4E-36 226.2 14.8 197 22-224 83-294 (482)
26 KOG0337|consensus 100.0 8.5E-31 1.8E-35 216.0 11.7 200 18-224 26-226 (529)
27 KOG0334|consensus 100.0 5.2E-30 1.1E-34 230.8 11.6 205 17-226 369-579 (997)
28 KOG0333|consensus 100.0 2.3E-29 5.1E-34 212.3 13.3 200 19-224 251-483 (673)
29 KOG0347|consensus 100.0 6.3E-30 1.4E-34 216.8 9.2 183 19-205 187-388 (731)
30 KOG0329|consensus 100.0 2.2E-29 4.7E-34 196.2 10.6 213 6-225 34-249 (387)
31 PF00270 DEAD: DEAD/DEAH box h 100.0 8.6E-29 1.9E-33 188.4 12.6 166 37-209 1-168 (169)
32 KOG0327|consensus 100.0 6.1E-29 1.3E-33 203.1 11.9 200 19-225 32-232 (397)
33 KOG0340|consensus 100.0 2.7E-28 5.9E-33 197.5 13.0 189 18-212 12-203 (442)
34 TIGR03817 DECH_helic helicase/ 100.0 8.2E-28 1.8E-32 219.7 17.4 195 20-221 21-221 (742)
35 KOG4284|consensus 100.0 3E-28 6.5E-33 210.0 13.1 201 18-226 30-232 (980)
36 KOG0332|consensus 100.0 2.8E-28 6.1E-33 198.5 10.5 206 12-226 87-297 (477)
37 KOG0341|consensus 100.0 8.1E-29 1.8E-33 202.8 7.1 198 21-225 178-389 (610)
38 PRK02362 ski2-like helicase; P 99.9 6.1E-27 1.3E-31 215.0 16.0 181 19-213 7-193 (737)
39 PRK00254 ski2-like helicase; P 99.9 3E-26 6.5E-31 210.0 16.3 178 20-211 8-189 (720)
40 KOG0350|consensus 99.9 1E-26 2.2E-31 195.5 10.4 198 22-220 146-387 (620)
41 KOG0344|consensus 99.9 2.4E-26 5.2E-31 196.5 9.6 204 21-226 144-354 (593)
42 PRK13767 ATP-dependent helicas 99.9 7.8E-26 1.7E-30 210.2 13.4 193 19-213 16-229 (876)
43 COG1201 Lhr Lhr-like helicases 99.9 3.4E-25 7.3E-30 199.9 14.5 191 19-213 7-205 (814)
44 PRK01172 ski2-like helicase; P 99.9 7.8E-25 1.7E-29 199.6 14.8 173 20-205 8-181 (674)
45 COG1204 Superfamily II helicas 99.9 4.9E-24 1.1E-28 193.9 14.5 183 20-213 16-202 (766)
46 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.2E-23 2.5E-28 190.9 15.6 186 31-224 12-236 (844)
47 TIGR00614 recQ_fam ATP-depende 99.9 3.5E-24 7.7E-29 187.8 12.0 172 29-215 5-184 (470)
48 PRK09401 reverse gyrase; Revie 99.9 7E-23 1.5E-27 193.7 16.7 164 35-206 80-281 (1176)
49 COG1205 Distinct helicase fami 99.9 3.7E-22 7.9E-27 183.8 15.9 193 25-221 60-259 (851)
50 PLN03137 ATP-dependent DNA hel 99.9 9.9E-23 2.1E-27 188.1 11.9 173 29-215 454-638 (1195)
51 TIGR01389 recQ ATP-dependent D 99.9 2.2E-22 4.8E-27 181.1 13.5 172 29-216 7-185 (591)
52 smart00487 DEXDc DEAD-like hel 99.9 1.8E-21 3.9E-26 150.6 16.8 186 30-224 3-191 (201)
53 PRK14701 reverse gyrase; Provi 99.9 6.7E-22 1.5E-26 191.0 17.3 194 20-225 64-299 (1638)
54 KOG0952|consensus 99.9 7.9E-23 1.7E-27 184.2 9.7 181 29-213 104-297 (1230)
55 TIGR00580 mfd transcription-re 99.9 5.3E-22 1.2E-26 183.9 14.7 181 23-224 439-630 (926)
56 PRK10689 transcription-repair 99.9 6E-22 1.3E-26 187.1 15.1 179 25-224 591-779 (1147)
57 PRK11057 ATP-dependent DNA hel 99.9 4.1E-22 8.9E-27 179.4 13.3 174 30-219 20-202 (607)
58 PRK09751 putative ATP-dependen 99.9 1.4E-21 3E-26 186.3 16.1 149 54-205 1-171 (1490)
59 TIGR01054 rgy reverse gyrase. 99.9 9.2E-22 2E-26 186.3 14.5 143 22-173 65-214 (1171)
60 TIGR00643 recG ATP-dependent D 99.9 1.9E-21 4.1E-26 175.8 13.3 164 25-207 226-400 (630)
61 PRK10917 ATP-dependent DNA hel 99.9 6.2E-21 1.3E-25 173.7 15.5 161 29-210 256-426 (681)
62 PHA02653 RNA helicase NPH-II; 99.9 5.2E-21 1.1E-25 172.1 14.3 166 44-226 174-353 (675)
63 TIGR01587 cas3_core CRISPR-ass 99.9 5.3E-21 1.1E-25 162.5 11.9 158 51-217 1-179 (358)
64 PRK11664 ATP-dependent RNA hel 99.8 1E-19 2.3E-24 167.3 18.5 160 47-226 18-179 (812)
65 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1E-19 2.2E-24 167.2 18.2 159 47-226 15-176 (819)
66 TIGR03158 cas3_cyano CRISPR-as 99.8 9.5E-20 2.1E-24 154.5 15.9 172 40-219 2-209 (357)
67 COG1111 MPH1 ERCC4-like helica 99.8 3E-19 6.5E-24 151.3 13.8 165 48-223 28-195 (542)
68 PHA02558 uvsW UvsW helicase; P 99.8 1.4E-19 3.1E-24 159.8 12.2 149 34-206 113-262 (501)
69 PRK12899 secA preprotein trans 99.8 1.4E-19 3E-24 164.5 12.3 143 21-172 70-229 (970)
70 KOG0354|consensus 99.8 4.7E-19 1E-23 157.4 12.1 155 45-210 73-228 (746)
71 COG1202 Superfamily II helicas 99.8 2.4E-18 5.1E-23 147.7 15.3 177 21-204 202-383 (830)
72 cd00046 DEXDc DEAD-like helica 99.8 6.7E-18 1.5E-22 123.4 15.7 144 50-203 1-144 (144)
73 PRK13766 Hef nuclease; Provisi 99.8 2.2E-18 4.7E-23 159.8 15.8 168 36-214 16-186 (773)
74 PRK05580 primosome assembly pr 99.8 1.5E-17 3.2E-22 151.3 15.3 159 35-211 144-312 (679)
75 COG4581 Superfamily II RNA hel 99.8 1.2E-17 2.5E-22 153.7 13.3 175 28-221 113-290 (1041)
76 COG0514 RecQ Superfamily II DN 99.7 1.1E-17 2.5E-22 146.7 9.8 171 30-215 12-188 (590)
77 TIGR03714 secA2 accessory Sec 99.7 3.7E-17 8E-22 147.5 10.3 151 17-172 48-209 (762)
78 TIGR00963 secA preprotein tran 99.7 7.3E-17 1.6E-21 144.9 11.8 146 18-172 35-190 (745)
79 TIGR00595 priA primosomal prot 99.7 3.5E-16 7.6E-21 137.9 14.7 141 53-211 1-147 (505)
80 KOG0951|consensus 99.7 5.8E-17 1.3E-21 148.8 9.5 176 32-211 306-494 (1674)
81 PRK09694 helicase Cas3; Provis 99.7 2.6E-16 5.7E-21 145.2 13.6 171 35-212 286-489 (878)
82 PRK09200 preprotein translocas 99.7 1.7E-16 3.7E-21 144.3 11.1 145 18-171 57-212 (790)
83 KOG0349|consensus 99.7 1.1E-16 2.4E-21 133.6 9.0 139 81-225 286-433 (725)
84 PRK11131 ATP-dependent RNA hel 99.7 7.7E-16 1.7E-20 145.4 14.9 156 45-226 85-248 (1294)
85 PRK12898 secA preprotein trans 99.7 3.3E-16 7.2E-21 139.8 11.6 146 17-171 81-255 (656)
86 PF04851 ResIII: Type III rest 99.7 2.6E-16 5.6E-21 120.9 9.2 141 49-205 25-184 (184)
87 PRK13104 secA preprotein trans 99.7 6.3E-16 1.4E-20 140.9 11.7 144 18-171 61-215 (896)
88 KOG0947|consensus 99.6 1.8E-15 4E-20 136.1 9.8 165 35-221 297-464 (1248)
89 TIGR01967 DEAH_box_HrpA ATP-de 99.6 4.8E-14 1E-18 133.7 15.9 177 30-226 59-241 (1283)
90 COG1061 SSL2 DNA or RNA helica 99.6 1.1E-14 2.4E-19 126.7 9.6 146 35-206 36-186 (442)
91 TIGR00603 rad25 DNA repair hel 99.6 2.7E-14 5.8E-19 129.0 11.3 149 35-205 255-413 (732)
92 PF07652 Flavi_DEAD: Flaviviru 99.6 2E-14 4.3E-19 104.5 8.3 141 48-210 3-143 (148)
93 PRK12904 preprotein translocas 99.5 4E-14 8.7E-19 128.9 10.9 145 17-171 59-214 (830)
94 PRK11448 hsdR type I restricti 99.5 2.3E-13 5E-18 129.1 14.5 163 36-206 414-597 (1123)
95 KOG0948|consensus 99.5 4.9E-14 1.1E-18 124.4 9.3 165 35-221 129-296 (1041)
96 PRK13107 preprotein translocas 99.5 1E-13 2.2E-18 126.4 11.5 147 17-173 60-217 (908)
97 KOG0353|consensus 99.5 9.2E-14 2E-18 114.7 9.4 171 30-213 89-270 (695)
98 KOG0351|consensus 99.5 1.8E-14 4E-19 133.1 5.3 176 27-215 256-442 (941)
99 KOG0352|consensus 99.5 7.7E-14 1.7E-18 116.6 8.3 177 31-221 15-206 (641)
100 COG4098 comFA Superfamily II D 99.5 4.9E-13 1.1E-17 109.0 12.7 152 35-213 97-253 (441)
101 TIGR00348 hsdR type I site-spe 99.5 2.3E-13 5E-18 123.9 11.2 140 49-204 263-403 (667)
102 COG1200 RecG RecG-like helicas 99.4 9.2E-13 2E-17 116.3 11.7 137 51-207 285-426 (677)
103 TIGR03117 cas_csf4 CRISPR-asso 99.4 1.2E-12 2.6E-17 117.3 12.4 57 47-105 14-70 (636)
104 KOG0949|consensus 99.4 1.1E-12 2.3E-17 118.9 10.9 193 9-213 479-683 (1330)
105 COG1643 HrpA HrpA-like helicas 99.4 5.9E-12 1.3E-16 115.4 15.2 162 45-226 61-225 (845)
106 TIGR01407 dinG_rel DnaQ family 99.4 2.3E-12 5E-17 120.6 12.5 142 25-173 236-455 (850)
107 COG1203 CRISPR-associated heli 99.4 2.9E-12 6.2E-17 118.0 11.5 168 51-222 216-399 (733)
108 COG1198 PriA Primosomal protei 99.4 4.8E-12 1E-16 114.4 11.1 155 35-207 198-363 (730)
109 PRK07246 bifunctional ATP-depe 99.4 4.9E-12 1.1E-16 117.4 11.3 121 45-173 260-451 (820)
110 COG1110 Reverse gyrase [DNA re 99.3 1.7E-11 3.7E-16 111.9 11.9 142 25-174 72-219 (1187)
111 COG1197 Mfd Transcription-repa 99.3 2.7E-11 5.8E-16 112.6 11.9 152 51-222 617-771 (1139)
112 KOG0950|consensus 99.3 1.7E-11 3.7E-16 111.2 9.9 174 30-214 218-400 (1008)
113 COG4096 HsdR Type I site-speci 99.3 8.9E-12 1.9E-16 111.8 8.0 149 50-220 186-338 (875)
114 KOG0920|consensus 99.2 2.9E-10 6.4E-15 104.5 15.2 165 45-226 184-349 (924)
115 smart00489 DEXDc3 DEAD-like he 99.2 3E-11 6.6E-16 99.7 7.9 60 45-104 23-84 (289)
116 smart00488 DEXDc2 DEAD-like he 99.2 3E-11 6.6E-16 99.7 7.9 60 45-104 23-84 (289)
117 PRK13103 secA preprotein trans 99.2 6E-11 1.3E-15 108.7 9.5 145 18-171 61-215 (913)
118 KOG0922|consensus 99.2 2.8E-10 6.1E-15 100.1 13.2 162 45-226 62-225 (674)
119 PRK08074 bifunctional ATP-depe 99.1 1.9E-10 4.1E-15 108.5 10.1 52 45-99 272-323 (928)
120 PF00176 SNF2_N: SNF2 family N 99.1 1.7E-09 3.6E-14 89.3 14.4 145 47-204 23-173 (299)
121 PRK04914 ATP-dependent helicas 99.1 5.5E-10 1.2E-14 104.5 12.0 162 35-205 152-317 (956)
122 PRK12906 secA preprotein trans 99.1 2E-10 4.2E-15 104.8 8.2 146 17-171 58-213 (796)
123 PRK12902 secA preprotein trans 99.1 7.7E-10 1.7E-14 101.2 11.9 146 17-171 63-218 (939)
124 KOG0951|consensus 99.1 4.8E-10 1E-14 104.2 10.4 156 31-204 1139-1300(1674)
125 PRK12326 preprotein translocas 99.1 9.9E-10 2.2E-14 98.7 11.1 146 17-171 56-211 (764)
126 PRK11747 dinG ATP-dependent DN 99.1 1.9E-09 4.1E-14 98.9 12.0 48 49-99 49-96 (697)
127 CHL00122 secA preprotein trans 99.0 9.1E-10 2E-14 100.6 9.7 146 18-171 55-209 (870)
128 PF07517 SecA_DEAD: SecA DEAD- 99.0 7.9E-10 1.7E-14 89.5 7.8 144 19-171 57-210 (266)
129 PRK15483 type III restriction- 99.0 7.4E-09 1.6E-13 96.1 12.3 147 49-205 59-240 (986)
130 PLN03142 Probable chromatin-re 99.0 7.9E-09 1.7E-13 97.3 12.1 143 47-204 186-330 (1033)
131 PRK14873 primosome assembly pr 98.9 6.1E-09 1.3E-13 94.6 9.9 142 53-211 164-311 (665)
132 TIGR02562 cas3_yersinia CRISPR 98.9 1.1E-08 2.3E-13 95.2 11.4 157 49-211 431-642 (1110)
133 COG0610 Type I site-specific r 98.9 3.6E-08 7.8E-13 93.2 12.7 142 48-203 272-413 (962)
134 KOG0952|consensus 98.9 2.5E-09 5.4E-14 98.2 4.7 138 30-173 922-1061(1230)
135 TIGR00604 rad3 DNA repair heli 98.8 1.2E-08 2.6E-13 94.0 8.9 72 33-105 8-84 (705)
136 COG3587 Restriction endonuclea 98.8 2.6E-08 5.6E-13 90.0 8.0 150 49-209 74-248 (985)
137 KOG0926|consensus 98.7 6.4E-08 1.4E-12 87.1 9.4 144 49-203 271-424 (1172)
138 KOG0923|consensus 98.7 2.4E-07 5.2E-12 81.9 12.8 162 46-226 277-440 (902)
139 COG1199 DinG Rad3-related DNA 98.7 3.7E-08 8.1E-13 90.3 7.3 71 31-104 11-86 (654)
140 KOG0924|consensus 98.7 2.3E-07 5E-12 82.3 11.4 159 47-226 369-530 (1042)
141 PRK12903 secA preprotein trans 98.7 1.1E-07 2.3E-12 87.2 9.3 145 18-171 57-211 (925)
142 PF13086 AAA_11: AAA domain; P 98.7 4.6E-08 9.9E-13 77.7 6.3 68 36-103 2-75 (236)
143 KOG0925|consensus 98.6 8.7E-08 1.9E-12 82.0 7.6 161 45-225 58-220 (699)
144 PF02399 Herpes_ori_bp: Origin 98.6 1.3E-06 2.8E-11 79.6 13.7 157 50-222 50-210 (824)
145 KOG0385|consensus 98.5 2E-06 4.4E-11 77.3 11.6 155 46-215 183-343 (971)
146 PRK12900 secA preprotein trans 98.5 3.9E-07 8.4E-12 84.6 6.8 126 37-171 140-271 (1025)
147 PF09848 DUF2075: Uncharacteri 98.4 1.3E-06 2.7E-11 74.4 8.5 112 50-188 2-117 (352)
148 PF02562 PhoH: PhoH-like prote 98.4 2.1E-07 4.6E-12 72.6 3.0 143 35-202 4-155 (205)
149 PRK12901 secA preprotein trans 98.3 7.4E-07 1.6E-11 83.0 6.0 127 36-171 170-303 (1112)
150 KOG1123|consensus 98.3 3.6E-07 7.9E-12 78.6 2.7 135 50-206 321-461 (776)
151 PF13245 AAA_19: Part of AAA d 98.3 4.1E-06 8.9E-11 55.0 6.7 53 49-101 10-62 (76)
152 PF13604 AAA_30: AAA domain; P 98.3 3E-06 6.5E-11 66.1 7.1 124 36-202 2-130 (196)
153 PRK10536 hypothetical protein; 98.2 5.5E-06 1.2E-10 66.7 8.1 142 35-202 59-212 (262)
154 PF13872 AAA_34: P-loop contai 98.2 1.7E-05 3.8E-10 64.9 10.3 151 49-210 62-227 (303)
155 PRK12723 flagellar biosynthesi 98.2 7.9E-05 1.7E-09 63.9 14.7 135 49-215 174-310 (388)
156 PF06862 DUF1253: Protein of u 98.2 2.9E-05 6.2E-10 67.2 11.1 137 77-217 33-239 (442)
157 KOG0387|consensus 98.1 1.7E-05 3.6E-10 71.8 9.9 143 47-204 222-376 (923)
158 PRK06526 transposase; Provisio 98.1 3.5E-05 7.6E-10 62.5 10.8 129 45-224 94-232 (254)
159 KOG0390|consensus 98.1 4.8E-05 1E-09 69.6 12.7 152 50-213 264-425 (776)
160 PRK08181 transposase; Validate 98.1 3.2E-05 7E-10 63.2 10.5 129 45-224 102-240 (269)
161 KOG0989|consensus 98.0 3E-05 6.5E-10 63.4 8.6 58 152-214 123-183 (346)
162 KOG1803|consensus 98.0 1.1E-05 2.3E-10 71.1 6.1 68 31-102 181-250 (649)
163 KOG1132|consensus 98.0 4.1E-05 8.8E-10 70.1 9.6 42 130-172 220-261 (945)
164 PRK10875 recD exonuclease V su 98.0 4.6E-05 1E-09 69.0 9.9 142 38-202 155-301 (615)
165 KOG0389|consensus 98.0 2.1E-05 4.6E-10 71.1 7.5 150 49-211 418-571 (941)
166 COG4889 Predicted helicase [Ge 98.0 2.1E-05 4.5E-10 72.2 6.8 130 34-172 160-318 (1518)
167 TIGR01447 recD exodeoxyribonuc 98.0 7.1E-05 1.5E-09 67.6 10.3 140 39-202 149-295 (586)
168 KOG1802|consensus 97.9 3.3E-05 7E-10 68.9 7.8 76 27-105 402-478 (935)
169 PRK00149 dnaA chromosomal repl 97.9 0.00016 3.4E-09 63.6 11.9 111 50-208 149-259 (450)
170 cd00009 AAA The AAA+ (ATPases 97.9 0.00025 5.4E-09 51.4 11.2 26 48-74 18-43 (151)
171 PF13401 AAA_22: AAA domain; P 97.9 1.9E-05 4E-10 57.1 5.0 22 48-69 3-24 (131)
172 COG1419 FlhF Flagellar GTP-bin 97.9 0.00097 2.1E-08 56.9 15.3 136 49-218 203-339 (407)
173 PRK08727 hypothetical protein; 97.9 0.00024 5.2E-09 56.9 11.2 49 157-207 92-140 (233)
174 PRK08116 hypothetical protein; 97.9 0.00026 5.7E-09 57.9 11.6 113 50-209 115-227 (268)
175 PRK14087 dnaA chromosomal repl 97.8 0.00017 3.7E-09 63.3 10.5 112 50-207 142-253 (450)
176 PF00308 Bac_DnaA: Bacterial d 97.8 4E-05 8.7E-10 60.8 5.9 110 50-207 35-144 (219)
177 PF00580 UvrD-helicase: UvrD/R 97.8 3.8E-05 8.2E-10 63.7 6.0 70 37-107 2-71 (315)
178 PRK14088 dnaA chromosomal repl 97.8 0.00028 6E-09 61.9 11.5 116 50-212 131-246 (440)
179 PRK14722 flhF flagellar biosyn 97.8 0.00047 1E-08 58.8 12.5 135 46-215 134-270 (374)
180 KOG4439|consensus 97.8 7E-05 1.5E-09 67.1 7.0 119 51-173 347-478 (901)
181 KOG1000|consensus 97.8 0.00025 5.5E-09 61.4 10.1 151 33-203 196-348 (689)
182 TIGR00362 DnaA chromosomal rep 97.8 0.00032 6.9E-09 60.9 11.0 112 50-209 137-248 (405)
183 PRK12422 chromosomal replicati 97.7 0.00044 9.5E-09 60.6 11.5 109 50-208 142-250 (445)
184 PRK14086 dnaA chromosomal repl 97.7 0.00041 8.9E-09 62.5 11.0 125 51-223 316-443 (617)
185 PRK06893 DNA replication initi 97.7 0.00027 5.9E-09 56.5 8.4 46 157-204 90-135 (229)
186 PRK06835 DNA replication prote 97.6 0.00081 1.7E-08 56.6 11.1 129 48-224 182-315 (329)
187 TIGR01448 recD_rel helicase, p 97.6 0.00058 1.3E-08 63.4 11.1 127 34-202 322-452 (720)
188 COG0653 SecA Preprotein transl 97.6 0.00019 4E-09 66.2 7.5 125 39-171 84-213 (822)
189 KOG1002|consensus 97.6 0.0003 6.6E-09 61.0 8.3 135 53-204 208-355 (791)
190 PRK08084 DNA replication initi 97.6 0.00061 1.3E-08 54.7 9.6 46 159-206 98-144 (235)
191 PF03354 Terminase_1: Phage Te 97.6 0.0004 8.6E-09 61.6 9.2 137 50-199 23-159 (477)
192 PRK05642 DNA replication initi 97.6 0.0005 1.1E-08 55.1 9.0 47 158-206 97-143 (234)
193 KOG0391|consensus 97.6 0.00027 5.9E-09 66.8 8.1 164 20-204 611-776 (1958)
194 PRK06921 hypothetical protein; 97.6 0.0012 2.6E-08 54.0 11.0 45 48-96 116-160 (266)
195 PRK04296 thymidine kinase; Pro 97.6 0.00032 7E-09 54.4 7.2 37 49-89 2-38 (190)
196 KOG2340|consensus 97.6 8.1E-05 1.8E-09 64.8 4.1 181 33-217 214-493 (698)
197 PRK05703 flhF flagellar biosyn 97.5 0.0037 8E-08 54.5 14.3 135 47-216 219-356 (424)
198 smart00382 AAA ATPases associa 97.5 0.00069 1.5E-08 48.5 8.2 42 49-94 2-43 (148)
199 cd01124 KaiC KaiC is a circadi 97.5 0.0002 4.3E-09 55.0 5.5 48 52-104 2-49 (187)
200 PRK12377 putative replication 97.5 0.0018 3.8E-08 52.4 11.1 111 49-208 101-211 (248)
201 PRK11889 flhF flagellar biosyn 97.5 0.0031 6.8E-08 54.1 12.9 134 49-216 241-376 (436)
202 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.0014 3.1E-08 51.9 10.3 21 48-68 37-57 (226)
203 TIGR02881 spore_V_K stage V sp 97.5 0.0016 3.5E-08 53.0 10.8 21 48-68 41-61 (261)
204 KOG0991|consensus 97.5 0.0003 6.5E-09 55.7 6.0 48 152-204 107-154 (333)
205 CHL00181 cbbX CbbX; Provisiona 97.5 0.0031 6.7E-08 52.2 12.4 22 48-69 58-79 (287)
206 cd01120 RecA-like_NTPases RecA 97.5 0.0018 3.9E-08 48.0 10.0 49 156-204 83-138 (165)
207 COG0593 DnaA ATPase involved i 97.5 0.0036 7.8E-08 53.9 12.8 65 158-224 175-242 (408)
208 PF00448 SRP54: SRP54-type pro 97.4 0.0026 5.6E-08 49.6 10.9 132 51-213 3-135 (196)
209 PRK08903 DnaA regulatory inact 97.4 0.0019 4E-08 51.4 10.3 44 158-205 90-133 (227)
210 PLN03025 replication factor C 97.4 0.0022 4.8E-08 53.8 11.2 41 157-202 98-138 (319)
211 PRK07952 DNA replication prote 97.4 0.0027 5.8E-08 51.2 11.2 53 156-210 160-212 (244)
212 PRK09183 transposase/IS protei 97.4 0.0057 1.2E-07 49.8 13.0 46 46-96 99-144 (259)
213 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.001 2.2E-08 53.4 8.6 54 47-105 19-72 (237)
214 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0014 2.9E-08 61.2 9.9 123 35-202 352-476 (744)
215 PF14617 CMS1: U3-containing 9 97.4 0.00029 6.4E-09 56.7 4.8 88 79-168 124-211 (252)
216 PF01695 IstB_IS21: IstB-like 97.4 0.00026 5.5E-09 54.4 4.3 48 45-97 43-90 (178)
217 PRK14974 cell division protein 97.4 0.0043 9.4E-08 52.4 12.0 131 50-214 141-275 (336)
218 PRK13889 conjugal transfer rel 97.3 0.0013 2.9E-08 62.6 9.6 123 35-202 346-470 (988)
219 TIGR02880 cbbX_cfxQ probable R 97.3 0.0046 1E-07 51.1 11.8 19 48-66 57-75 (284)
220 PRK07003 DNA polymerase III su 97.3 0.0021 4.5E-08 59.3 10.4 39 157-200 118-156 (830)
221 KOG1131|consensus 97.3 0.0014 3E-08 57.4 8.9 61 47-107 33-93 (755)
222 PRK00411 cdc6 cell division co 97.3 0.0026 5.7E-08 54.8 10.7 36 50-87 56-91 (394)
223 KOG0921|consensus 97.3 0.0011 2.5E-08 61.2 8.4 158 49-223 393-552 (1282)
224 PRK14956 DNA polymerase III su 97.3 0.0018 3.9E-08 56.9 9.4 20 50-69 41-60 (484)
225 PF05729 NACHT: NACHT domain 97.3 0.0057 1.2E-07 45.5 11.0 61 161-224 84-148 (166)
226 PRK11773 uvrD DNA-dependent he 97.3 0.00044 9.5E-09 64.4 5.8 72 33-105 7-78 (721)
227 TIGR01075 uvrD DNA helicase II 97.3 0.00055 1.2E-08 63.7 6.2 72 33-105 2-73 (715)
228 PF13177 DNA_pol3_delta2: DNA 97.2 0.0064 1.4E-07 45.9 10.7 44 156-204 100-143 (162)
229 KOG0734|consensus 97.2 0.0018 3.9E-08 57.0 8.4 67 158-224 396-469 (752)
230 PRK14964 DNA polymerase III su 97.2 0.0056 1.2E-07 54.2 11.6 40 156-200 114-153 (491)
231 COG1875 NYN ribonuclease and A 97.2 0.00077 1.7E-08 56.6 5.8 45 52-97 248-292 (436)
232 PRK14958 DNA polymerase III su 97.2 0.004 8.7E-08 55.6 10.7 39 157-200 118-156 (509)
233 PF05127 Helicase_RecD: Helica 97.2 0.00022 4.7E-09 54.5 2.3 124 53-204 1-124 (177)
234 PRK07764 DNA polymerase III su 97.2 0.0038 8.1E-08 58.7 10.5 44 156-205 118-161 (824)
235 PTZ00112 origin recognition co 97.2 0.009 1.9E-07 56.1 12.6 42 157-202 868-909 (1164)
236 PRK14960 DNA polymerase III su 97.2 0.0041 8.8E-08 56.6 10.3 39 157-200 117-155 (702)
237 TIGR01547 phage_term_2 phage t 97.2 0.0049 1.1E-07 53.3 10.5 137 51-205 3-142 (396)
238 PRK12323 DNA polymerase III su 97.1 0.0032 7E-08 57.2 9.5 42 156-202 122-163 (700)
239 PF12340 DUF3638: Protein of u 97.1 0.00048 1E-08 54.5 3.8 123 47-173 39-187 (229)
240 PF05970 PIF1: PIF1-like helic 97.1 0.00089 1.9E-08 57.3 5.7 47 47-97 20-66 (364)
241 PRK06645 DNA polymerase III su 97.1 0.008 1.7E-07 53.5 11.6 20 50-69 44-63 (507)
242 PHA03333 putative ATPase subun 97.1 0.01 2.3E-07 54.0 12.2 137 48-203 186-332 (752)
243 PRK00771 signal recognition pa 97.1 0.026 5.6E-07 49.4 14.3 132 50-215 96-229 (437)
244 COG3421 Uncharacterized protei 97.1 0.0031 6.8E-08 56.1 8.5 147 54-214 2-175 (812)
245 PRK04328 hypothetical protein; 97.1 0.0066 1.4E-07 49.1 10.0 54 47-105 21-74 (249)
246 PF13173 AAA_14: AAA domain 97.1 0.0091 2E-07 43.0 9.8 39 158-203 61-99 (128)
247 TIGR02928 orc1/cdc6 family rep 97.1 0.0021 4.6E-08 54.8 7.5 18 50-67 41-58 (365)
248 TIGR00376 DNA helicase, putati 97.1 0.0012 2.6E-08 60.4 6.2 65 35-103 157-223 (637)
249 PHA03368 DNA packaging termina 97.1 0.011 2.4E-07 53.6 12.0 143 48-212 253-400 (738)
250 KOG0739|consensus 97.1 0.014 2.9E-07 48.2 11.4 124 50-223 167-298 (439)
251 PF05621 TniB: Bacterial TniB 97.1 0.0022 4.7E-08 52.9 7.0 97 50-174 62-161 (302)
252 KOG0392|consensus 97.1 0.0058 1.3E-07 58.4 10.5 141 49-204 994-1139(1549)
253 COG1484 DnaC DNA replication p 97.1 0.006 1.3E-07 49.5 9.6 52 45-101 101-152 (254)
254 PRK08939 primosomal protein Dn 97.1 0.0086 1.9E-07 50.0 10.7 54 156-211 215-269 (306)
255 PF00004 AAA: ATPase family as 97.0 0.0034 7.4E-08 44.9 7.3 63 159-223 59-130 (132)
256 COG0470 HolB ATPase involved i 97.0 0.0071 1.5E-07 50.5 10.2 46 156-207 107-152 (325)
257 COG0556 UvrB Helicase subunit 97.0 0.002 4.3E-08 56.6 6.7 55 50-111 33-87 (663)
258 KOG0953|consensus 97.0 0.0022 4.9E-08 56.5 7.0 100 49-173 191-290 (700)
259 PRK12402 replication factor C 97.0 0.0044 9.6E-08 52.1 8.8 40 157-201 124-163 (337)
260 PRK14723 flhF flagellar biosyn 97.0 0.014 2.9E-07 54.3 12.3 133 48-215 184-318 (767)
261 TIGR01074 rep ATP-dependent DN 97.0 0.0018 4E-08 59.7 6.7 89 36-147 2-90 (664)
262 TIGR00678 holB DNA polymerase 97.0 0.015 3.2E-07 44.8 10.7 40 156-200 94-133 (188)
263 PRK14961 DNA polymerase III su 97.0 0.012 2.5E-07 50.4 10.9 39 157-200 118-156 (363)
264 PRK08691 DNA polymerase III su 97.0 0.011 2.4E-07 54.2 11.2 39 157-200 118-156 (709)
265 TIGR00596 rad1 DNA repair prot 97.0 0.0032 7E-08 58.9 8.0 83 131-219 6-94 (814)
266 PRK08533 flagellar accessory p 96.9 0.0055 1.2E-07 49.0 8.3 53 47-104 22-74 (230)
267 PRK13826 Dtr system oriT relax 96.9 0.0076 1.7E-07 58.1 10.4 123 35-202 381-505 (1102)
268 PRK06731 flhF flagellar biosyn 96.9 0.032 7E-07 45.7 12.8 132 49-216 75-210 (270)
269 PRK09111 DNA polymerase III su 96.9 0.0088 1.9E-07 54.4 10.4 40 156-200 130-169 (598)
270 KOG0388|consensus 96.9 0.0029 6.3E-08 57.4 7.0 143 47-207 584-737 (1185)
271 COG1474 CDC6 Cdc6-related prot 96.9 0.014 2.9E-07 50.0 10.9 45 156-204 121-165 (366)
272 PHA02544 44 clamp loader, smal 96.9 0.01 2.3E-07 49.5 10.1 40 158-201 100-139 (316)
273 PRK11054 helD DNA helicase IV; 96.9 0.002 4.3E-08 59.5 5.8 72 34-106 195-266 (684)
274 COG2256 MGS1 ATPase related to 96.9 0.0055 1.2E-07 52.2 7.9 19 50-68 49-67 (436)
275 PRK14949 DNA polymerase III su 96.9 0.0092 2E-07 56.1 9.9 44 157-206 118-161 (944)
276 TIGR01073 pcrA ATP-dependent D 96.9 0.0016 3.5E-08 60.7 5.1 71 34-105 3-73 (726)
277 PRK14962 DNA polymerase III su 96.8 0.017 3.7E-07 51.1 11.0 19 50-68 37-55 (472)
278 PRK14951 DNA polymerase III su 96.8 0.014 2.9E-07 53.3 10.5 42 157-204 123-164 (618)
279 COG1222 RPT1 ATP-dependent 26S 96.8 0.014 3E-07 49.2 9.5 44 158-203 244-298 (406)
280 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.015 3.3E-07 46.2 9.7 53 47-104 18-70 (229)
281 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.004 8.7E-08 50.7 6.4 39 47-89 34-72 (259)
282 PF03969 AFG1_ATPase: AFG1-lik 96.8 0.012 2.5E-07 50.3 9.3 112 48-207 61-172 (362)
283 COG0553 HepA Superfamily II DN 96.7 0.0048 1E-07 58.4 7.6 145 49-203 358-510 (866)
284 PRK08451 DNA polymerase III su 96.7 0.024 5.2E-07 50.8 11.4 40 156-200 115-154 (535)
285 KOG0386|consensus 96.7 0.0023 5E-08 59.8 5.1 152 48-215 412-570 (1157)
286 PRK00440 rfc replication facto 96.7 0.029 6.3E-07 46.7 11.4 39 158-201 102-140 (319)
287 PRK12727 flagellar biosynthesi 96.7 0.05 1.1E-06 48.6 13.1 135 45-215 346-482 (559)
288 PRK14969 DNA polymerase III su 96.7 0.022 4.7E-07 51.2 11.1 40 156-200 117-156 (527)
289 PRK10919 ATP-dependent DNA hel 96.7 0.0032 7E-08 58.2 5.9 70 36-106 3-72 (672)
290 PRK14721 flhF flagellar biosyn 96.7 0.054 1.2E-06 47.1 13.0 136 47-216 189-325 (420)
291 PRK14952 DNA polymerase III su 96.7 0.017 3.7E-07 52.3 10.3 45 156-206 116-160 (584)
292 PRK07994 DNA polymerase III su 96.7 0.013 2.8E-07 53.6 9.5 42 157-204 118-159 (647)
293 KOG1805|consensus 96.7 0.0033 7.1E-08 58.7 5.7 128 32-173 666-811 (1100)
294 PRK05563 DNA polymerase III su 96.7 0.024 5.3E-07 51.2 11.2 44 156-205 117-160 (559)
295 PRK14955 DNA polymerase III su 96.7 0.025 5.5E-07 49.0 10.9 40 156-200 125-164 (397)
296 KOG0738|consensus 96.7 0.02 4.4E-07 48.7 9.7 67 157-223 303-381 (491)
297 PRK13342 recombination factor 96.7 0.022 4.8E-07 49.6 10.5 18 50-67 37-54 (413)
298 PRK14957 DNA polymerase III su 96.6 0.02 4.4E-07 51.4 10.2 40 156-200 117-156 (546)
299 PRK13341 recombination factor 96.6 0.017 3.7E-07 53.7 9.9 39 158-205 109-147 (725)
300 KOG0384|consensus 96.6 0.014 2.9E-07 56.0 9.2 146 47-211 387-544 (1373)
301 PRK14965 DNA polymerase III su 96.6 0.028 6E-07 51.1 11.1 44 156-205 117-160 (576)
302 PF05496 RuvB_N: Holliday junc 96.6 0.015 3.1E-07 46.2 8.1 17 50-66 51-67 (233)
303 PRK11823 DNA repair protein Ra 96.6 0.026 5.7E-07 49.6 10.6 51 49-104 80-130 (446)
304 PF06745 KaiC: KaiC; InterPro 96.6 0.0041 9E-08 49.4 5.2 137 47-202 17-159 (226)
305 TIGR03499 FlhF flagellar biosy 96.6 0.013 2.9E-07 48.3 8.0 21 48-68 193-213 (282)
306 PRK12726 flagellar biosynthesi 96.6 0.048 1E-06 46.8 11.4 134 47-214 204-339 (407)
307 PRK14963 DNA polymerase III su 96.5 0.026 5.7E-07 50.4 10.0 19 50-68 37-55 (504)
308 PRK05973 replicative DNA helic 96.5 0.023 5E-07 45.6 8.7 72 28-104 33-114 (237)
309 PRK14959 DNA polymerase III su 96.5 0.027 5.9E-07 51.2 10.1 21 50-70 39-59 (624)
310 PRK04195 replication factor C 96.5 0.02 4.4E-07 50.9 9.3 42 158-202 98-139 (482)
311 PRK06067 flagellar accessory p 96.5 0.019 4.1E-07 45.9 8.3 53 47-104 23-75 (234)
312 PRK09112 DNA polymerase III su 96.5 0.05 1.1E-06 46.4 11.1 40 156-200 139-178 (351)
313 KOG0737|consensus 96.4 0.036 7.9E-07 46.8 9.7 65 160-224 188-261 (386)
314 cd01122 GP4d_helicase GP4d_hel 96.4 0.037 8E-07 45.1 9.8 52 46-101 27-78 (271)
315 PRK07940 DNA polymerase III su 96.4 0.051 1.1E-06 47.0 11.0 46 156-207 115-160 (394)
316 COG1444 Predicted P-loop ATPas 96.4 0.059 1.3E-06 49.9 11.8 126 50-204 232-357 (758)
317 TIGR02397 dnaX_nterm DNA polym 96.4 0.061 1.3E-06 45.6 11.4 24 50-74 37-60 (355)
318 cd00984 DnaB_C DnaB helicase C 96.4 0.012 2.6E-07 47.1 6.7 39 47-88 11-49 (242)
319 PRK14950 DNA polymerase III su 96.4 0.053 1.1E-06 49.4 11.5 39 156-199 118-156 (585)
320 PRK11331 5-methylcytosine-spec 96.4 0.032 7E-07 48.7 9.5 23 45-67 190-212 (459)
321 PRK05896 DNA polymerase III su 96.3 0.039 8.4E-07 50.0 10.1 45 157-207 118-162 (605)
322 KOG4150|consensus 96.3 0.0014 3.1E-08 57.9 1.1 179 29-211 280-469 (1034)
323 PHA02533 17 large terminase pr 96.3 0.034 7.4E-07 50.0 9.8 122 36-172 60-183 (534)
324 PRK07471 DNA polymerase III su 96.3 0.074 1.6E-06 45.5 11.4 42 156-202 139-180 (365)
325 TIGR02237 recomb_radB DNA repa 96.3 0.038 8.2E-07 43.2 9.1 40 47-90 10-49 (209)
326 PRK14948 DNA polymerase III su 96.3 0.049 1.1E-06 49.9 10.9 20 50-69 39-58 (620)
327 KOG0058|consensus 96.2 0.022 4.7E-07 52.0 8.0 129 45-190 490-651 (716)
328 PHA03372 DNA packaging termina 96.2 0.051 1.1E-06 48.9 10.0 134 48-204 201-338 (668)
329 PRK06305 DNA polymerase III su 96.2 0.052 1.1E-06 47.8 10.1 40 156-200 119-158 (451)
330 PRK14954 DNA polymerase III su 96.2 0.08 1.7E-06 48.5 11.4 40 156-200 125-164 (620)
331 KOG0742|consensus 96.2 0.011 2.4E-07 50.6 5.5 17 50-66 385-401 (630)
332 KOG0741|consensus 96.2 0.06 1.3E-06 47.8 10.1 50 158-207 598-653 (744)
333 PRK05707 DNA polymerase III su 96.2 0.047 1E-06 46.0 9.3 40 156-200 104-143 (328)
334 TIGR00635 ruvB Holliday juncti 96.1 0.046 1E-06 45.4 9.1 17 50-66 31-47 (305)
335 TIGR00064 ftsY signal recognit 96.1 0.33 7.1E-06 39.9 13.8 23 49-71 72-94 (272)
336 PRK14971 DNA polymerase III su 96.1 0.093 2E-06 48.1 11.5 40 156-200 119-158 (614)
337 PRK06995 flhF flagellar biosyn 96.1 0.25 5.5E-06 43.8 13.8 62 48-112 255-316 (484)
338 TIGR01425 SRP54_euk signal rec 96.1 0.2 4.3E-06 43.8 12.9 54 158-214 182-235 (429)
339 PHA00729 NTP-binding motif con 96.1 0.063 1.4E-06 42.7 9.1 75 135-215 61-140 (226)
340 COG3973 Superfamily I DNA and 96.0 0.014 3E-07 52.3 5.7 62 46-107 223-286 (747)
341 KOG2028|consensus 96.0 0.026 5.6E-07 47.8 7.0 50 51-104 164-213 (554)
342 TIGR00959 ffh signal recogniti 96.0 0.24 5.1E-06 43.4 13.2 22 51-72 101-122 (428)
343 PRK10263 DNA translocase FtsK; 96.0 0.039 8.4E-07 53.8 8.8 65 160-224 1142-1207(1355)
344 TIGR03689 pup_AAA proteasome A 96.0 0.099 2.1E-06 46.7 10.8 18 49-66 216-233 (512)
345 PRK09087 hypothetical protein; 96.0 0.047 1E-06 43.5 8.1 60 160-224 89-151 (226)
346 PRK06647 DNA polymerase III su 96.0 0.1 2.2E-06 47.3 11.0 44 156-205 117-160 (563)
347 KOG1001|consensus 95.9 0.091 2E-06 48.4 10.7 111 51-173 154-269 (674)
348 KOG1015|consensus 95.9 0.044 9.6E-07 51.6 8.5 146 49-203 696-859 (1567)
349 TIGR03346 chaperone_ClpB ATP-d 95.9 0.12 2.6E-06 49.3 11.8 19 49-67 194-212 (852)
350 COG4626 Phage terminase-like p 95.9 0.08 1.7E-06 47.1 9.7 134 51-201 88-223 (546)
351 cd03115 SRP The signal recogni 95.9 0.073 1.6E-06 40.3 8.5 18 52-69 3-20 (173)
352 PRK14712 conjugal transfer nic 95.9 0.037 8.1E-07 55.3 8.4 127 34-202 834-967 (1623)
353 PRK11034 clpA ATP-dependent Cl 95.8 0.054 1.2E-06 50.7 8.9 20 49-68 207-226 (758)
354 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.049 1.1E-06 43.1 7.6 52 48-104 15-66 (224)
355 TIGR02012 tigrfam_recA protein 95.8 0.075 1.6E-06 44.6 8.9 43 49-95 55-97 (321)
356 COG1132 MdlB ABC-type multidru 95.8 0.15 3.3E-06 46.3 11.6 32 156-190 481-512 (567)
357 cd01121 Sms Sms (bacterial rad 95.8 0.1 2.2E-06 44.9 9.8 51 49-104 82-132 (372)
358 COG1485 Predicted ATPase [Gene 95.8 0.085 1.8E-06 44.4 8.9 110 50-207 66-175 (367)
359 KOG0298|consensus 95.8 0.058 1.2E-06 52.1 8.8 150 45-204 370-551 (1394)
360 TIGR02760 TraI_TIGR conjugativ 95.8 0.084 1.8E-06 54.4 10.6 135 35-202 429-566 (1960)
361 PRK05986 cob(I)alamin adenolsy 95.8 0.049 1.1E-06 42.1 7.0 148 47-213 20-168 (191)
362 KOG0733|consensus 95.8 0.04 8.8E-07 49.6 7.3 52 156-207 602-659 (802)
363 TIGR02868 CydC thiol reductant 95.8 0.053 1.2E-06 48.7 8.4 64 47-117 359-422 (529)
364 cd00544 CobU Adenosylcobinamid 95.7 0.21 4.5E-06 37.9 10.4 116 52-202 2-125 (169)
365 TIGR03015 pepcterm_ATPase puta 95.7 0.085 1.8E-06 42.8 8.9 19 49-67 43-61 (269)
366 TIGR02655 circ_KaiC circadian 95.7 0.062 1.3E-06 47.8 8.6 54 47-105 261-314 (484)
367 TIGR02639 ClpA ATP-dependent C 95.7 0.071 1.5E-06 49.9 9.3 20 49-68 203-222 (731)
368 PRK13709 conjugal transfer nic 95.7 0.072 1.6E-06 53.9 9.7 128 34-202 966-1099(1747)
369 PRK12724 flagellar biosynthesi 95.7 0.35 7.6E-06 42.1 12.7 57 157-215 298-357 (432)
370 COG2805 PilT Tfp pilus assembl 95.7 0.015 3.2E-07 48.0 4.1 29 50-79 126-154 (353)
371 PRK06871 DNA polymerase III su 95.7 0.18 4E-06 42.4 10.9 41 156-201 105-145 (325)
372 PRK10867 signal recognition pa 95.7 0.28 6E-06 43.0 12.3 22 50-71 101-122 (433)
373 KOG0740|consensus 95.7 0.04 8.6E-07 47.7 7.0 66 158-223 245-319 (428)
374 PRK10865 protein disaggregatio 95.7 0.13 2.8E-06 49.0 11.0 20 49-68 199-218 (857)
375 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.099 2.1E-06 39.3 8.2 138 51-212 4-147 (159)
376 cd01393 recA_like RecA is a b 95.6 0.24 5.2E-06 39.1 10.8 45 47-91 17-63 (226)
377 PRK14970 DNA polymerase III su 95.6 0.13 2.7E-06 44.1 9.8 24 50-74 40-63 (367)
378 PRK07133 DNA polymerase III su 95.6 0.088 1.9E-06 48.8 9.1 46 156-207 116-161 (725)
379 PRK09361 radB DNA repair and r 95.5 0.073 1.6E-06 42.2 7.6 40 47-90 21-60 (225)
380 TIGR00708 cobA cob(I)alamin ad 95.5 0.078 1.7E-06 40.4 7.3 144 50-213 6-150 (173)
381 PRK13833 conjugal transfer pro 95.5 0.024 5.2E-07 47.6 5.0 48 45-94 140-187 (323)
382 COG1674 FtsK DNA segregation A 95.5 0.13 2.8E-06 49.1 10.2 64 160-223 641-704 (858)
383 PRK06090 DNA polymerase III su 95.5 0.21 4.6E-06 41.9 10.4 42 156-202 106-147 (319)
384 TIGR02782 TrbB_P P-type conjug 95.5 0.034 7.4E-07 46.3 5.7 48 45-94 128-175 (299)
385 PRK13851 type IV secretion sys 95.5 0.018 3.9E-07 48.8 4.0 45 45-94 158-202 (344)
386 TIGR02760 TraI_TIGR conjugativ 95.4 0.055 1.2E-06 55.7 7.9 126 34-202 1018-1149(1960)
387 PF03237 Terminase_6: Terminas 95.4 0.6 1.3E-05 39.3 13.3 147 53-218 1-154 (384)
388 PRK08058 DNA polymerase III su 95.3 0.16 3.5E-06 42.8 9.4 41 156-201 108-148 (329)
389 CHL00095 clpC Clp protease ATP 95.3 0.085 1.9E-06 50.1 8.5 20 49-68 200-219 (821)
390 cd00983 recA RecA is a bacter 95.3 0.13 2.8E-06 43.3 8.6 43 49-95 55-97 (325)
391 PHA00350 putative assembly pro 95.3 0.29 6.3E-06 42.3 10.9 25 52-76 4-29 (399)
392 TIGR03345 VI_ClpV1 type VI sec 95.3 0.21 4.6E-06 47.5 11.0 18 50-67 209-226 (852)
393 PRK07399 DNA polymerase III su 95.3 0.18 3.9E-06 42.3 9.4 41 156-202 122-162 (314)
394 TIGR01243 CDC48 AAA family ATP 95.3 0.38 8.3E-06 45.2 12.5 20 47-66 210-229 (733)
395 TIGR02785 addA_Gpos recombinat 95.2 0.048 1E-06 54.0 6.5 124 36-169 2-126 (1232)
396 PRK09354 recA recombinase A; P 95.2 0.16 3.6E-06 43.0 8.9 43 49-95 60-102 (349)
397 PRK14953 DNA polymerase III su 95.2 0.45 9.7E-06 42.4 12.0 19 51-69 40-58 (486)
398 CHL00176 ftsH cell division pr 95.1 0.51 1.1E-05 43.5 12.6 18 50-67 217-234 (638)
399 PRK07993 DNA polymerase III su 95.1 0.2 4.3E-06 42.4 9.3 41 156-201 106-146 (334)
400 PRK00080 ruvB Holliday junctio 95.1 0.14 2.9E-06 43.2 8.3 18 50-67 52-69 (328)
401 CHL00195 ycf46 Ycf46; Provisio 95.1 0.16 3.4E-06 45.2 8.9 19 48-66 258-276 (489)
402 PF05872 DUF853: Bacterial pro 95.1 0.061 1.3E-06 46.8 6.1 59 146-204 242-301 (502)
403 PRK13900 type IV secretion sys 95.1 0.031 6.8E-07 47.2 4.3 43 47-94 158-200 (332)
404 PRK06964 DNA polymerase III su 95.0 0.29 6.3E-06 41.5 9.9 42 156-202 130-171 (342)
405 COG2874 FlaH Predicted ATPases 95.0 0.62 1.4E-05 36.7 10.7 64 156-220 121-187 (235)
406 cd01123 Rad51_DMC1_radA Rad51_ 94.9 0.14 3E-06 40.8 7.5 44 47-90 17-62 (235)
407 cd01125 repA Hexameric Replica 94.9 0.92 2E-05 36.3 12.3 56 51-107 3-66 (239)
408 PRK08769 DNA polymerase III su 94.9 0.35 7.6E-06 40.6 10.1 42 156-202 111-152 (319)
409 COG1618 Predicted nucleotide k 94.9 0.093 2E-06 39.4 5.7 30 157-187 99-128 (179)
410 PF01637 Arch_ATPase: Archaeal 94.8 0.44 9.6E-06 37.2 10.2 59 139-203 105-165 (234)
411 COG4962 CpaF Flp pilus assembl 94.8 0.026 5.6E-07 47.4 3.1 61 31-96 153-215 (355)
412 TIGR00631 uvrb excinuclease AB 94.8 0.09 2E-06 48.5 6.8 51 50-107 30-80 (655)
413 PF05876 Terminase_GpA: Phage 94.8 0.077 1.7E-06 48.0 6.2 111 50-172 34-148 (557)
414 COG2255 RuvB Holliday junction 94.8 0.23 5E-06 40.8 8.2 40 140-189 91-130 (332)
415 PRK13894 conjugal transfer ATP 94.7 0.051 1.1E-06 45.7 4.7 46 46-93 145-190 (319)
416 COG1435 Tdk Thymidine kinase [ 94.7 0.49 1.1E-05 36.7 9.6 106 49-189 4-109 (201)
417 PF01443 Viral_helicase1: Vira 94.7 0.024 5.2E-07 45.0 2.7 15 52-66 1-15 (234)
418 PHA00012 I assembly protein 94.6 0.28 6.1E-06 41.2 8.6 61 155-216 78-140 (361)
419 TIGR03600 phage_DnaB phage rep 94.6 0.18 3.9E-06 44.1 8.0 39 47-88 192-230 (421)
420 PF00437 T2SE: Type II/IV secr 94.6 0.042 9.2E-07 44.8 3.9 42 48-93 126-167 (270)
421 PRK10416 signal recognition pa 94.6 2.2 4.8E-05 35.9 14.1 57 157-215 195-256 (318)
422 COG0464 SpoVK ATPases of the A 94.6 0.24 5.1E-06 44.2 8.9 56 158-213 335-397 (494)
423 TIGR01241 FtsH_fam ATP-depende 94.6 0.52 1.1E-05 42.1 10.9 17 50-66 89-105 (495)
424 COG1219 ClpX ATP-dependent pro 94.6 0.017 3.6E-07 48.0 1.3 21 47-67 95-115 (408)
425 PRK05748 replicative DNA helic 94.6 0.18 4E-06 44.4 7.9 50 48-101 202-251 (448)
426 PRK08699 DNA polymerase III su 94.5 0.65 1.4E-05 39.2 10.8 40 156-200 111-150 (325)
427 TIGR02203 MsbA_lipidA lipid A 94.5 0.12 2.7E-06 46.7 7.0 31 156-189 485-515 (571)
428 PRK06904 replicative DNA helic 94.5 0.19 4.2E-06 44.6 7.9 147 48-201 220-382 (472)
429 cd01126 TraG_VirD4 The TraG/Tr 94.4 0.038 8.2E-07 47.6 3.4 56 51-116 1-56 (384)
430 COG2909 MalT ATP-dependent tra 94.4 0.21 4.7E-06 46.6 8.1 46 156-205 127-172 (894)
431 PLN00020 ribulose bisphosphate 94.4 0.055 1.2E-06 46.2 4.0 17 50-66 149-165 (413)
432 PF02572 CobA_CobO_BtuR: ATP:c 94.3 0.38 8.2E-06 36.6 8.2 136 52-212 6-148 (172)
433 PF02534 T4SS-DNA_transf: Type 94.3 0.068 1.5E-06 47.2 4.8 57 50-116 45-101 (469)
434 TIGR00665 DnaB replicative DNA 94.3 0.16 3.5E-06 44.5 7.0 51 48-102 194-244 (434)
435 PF06733 DEAD_2: DEAD_2; Inte 94.3 0.023 5.1E-07 43.2 1.5 44 129-173 116-160 (174)
436 PRK13657 cyclic beta-1,2-gluca 94.3 0.096 2.1E-06 47.7 5.7 31 156-189 487-517 (588)
437 KOG0733|consensus 94.2 0.34 7.4E-06 43.9 8.8 56 159-214 283-349 (802)
438 COG2109 BtuR ATP:corrinoid ade 94.2 0.99 2.1E-05 34.8 10.2 145 51-213 30-175 (198)
439 KOG0652|consensus 94.2 0.25 5.4E-06 40.2 7.2 46 158-203 264-318 (424)
440 COG1136 SalX ABC-type antimicr 94.2 0.57 1.2E-05 37.3 9.2 54 156-213 158-211 (226)
441 PRK05564 DNA polymerase III su 94.2 0.71 1.5E-05 38.6 10.4 40 156-200 91-130 (313)
442 TIGR00602 rad24 checkpoint pro 94.2 0.49 1.1E-05 43.5 10.0 20 49-68 110-129 (637)
443 PRK05917 DNA polymerase III su 94.1 0.93 2E-05 37.5 10.7 42 156-202 93-134 (290)
444 COG0467 RAD55 RecA-superfamily 94.1 0.13 2.9E-06 41.7 5.7 56 47-107 21-76 (260)
445 PRK11174 cysteine/glutathione 94.1 0.082 1.8E-06 48.2 5.0 31 156-189 501-531 (588)
446 PF03796 DnaB_C: DnaB-like hel 94.1 0.053 1.2E-06 44.0 3.4 145 48-202 18-179 (259)
447 COG2812 DnaX DNA polymerase II 94.0 0.14 3E-06 45.6 6.1 21 153-173 114-134 (515)
448 TIGR02238 recomb_DMC1 meiotic 94.0 0.43 9.3E-06 40.0 8.7 54 49-102 96-152 (313)
449 TIGR00416 sms DNA repair prote 94.0 0.47 1E-05 41.9 9.3 52 48-104 93-144 (454)
450 PF12846 AAA_10: AAA-like doma 94.0 0.11 2.4E-06 42.6 5.1 45 157-203 219-263 (304)
451 COG1221 PspF Transcriptional r 94.0 0.64 1.4E-05 40.2 9.7 43 45-89 97-139 (403)
452 PRK11176 lipid transporter ATP 94.0 0.15 3.3E-06 46.3 6.4 41 156-200 496-536 (582)
453 TIGR01420 pilT_fam pilus retra 93.9 0.14 3E-06 43.5 5.6 43 48-93 121-163 (343)
454 COG2804 PulE Type II secretory 93.9 0.064 1.4E-06 47.2 3.6 26 50-76 259-284 (500)
455 TIGR03375 type_I_sec_LssB type 93.9 0.12 2.7E-06 48.0 5.7 31 156-189 617-647 (694)
456 KOG2170|consensus 93.8 0.17 3.7E-06 41.8 5.7 53 159-215 179-237 (344)
457 PRK08506 replicative DNA helic 93.8 0.38 8.3E-06 42.7 8.3 49 48-101 191-239 (472)
458 cd01128 rho_factor Transcripti 93.8 0.19 4.2E-06 40.6 6.0 29 46-75 13-41 (249)
459 KOG2228|consensus 93.7 0.89 1.9E-05 38.4 9.8 19 48-66 48-66 (408)
460 COG0630 VirB11 Type IV secreto 93.7 0.064 1.4E-06 44.9 3.2 56 33-93 125-182 (312)
461 PLN03187 meiotic recombination 93.7 0.25 5.4E-06 42.0 6.7 42 49-90 126-169 (344)
462 TIGR02857 CydD thiol reductant 93.7 0.17 3.6E-06 45.5 6.0 31 156-189 474-504 (529)
463 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.48 1E-05 34.8 7.4 48 156-210 86-133 (144)
464 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.15 3.2E-06 43.6 5.2 27 48-75 133-159 (358)
465 PRK10790 putative multidrug tr 93.5 0.12 2.7E-06 47.1 5.1 31 156-189 492-522 (592)
466 PRK09302 circadian clock prote 93.5 0.28 6E-06 44.0 7.1 53 47-104 271-323 (509)
467 PRK05800 cobU adenosylcobinami 93.4 1.4 3E-05 33.4 9.9 119 50-202 2-125 (170)
468 PRK08760 replicative DNA helic 93.4 0.46 9.9E-06 42.3 8.2 52 48-103 228-279 (476)
469 PRK11160 cysteine/glutathione 93.4 0.38 8.3E-06 43.8 8.0 46 156-206 491-536 (574)
470 COG3972 Superfamily I DNA and 93.4 0.43 9.4E-06 42.1 7.7 66 37-105 164-230 (660)
471 PRK13897 type IV secretion sys 93.4 0.15 3.2E-06 46.6 5.2 59 49-117 158-216 (606)
472 cd03239 ABC_SMC_head The struc 93.4 0.26 5.6E-06 37.7 5.9 41 157-200 115-155 (178)
473 cd01131 PilT Pilus retraction 93.4 0.15 3.2E-06 39.7 4.6 39 51-92 3-41 (198)
474 PLN03232 ABC transporter C fam 93.3 0.15 3.4E-06 51.5 5.7 31 156-189 1387-1417(1495)
475 PRK09165 replicative DNA helic 93.3 0.72 1.6E-05 41.3 9.3 25 49-73 217-241 (497)
476 cd03246 ABCC_Protease_Secretio 93.3 0.36 7.8E-06 36.5 6.5 43 156-202 112-154 (173)
477 TIGR00631 uvrb excinuclease AB 93.2 1.1 2.3E-05 41.6 10.5 115 79-207 440-557 (655)
478 TIGR02204 MsbA_rel ABC transpo 93.2 0.38 8.3E-06 43.7 7.7 31 156-189 492-522 (576)
479 PRK07414 cob(I)yrinic acid a,c 93.2 0.55 1.2E-05 35.9 7.3 146 50-212 22-167 (178)
480 PF01580 FtsK_SpoIIIE: FtsK/Sp 93.2 0.18 3.9E-06 39.3 4.9 29 47-75 36-64 (205)
481 COG0552 FtsY Signal recognitio 93.2 3.1 6.7E-05 35.1 12.1 131 51-213 141-279 (340)
482 cd03247 ABCC_cytochrome_bd The 93.2 1 2.3E-05 34.1 9.0 43 156-203 114-156 (178)
483 TIGR01193 bacteriocin_ABC ABC- 93.1 0.18 3.9E-06 47.1 5.5 31 156-189 627-657 (708)
484 cd03229 ABC_Class3 This class 93.1 0.22 4.9E-06 37.9 5.2 53 156-211 116-168 (178)
485 KOG0055|consensus 92.9 0.32 6.8E-06 47.5 6.8 34 156-192 1142-1175(1228)
486 KOG0057|consensus 92.9 1.8 3.9E-05 38.8 10.9 64 46-116 375-438 (591)
487 PF13481 AAA_25: AAA domain; P 92.9 0.47 1E-05 36.3 6.8 63 45-108 28-96 (193)
488 PF07088 GvpD: GvpD gas vesicl 92.9 0.38 8.2E-06 41.4 6.5 146 46-205 7-159 (484)
489 PRK07004 replicative DNA helic 92.8 0.48 1E-05 42.0 7.4 26 48-73 212-237 (460)
490 cd03240 ABC_Rad50 The catalyti 92.8 1.8 4E-05 33.7 10.0 42 157-201 138-181 (204)
491 COG1702 PhoH Phosphate starvat 92.8 0.034 7.4E-07 46.5 0.2 54 34-89 127-181 (348)
492 KOG0331|consensus 92.8 0.62 1.3E-05 41.5 7.9 94 59-167 322-418 (519)
493 COG3267 ExeA Type II secretory 92.7 0.27 5.9E-06 39.6 5.2 45 47-96 48-93 (269)
494 cd00267 ABC_ATPase ABC (ATP-bi 92.6 0.48 1.1E-05 35.1 6.3 49 158-210 98-146 (157)
495 KOG2035|consensus 92.6 1 2.2E-05 37.1 8.3 53 156-213 125-177 (351)
496 TIGR02788 VirB11 P-type DNA tr 92.5 0.16 3.4E-06 42.5 3.9 28 46-74 141-168 (308)
497 PRK04841 transcriptional regul 92.5 1 2.2E-05 43.1 9.8 43 158-204 121-163 (903)
498 TIGR01243 CDC48 AAA family ATP 92.5 1.3 2.7E-05 41.8 10.1 18 49-66 487-504 (733)
499 KOG0741|consensus 92.4 0.087 1.9E-06 46.8 2.2 17 50-66 257-273 (744)
500 PRK04301 radA DNA repair and r 92.4 0.36 7.8E-06 40.5 5.9 41 49-89 102-144 (317)
No 1
>KOG0331|consensus
Probab=100.00 E-value=1.2e-37 Score=267.04 Aligned_cols=201 Identities=30% Similarity=0.466 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-----CCCCCceEEEEcccH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-----PKNLGFRAVIVCPTR 91 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~~iil~Pt~ 91 (226)
+++..+.+.++...+|..|+|+|.+.| .+++|+|++..|.||||||++|++|++..+.. ....+|+++|++|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 556678888899999999999998887 88999999999999999999999999988864 244579999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
|||.|+...+.+++...+.+..+++|+...... .+.+..+.+|+|+||+++.+++.. +.++++++.++|+||||+|+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q-~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQ-LRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHH-HHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhh
Confidence 999999999999999988888888887654333 355778899999999999999999 89999999999999999999
Q ss_pred ccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 172 EAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++ +|..++..|+..++++..|++++|||+|.+++.++..|+.+|+.+++.
T Consensus 253 dm---GFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 253 DM---GFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred cc---ccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 99 799999999999977777999999999999999999999999999875
No 2
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-36 Score=267.90 Aligned_cols=200 Identities=32% Similarity=0.487 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCce-EEEEcccHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFR-AVIVCPTRELAK 95 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~-~iil~Pt~~L~~ 95 (226)
+.+.+.+++.+.+.+|..++|+|.++ |.++.|+|++..|+||||||++|++|+++.+......... ++|++||||||.
T Consensus 34 l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~ 113 (513)
T COG0513 34 LGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAV 113 (513)
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHH
Confidence 34678999999999999999999777 5889999999999999999999999999998632122112 999999999999
Q ss_pred HHHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 96 QTYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 96 q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
|+++.++.+..+. +.++..+.|+....... ..+..++||+|+||+++.+++.+ +.++++.++++|+||||+|++.
T Consensus 114 Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~-~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~- 189 (513)
T COG0513 114 QIAEELRKLGKNLGGLRVAVVYGGVSIRKQI-EALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDM- 189 (513)
T ss_pred HHHHHHHHHHhhcCCccEEEEECCCCHHHHH-HHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcC-
Confidence 9999999999998 78888888876655555 44445799999999999999998 6899999999999999999999
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|.+.+..++..+ ++..|+++||||+|+.+.++.++++++|+.+++.
T Consensus 190 --Gf~~~i~~I~~~~-p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~ 236 (513)
T COG0513 190 --GFIDDIEKILKAL-PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVS 236 (513)
T ss_pred --CCHHHHHHHHHhC-CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEc
Confidence 7999999999999 4589999999999999999999999999999886
No 3
>KOG0345|consensus
Probab=100.00 E-value=8e-37 Score=254.33 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCC--ceEEEEcccHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLG--FRAVIVCPTREL 93 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~--~~~iil~Pt~~L 93 (226)
++.+.++..+..+||+.+||+|..+ |.+++++|+++.++||||||++|++|+++.+... +.+. .-++|++|||||
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 4668999999999999999999666 6889999999999999999999999999998322 2222 368999999999
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 94 AKQTYNETVRLSEG-LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 94 ~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
|.|+.++...+... .+....++.|+....++......++++|+||||+++.+++++....+++.+++++|+||||++++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 99999999999887 56788888888887777777778999999999999999999866777788999999999999999
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
. +|...++.|+..+ +...++-+||||..+++.++....+.||+.++|..
T Consensus 172 m---gFe~~~n~ILs~L-PKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~ 220 (567)
T KOG0345|consen 172 M---GFEASVNTILSFL-PKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKE 220 (567)
T ss_pred c---cHHHHHHHHHHhc-ccccccccccchhhHHHHHHHHhhccCceeeeecc
Confidence 9 7999999999999 67888999999999999999999999999999864
No 4
>KOG0330|consensus
Probab=100.00 E-value=1.9e-36 Score=247.09 Aligned_cols=201 Identities=28% Similarity=0.383 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+.+.+..+.+.++.++..|+++|+++ |..+.|+|++..|.||||||.+|++|+++.+.+ .+..++++|++||||||.|
T Consensus 66 Lgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~Q 144 (476)
T KOG0330|consen 66 LGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQ 144 (476)
T ss_pred cCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHH
Confidence 56788999999999999999999777 688999999999999999999999999999985 4445899999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.++++.++...|.++..+.|+..- ......+.+.+||+|+||+++.+++.+- +.+++..++++|+||||+++++
T Consensus 145 I~e~fe~Lg~~iglr~~~lvGG~~m-~~q~~~L~kkPhilVaTPGrL~dhl~~T-kgf~le~lk~LVlDEADrlLd~--- 219 (476)
T KOG0330|consen 145 IAEQFEALGSGIGLRVAVLVGGMDM-MLQANQLSKKPHILVATPGRLWDHLENT-KGFSLEQLKFLVLDEADRLLDM--- 219 (476)
T ss_pred HHHHHHHhccccCeEEEEEecCchH-HHHHHHhhcCCCEEEeCcHHHHHHHHhc-cCccHHHhHHHhhchHHhhhhh---
Confidence 9999999999999999988887543 3333456788999999999999999732 7889999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
.|...+..|++.+ +...|.++||||+|+.+.++....+++|+.+.+..
T Consensus 220 dF~~~ld~ILk~i-p~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ 267 (476)
T KOG0330|consen 220 DFEEELDYILKVI-PRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSS 267 (476)
T ss_pred hhHHHHHHHHHhc-CccceEEEEEeecchhhHHHHhhccCCCeEEeccc
Confidence 7999999999999 68999999999999999999999999999998754
No 5
>KOG0338|consensus
Probab=100.00 E-value=1.4e-35 Score=249.00 Aligned_cols=202 Identities=33% Similarity=0.442 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTRELA 94 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~~L~ 94 (226)
+.|...+|.++...||..|+|+|... |..+.|+|+..+|.||||||.+|++|++.++.-. ....-|++|++|||+|+
T Consensus 186 mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 186 MNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred cccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 67788899999999999999999666 6788999999999999999999999999987422 22345899999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 95 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
-|++.+.+++..+..+.++...|+-... .+...+..+|||+|+||+++.+++.+. ..++++++..+|+||||+|++.
T Consensus 266 iQv~sV~~qlaqFt~I~~~L~vGGL~lk-~QE~~LRs~PDIVIATPGRlIDHlrNs-~sf~ldsiEVLvlDEADRMLee- 342 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDITVGLAVGGLDLK-AQEAVLRSRPDIVIATPGRLIDHLRNS-PSFNLDSIEVLVLDEADRMLEE- 342 (691)
T ss_pred HHHHHHHHHHHhhccceeeeeecCccHH-HHHHHHhhCCCEEEecchhHHHHhccC-CCccccceeEEEechHHHHHHH-
Confidence 9999999999999999999888875433 333457789999999999999999764 6788999999999999999999
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+|.+.++.|++.. +.+.|.++||||+.+++++++.--++.|+.|.+++
T Consensus 343 --gFademnEii~lc-pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~ 390 (691)
T KOG0338|consen 343 --GFADEMNEIIRLC-PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP 390 (691)
T ss_pred --HHHHHHHHHHHhc-cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC
Confidence 7999999999999 67999999999999999999999999999999875
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.2e-34 Score=247.64 Aligned_cols=202 Identities=24% Similarity=0.335 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC------CCCceEEEEccc
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK------NLGFRAVIVCPT 90 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~------~~~~~~iil~Pt 90 (226)
+.+.+.+++.+.+++|..++|+|+.+. .+++|+|++++||||||||++|++|+++.+.... ..+++++|++||
T Consensus 13 ~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 13 FALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 346788999999999999999997774 7889999999999999999999999998874321 235799999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc
Q psy12977 91 RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL 170 (226)
Q Consensus 91 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l 170 (226)
++||.|+.+.+..+.+..+.++..+.++....... ..+..+++|+|+||+++.+++.. ..+.+++++++|+||||++
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~-~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 99999999999999998898888777664433222 23456789999999999999987 6788999999999999999
Q ss_pred cccCccchHHHHHHHHHhcCC-CCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 171 FEAGVRGFRDQLAVIYAACSG-PNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 171 ~~~~~~~~~~~i~~i~~~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++. ++...+..+++.+++ ...|.+++|||++..+.+++..++.+|..+.+.+
T Consensus 170 ~~~---~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~ 222 (423)
T PRK04837 170 FDL---GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP 222 (423)
T ss_pred hhc---ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC
Confidence 998 688999999988854 3567899999999999999999999999988753
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3e-34 Score=254.65 Aligned_cols=199 Identities=29% Similarity=0.416 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTREL 93 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~~L 93 (226)
++.+.+++.+++.+|.+|+|+|.+++ .+++|+|+++.||||||||++|++|++..+... ...++++||++||++|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreL 215 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTREL 215 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHH
Confidence 45678999999999999999997775 888999999999999999999999998776432 2346799999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
|.|+.+.++.+....+.+.....++....... ..+..+++|+|+||++|.+++.. ...+++++++||+||||++++.
T Consensus 216 a~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~-~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 216 AEQIREQCNKFGASSKIRNTVAYGGVPKRGQI-YALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHHHhcccCccEEEEeCCCCHHHHH-HHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhhc
Confidence 99999999999988888887777665433322 23456789999999999999987 6778999999999999999998
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC-CCeEEecC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK-RRVQINVG 224 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~p~~i~~~ 224 (226)
+|...+..++..+ ++..|++++|||+|+++..+++.++. +|+.+.+.
T Consensus 293 ---gf~~~i~~il~~~-~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg 340 (545)
T PTZ00110 293 ---GFEPQIRKIVSQI-RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVG 340 (545)
T ss_pred ---chHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEEC
Confidence 6999999999888 67899999999999999999998885 68887654
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.7e-34 Score=249.28 Aligned_cols=199 Identities=26% Similarity=0.393 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
++.+++++.+.+.+|.+++|+|+++. .+++|+|++++||||||||++|++|+++.+.. ...+++++|++||++|+.|+
T Consensus 10 ~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 10 PLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTRELADQV 88 (460)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCHHHHHHH
Confidence 46789999999999999999998885 77899999999999999999999999998863 33356899999999999999
Q ss_pred HHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 98 YNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
.+.++.+.... +.++..+.|+....... ..+..+++|+|+||+++.+++.+ +.+.+++++++|+||||++++.
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~-~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~--- 162 (460)
T PRK11776 89 AKEIRRLARFIPNIKVLTLCGGVPMGPQI-DSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDM--- 162 (460)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCChHHHH-HHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCc---
Confidence 99999988765 57777777665443332 23447899999999999999987 6788999999999999999998
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+|...+..++..+ ++..|++++|||+|+.+..++..++.+|..+.+..
T Consensus 163 g~~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~ 210 (460)
T PRK11776 163 GFQDAIDAIIRQA-PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVES 210 (460)
T ss_pred CcHHHHHHHHHhC-CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECc
Confidence 6999999999888 67889999999999999999999999999887653
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.6e-34 Score=247.97 Aligned_cols=200 Identities=28% Similarity=0.402 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-----CCCceEEEEcccHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-----NLGFRAVIVCPTRE 92 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~~iil~Pt~~ 92 (226)
++.+.+++.+.+.+|..++|+|.++. .+++++|+++++|||+|||++|++|+++.+.... ....++||++||++
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptre 86 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHH
Confidence 46788999999999999999997775 7788999999999999999999999999885322 12358999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
||.|+.+.++.+.+..+.+...+.++....... ..+..+++|+|+||+++.++... ....++++++||+||||++++
T Consensus 87 La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 87 LAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM-MKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECCcCHHHHH-HHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 999999999999988888877766665433322 23456789999999999998876 677899999999999999999
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
. ++...+..++..+ +...|++++|||+++++.+++..++.+|..+.+.+
T Consensus 164 ~---~~~~~i~~il~~l-~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 212 (456)
T PRK10590 164 M---GFIHDIRRVLAKL-PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR 212 (456)
T ss_pred c---ccHHHHHHHHHhC-CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec
Confidence 8 6889999999888 56789999999999999999999999998887653
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-33 Score=249.96 Aligned_cols=198 Identities=29% Similarity=0.428 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC------CCCCCceEEEEcccH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG------PKNLGFRAVIVCPTR 91 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~------~~~~~~~~iil~Pt~ 91 (226)
++.+.+++.+.+.+|..++|+|.+++ .+++|+|+++.+|||||||++|++|++..+.. ....+++++|++||+
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTr 206 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTR 206 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCH
Confidence 46788999999999999999998775 77899999999999999999999999987632 123568999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
+||.|+.+.++.+.+..+.+.....++....... ..+..+++|+|+||+++.+++.. ....++++++||+||||+++
T Consensus 207 eLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~-~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 207 ELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL-YRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVLDEVDCML 283 (518)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEeecHHHHh
Confidence 9999999999999888887776666554333322 23456789999999999999987 57889999999999999999
Q ss_pred ccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 172 EAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+. +|...+..++..+ +..|++++|||+|+++..++..++.+++.+.+.
T Consensus 284 ~~---gf~~~i~~i~~~l--~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~ 331 (518)
T PLN00206 284 ER---GFRDQVMQIFQAL--SQPQVLLFSATVSPEVEKFASSLAKDIILISIG 331 (518)
T ss_pred hc---chHHHHHHHHHhC--CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 98 6888999998888 568999999999999999999999999988765
No 11
>KOG0342|consensus
Probab=100.00 E-value=8.4e-34 Score=237.44 Aligned_cols=202 Identities=30% Similarity=0.404 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcC---CCCCCceEEEEcccHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG---PKNLGFRAVIVCPTREL 93 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~---~~~~~~~~iil~Pt~~L 93 (226)
.++.+.++.++++++|.++|++|+.. +.++.|+|++..|.||+|||++|++|+.+.+.. ....+..++|+||||+|
T Consensus 87 ~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTREL 166 (543)
T ss_pred cccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHH
Confidence 56788999999999999999999666 588899999999999999999999999988732 23356789999999999
Q ss_pred HHHHHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 94 AKQTYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
|.|++.+.+++..+. +..+..+.|+........ .+..+++|+|+||++|.+++++. ...-...++++|+||||++++
T Consensus 167 A~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~-kl~k~~niliATPGRLlDHlqNt-~~f~~r~~k~lvlDEADrlLd 244 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD-KLVKGCNILIATPGRLLDHLQNT-SGFLFRNLKCLVLDEADRLLD 244 (543)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH-HhhccccEEEeCCchHHhHhhcC-CcchhhccceeEeecchhhhh
Confidence 999999999999988 788888877765544443 34459999999999999999875 345577789999999999999
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC-CCeEEecCC
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK-RRVQINVGL 225 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~p~~i~~~~ 225 (226)
. +|.+.+.+|.+.+ +...|.++||||.|++++++++--++ +|+++++.+
T Consensus 245 ~---GF~~di~~Ii~~l-pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d 294 (543)
T KOG0342|consen 245 I---GFEEDVEQIIKIL-PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDD 294 (543)
T ss_pred c---ccHHHHHHHHHhc-cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCC
Confidence 9 7999999999999 58999999999999999999988765 699998754
No 12
>KOG0328|consensus
Probab=100.00 E-value=3.2e-34 Score=225.79 Aligned_cols=200 Identities=24% Similarity=0.303 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
++--+.|+++.+.+|+.|+.+|+.+ ++++.|+|++.++.+|+|||.+|.+.+++.+.- ..+.-++++++|||||+.|+
T Consensus 33 gl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi 111 (400)
T KOG0328|consen 33 GLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQI 111 (400)
T ss_pred CchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-ccceeeEEEecChHHHHHHH
Confidence 4566899999999999999999776 599999999999999999999999998888753 33456899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+.+..++.+.++.+..+.|+.+.-+.. .....+.+++.+||+++.+++++ +.+....++++|+||+|.+++. +
T Consensus 112 ~~vi~alg~~mnvq~hacigg~n~gedi-kkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaDemL~k---g 185 (400)
T KOG0328|consen 112 QKVILALGDYMNVQCHACIGGKNLGEDI-KKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEADEMLNK---G 185 (400)
T ss_pred HHHHHHhcccccceEEEEecCCccchhh-hhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccHHHHHHh---h
Confidence 9999999999999988777665533332 22448899999999999999998 8899999999999999999998 7
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
+-.++..+++++ ++.+|++++|||+|+++.+..++|+.||+.|.++|.
T Consensus 186 fk~Qiydiyr~l-p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 186 FKEQIYDIYRYL-PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred HHHHHHHHHHhC-CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 999999999999 789999999999999999999999999999998863
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-33 Score=252.74 Aligned_cols=198 Identities=25% Similarity=0.380 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+.+++++++.+.+|.+++|+|.++. .++.++|++++||||+|||++|++|+++.+.. ...++++||++||++||.|+
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcHHHHHHH
Confidence 46789999999999999999997774 77889999999999999999999999988853 33467999999999999999
Q ss_pred HHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 98 YNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
++.++.+.+.. +..+..+.++....... ..+..+++|+|+||+++.+++.+ ..+++++++++|+||||.+++.
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~q~-~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~--- 164 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDVQL-RALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRM--- 164 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhc---
Confidence 99999998765 57777766665433222 23456789999999999999987 6788999999999999999998
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|...+..++..+ +...|+++||||+|+.+..+.++|+.+|..+.+.
T Consensus 165 gf~~di~~Il~~l-p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~ 211 (629)
T PRK11634 165 GFIEDVETIMAQI-PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQ 211 (629)
T ss_pred ccHHHHHHHHHhC-CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEcc
Confidence 6999999999988 6789999999999999999999999999988765
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.5e-33 Score=242.66 Aligned_cols=201 Identities=26% Similarity=0.349 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC------CCceEEEEcccH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN------LGFRAVIVCPTR 91 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~------~~~~~iil~Pt~ 91 (226)
.+-+++++++.+.+|..++++|.+++ .+.+|+|+++.+|||||||++|++|+++.+..... ..++++|++||+
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 46789999999999999999998775 78899999999999999999999999988754321 247999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
+|+.|+.+.++.+.+..+..+..+.++..............++|+|+||+++..+... +...+++++++|+||+|.++
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~--~~~~l~~l~~lViDEah~l~ 250 (475)
T PRK01297 173 ELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR--GEVHLDMVEVMVLDEADRML 250 (475)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCcccccCceEEechHHHHH
Confidence 9999999999999988888888777764333332233346789999999999998876 66778999999999999999
Q ss_pred ccCccchHHHHHHHHHhcCC-CCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 172 EAGVRGFRDQLAVIYAACSG-PNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+. ++...+..+++..+. ...|++++|||++.++.++++.++.+|..+.+.
T Consensus 251 ~~---~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 301 (475)
T PRK01297 251 DM---GFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIE 301 (475)
T ss_pred hc---ccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEec
Confidence 88 688889999888743 357999999999999999999999999887764
No 15
>KOG0326|consensus
Probab=100.00 E-value=2e-33 Score=224.61 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-++.|..+.+.+|+.|+|+|+.. |..+.|+|++..|..|+|||.+|.+|+++.+. .+....++++++||||||.|+
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-~~~~~IQ~~ilVPtrelALQt 169 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-PKKNVIQAIILVPTRELALQT 169 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC-ccccceeEEEEeecchhhHHH
Confidence 3467899999999999999999655 68899999999999999999999999999997 455678999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
...++++.+..++++....|++.-..+. .++....+++|+||+++++++.. +...++...++|+||||.+++. .
T Consensus 170 Sqvc~~lskh~~i~vmvttGGT~lrDDI-~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~---~ 243 (459)
T KOG0326|consen 170 SQVCKELSKHLGIKVMVTTGGTSLRDDI-MRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSV---D 243 (459)
T ss_pred HHHHHHHhcccCeEEEEecCCcccccce-eeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhch---h
Confidence 9999999999999999888887665554 34678899999999999999998 8888999999999999999998 6
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
|...+..++..+ ++..|++++|||+|-.++.|..+++++|-.|++
T Consensus 244 F~~~~e~li~~l-P~~rQillySATFP~tVk~Fm~~~l~kPy~INL 288 (459)
T KOG0326|consen 244 FQPIVEKLISFL-PKERQILLYSATFPLTVKGFMDRHLKKPYEINL 288 (459)
T ss_pred hhhHHHHHHHhC-CccceeeEEecccchhHHHHHHHhccCcceeeh
Confidence 999999999988 789999999999999999999999999999986
No 16
>KOG0343|consensus
Probab=100.00 E-value=1.4e-33 Score=238.93 Aligned_cols=200 Identities=29% Similarity=0.451 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHh---cCCCCCCceEEEEcccHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSL---RGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~---~~~~~~~~~~iil~Pt~~L 93 (226)
+++.--++.++++..|-.++++|... +..+.|+|++-.|.||||||++|++|+++.+ .+....|..+||++|||+|
T Consensus 74 lpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTREL 153 (758)
T KOG0343|consen 74 LPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTREL 153 (758)
T ss_pred CCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHH
Confidence 56677899999999999999999776 5889999999999999999999999999887 3455567889999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
|.|+++.+...+++.....+.+.|+.. ..++....+..+|+||||++|++++... ..++.+++.++|+||||+++++
T Consensus 154 A~QtFevL~kvgk~h~fSaGLiiGG~~--~k~E~eRi~~mNILVCTPGRLLQHmde~-~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 154 ALQTFEVLNKVGKHHDFSAGLIIGGKD--VKFELERISQMNILVCTPGRLLQHMDEN-PNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred HHHHHHHHHHHhhccccccceeecCch--hHHHHHhhhcCCeEEechHHHHHHhhhc-CCCCCCcceEEEeccHHHHHHH
Confidence 999999999999999999888887765 3333445678899999999999999875 6778999999999999999999
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|...+..|+..+ ++..|+++||||....+.++++-.++||++|.+-
T Consensus 231 ---GFk~tL~~Ii~~l-P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvh 277 (758)
T KOG0343|consen 231 ---GFKKTLNAIIENL-PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVH 277 (758)
T ss_pred ---hHHHHHHHHHHhC-ChhheeeeeecccchhHHHHHHhhcCCCcEEEEe
Confidence 7999999999999 6899999999999999999999999999999764
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-32 Score=245.88 Aligned_cols=201 Identities=26% Similarity=0.380 Sum_probs=169.9
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC------CCCCceEEEEcccH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP------KNLGFRAVIVCPTR 91 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~------~~~~~~~iil~Pt~ 91 (226)
.+-+++++.+.+.+|..++|+|+++. .+++|+|+++++|||||||++|++|+++.+... ....+++||++||+
T Consensus 15 ~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 15 DLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 46789999999999999999997774 888999999999999999999999999887432 12247999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
+|+.|+++.++.+....++++..+.++....... ..+..+++|+|+||++|.+++.+. ..+.+..+++||+||+|.++
T Consensus 95 eLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~-~~l~~~~dIiV~TP~rL~~~l~~~-~~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR-ELLQQGVDVIIATPGRLIDYVKQH-KVVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHHhCCCCEEEECHHHHHHHHHhc-cccchhheeeeEecCHHHHh
Confidence 9999999999999998888888777765433222 234567899999999999988753 35678899999999999999
Q ss_pred ccCccchHHHHHHHHHhcCCC-CceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 172 EAGVRGFRDQLAVIYAACSGP-NLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~~-~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+. +|...+..+++.++.. ..|+++||||+++.+.++...++.+|..+.+.
T Consensus 173 d~---gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 173 DL---GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred hc---chHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 88 6899999999888432 67999999999999999999999988776553
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.5e-32 Score=236.48 Aligned_cols=200 Identities=26% Similarity=0.346 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC---CCCCceEEEEcccHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP---KNLGFRAVIVCPTRELA 94 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~---~~~~~~~iil~Pt~~L~ 94 (226)
.+-+.+++.+.+++|.+++++|+++. .++.|+|+++++|||+|||++|++|+++.+... ...+++++|++||++|+
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa 86 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA 86 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHH
Confidence 35678999999999999999997775 778899999999999999999999999887432 22346999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 95 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
.|+.+.+..+.+..+.++..+.|+....... ..+.++++|+|+||+++.+++.. +.+++.++++||+||||++++.
T Consensus 87 ~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~-~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~- 162 (434)
T PRK11192 87 MQVADQARELAKHTHLDIATITGGVAYMNHA-EVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDM- 162 (434)
T ss_pred HHHHHHHHHHHccCCcEEEEEECCCCHHHHH-HHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCC-
Confidence 9999999999999899988887765443332 23456789999999999999987 6778899999999999999998
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCch-hHHHHHHHhcCCCeEEecCC
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTE-DVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~-~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..+.... +...|+++||||++. .+.++...++.+|+.+++..
T Consensus 163 --~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 163 --GFAQDIETIAAET-RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred --CcHHHHHHHHHhC-ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 6889999988887 567899999999985 57888888899999887653
No 19
>KOG0336|consensus
Probab=100.00 E-value=7.6e-33 Score=227.64 Aligned_cols=197 Identities=27% Similarity=0.393 Sum_probs=170.3
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-----CCCCCceEEEEcccHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-----PKNLGFRAVIVCPTREL 93 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~~iil~Pt~~L 93 (226)
--|++|..+++.+|++|+|+|+|+| ++++|+|++..|+||+|||++|+.|.+..+.. ....++.+++++||++|
T Consensus 227 ~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 227 CYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTREL 306 (629)
T ss_pred hhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHH
Confidence 3579999999999999999999997 78999999999999999999999997766632 23347899999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
+.|+.-+.+... +-+.+..+++|+++..+.. ..+..+.+|+++||++|.++... +.+++.++.++|+||||+|+|+
T Consensus 307 alqie~e~~kys-yng~ksvc~ygggnR~eqi-e~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 307 ALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQI-EDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDM 382 (629)
T ss_pred HHHHHhHHhHhh-hcCcceEEEecCCCchhHH-HHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhcc
Confidence 999977665553 3366666777776555444 34678899999999999999887 8999999999999999999999
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|..+|.+++-.+ .|..|+++.|||+|+.+..++..|+++|+.+-+.
T Consensus 383 ---gFEpqIrkilldi-RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vG 429 (629)
T KOG0336|consen 383 ---GFEPQIRKILLDI-RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVG 429 (629)
T ss_pred ---cccHHHHHHhhhc-CCcceeeeecccCchHHHHHHHHhhhCceEEEec
Confidence 7999999999998 7899999999999999999999999999987653
No 20
>KOG0346|consensus
Probab=100.00 E-value=7.2e-33 Score=229.25 Aligned_cols=200 Identities=27% Similarity=0.317 Sum_probs=170.1
Q ss_pred HHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-----CCCCCceEEEEcccHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-----PKNLGFRAVIVCPTREL 93 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~~iil~Pt~~L 93 (226)
+=+-+++++.+.+|+.+|-+|+.+ ++++.|+|++..|.||||||.+|++|+++.+.. ....++.++|++||+||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL 105 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKEL 105 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHH
Confidence 445789999999999999999665 688999999999999999999999999988732 34457899999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEe--cchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIG--KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
|.|+++.+.++..+.+..+..++ ++.++... ...+...+||+|+||+++..++..+ ....+..++++|+||||.++
T Consensus 106 ~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~-~~~L~d~pdIvV~TP~~ll~~~~~~-~~~~~~~l~~LVvDEADLll 183 (569)
T KOG0346|consen 106 AQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN-SVALMDLPDIVVATPAKLLRHLAAG-VLEYLDSLSFLVVDEADLLL 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH-HHHHccCCCeEEeChHHHHHHHhhc-cchhhhheeeEEechhhhhh
Confidence 99999999999887764443332 22223222 2567789999999999999999873 22778899999999999999
Q ss_pred ccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 172 EAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+. +|.++++.+.+.+ ++.+|-++||||+.+++..+-+.++++|+.+.+.+
T Consensus 184 sf---GYeedlk~l~~~L-Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e 233 (569)
T KOG0346|consen 184 SF---GYEEDLKKLRSHL-PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTE 233 (569)
T ss_pred hc---ccHHHHHHHHHhC-CchhhheeehhhhhhHHHHHHHHhccCCeEEEecc
Confidence 98 7999999999999 68999999999999999999999999999998764
No 21
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.8e-31 Score=209.41 Aligned_cols=196 Identities=31% Similarity=0.419 Sum_probs=164.9
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~ 97 (226)
+.+.+.+.+.+.++..+++.|..++ .+.+++|+++.+|||+|||++|++++++.+.... ..+++++|++|+++|+.|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQI 85 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHH
Confidence 3456788899999999999998776 6667999999999999999999999998886531 3567999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+.++++....+..+....++....... ....++++|+|+||+++.+++.. ....+.+++++|+||+|.+.+. +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~l~~lIvDE~h~~~~~---~ 159 (203)
T cd00268 86 AEVARKLGKHTNLKVVVIYGGTSIDKQI-RKLKRGPHIVVATPGRLLDLLER--GKLDLSKVKYLVLDEADRMLDM---G 159 (203)
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHH-HHhcCCCCEEEEChHHHHHHHHc--CCCChhhCCEEEEeChHHhhcc---C
Confidence 9999999887777777776655433222 22336789999999999998887 4577889999999999998866 5
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
+...+..+.+.+ +..+|++++|||+++++.+++.+++.+|+.++
T Consensus 160 ~~~~~~~~~~~l-~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 160 FEDQIREILKLL-PKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred hHHHHHHHHHhC-CcccEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 888888888887 56899999999999999999999999999874
No 22
>KOG0348|consensus
Probab=99.98 E-value=1.3e-32 Score=232.29 Aligned_cols=200 Identities=28% Similarity=0.386 Sum_probs=167.5
Q ss_pred HHHHHHHHh-hccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-----CCCCCceEEEEcccHHH
Q psy12977 21 IVTTLAVVS-NSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-----PKNLGFRAVIVCPTREL 93 (226)
Q Consensus 21 ~~~~l~~~~-~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-----~~~~~~~~iil~Pt~~L 93 (226)
-|...+.+. .+.+..+|.+|+++ |.+++|+|++|.++||||||++|++|+.+.+.. ....|+.++|++|||||
T Consensus 144 ~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL 223 (708)
T KOG0348|consen 144 HPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTREL 223 (708)
T ss_pred CHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHH
Confidence 344444443 57889999999777 588899999999999999999999999998843 23347899999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
|.|+++.++.+.+.+.+-+-+...+++.......++.++++|+|+||+++.+.+.+- ..+.+++++++|+||+|++++.
T Consensus 224 ~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT-~~i~~s~LRwlVlDEaDrlleL 302 (708)
T KOG0348|consen 224 ALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT-KSIKFSRLRWLVLDEADRLLEL 302 (708)
T ss_pred HHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc-chheeeeeeEEEecchhHHHhc
Confidence 999999999999887777765555555555555678899999999999999998753 6788999999999999999999
Q ss_pred CccchHHHHHHHHHhc---C---------CCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 174 GVRGFRDQLAVIYAAC---S---------GPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~---~---------~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|...|..|++.+ + ++..|.+++|||+.+.+.++...-++||+.|.++
T Consensus 303 ---Gfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld 362 (708)
T KOG0348|consen 303 ---GFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLD 362 (708)
T ss_pred ---cchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeecc
Confidence 6888888888877 1 1246779999999999999999999999999843
No 23
>PTZ00424 helicase 45; Provisional
Probab=99.98 E-value=3.5e-31 Score=227.95 Aligned_cols=198 Identities=21% Similarity=0.311 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
++.++.++.+.+.+|..|+|+|..+. .+.+++|+++++|||+|||++|++|++..+.. ...+.+++|++|+++|+.|+
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-~~~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-DLNACQALILAPTRELAQQI 112 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-CCCCceEEEECCCHHHHHHH
Confidence 45678899999999999999998875 77889999999999999999999999988753 33467899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+.+..++...+.......++....... .....+++|+|+||+++.+.+.+ ....+++++++|+||+|++.+. +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~---~ 186 (401)
T PTZ00424 113 QKVVLALGDYLKVRCHACVGGTVVRDDI-NKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSR---G 186 (401)
T ss_pred HHHHHHHhhhcCceEEEEECCcCHHHHH-HHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhc---c
Confidence 9999999887777766665554332222 22345689999999999998886 5677999999999999999887 5
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+...+..+++.+ ++..|++++|||+|+++.++..+++.+|..+.+.
T Consensus 187 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 232 (401)
T PTZ00424 187 FKGQIYDVFKKL-PPDVQVALFSATMPNEILELTTKFMRDPKRILVK 232 (401)
T ss_pred hHHHHHHHHhhC-CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeC
Confidence 777888888887 6789999999999999999999999988876554
No 24
>KOG0339|consensus
Probab=99.97 E-value=4.2e-31 Score=222.13 Aligned_cols=195 Identities=29% Similarity=0.450 Sum_probs=177.2
Q ss_pred HHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccHHHHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~~L~~q 96 (226)
-..+.+++..-|..++|+|.++ +..++|++++-.|-||||||.+|+.|++..++.+ ...+|.++|++||++||.|
T Consensus 232 kqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Q 311 (731)
T KOG0339|consen 232 KQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQ 311 (731)
T ss_pred HHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHH
Confidence 3567889999999999999776 5889999999999999999999999999888643 3457899999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
++.+++.+++.+++++.+++++....+.... +..+++|+||||+++.+++.. ...++.++.+||+||+|+|.+.
T Consensus 312 i~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~-Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdm--- 385 (731)
T KOG0339|consen 312 IFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE-LKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDM--- 385 (731)
T ss_pred HHHHHHHhhhhccceEEEeecCCcHHHHHHh-hhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcc---
Confidence 9999999999999999999888877665544 458999999999999999998 8999999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
+|..+++.|...+ .+..|.++||||++..++.+++.++.+|+.+..
T Consensus 386 Gfe~qVrSI~~hi-rpdrQtllFsaTf~~kIe~lard~L~dpVrvVq 431 (731)
T KOG0339|consen 386 GFEPQVRSIKQHI-RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQ 431 (731)
T ss_pred ccHHHHHHHHhhc-CCcceEEEeeccchHHHHHHHHHHhcCCeeEEE
Confidence 7999999999999 789999999999999999999999999998754
No 25
>KOG0335|consensus
Probab=99.97 E-value=1.6e-31 Score=226.21 Aligned_cols=197 Identities=31% Similarity=0.438 Sum_probs=168.3
Q ss_pred HHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC---------CCceEEEEcccH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN---------LGFRAVIVCPTR 91 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~---------~~~~~iil~Pt~ 91 (226)
-.....+...+|..++|+|+.. +.+..|++++++|+||+|||.+|++|++..+..... .+|+++|++|||
T Consensus 83 ~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTR 162 (482)
T KOG0335|consen 83 EALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTR 162 (482)
T ss_pred HHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcH
Confidence 3455668899999999999887 488889999999999999999999999998854322 368999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
|||.|++++.+++.-..+.+....+++. +.....+....+|||+|+||++|.+++.+ +.+.+++++++|+||||.|+
T Consensus 163 eL~~Qi~nea~k~~~~s~~~~~~~ygg~-~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 163 ELVDQIYNEARKFSYLSGMKSVVVYGGT-DLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRML 239 (482)
T ss_pred HHhhHHHHHHHhhcccccceeeeeeCCc-chhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhh
Confidence 9999999999999877778887777773 33444566789999999999999999998 89999999999999999999
Q ss_pred c-cCccchHHHHHHHHHhcC---CCCceEEEEeeeCchhHHHHHHHhcCC-CeEEecC
Q psy12977 172 E-AGVRGFRDQLAVIYAACS---GPNLKRGMFSATHTEDVAKWCRRKLKR-RVQINVG 224 (226)
Q Consensus 172 ~-~~~~~~~~~i~~i~~~~~---~~~~q~v~~SAT~~~~~~~~~~~~~~~-p~~i~~~ 224 (226)
| . +|..+|..++.... ....|.++||||+|+++..++..++.+ ++.+.|.
T Consensus 240 D~m---gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~ 294 (482)
T KOG0335|consen 240 DEM---GFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG 294 (482)
T ss_pred hhc---cccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe
Confidence 9 6 78899999988773 257899999999999999988777765 7776654
No 26
>KOG0337|consensus
Probab=99.97 E-value=8.5e-31 Score=215.96 Aligned_cols=200 Identities=34% Similarity=0.479 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
.++-|..++++.+.+|+.++|+|.-. +.++++++++-.+-||||||.||++|++..+......+.|++++.||++|+.|
T Consensus 26 mgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 26 MGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred cCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 56789999999999999999999665 68899999999999999999999999999998777778899999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+..+++++..+.+..+..++....+++ ..+..++|||++||+++..+.-. -.+.++.+.++|+||+|.+.++
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~eeqf-~~l~~npDii~ATpgr~~h~~ve--m~l~l~sveyVVfdEadrlfem--- 179 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEEQF-ILLNENPDIIIATPGRLLHLGVE--MTLTLSSVEYVVFDEADRLFEM--- 179 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHHHH-HHhccCCCEEEecCceeeeeehh--eeccccceeeeeehhhhHHHhh---
Confidence 99999999999888888776665444443 45678999999999999887765 5588999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+|..++.+++..+ +...|.++||||+|+.+.++.++-+.+|+.+.++
T Consensus 180 gfqeql~e~l~rl-~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 180 GFQEQLHEILSRL-PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhHHHHHHHHHhC-CCcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 7999999999999 5667999999999999999999999999988743
No 27
>KOG0334|consensus
Probab=99.96 E-value=5.2e-30 Score=230.85 Aligned_cols=205 Identities=28% Similarity=0.435 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~ 91 (226)
+.++.+++|..++.++|..++++|.++ |.+++|+|+|..|-||||||++|++|++..++.. ...||-++|++||+
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtr 448 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTR 448 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCH
Confidence 467889999999999999999999877 5889999999999999999999999999777433 23489999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC-CCCCCCCCccEEEEcccccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-PPALNLANVEWLIVDESDKL 170 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-~~~~~~~~~~~lViDE~h~l 170 (226)
+|+.|+.+.++.+.+.+++++.+++|+....... .++..+++|+||||+++.+.+..+ +...++.++.++|+||+|++
T Consensus 449 ela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi-aelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrm 527 (997)
T KOG0334|consen 449 ELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI-AELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRM 527 (997)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH-HHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhh
Confidence 9999999999999999999999998886654443 445566999999999999987543 34556788889999999999
Q ss_pred cccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 171 FEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 171 ~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
++. +|..++..|++.+ .+..|.+++|||+|..++.++.+.++.|+.+.+..|
T Consensus 528 fdm---gfePq~~~Ii~nl-rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~ 579 (997)
T KOG0334|consen 528 FDM---GFEPQITRILQNL-RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR 579 (997)
T ss_pred hee---ccCcccchHHhhc-chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc
Confidence 988 6888888899999 789999999999999999999999999999888754
No 28
>KOG0333|consensus
Probab=99.96 E-value=2.3e-29 Score=212.33 Aligned_cols=200 Identities=30% Similarity=0.425 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcC--------CCCCCceEEEEcc
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG--------PKNLGFRAVIVCP 89 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~--------~~~~~~~~iil~P 89 (226)
++..+.++.+..-+|..++|+|.++ ++.++.+|+|..+.||||||++|++|++..+.. +...+|+++++.|
T Consensus 251 ~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilap 330 (673)
T KOG0333|consen 251 GFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAP 330 (673)
T ss_pred CCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeech
Confidence 3466788999999999999999777 588889999999999999999999999877632 2345899999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc
Q psy12977 90 TRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK 169 (226)
Q Consensus 90 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (226)
||+|+.|+.+.-..+.+.++.++..+.|+..-.+. ...+..+|+|+|+||++|.+.+.+ ..+.+..+.++|+||||.
T Consensus 331 tReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq-~fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldeadr 407 (673)
T KOG0333|consen 331 TRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ-GFQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADR 407 (673)
T ss_pred HHHHHHHHHHHHHHhcccccceEEEEecccchhhh-hhhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccchhh
Confidence 99999999999999999999988877777554433 234678999999999999998887 677789999999999999
Q ss_pred ccccCccchHHHHHHHHHhcCCC------------------------CceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 170 LFEAGVRGFRDQLAVIYAACSGP------------------------NLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 170 l~~~~~~~~~~~i~~i~~~~~~~------------------------~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
|.|. +|..++..++.++|.. ..|.++||||.|+.+..+++.|+++|+.+.++
T Consensus 408 miDm---gfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333|consen 408 MIDM---GFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred hhcc---cccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec
Confidence 9999 7999999999988621 17899999999999999999999999999875
No 29
>KOG0347|consensus
Probab=99.96 E-value=6.3e-30 Score=216.77 Aligned_cols=183 Identities=29% Similarity=0.339 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhhccccCCCCccccc-ccCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCC----------CCCCce--E
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGP----------KNLGFR--A 84 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~----------~~~~~~--~ 84 (226)
++.+++|+++++.+|.+|+|+|+.. +.+..| .|++-.|.||||||++|.+|+++.+... ...+++ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 7899999999999999999999666 455566 7999999999999999999999855321 112344 9
Q ss_pred EEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCC-CCCCCCccEEE
Q psy12977 85 VIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPP-ALNLANVEWLI 163 (226)
Q Consensus 85 iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~-~~~~~~~~~lV 163 (226)
+|++||||||.|+.+.+....+..++++..+.|+-.. .++.+.+...++|+|+||++|+.++..++. .-++++++++|
T Consensus 267 LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLav-qKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAV-QKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred EEecChHHHHHHHHHHHHHhccccCeEEEEeechhHH-HHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 9999999999999999999999999999988887543 444566777999999999999999987554 34588999999
Q ss_pred EcccccccccCccchHHHHHHHHHhcC----CCCceEEEEeeeCch
Q psy12977 164 VDESDKLFEAGVRGFRDQLAVIYAACS----GPNLKRGMFSATHTE 205 (226)
Q Consensus 164 iDE~h~l~~~~~~~~~~~i~~i~~~~~----~~~~q~v~~SAT~~~ 205 (226)
+||+|+|++. ++...+..+++.+. ++..|.+.||||+.-
T Consensus 346 lDEaDRmvek---ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~ 388 (731)
T KOG0347|consen 346 LDEADRMVEK---GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL 388 (731)
T ss_pred EccHHHHhhh---ccHHHHHHHHHHhhhhhcccccceEEEEEEeeh
Confidence 9999999998 56677777766663 467899999999763
No 30
>KOG0329|consensus
Probab=99.96 E-value=2.2e-29 Score=196.18 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=181.7
Q ss_pred eeeechhhhhhhHHH-HHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCce
Q psy12977 6 TIALGIFTIGFVISI-IVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFR 83 (226)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~ 83 (226)
.+-+||-..||=..+ -|+.++++-+.||+.++++|... |...-|-|++++|.+|.|||..|.++-++.+.. ......
T Consensus 34 gsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-v~g~vs 112 (387)
T KOG0329|consen 34 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-VDGQVS 112 (387)
T ss_pred CcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-CCCeEE
Confidence 456778888887554 58999999999999999999544 677889999999999999999999999999873 444678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhcCC-CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEE
Q psy12977 84 AVIVCPTRELAKQTYNETVRLSEGLG-LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162 (226)
Q Consensus 84 ~iil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~l 162 (226)
++++|.||+||-|+.++..++.++.. .++..+.|+..-.... ..+.+.++|+|+||+++..+.++ +.+++++++.+
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkde-e~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhF 189 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDE-ELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHF 189 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccH-HHHhCCCeEEEcCcHHHHHHHHh--ccCchhhccee
Confidence 99999999999999999999999876 6777777664332222 23445889999999999999998 89999999999
Q ss_pred EEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 163 ViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
|+||||.+++.- .-+..+.++.+.. ++..|+++||||+++++...++++++||+.|-+++
T Consensus 190 vlDEcdkmle~l--DMrRDvQEifr~t-p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd 249 (387)
T KOG0329|consen 190 VLDECDKMLEQL--DMRRDVQEIFRMT-PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD 249 (387)
T ss_pred ehhhHHHHHHHH--HHHHHHHHHhhcC-cccceeeeeeeecchhhHHHHHhhhcCchhhhccc
Confidence 999999998874 6788899999887 67899999999999999999999999999987764
No 31
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=8.6e-29 Score=188.43 Aligned_cols=166 Identities=27% Similarity=0.424 Sum_probs=132.4
Q ss_pred CCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 37 EPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 37 ~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
||.|...+ .+.+++++++.+|||+|||+++..+++..+.+. ...++++++|+++|++|+.+.+..++...+.++...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccccccc
Confidence 46776665 455889999999999999999999999988754 334999999999999999999999998877788777
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCC-CCc
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG-PNL 194 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~-~~~ 194 (226)
.++..........+.++++|+|+||+++.+.+.. +..++.+++++|+||+|.+.+. .+...+..+.+.+.. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~l~~~---~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISN--GKINISRLSLIVIDEAHHLSDE---TFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--TSSTGTTESEEEEETHHHHHHT---THHHHHHHHHHHSHTTTTS
T ss_pred cccccccccccccccccccccccCcchhhccccc--cccccccceeeccCcccccccc---cHHHHHHHHHHHhcCCCCC
Confidence 6655432122222346799999999999999987 3347778999999999999887 467777777777632 368
Q ss_pred eEEEEeeeCchhHHH
Q psy12977 195 KRGMFSATHTEDVAK 209 (226)
Q Consensus 195 q~v~~SAT~~~~~~~ 209 (226)
|++++|||+++++++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999977765
No 32
>KOG0327|consensus
Probab=99.96 E-value=6.1e-29 Score=203.09 Aligned_cols=200 Identities=24% Similarity=0.320 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-.+.|+++...||++|+-+|+.+. +...|+|+++++++|+|||.+|..++++.+. -+....++++++|+++|+.|+
T Consensus 32 ~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD-~~~ke~qalilaPtreLa~qi 110 (397)
T KOG0327|consen 32 NLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID-MSVKETQALILAPTRELAQQI 110 (397)
T ss_pred CCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC-cchHHHHHHHhcchHHHHHHH
Confidence 35568899999999999999997774 8899999999999999999999999999985 345567899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+....++...+.++..+.++..-..+........++|+|+||+++...++. ..+..+.++++|+||+|.+++. +
T Consensus 111 ~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs~---g 185 (397)
T KOG0327|consen 111 QKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLSR---G 185 (397)
T ss_pred HHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhcc---c
Confidence 9999999999999988777766555454455667799999999999999987 6788888999999999999998 7
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+.+.+..+++.+ +++.|++++|||.|+++....++++.+|+.|.++.
T Consensus 186 fkdqI~~if~~l-p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk 232 (397)
T KOG0327|consen 186 FKDQIYDIFQEL-PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK 232 (397)
T ss_pred hHHHHHHHHHHc-CcchhheeecccCcHHHHHHHHHhccCceEEEecc
Confidence 999999999999 78999999999999999999999999999998864
No 33
>KOG0340|consensus
Probab=99.96 E-value=2.7e-28 Score=197.47 Aligned_cols=189 Identities=26% Similarity=0.325 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+++.+-....++.++.+.+||+|+.. |.++.|+|.+-+|.||||||.+|.+|+++++.. .+.+..++|++|||+|+-|
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse-dP~giFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE-DPYGIFALVLTPTRELALQ 90 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc-CCCcceEEEecchHHHHHH
Confidence 56677888899999999999999666 689999999999999999999999999999974 4557899999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCC--CCCCCccEEEEcccccccccC
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPA--LNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~--~~~~~~~~lViDE~h~l~~~~ 174 (226)
+.+++..+++..+.++..++|+... ......+..++|++|+||+++..++..+.+. ..+++++++|+||||.+++.
T Consensus 91 iaEQF~alGk~l~lK~~vivGG~d~-i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~- 168 (442)
T KOG0340|consen 91 IAEQFIALGKLLNLKVSVIVGGTDM-IMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG- 168 (442)
T ss_pred HHHHHHHhcccccceEEEEEccHHH-hhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-
Confidence 9999999999999999999988644 4445678899999999999999998765333 23888999999999999998
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHH
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCR 212 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~ 212 (226)
.|.+.+.-+.+-+ +...|.++||||+.+.+.++..
T Consensus 169 --~f~d~L~~i~e~l-P~~RQtLlfSATitd~i~ql~~ 203 (442)
T KOG0340|consen 169 --CFPDILEGIEECL-PKPRQTLLFSATITDTIKQLFG 203 (442)
T ss_pred --chhhHHhhhhccC-CCccceEEEEeehhhHHHHhhc
Confidence 7999999999988 4558999999999888776653
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=8.2e-28 Score=219.65 Aligned_cols=195 Identities=19% Similarity=0.178 Sum_probs=147.5
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
+.+.+.+.+++.+|++++++|..+. .+.+|+|+++.+|||||||++|++|+++.+.+. .+.+++|++||++|+.|+.
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQL 98 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHH
Confidence 4578899999999999999997775 778999999999999999999999999998643 3569999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC--CCCCCCCccEEEEcccccccccCcc
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP--PALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~--~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.++.+. ..+.++....|+.....+ ..+..+++|+|+||+++...+...+ ....+++++++|+||+|.+.+..+.
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEER--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHH--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHH
Confidence 9999987 346777777777654433 2344668999999999875432211 1123789999999999998654111
Q ss_pred chHHHHH---HHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEE
Q psy12977 177 GFRDQLA---VIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQI 221 (226)
Q Consensus 177 ~~~~~i~---~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i 221 (226)
.....+. ++.... +.++|++++|||+++..+ .+++++..|+.+
T Consensus 176 ~~~~il~rL~ri~~~~-g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~ 221 (742)
T TIGR03817 176 HVALVLRRLRRLCARY-GASPVFVLASATTADPAA-AASRLIGAPVVA 221 (742)
T ss_pred HHHHHHHHHHHHHHhc-CCCCEEEEEecCCCCHHH-HHHHHcCCCeEE
Confidence 2222222 222223 457899999999987754 677788877654
No 35
>KOG4284|consensus
Probab=99.95 E-value=3e-28 Score=209.95 Aligned_cols=201 Identities=20% Similarity=0.293 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+.+--+.|.+++..+|..++++|..+ |.+..+-|+|+++.+|+|||+.|...+++.+.. ....++.+|++|||+++-|
T Consensus 30 l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-~~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 30 LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-RSSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-ccCcceeEEEecchhhhhH
Confidence 66778899999999999999999655 688899999999999999999998888888863 4556899999999999999
Q ss_pred HHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 97 TYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
+.+.+..++..+ +.++..+.|++..... ....+.++|+|+||+++..++.. +.++.+.++++|+||||.+++..
T Consensus 109 I~~tv~~v~~sf~g~~csvfIGGT~~~~d--~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~- 183 (980)
T KOG4284|consen 109 IKETVRKVAPSFTGARCSVFIGGTAHKLD--LIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE- 183 (980)
T ss_pred HHHHHHHhcccccCcceEEEecCchhhhh--hhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh-
Confidence 999999998744 5777766666543332 23456788999999999999998 89999999999999999999964
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.|.+++..|+..+ +...|++.+|||.|+.+.+.+.+||+||..+..+.|
T Consensus 184 -sfq~~In~ii~sl-P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~ 232 (980)
T KOG4284|consen 184 -SFQDDINIIINSL-PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD 232 (980)
T ss_pred -hHHHHHHHHHHhc-chhheeeEEeccCchhHHHHHHHHhcccceeecccC
Confidence 7999999999999 678999999999999999999999999999987754
No 36
>KOG0332|consensus
Probab=99.95 E-value=2.8e-28 Score=198.53 Aligned_cols=206 Identities=22% Similarity=0.260 Sum_probs=174.9
Q ss_pred hhhhhh--HHHHHHHHHHHhhccccCCCCccccc-ccCCC--CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEE
Q psy12977 12 FTIGFV--ISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPL--GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVI 86 (226)
Q Consensus 12 ~~~~~~--~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~--~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ii 86 (226)
|..+-| +.+-|..|.++..|+|+.++.+|+.+ |.++. .+|++.++.+|+|||.+|.+.++.++. .....|+++.
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd-~~~~~PQ~iC 165 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD-PDVVVPQCIC 165 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC-ccccCCCcee
Confidence 444445 67889999999999999999999766 44444 488999999999999999999999997 4556789999
Q ss_pred EcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcc
Q psy12977 87 VCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166 (226)
Q Consensus 87 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE 166 (226)
++|+++||.|+.+.+.+++++.++...+...+. +..+-..-..+|+|+||+.+.+++... ..+++..++.+|+||
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~s----k~~rG~~i~eqIviGTPGtv~Dlm~kl-k~id~~kikvfVlDE 240 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGS----KAKRGNKLTEQIVIGTPGTVLDLMLKL-KCIDLEKIKVFVLDE 240 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCc----ccccCCcchhheeeCCCccHHHHHHHH-HhhChhhceEEEecc
Confidence 999999999999999999999877776655443 222222344689999999999998764 678899999999999
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 167 ~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
||.+++.. +|.++-.++++.+ ++++|+++||||+.+.++.|+.+..++|..+.++++
T Consensus 241 AD~Mi~tq--G~~D~S~rI~~~l-P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e 297 (477)
T KOG0332|consen 241 ADVMIDTQ--GFQDQSIRIMRSL-PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE 297 (477)
T ss_pred hhhhhhcc--cccccchhhhhhc-CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh
Confidence 99999874 7899999999999 579999999999999999999999999999988764
No 37
>KOG0341|consensus
Probab=99.95 E-value=8.1e-29 Score=202.83 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=166.1
Q ss_pred HHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-------CCCCCceEEEEcccHH
Q psy12977 21 IVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-------PKNLGFRAVIVCPTRE 92 (226)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-------~~~~~~~~iil~Pt~~ 92 (226)
...+|+.+++.+...+||+|.|- |..++|+|.+-.|-||||||+.|.+|++..... ..+.+|..+|+||+|+
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRE 257 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRE 257 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHH
Confidence 34678999999999999999555 688999999999999999999999997765421 2345789999999999
Q ss_pred HHHHHHHHHHHHhhcCC------CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcc
Q psy12977 93 LAKQTYNETVRLSEGLG------LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE 166 (226)
||.|.++.+.++...+. .+...+.|+-.- .........+.+|+|+||+++.+++.. ..++++-.+++.+||
T Consensus 258 LArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v-~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDE 334 (610)
T KOG0341|consen 258 LARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV-REQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDE 334 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH-HHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhh
Confidence 99999999888865542 333333333222 222234567899999999999999988 788899999999999
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 167 ~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
||++.|. +|.++++.++..+ ....|.++||||+|..+..|++.-+-.|+.++|.|
T Consensus 335 ADRmiDm---GFEddir~iF~~F-K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR 389 (610)
T KOG0341|consen 335 ADRMIDM---GFEDDIRTIFSFF-KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR 389 (610)
T ss_pred HHHHhhc---cchhhHHHHHHHH-hhhhheeeeeccccHHHHHHHHhhcccceEEeccc
Confidence 9999999 7999999999888 67899999999999999999999999999999976
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=6.1e-27 Score=215.03 Aligned_cols=181 Identities=23% Similarity=0.305 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
++.+..++.+.+.++.+++|.|+++. .+.+|+|+++++|||+|||++|.+++++.+.. +.+++|++|+++||.|
T Consensus 7 ~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q 82 (737)
T PRK02362 7 PLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASE 82 (737)
T ss_pred CCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHH
Confidence 35678889999999999999998875 36789999999999999999999999998852 5689999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
.++.++.+.+ .+.++....|+..... .....++|+|+||+++..++++ +...+.+++++|+||+|.+.+.
T Consensus 83 ~~~~~~~~~~-~g~~v~~~tGd~~~~~----~~l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~--- 152 (737)
T PRK02362 83 KFEEFERFEE-LGVRVGISTGDYDSRD----EWLGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSA--- 152 (737)
T ss_pred HHHHHHHhhc-CCCEEEEEeCCcCccc----cccCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCC---
Confidence 9999997654 4788877776643222 1235689999999999998876 4456789999999999998875
Q ss_pred chHHHHHHHHHhc--CCCCceEEEEeeeCc--hhHHHHHHH
Q psy12977 177 GFRDQLAVIYAAC--SGPNLKRGMFSATHT--EDVAKWCRR 213 (226)
Q Consensus 177 ~~~~~i~~i~~~~--~~~~~q~v~~SAT~~--~~~~~~~~~ 213 (226)
++...+..++..+ .++..|++++|||++ +++.+|+..
T Consensus 153 ~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~ 193 (737)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDA 193 (737)
T ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCC
Confidence 3444444333332 146789999999986 467777653
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=3e-26 Score=210.01 Aligned_cols=178 Identities=23% Similarity=0.263 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
+.+.+.+.+++.++++++|+|+++. ...+|+|+++++|||+|||++|.+++++.+... +.++||++|+++|+.|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEK 84 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHH
Confidence 4578889999999999999998886 468899999999999999999999999887532 45899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
++.++.+. ..+.++....|+...... ...+++|+|+||+++..++.+ ....+++++++|+||+|.+.+. +
T Consensus 85 ~~~~~~~~-~~g~~v~~~~Gd~~~~~~----~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~---~ 154 (720)
T PRK00254 85 YREFKDWE-KLGLRVAMTTGDYDSTDE----WLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSY---D 154 (720)
T ss_pred HHHHHHHh-hcCCEEEEEeCCCCCchh----hhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCc---c
Confidence 99998764 457888877776543221 235689999999999988875 4456889999999999999876 4
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCc--hhHHHHH
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHT--EDVAKWC 211 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~--~~~~~~~ 211 (226)
....+..++..+ ..+.|++++|||++ +++.+|+
T Consensus 155 rg~~le~il~~l-~~~~qiI~lSATl~n~~~la~wl 189 (720)
T PRK00254 155 RGATLEMILTHM-LGRAQILGLSATVGNAEELAEWL 189 (720)
T ss_pred chHHHHHHHHhc-CcCCcEEEEEccCCCHHHHHHHh
Confidence 667777787777 56789999999986 4455554
No 40
>KOG0350|consensus
Probab=99.94 E-value=1e-26 Score=195.46 Aligned_cols=198 Identities=28% Similarity=0.401 Sum_probs=152.0
Q ss_pred HHHHHHHhhccccCCCCccccc-ccC---------CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTIT-YLS---------PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~-~~~---------~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
-.+.+++..++..+.-|+|.+. +++ ...+|+.+.||||||||++|.+|+.+.+....-+..|++|++|++
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr 225 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTR 225 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHH
Confidence 3566888999999999999443 121 336899999999999999999999999977666678999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc----CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS----AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~ 167 (226)
+|+.|+++.+..++...+..++...|-..-........ ....||+|+||++|.++++.. ..++++.++++|||||
T Consensus 226 ~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 226 ELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechH
Confidence 99999999999999999988877766543322222212 234599999999999999863 7899999999999999
Q ss_pred ccccccCccchHHHHHHHHHhc-------------C-----------------CCCceEEEEeeeCchhHHHHHHHhcCC
Q psy12977 168 DKLFEAGVRGFRDQLAVIYAAC-------------S-----------------GPNLKRGMFSATHTEDVAKWCRRKLKR 217 (226)
Q Consensus 168 h~l~~~~~~~~~~~i~~i~~~~-------------~-----------------~~~~q~v~~SAT~~~~~~~~~~~~~~~ 217 (226)
|++++..+.++...+....+-. . .+..+.+++|||+..+...+..--++.
T Consensus 305 DRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~ 384 (620)
T KOG0350|consen 305 DRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHI 384 (620)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCC
Confidence 9999885555555544433221 0 123457788999887777777777777
Q ss_pred CeE
Q psy12977 218 RVQ 220 (226)
Q Consensus 218 p~~ 220 (226)
|..
T Consensus 385 Prl 387 (620)
T KOG0350|consen 385 PRL 387 (620)
T ss_pred Cce
Confidence 743
No 41
>KOG0344|consensus
Probab=99.93 E-value=2.4e-26 Score=196.54 Aligned_cols=204 Identities=40% Similarity=0.597 Sum_probs=172.4
Q ss_pred HHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC----CCCceEEEEcccHHHHH
Q psy12977 21 IVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK----NLGFRAVIVCPTRELAK 95 (226)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~----~~~~~~iil~Pt~~L~~ 95 (226)
-+-.++.+.+.+|..++|.|.++ |.++.+++++.++|||+|||++|.+|+++.+.... ..+.+++|+.|+++|+.
T Consensus 144 ~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~ 223 (593)
T KOG0344|consen 144 NKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAA 223 (593)
T ss_pred cHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHH
Confidence 44568899999999999999777 58888999999999999999999999999986655 56789999999999999
Q ss_pred HHHHHHHHHh--hcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 96 QTYNETVRLS--EGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 96 q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
|++.++.++. +..+.+............+........++|+|+||.++...+....-.++++.+.++|+||+|.+.+.
T Consensus 224 Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 224 QIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred HHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 9999999998 54445544444333333333334456689999999999999988656689999999999999999987
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
..|..++..++....++...+-+||||.+.++++|++..+.+++.+-+..|
T Consensus 304 --~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 304 --EFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred --hhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 369999999999998899999999999999999999999999998877654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.93 E-value=7.8e-26 Score=210.21 Aligned_cols=193 Identities=26% Similarity=0.293 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-----CCCceEEEEcccHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-----NLGFRAVIVCPTRE 92 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~~iil~Pt~~ 92 (226)
..++..++.+-..+|++++|+|+.++ .+.+|+|++++||||||||++|.+|+++.+.... ..+.+++|++|+++
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 34445555555568999999998885 7788999999999999999999999998774311 34678999999999
Q ss_pred HHHHHHHHHHH-------Hh----hcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 93 LAKQTYNETVR-------LS----EGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 93 L~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
|+.|+++.+.+ +. ... +.++....|+.....+. ......++|+|+||+++..++........+++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~-~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ-KMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH-HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 99999886553 22 122 45667777765544332 2244678999999999988775421222478999
Q ss_pred EEEEcccccccccCcc-chHHHHHHHHHhcCCCCceEEEEeeeCch--hHHHHHHH
Q psy12977 161 WLIVDESDKLFEAGVR-GFRDQLAVIYAACSGPNLKRGMFSATHTE--DVAKWCRR 213 (226)
Q Consensus 161 ~lViDE~h~l~~~~~~-~~~~~i~~i~~~~~~~~~q~v~~SAT~~~--~~~~~~~~ 213 (226)
++|+||+|.+.+.... .+...+.++.... .+..|++++|||+++ ++.+|+..
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-~~~~q~IglSATl~~~~~va~~L~~ 229 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELA-GGEFVRIGLSATIEPLEEVAKFLVG 229 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhc-CCCCeEEEEecccCCHHHHHHHhcC
Confidence 9999999999865311 1223344444333 467899999999874 56666544
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=3.4e-25 Score=199.92 Aligned_cols=191 Identities=26% Similarity=0.279 Sum_probs=151.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTREL 93 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~~L 93 (226)
.+-|-+...+++. |.++||.|.+++ .+.+|+|+++.||||||||.++.+|+++.+... ...+..++|++|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3445556666666 999999998885 788999999999999999999999999888544 2345799999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.+++...+..+.+..|..+....|++.+.++. ....+.+||+|+||+++.-++......-.+.+++++|+||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~-r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQ-KMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhh-hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999999999998888887766554 44678899999999999988865333445899999999999998765
Q ss_pred C-ccchHHHHHHHHHhcCCCCceEEEEeeeCc--hhHHHHHHH
Q psy12977 174 G-VRGFRDQLAVIYAACSGPNLKRGMFSATHT--EDVAKWCRR 213 (226)
Q Consensus 174 ~-~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~--~~~~~~~~~ 213 (226)
. +......+.++.... . ..|.+++|||.. +++.+|+-.
T Consensus 165 KRG~~Lsl~LeRL~~l~-~-~~qRIGLSATV~~~~~varfL~g 205 (814)
T COG1201 165 KRGVQLALSLERLRELA-G-DFQRIGLSATVGPPEEVAKFLVG 205 (814)
T ss_pred ccchhhhhhHHHHHhhC-c-ccEEEeehhccCCHHHHHHHhcC
Confidence 3 223444555555444 3 899999999954 556666533
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=99.92 E-value=7.8e-25 Score=199.65 Aligned_cols=173 Identities=20% Similarity=0.275 Sum_probs=134.3
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
+.+..++.+.+.+|+ +++.|.++. .+.+++|+++++|||+|||+++.+++++.+.. +.++||++|+++||.|++
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~raLa~q~~ 82 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRSLAMEKY 82 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHHHHHHHH
Confidence 567888999999987 999998875 66888999999999999999999999888763 458999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
+.++++. ..+.++....|+...... ....++|+|+||+++..++.+ ....+.+++++|+||+|.+.+..+...
T Consensus 83 ~~~~~l~-~~g~~v~~~~G~~~~~~~----~~~~~dIiv~Tpek~~~l~~~--~~~~l~~v~lvViDEaH~l~d~~rg~~ 155 (674)
T PRK01172 83 EELSRLR-SLGMRVKISIGDYDDPPD----FIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGDEDRGPT 155 (674)
T ss_pred HHHHHHh-hcCCeEEEEeCCCCCChh----hhccCCEEEECHHHHHHHHhC--ChhHHhhcCEEEEecchhccCCCccHH
Confidence 9998864 457777766665432221 224679999999999998876 345578999999999999877532223
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
...+...++.. ++..|++++|||++.
T Consensus 156 le~ll~~~~~~-~~~~riI~lSATl~n 181 (674)
T PRK01172 156 LETVLSSARYV-NPDARILALSATVSN 181 (674)
T ss_pred HHHHHHHHHhc-CcCCcEEEEeCccCC
Confidence 33333333344 567899999999864
No 45
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.91 E-value=4.9e-24 Score=193.85 Aligned_cols=183 Identities=23% Similarity=0.288 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhccccCCCC-cccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEP-HFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~-~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
+.......++..++.++.+ +|+..+ ...+++|+++++|||+|||+.+.+.+++.+.+. +.++||++|+++||.+.
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek 92 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHH
Confidence 3445566677777754444 454444 555689999999999999999999999998753 56899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
++.++ ..+.+|.++....|+..... ....+++|+|+||+++....++. ......++++|+||+|.+.+..+..
T Consensus 93 ~~~~~-~~~~~GirV~~~TgD~~~~~----~~l~~~~ViVtT~EK~Dsl~R~~--~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 93 YEEFS-RLEELGIRVGISTGDYDLDD----ERLARYDVIVTTPEKLDSLTRKR--PSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHhh-hHHhcCCEEEEecCCcccch----hhhccCCEEEEchHHhhHhhhcC--cchhhcccEEEEeeeeecCCcccCc
Confidence 99999 55667999999988854332 23467899999999999999874 4488899999999999888773223
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCc--hhHHHHHHH
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHT--EDVAKWCRR 213 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~--~~~~~~~~~ 213 (226)
....+..-+... ++.+|++++|||+| .++-+|++.
T Consensus 166 ~lE~iv~r~~~~-~~~~rivgLSATlpN~~evA~wL~a 202 (766)
T COG1204 166 VLESIVARMRRL-NELIRIVGLSATLPNAEEVADWLNA 202 (766)
T ss_pred eehhHHHHHHhh-CcceEEEEEeeecCCHHHHHHHhCC
Confidence 444444444344 45689999999998 466666654
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.91 E-value=1.2e-23 Score=190.94 Aligned_cols=186 Identities=18% Similarity=0.114 Sum_probs=132.5
Q ss_pred ccccCCCCcccccc-cCCCCC-eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 31 SIFKHFEPHFTITY-LSPLGR-QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 31 ~~~~~~~~~Q~~~~-~~~~~~-~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
.+|+ ++|+|.+.. .+..|+ ++++++|||||||.++..+++.. ........+.|+++|+|+|+.|+++.++.+.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4666 999997764 667887 68889999999999765444422 2122222355557799999999999999998765
Q ss_pred -----------------------CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHh-cC------CCCC---C
Q psy12977 109 -----------------------GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQ-MD------PPAL---N 155 (226)
Q Consensus 109 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~-~~------~~~~---~ 155 (226)
++++..+.|+...... ...+..+++|+|+|++.+.+-.- +. ...+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q-~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~ 168 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE-WMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGF 168 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH-HHhcCCCCcEEEECHHHHcCCccccccccccccccchhhh
Confidence 3566777777544333 34566789999999655433111 00 0001 2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc--CCC--CceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC--SGP--NLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~--~~~--~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
+.+++++|+|||| ++. +|...+..|++.+ ++. ..|+++||||+|.++.+....++.++..+.+.
T Consensus 169 L~~v~~LVLDEAD--Ld~---gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~ 236 (844)
T TIGR02621 169 LGQDALIVHDEAH--LEP---AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVL 236 (844)
T ss_pred hccceEEEEehhh--hcc---ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecc
Confidence 6889999999999 556 6999999999864 221 26999999999999988888888888776664
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=3.5e-24 Score=187.82 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=127.0
Q ss_pred hhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
+-++|..|+|.|..+. .+++|+|+++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.++.+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~--- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS--- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc---
Confidence 4578999999997775 77889999999999999999999998752 347899999999999998888754
Q ss_pred CCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHHH-
Q psy12977 108 LGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQL- 182 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~i- 182 (226)
+.....++++....... ........+|+++||+++....... ..+ ...+++++|+||||+++++++ .|....
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~-~~l~~~~~i~~iViDEaH~i~~~g~-~fr~~~~ 151 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLL-QTLEERKGITLIAVDEAHCISQWGH-DFRPDYK 151 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHH-HHHHhcCCcCEEEEeCCcccCcccc-ccHHHHH
Confidence 66666666654433111 1123456899999999976422110 111 467899999999999998753 344443
Q ss_pred --HHHHHhcCCCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 183 --AVIYAACSGPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 183 --~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
..+...+ +..|++++|||+++.+.+.+.+.+
T Consensus 152 ~l~~l~~~~--~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 152 ALGSLKQKF--PNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred HHHHHHHHc--CCCceEEEecCCCHHHHHHHHHHc
Confidence 3344444 678999999999998876666654
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=99.90 E-value=7e-23 Score=193.72 Aligned_cols=164 Identities=22% Similarity=0.223 Sum_probs=121.6
Q ss_pred CCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
+++++|..+ +.++.|+|++++||||+|||. +.+++...+.. .+.+++|++||++|+.|+.+.++.+....+..+.
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 789999666 478899999999999999996 44454444432 3679999999999999999999999998887776
Q ss_pred EEecchhh----hh-hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc--------cchH-
Q psy12977 114 VIGKIQQA----AE-KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV--------RGFR- 179 (226)
Q Consensus 114 ~~~~~~~~----~~-~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~--------~~~~- 179 (226)
...++... .. .......+.++|+|+||+++.+.+. .+...+++++|+||||++++++. .+|.
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~----~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD----ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH----hccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 66554321 11 1111123568999999999998765 34456799999999999997421 1453
Q ss_pred HHHHHHHHhcCC-----------------------CCceEEEEeeeCchh
Q psy12977 180 DQLAVIYAACSG-----------------------PNLKRGMFSATHTED 206 (226)
Q Consensus 180 ~~i~~i~~~~~~-----------------------~~~q~v~~SAT~~~~ 206 (226)
+.+..+++.++. ...|++++|||.++.
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~ 281 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR 281 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc
Confidence 566666666532 168999999999864
No 49
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=183.84 Aligned_cols=193 Identities=23% Similarity=0.264 Sum_probs=146.0
Q ss_pred HHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
...+.+.+...+..+|..++ .+.+|+|++|++|||||||.+|++|+++.+..+... ++|++-||++|++.+.+.+.+
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALANDQAERLRE 137 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc--cEEEEechhhhHhhHHHHHHH
Confidence 66677888888999998887 778899999999999999999999999999765444 899999999999999999999
Q ss_pred HhhcCC--CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC--CCCCCCCccEEEEcccccccccCccchH
Q psy12977 104 LSEGLG--LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP--PALNLANVEWLIVDESDKLFEAGVRGFR 179 (226)
Q Consensus 104 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~--~~~~~~~~~~lViDE~h~l~~~~~~~~~ 179 (226)
+....+ +.....+|+....++. ....+.++|++|||.++..++.+.. ....++++++||+||+|..-+..+.+..
T Consensus 138 ~~~~~~~~v~~~~y~Gdt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 138 LISDLPGKVTFGRYTGDTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred HHHhCCCcceeeeecCCCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 998888 5566666665554432 3456889999999999998554321 2334777999999999977655333444
Q ss_pred HHHHHHHHhcC--CCCceEEEEeeeCchhHHHHHHHhcCCCeEE
Q psy12977 180 DQLAVIYAACS--GPNLKRGMFSATHTEDVAKWCRRKLKRRVQI 221 (226)
Q Consensus 180 ~~i~~i~~~~~--~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i 221 (226)
..++++++.+. +...|+++.|||... ..+++..+.+.....
T Consensus 217 ~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~ 259 (851)
T COG1205 217 LLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEV 259 (851)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCccee
Confidence 44445444441 457899999999753 344555555544433
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=9.9e-23 Score=188.07 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=124.3
Q ss_pred hhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
.-++++.|+|.|..+. .++.|+|+++.+|||+|||++|++|++.. +..+||++|+++|+.++...+...
T Consensus 454 ~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~L~~~--- 523 (1195)
T PLN03137 454 KVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMNLLQA--- 523 (1195)
T ss_pred HHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHhC---
Confidence 3467889999997775 78899999999999999999999998753 247999999999998766655543
Q ss_pred CCCeEEEEecchhhhhhhC--CC---cCCCCCEEEECchHHHH---hHhcCCCCCCCCCccEEEEcccccccccCccchH
Q psy12977 108 LGLRAHVIGKIQQAAEKFG--PR---SAQKFDVLITTPNKLVY---LLQMDPPALNLANVEWLIVDESDKLFEAGVRGFR 179 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~--~~---~~~~~~IiV~Tp~~l~~---~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~ 179 (226)
++....+.++....+... .. ....++|+++||+++.. ++...........+.+|||||||+++++++ .|.
T Consensus 524 -GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh-DFR 601 (1195)
T PLN03137 524 -NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH-DFR 601 (1195)
T ss_pred -CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc-chH
Confidence 777777766543322211 11 12568999999999863 222111112234588999999999999863 355
Q ss_pred HHHHH---HHHhcCCCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 180 DQLAV---IYAACSGPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 180 ~~i~~---i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
..... +.+.+ +..|++++|||.++.+.+.+.+.+
T Consensus 602 pdYr~L~~Lr~~f--p~vPilALTATAT~~V~eDI~~~L 638 (1195)
T PLN03137 602 PDYQGLGILKQKF--PNIPVLALTATATASVKEDVVQAL 638 (1195)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEecCCHHHHHHHHHHc
Confidence 54443 34444 578999999999998887666655
No 51
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=2.2e-22 Score=181.07 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=128.8
Q ss_pred hhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
+.++|.+|+|.|..+. .+++|+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.++.+
T Consensus 7 ~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~~l~~~--- 76 (591)
T TIGR01389 7 RTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVDQLRAA--- 76 (591)
T ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHHHHHc---
Confidence 3489999999998775 77889999999999999999999998742 236899999999999999988775
Q ss_pred CCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHH---H
Q psy12977 108 LGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRD---Q 181 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~---~ 181 (226)
++.+..++++....+.. .....+..+|+++||+++...... ..+...+++++|+||||++.++++ .|.. .
T Consensus 77 -gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~--~~l~~~~l~~iViDEaH~i~~~g~-~frp~y~~ 152 (591)
T TIGR01389 77 -GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL--NMLQRIPIALVAVDEAHCVSQWGH-DFRPEYQR 152 (591)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH--HHHhcCCCCEEEEeCCcccccccC-ccHHHHHH
Confidence 66666666554332211 122346789999999998753332 344567899999999999988753 3444 4
Q ss_pred HHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC
Q psy12977 182 LAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216 (226)
Q Consensus 182 i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~ 216 (226)
+..+...+ +..+++++|||.++.+.+.+...+.
T Consensus 153 l~~l~~~~--~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 153 LGSLAERF--PQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred HHHHHHhC--CCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 44445555 4556999999999988777776653
No 52
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=1.8e-21 Score=150.56 Aligned_cols=186 Identities=34% Similarity=0.483 Sum_probs=143.5
Q ss_pred hccccCCCCcccccc-cCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 30 NSIFKHFEPHFTITY-LSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
..++.++++.|.... ....+ ++.++.+|||+|||.++..++++.+.... ..++++++|+++++.|+.+.+..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 456778899997775 44555 89999999999999999888888876532 358999999999999999999988765
Q ss_pred CC-CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 108 LG-LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
.. .......+.. .............+++++|++.+.+.... .......++++|+||+|.+.+. .+...+..++
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~t~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~~~~ 154 (201)
T smart00487 81 LGLKVVGLYGGDS-KREQLRKLESGKTDILVTTPGRLLDLLEN--DLLELSNVDLVILDEAHRLLDG---GFGDQLEKLL 154 (201)
T ss_pred CCeEEEEEeCCcc-hHHHHHHHhcCCCCEEEeChHHHHHHHHc--CCcCHhHCCEEEEECHHHHhcC---CcHHHHHHHH
Confidence 54 3333333322 11221112223339999999999999887 3466788999999999999874 4777888888
Q ss_pred HhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 187 AACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 187 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
..+ ++..+++++|||+++...+....++.+.+.+..+
T Consensus 155 ~~~-~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 155 KLL-PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HhC-CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 777 6789999999999999999999999888887665
No 53
>PRK14701 reverse gyrase; Provisional
Probab=99.88 E-value=6.7e-22 Score=190.97 Aligned_cols=194 Identities=21% Similarity=0.174 Sum_probs=133.5
Q ss_pred HHHHHHHHHhh-ccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 20 IIVTTLAVVSN-SIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 20 ~~~~~l~~~~~-~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
...+..+.+++ .+| +|+++|..+ +.+++|+|+++.||||+|||++++.+++.... .+.+++|++||++|+.|+
T Consensus 64 ~~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 64 EVEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHHHH
Confidence 34455566665 788 699999666 48889999999999999999966665554332 356899999999999999
Q ss_pred HHHHHHHhhcCC--CeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 98 YNETVRLSEGLG--LRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
.+.++.+.+..+ ..+...+++....++. .....+.++|+|+||+.+.+.+.. .. ..+++++|+||||++++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~---l~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE---MK-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH---Hh-hCCCCEEEEECceeccc
Confidence 999999988765 4455555554433321 112234689999999999877653 12 26799999999999987
Q ss_pred cCc--------cchHHHHHH----HHH----------------------hcCCCCce-EEEEeeeCchhHHHHHHHhcCC
Q psy12977 173 AGV--------RGFRDQLAV----IYA----------------------ACSGPNLK-RGMFSATHTEDVAKWCRRKLKR 217 (226)
Q Consensus 173 ~~~--------~~~~~~i~~----i~~----------------------~~~~~~~q-~v~~SAT~~~~~~~~~~~~~~~ 217 (226)
+++ .+|...+.. +++ .+ +...| .+++|||.++.. ...+++++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ll~~SAT~~~r~--~~~~l~~~ 291 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKI-GNKIGCLIVASATGKAKG--DRVKLYRE 291 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhc-CCCccEEEEEecCCCchh--HHHHHhhc
Confidence 543 256665543 321 12 23344 678999988531 11234466
Q ss_pred CeEEecCC
Q psy12977 218 RVQINVGL 225 (226)
Q Consensus 218 p~~i~~~~ 225 (226)
++.+++..
T Consensus 292 ~l~f~v~~ 299 (1638)
T PRK14701 292 LLGFEVGS 299 (1638)
T ss_pred CeEEEecC
Confidence 66666543
No 54
>KOG0952|consensus
Probab=99.88 E-value=7.9e-23 Score=184.24 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=138.8
Q ss_pred hhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC------CCCceEEEEcccHHHHHHHHHH
Q psy12977 29 SNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK------NLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~------~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
.-+.|+++|.+|+..+ ...++.|.+|+||||+|||..+++.+++.+.+.. ....++||++|+++||..+.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 3467789999998886 5567789999999999999999999999987421 2357999999999999999999
Q ss_pred HHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCC-CCCCCCccEEEEcccccccccCccchH
Q psy12977 101 TVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPP-ALNLANVEWLIVDESDKLFEAGVRGFR 179 (226)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~-~~~~~~~~~lViDE~h~l~~~~~~~~~ 179 (226)
+.+....+|.++....|+....... ...++|+|+||+++--.-+++.+ .--++.++++|+||+|.+-+..+....
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te----i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE----IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH----HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 9999888899999999886544332 46789999999997554443222 223677899999999988877544444
Q ss_pred HHHHHHHHhc--CCCCceEEEEeeeCc--hhHHHHHHH
Q psy12977 180 DQLAVIYAAC--SGPNLKRGMFSATHT--EDVAKWCRR 213 (226)
Q Consensus 180 ~~i~~i~~~~--~~~~~q~v~~SAT~~--~~~~~~~~~ 213 (226)
.-+.+.++.. .....+++++|||+| .++..|++-
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~v 297 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRV 297 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcC
Confidence 4444555433 134678999999999 466666654
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=5.3e-22 Score=183.93 Aligned_cols=181 Identities=17% Similarity=0.181 Sum_probs=131.9
Q ss_pred HHHHHHhh-ccccCCCCcccccc-cCCC------CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 23 TTLAVVSN-SIFKHFEPHFTITY-LSPL------GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 23 ~~l~~~~~-~~~~~~~~~Q~~~~-~~~~------~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
+..+.+.+ ..| ++||.|..+. .+.+ ..|.+++||||+|||.+++.+++..+.. +.+++|++||++||
T Consensus 439 ~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA 513 (926)
T TIGR00580 439 EWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLA 513 (926)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHH
Confidence 33444444 567 5899997764 3333 3689999999999999999999988764 46899999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhhhhh---hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc
Q psy12977 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 95 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
.|+++.++++++..+.++..+.+.....+. ......+.++|+|+||..+ . ....+++++++|+||+|++.
T Consensus 514 ~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~---~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 514 QQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q---KDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h---CCCCcccCCEEEeecccccc
Confidence 999999999998888888777665432221 1122235689999999532 2 45668899999999999863
Q ss_pred ccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 172 EAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
.. . ...++.+ .+++|+++||||+.+...........++..|...
T Consensus 587 v~----~----~~~L~~~-~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~ 630 (926)
T TIGR00580 587 VK----Q----KEKLKEL-RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATP 630 (926)
T ss_pred hh----H----HHHHHhc-CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecC
Confidence 22 2 2333444 4678999999998776666665666777776643
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=6e-22 Score=187.06 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=134.6
Q ss_pred HHHHhhccccCCCCcccccc-cCCCC------CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHFTITY-LSPLG------RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q~~~~-~~~~~------~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
-+..+++.| ++|+.|..+. .+..+ .|.+++|+||+|||.+++.+++..+. .+.+++|++||++||.|+
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHH
Confidence 344566677 7999997774 44443 78999999999999999888777664 267899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhC---CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFG---PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
++.+++.+...+.++....+.....++.. ....+.++|+|+||+.+ . ..+.+++++++|+||+|++...
T Consensus 666 ~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~---~~v~~~~L~lLVIDEahrfG~~- 737 (1147)
T PRK10689 666 YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q---SDVKWKDLGLLIVDEEHRFGVR- 737 (1147)
T ss_pred HHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h---CCCCHhhCCEEEEechhhcchh-
Confidence 99999988777777776665544333221 11235789999999643 2 3455789999999999997221
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
. ...++.+ ++++|++++|||+.+....+....+.++..|...
T Consensus 738 ---~----~e~lk~l-~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~ 779 (1147)
T PRK10689 738 ---H----KERIKAM-RADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 (1147)
T ss_pred ---H----HHHHHhc-CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecC
Confidence 2 2334455 5689999999998888888888888899888754
No 57
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=4.1e-22 Score=179.43 Aligned_cols=174 Identities=21% Similarity=0.277 Sum_probs=126.2
Q ss_pred hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 30 NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
-++|+.|+|.|..+. .+++|+|+++.+|||+|||++|++|++.. ...+||++|+++|+.|+.+.++..
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~~~---- 88 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLLAN---- 88 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHHHc----
Confidence 379999999997775 77899999999999999999999998753 236899999999999999888765
Q ss_pred CCeEEEEecchhhhhh---hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchH---HHH
Q psy12977 109 GLRAHVIGKIQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFR---DQL 182 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~---~~i 182 (226)
+.......+....... .........+++++||+++...... ..+...+++++|+||||++.++++ .|. ..+
T Consensus 89 gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~--~~l~~~~l~~iVIDEaH~i~~~G~-~fr~~y~~L 165 (607)
T PRK11057 89 GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL--EHLAHWNPALLAVDEAHCISQWGH-DFRPEYAAL 165 (607)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH--HHHhhCCCCEEEEeCccccccccC-cccHHHHHH
Confidence 6666666555433221 1122345678999999998742211 223345789999999999998753 243 344
Q ss_pred HHHHHhcCCCCceEEEEeeeCchhHHHHHHHhc--CCCe
Q psy12977 183 AVIYAACSGPNLKRGMFSATHTEDVAKWCRRKL--KRRV 219 (226)
Q Consensus 183 ~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~--~~p~ 219 (226)
..+.+.+ +..+++++|||.++.....+...+ .+|.
T Consensus 166 ~~l~~~~--p~~~~v~lTAT~~~~~~~di~~~l~l~~~~ 202 (607)
T PRK11057 166 GQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (607)
T ss_pred HHHHHhC--CCCcEEEEecCCChhHHHHHHHHhCCCCeE
Confidence 4455554 678999999999988765554433 3554
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=1.4e-21 Score=186.34 Aligned_cols=149 Identities=25% Similarity=0.227 Sum_probs=113.3
Q ss_pred EECCCCchHhHHHHHHHHHHhcCCC---------CCCceEEEEcccHHHHHHHHHHHHHHhh------------cCCCeE
Q psy12977 54 ACAPTGSGKTAAFLIPIIHSLRGPK---------NLGFRAVIVCPTRELAKQTYNETVRLSE------------GLGLRA 112 (226)
Q Consensus 54 i~apTGsGKT~~~~~~~~~~~~~~~---------~~~~~~iil~Pt~~L~~q~~~~~~~~~~------------~~~~~~ 112 (226)
|++|||||||++|.+|+++.+.... ..+.++||++|+++|+.|+.+.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998875321 2357999999999999999998875221 235777
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC-ccchHHHHHHHHHhcCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG-VRGFRDQLAVIYAACSG 191 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~-~~~~~~~i~~i~~~~~~ 191 (226)
....|+....++. ....+.+||+|+||+++..++.+. ....++++++||+||+|.+.+.. +..+...+.++...+ +
T Consensus 81 ~vrtGDt~~~eR~-rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~-~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERS-KLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL-H 157 (1490)
T ss_pred EEEECCCCHHHHH-HHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC-C
Confidence 7788876554432 123467899999999999987652 34568999999999999998652 223455666666655 5
Q ss_pred CCceEEEEeeeCch
Q psy12977 192 PNLKRGMFSATHTE 205 (226)
Q Consensus 192 ~~~q~v~~SAT~~~ 205 (226)
.+.|++++|||+++
T Consensus 158 ~~~QrIgLSATI~n 171 (1490)
T PRK09751 158 TSAQRIGLSATVRS 171 (1490)
T ss_pred CCCeEEEEEeeCCC
Confidence 67899999999876
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.87 E-value=9.2e-22 Score=186.34 Aligned_cols=143 Identities=24% Similarity=0.207 Sum_probs=105.7
Q ss_pred HHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
-+..+.+.+....+|+++|..+ +.++.|+|++++||||+|||. |.+++...+.. .+++++|++||++|+.|+.+.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHH
Confidence 3445555555556899999666 578899999999999999997 55666555432 267999999999999999999
Q ss_pred HHHHhhcCCCeEE---EEecchhhhhh---hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 101 TVRLSEGLGLRAH---VIGKIQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 101 ~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
++.+.+..+.... ..+|+.....+ ......++++|+|+||+++.+.+... .. .++++|+||||++++.
T Consensus 141 l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l----~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 141 ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL----GP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----cC-CCCEEEEeChHhhhhc
Confidence 9999987775543 23444322221 11122356999999999999877652 11 8999999999999984
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=1.9e-21 Score=175.83 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=121.0
Q ss_pred HHHHhhccccCCCCcccccc-cCCCC------CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHFTITY-LSPLG------RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q~~~~-~~~~~------~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
...+++..| ++++.|..+. .+.++ .+.+++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHHHHH
Confidence 345667777 6999996663 33332 368999999999999999999988763 56899999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhh---hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
++.++++++..+.++..+.|+.....+ ......+.++|+|+||+.+.+ ...+.+++++|+||+|++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHH-
Confidence 999999999888999888877544332 222334678999999987643 345789999999999986432
Q ss_pred ccchHHHHHHHHHhcCC-CCceEEEEeeeCchhH
Q psy12977 175 VRGFRDQLAVIYAACSG-PNLKRGMFSATHTEDV 207 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~-~~~q~v~~SAT~~~~~ 207 (226)
.... +...... ..+++++||||+.+..
T Consensus 373 ---qr~~---l~~~~~~~~~~~~l~~SATp~prt 400 (630)
T TIGR00643 373 ---QRKK---LREKGQGGFTPHVLVMSATPIPRT 400 (630)
T ss_pred ---HHHH---HHHhcccCCCCCEEEEeCCCCcHH
Confidence 2222 2222211 2689999999975543
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=6.2e-21 Score=173.68 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=120.0
Q ss_pred hhccccCCCCcccccc-cCCCC------CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLG------RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~------~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
+...| ++++.|..+. .+.++ .+.+++||||||||.+|+++++..+.. +.+++|++||++||.|+++.+
T Consensus 256 ~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~Q~~~~l 330 (681)
T PRK10917 256 ASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAEQHYENL 330 (681)
T ss_pred HhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHHHHHHHH
Confidence 34455 5999997774 33333 479999999999999999999988753 668999999999999999999
Q ss_pred HHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 102 VRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
+++.+..+.++..+.|+.....+. .....+.++|+|+||+.+. ....+++++++|+||+|++... .
T Consensus 331 ~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~----q 399 (681)
T PRK10917 331 KKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVE----Q 399 (681)
T ss_pred HHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHH----H
Confidence 999998899998888876533221 1223456999999998763 2345789999999999987432 2
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
.. .+... ...+++++||||+.+....+
T Consensus 400 r~----~l~~~-~~~~~iL~~SATp~prtl~~ 426 (681)
T PRK10917 400 RL----ALREK-GENPHVLVMTATPIPRTLAM 426 (681)
T ss_pred HH----HHHhc-CCCCCEEEEeCCCCHHHHHH
Confidence 22 22222 34689999999976554433
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.86 E-value=5.2e-21 Score=172.13 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=116.6
Q ss_pred ccCCCCCeEEEECCCCchHhHH---------HHHHHHHHhcC--CCCCCceEEEEcccHHHHHHHHHHHHHHhhc---CC
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA---------FLIPIIHSLRG--PKNLGFRAVIVCPTRELAKQTYNETVRLSEG---LG 109 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~---------~~~~~~~~~~~--~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~---~~ 109 (226)
+.+.++++++++|+||||||.+ |+++.+..+.. ....+.++++++|+++||.|+.+.+.+..++ .+
T Consensus 174 ~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g 253 (675)
T PHA02653 174 EAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDG 253 (675)
T ss_pred HHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCC
Confidence 4667899999999999999987 33444444321 1223568999999999999999988776544 24
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+....|+..+. .........+|+++|++. ....+++++++|+||||.+...+ +.+..+++..
T Consensus 254 ~~v~v~~Gg~~~~--~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~~-----DllL~llk~~ 317 (675)
T PHA02653 254 SPISLKYGSIPDE--LINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQIG-----DIIIAVARKH 317 (675)
T ss_pred ceEEEEECCcchH--HhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccch-----hHHHHHHHHh
Confidence 4455555554321 111122367899999752 12247889999999999987652 3344445444
Q ss_pred CCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 190 SGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.+...|+++||||+|++++.+ .+|+++|..+++.+|
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr 353 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG 353 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC
Confidence 334459999999999988776 689999999988764
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=5.3e-21 Score=162.48 Aligned_cols=158 Identities=19% Similarity=0.162 Sum_probs=108.5
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhh--------
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAA-------- 122 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 122 (226)
++++.+|||+|||.+++.+++..+.. ..+.+++|++|+++|+.|+.+.++.++.. .+....+.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCc
Confidence 57999999999999999999988753 33569999999999999999999998642 222222211100
Q ss_pred ---hh------hCCCcCCCCCEEEECchHHHHhHhcCCCC--CCCC--CccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 123 ---EK------FGPRSAQKFDVLITTPNKLVYLLQMDPPA--LNLA--NVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 123 ---~~------~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~--~~~~--~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
.. ........++|+|+||+++...+...... ..+. ..+++|+||+|.+.+.. ...+..+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~----~~~l~~~l~~l 151 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT----LALILAVLEVL 151 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH----HHHHHHHHHHH
Confidence 00 00001134679999999998876641111 1111 23799999999998752 22255555555
Q ss_pred CCCCceEEEEeeeCchhHHHHHHHhcCC
Q psy12977 190 SGPNLKRGMFSATHTEDVAKWCRRKLKR 217 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~ 217 (226)
...+.|++++|||+|+.+.+++..+...
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCc
Confidence 4567899999999999888888776543
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.84 E-value=1e-19 Score=167.32 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=117.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH-HHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV-RLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
.++++++++||||||||.+|..++++.... +.+++++.|+|++|.|+++.+. .+....+..+....++..
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~----- 88 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES----- 88 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc-----
Confidence 456899999999999999999998876432 3489999999999999999874 445555666655444321
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc-ccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK-LFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~-l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
......+|+|+||+++.+++..+ ..+++++++|+||+|. .++.+ -....+..+.+.+ ++..|+++||||++
T Consensus 89 --~~~~~t~I~v~T~G~Llr~l~~d---~~L~~v~~IIlDEaHER~l~~D--l~L~ll~~i~~~l-r~~lqlilmSATl~ 160 (812)
T PRK11664 89 --KVGPNTRLEVVTEGILTRMIQRD---PELSGVGLVILDEFHERSLQAD--LALALLLDVQQGL-RDDLKLLIMSATLD 160 (812)
T ss_pred --ccCCCCcEEEEChhHHHHHHhhC---CCcCcCcEEEEcCCCccccccc--hHHHHHHHHHHhC-CccceEEEEecCCC
Confidence 12345679999999999988753 4689999999999996 34431 1122334455555 57889999999998
Q ss_pred hhHHHHHHHhcCCCeEEecCCC
Q psy12977 205 EDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 205 ~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.+. +.+|+.++..+.+.+|
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr 179 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGR 179 (812)
T ss_pred HHH---HHHhcCCCCEEEecCc
Confidence 653 4678887777777654
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=1e-19 Score=167.20 Aligned_cols=159 Identities=20% Similarity=0.221 Sum_probs=119.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH-HHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV-RLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
.++.+++++|+||||||.++..++++... .+.+++++.|+|++|.|+++.+. .+....+..+.......
T Consensus 15 ~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~------ 84 (819)
T TIGR01970 15 AAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE------ 84 (819)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc------
Confidence 45689999999999999999999988763 24589999999999999999874 44444555555443321
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc-ccccCccchHHH-HHHHHHhcCCCCceEEEEeeeC
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK-LFEAGVRGFRDQ-LAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~-l~~~~~~~~~~~-i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.....+.+|+|+||+.+.+.+..+ ..++++++||+||+|. .++. ++... +..+.+.+ ++..|+++||||+
T Consensus 85 -~~~s~~t~I~v~T~G~Llr~l~~d---~~L~~v~~VIiDEaHER~L~~---Dl~L~ll~~i~~~l-r~dlqlIlmSATl 156 (819)
T TIGR01970 85 -NKVSRRTRLEVVTEGILTRMIQDD---PELDGVGALIFDEFHERSLDA---DLGLALALDVQSSL-REDLKILAMSATL 156 (819)
T ss_pred -cccCCCCcEEEECCcHHHHHHhhC---cccccCCEEEEeccchhhhcc---chHHHHHHHHHHhc-CCCceEEEEeCCC
Confidence 123456789999999999988753 4689999999999994 6665 34333 33444445 5789999999999
Q ss_pred chhHHHHHHHhcCCCeEEecCCC
Q psy12977 204 TEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 204 ~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
+.+. +.+|+.++..|.+.+|
T Consensus 157 ~~~~---l~~~l~~~~vI~~~gr 176 (819)
T TIGR01970 157 DGER---LSSLLPDAPVVESEGR 176 (819)
T ss_pred CHHH---HHHHcCCCcEEEecCc
Confidence 9664 4678877777776654
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.84 E-value=9.5e-20 Score=154.51 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=112.8
Q ss_pred ccccc-cCCCCC--eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC----CCeE
Q psy12977 40 FTITY-LSPLGR--QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL----GLRA 112 (226)
Q Consensus 40 Q~~~~-~~~~~~--~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~----~~~~ 112 (226)
|.+++ .+.++. ++++.+|||+|||.+++++++.. +.+++|++|+++|++|+.+.++++.... +..+
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 55554 333333 47899999999999999988742 2368999999999999999999987543 3444
Q ss_pred EEEecchhhhh-hhC------------------CCcCCCCCEEEECchHHHHhHhcCC---CCC---CCCCccEEEEccc
Q psy12977 113 HVIGKIQQAAE-KFG------------------PRSAQKFDVLITTPNKLVYLLQMDP---PAL---NLANVEWLIVDES 167 (226)
Q Consensus 113 ~~~~~~~~~~~-~~~------------------~~~~~~~~IiV~Tp~~l~~~~~~~~---~~~---~~~~~~~lViDE~ 167 (226)
....+...... ... ......++|+++||+.+..++.... ... .+.+++++|+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 44444422110 000 0013468999999999987665321 111 2578999999999
Q ss_pred ccccccCccc--hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHh--cCCCe
Q psy12977 168 DKLFEAGVRG--FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRK--LKRRV 219 (226)
Q Consensus 168 h~l~~~~~~~--~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~--~~~p~ 219 (226)
|.+....... +......+++.. ....+++++|||+|+.+.+.+... +.+|+
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~ 209 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQNAKQAGVKI 209 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHhccccCcee
Confidence 9876542111 112333333333 235799999999999988888765 44443
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=3e-19 Score=151.32 Aligned_cols=165 Identities=18% Similarity=0.147 Sum_probs=129.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
-.+|.++..|||-|||+.+++.+...+.+. .+ ++|+++||+.|+.|.++.+.+...-....+..+.|.....++..
T Consensus 28 l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~- 103 (542)
T COG1111 28 LFKNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREE- 103 (542)
T ss_pred hhcCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHH-
Confidence 346999999999999999998888888753 23 89999999999999999999998776777777777766554432
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch--
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE-- 205 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~-- 205 (226)
...+.+|+|+||+.+.+.+.. +.+++.++.++|+||||+..+.- .|..-.+..++.- .++.++++|||+-.
T Consensus 104 -~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGny--AYv~Va~~y~~~~--k~~~ilgLTASPGs~~ 176 (542)
T COG1111 104 -LWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGNY--AYVFVAKEYLRSA--KNPLILGLTASPGSDL 176 (542)
T ss_pred -HHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCcc--hHHHHHHHHHHhc--cCceEEEEecCCCCCH
Confidence 345677999999999999998 89999999999999999987752 3555555555543 67899999999774
Q ss_pred -hHHHHHHHhcCCCeEEec
Q psy12977 206 -DVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 206 -~~~~~~~~~~~~p~~i~~ 223 (226)
.+.+.++...-+.+.+..
T Consensus 177 ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 177 EKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred HHHHHHHHhCCcceEEEec
Confidence 455555554445554443
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.81 E-value=1.4e-19 Score=159.80 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=105.3
Q ss_pred cCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 34 KHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 34 ~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
..+.+.|..+ ...+.+++.++++|||+|||..+...+...+.. ...+++|++||++|+.|+.+.++++.......+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 4677788765 455677889999999999998764432222222 233899999999999999999998875444444
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
..+.++... ....+|+|+|++++.+... ..+++++++|+||||++.+. . +..++..+ ++
T Consensus 190 ~~i~~g~~~--------~~~~~I~VaT~qsl~~~~~-----~~~~~~~~iIvDEaH~~~~~---~----~~~il~~~-~~ 248 (501)
T PHA02558 190 HKIYSGTAK--------DTDAPIVVSTWQSAVKQPK-----EWFDQFGMVIVDECHLFTGK---S----LTSIITKL-DN 248 (501)
T ss_pred eEEecCccc--------CCCCCEEEeeHHHHhhchh-----hhccccCEEEEEchhcccch---h----HHHHHHhh-hc
Confidence 344443211 1347899999999876432 23678999999999998764 2 34455555 34
Q ss_pred CceEEEEeeeCchh
Q psy12977 193 NLKRGMFSATHTED 206 (226)
Q Consensus 193 ~~q~v~~SAT~~~~ 206 (226)
..+++++|||+++.
T Consensus 249 ~~~~lGLTATp~~~ 262 (501)
T PHA02558 249 CKFKFGLTGSLRDG 262 (501)
T ss_pred cceEEEEeccCCCc
Confidence 67899999998753
No 69
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.4e-19 Score=164.51 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=113.8
Q ss_pred HHHHHHHHh-----hccccCC---CCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 21 IVTTLAVVS-----NSIFKHF---EPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 21 ~~~~l~~~~-----~~~~~~~---~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
.......+. .++|+.+ +|.|.+. +.+..+++++..++||+|||++|++|++..+... ..++|++||+
T Consensus 70 ~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g----~~v~IVTpTr 145 (970)
T PRK12899 70 VKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG----KPVHLVTVND 145 (970)
T ss_pred CHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc----CCeEEEeCCH
Confidence 344444444 5677776 8998666 4777889999999999999999999999777532 2489999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCCCCCCCC-------CccEEE
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDPPALNLA-------NVEWLI 163 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~~~~~~~-------~~~~lV 163 (226)
+||.|..+.+..+.++++.++..+.++.....+... .++||+|+||+++ +++++. +.+.++ .+.++|
T Consensus 146 ELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~---y~~DIVygTPgRLgfDyLrd--~~~~~~~~~~vqr~~~~~I 220 (970)
T PRK12899 146 YLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI---YQCDVVYGTASEFGFDYLRD--NSIATRKEEQVGRGFYFAI 220 (970)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH---cCCCEEEECCChhHHHHhhC--CCCCcCHHHhhcccccEEE
Confidence 999999999999999999999888777655544322 3699999999999 999886 444444 458999
Q ss_pred Ecccccccc
Q psy12977 164 VDESDKLFE 172 (226)
Q Consensus 164 iDE~h~l~~ 172 (226)
+||||.++-
T Consensus 221 IDEADsmLi 229 (970)
T PRK12899 221 IDEVDSILI 229 (970)
T ss_pred Eechhhhhh
Confidence 999998863
No 70
>KOG0354|consensus
Probab=99.80 E-value=4.7e-19 Score=157.44 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=114.5
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
..+ |+|+++++|||+|||+.++..+++.+++.+. .++|+++|++.|+.|+...++.++.. ..+....++......
T Consensus 73 ~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~--~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~ 147 (746)
T KOG0354|consen 73 PAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK--GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN 147 (746)
T ss_pred Hhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc--ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc
Confidence 445 9999999999999999999999999987655 59999999999999999777666543 333333343222222
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCC-CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALN-LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~-~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
. ..+....+|+++||+.+.+.+.. +..+ ++++.++|+||||+-.... .|..-+...+ .......|++++|||+
T Consensus 148 r-~~i~~s~~vff~TpQil~ndL~~--~~~~~ls~fs~iv~DE~Hra~kn~--~Y~~Vmr~~l-~~k~~~~qILgLTASp 221 (746)
T KOG0354|consen 148 R-GEIVASKRVFFRTPQILENDLKS--GLHDELSDFSLIVFDECHRTSKNH--PYNNIMREYL-DLKNQGNQILGLTASP 221 (746)
T ss_pred h-hhhhcccceEEeChHhhhhhccc--ccccccceEEEEEEcccccccccc--cHHHHHHHHH-HhhhccccEEEEecCC
Confidence 1 24556789999999999999887 3333 6999999999999987762 3444443443 3334556999999998
Q ss_pred chhHHHH
Q psy12977 204 TEDVAKW 210 (226)
Q Consensus 204 ~~~~~~~ 210 (226)
.....+.
T Consensus 222 G~~~~~v 228 (746)
T KOG0354|consen 222 GSKLEQV 228 (746)
T ss_pred CccHHHH
Confidence 8554433
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.79 E-value=2.4e-18 Score=147.73 Aligned_cols=177 Identities=19% Similarity=0.154 Sum_probs=136.2
Q ss_pred HHHHHHHHhhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 21 IVTTLAVVSNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
....-+-+..++++++.|+|..+. =++.|+|.++.++|+||||+..-++-+..+.. .+.+.++++|..+||+|-+
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~KmlfLvPLVALANQKy 278 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKMLFLVPLVALANQKY 278 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeEEEEehhHHhhcchH
Confidence 445556678899999999997774 66899999999999999999988876666543 3568999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
+.+++-...++.++..-.|..--.... ......++||||+|.+-+-.+++. + -.+.++..+||||+|.+-+...
T Consensus 279 ~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g-~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 279 EDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--G-KDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred HHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--C-CcccccceEEeeeeeeccchhc
Confidence 999999999998887666553222221 123356789999999999888886 3 6689999999999998876432
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..-.+.+..-++.+ -+..|++.+|||.-
T Consensus 356 G~RLdGLI~RLr~l-~~~AQ~i~LSATVg 383 (830)
T COG1202 356 GPRLDGLIGRLRYL-FPGAQFIYLSATVG 383 (830)
T ss_pred ccchhhHHHHHHHh-CCCCeEEEEEeecC
Confidence 23344444444444 36899999999953
No 72
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.79 E-value=6.7e-18 Score=123.37 Aligned_cols=144 Identities=30% Similarity=0.377 Sum_probs=104.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+++++.+|||+|||..++..+...... ....++++++|++.++.|+.+.+...... +..+....+........ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE-KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH-HHh
Confidence 468999999999999988888777754 23459999999999999999988888765 55555555543322221 223
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
....+|+++|++.+.+.... ........+++|+||+|.+.... ......... .......+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~---~~~~~~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQG---FGLLGLKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHc--CCcchhcCCEEEEeCHHHHhhcc---hHHHHHHHH-hhCCccceEEEEeccC
Confidence 46789999999999988876 33446678999999999887662 222211112 2225788999999995
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=2.2e-18 Score=159.81 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=118.5
Q ss_pred CCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 36 FEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 36 ~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
+.+.|.........+|.++++|||+|||.+++.++...+.. .+.+++|++|+++|+.|+.+.++.+....+..+..+
T Consensus 16 ~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred ccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 44456554422233499999999999999998888877742 345999999999999999999998875444566666
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCce
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLK 195 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q 195 (226)
.|+.....+. ....+++|+|+||+.+...+.. +.+++.+++++|+||||++.+. .....+...+... ++.++
T Consensus 93 ~g~~~~~~r~--~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~---~~~~~i~~~~~~~-~~~~~ 164 (773)
T PRK13766 93 TGEVSPEKRA--ELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGN---YAYVYIAERYHED-AKNPL 164 (773)
T ss_pred eCCCCHHHHH--HHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccc---ccHHHHHHHHHhc-CCCCE
Confidence 6654332221 2234678999999999887766 6778899999999999998765 2333333333333 35678
Q ss_pred EEEEeeeCch---hHHHHHHHh
Q psy12977 196 RGMFSATHTE---DVAKWCRRK 214 (226)
Q Consensus 196 ~v~~SAT~~~---~~~~~~~~~ 214 (226)
++++|||+.. .+.+.++..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L 186 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENL 186 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhC
Confidence 9999999743 344444443
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.76 E-value=1.5e-17 Score=151.32 Aligned_cols=159 Identities=23% Similarity=0.207 Sum_probs=111.6
Q ss_pred CCCCcccccc-cCCC---CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC
Q psy12977 35 HFEPHFTITY-LSPL---GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL 110 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~---~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~ 110 (226)
++++.|..+. .+.+ +++.++.++||+|||.+|+.++...+.. +.++++++|+++|+.|+.+.+++.+ +.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---GA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CC
Confidence 4677776554 2233 4789999999999999998887777653 5689999999999999999988754 55
Q ss_pred eEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc---hHHHHHH
Q psy12977 111 RAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG---FRDQLAV 184 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~---~~~~i~~ 184 (226)
.+..+.++....++. .....+.++|+|+|++.+. .++++++++|+||+|.......+. ....+..
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 666666654433222 1223456899999998753 347889999999999765432111 1233433
Q ss_pred HHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 185 IYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 185 i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
.... ..+.|++++|||++.+....+
T Consensus 288 ~ra~--~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 288 VRAK--LENIPVVLGSATPSLESLANA 312 (679)
T ss_pred HHhh--ccCCCEEEEcCCCCHHHHHHH
Confidence 3322 368899999999886665554
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.2e-17 Score=153.72 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=133.7
Q ss_pred HhhccccCCCCcc-cccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 28 VSNSIFKHFEPHF-TITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 28 ~~~~~~~~~~~~Q-~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
.++.+|+ +-+.| +....+..+++++++||||+|||+..-+++...+.+ +.+++|.+|.++|.+|.+..+...+.
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHHHHHhh
Confidence 3444444 34555 445688889999999999999999988888777764 44699999999999999999888876
Q ss_pred cCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
+....+....|+. .+..++.++|.|.+.|.+++.+ +...+..+..||+||+|.+.+.. -.-.+...+
T Consensus 188 dv~~~vGL~TGDv--------~IN~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~e---RG~VWEE~I 254 (1041)
T COG4581 188 DVADMVGLMTGDV--------SINPDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRE---RGVVWEEVI 254 (1041)
T ss_pred hhhhhccceecce--------eeCCCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccc---cchhHHHHH
Confidence 5522334444442 2446788999999999999988 67789999999999999998873 444555566
Q ss_pred HhcCCCCceEEEEeeeCc--hhHHHHHHHhcCCCeEE
Q psy12977 187 AACSGPNLKRGMFSATHT--EDVAKWCRRKLKRRVQI 221 (226)
Q Consensus 187 ~~~~~~~~q~v~~SAT~~--~~~~~~~~~~~~~p~~i 221 (226)
-.+ +...+++++|||.| .+...|+.+.-..|.++
T Consensus 255 i~l-P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~v 290 (1041)
T COG4581 255 ILL-PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHV 290 (1041)
T ss_pred Hhc-CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEE
Confidence 566 66789999999977 56788888765555443
No 76
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.1e-17 Score=146.69 Aligned_cols=171 Identities=21% Similarity=0.260 Sum_probs=133.0
Q ss_pred hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 30 NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
-+||..|.+-|.... ..++|+|+++..|||.||++||.+|++-. ..-+||++|..+|+..+.+.++..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~---- 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA---- 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc----
Confidence 467999999996664 88899999999999999999999998664 126899999999999999988877
Q ss_pred CCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC--ccchHHHHH
Q psy12977 109 GLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG--VRGFRDQLA 183 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~--~~~~~~~i~ 183 (226)
|+....+++.....+.. .....+..+++.-+|+++..-... ..+.-..+.+++|||||+++.|+ +|.-...+.
T Consensus 81 Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~--~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 81 GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL--ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH--HHHHhCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 77777777664333332 223345679999999999764333 34446678899999999999997 444455556
Q ss_pred HHHHhcCCCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 184 VIYAACSGPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 184 ~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
.+...+ ++.+++++|||-++.+.+.+.+.+
T Consensus 159 ~l~~~~--~~~p~~AlTATA~~~v~~DI~~~L 188 (590)
T COG0514 159 RLRAGL--PNPPVLALTATATPRVRDDIREQL 188 (590)
T ss_pred HHHhhC--CCCCEEEEeCCCChHHHHHHHHHh
Confidence 666666 488999999999988877777754
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.71 E-value=3.7e-17 Score=147.54 Aligned_cols=151 Identities=23% Similarity=0.165 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
+..+.|+..+.+++..+. .+.++|....+.+. +..++.++||+|||++|.+|++..... +..++|++|+++
T Consensus 48 ld~~l~eafA~vrEa~~R~lglrpydVQlig~l~l~-~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~y 122 (762)
T TIGR03714 48 LDDILPEAYAVVREADKRVLGMFPYDVQVLGAIVLH-QGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDY 122 (762)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHhc-CCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHH
Confidence 345566777777766655 34445544443322 336999999999999999998765543 457999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhh--hhhhCCCcCCCCCEEEECchHH-HHhHhc----CCCCCCCCCccEEEEc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQA--AEKFGPRSAQKFDVLITTPNKL-VYLLQM----DPPALNLANVEWLIVD 165 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~----~~~~~~~~~~~~lViD 165 (226)
||.|..+++..+.+.+|.++....++... .....+...++++|+++||+.+ .+++.. ......+..+.++|+|
T Consensus 123 LA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVD 202 (762)
T TIGR03714 123 LAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVD 202 (762)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEe
Confidence 99999999999999999998876554111 1111122346799999999999 444432 1233457789999999
Q ss_pred ccccccc
Q psy12977 166 ESDKLFE 172 (226)
Q Consensus 166 E~h~l~~ 172 (226)
|||.++-
T Consensus 203 EaDsILi 209 (762)
T TIGR03714 203 EVDSVLL 209 (762)
T ss_pred cHhhHhh
Confidence 9998853
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=7.3e-17 Score=144.91 Aligned_cols=146 Identities=21% Similarity=0.143 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
..+.++-.+.+++..+. .++++|.... .+..|+ +..++||+|||+++.+|++..... +.++.+++||++
T Consensus 35 ~~~l~eafA~vrEa~~R~lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~ 108 (745)
T TIGR00963 35 DDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDY 108 (745)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHH
Confidence 44556666666655554 5677786665 444444 999999999999999998543332 447999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCC----CCCCCCCccEEEEccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDP----PALNLANVEWLIVDES 167 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~----~~~~~~~~~~lViDE~ 167 (226)
||.|.++++..+.+.+++++..+.++.....+. ....++|+++||+.+ +++++... ....+..+.++|+||+
T Consensus 109 LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~---~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEa 185 (745)
T TIGR00963 109 LAQRDAEWMGQVYRFLGLSVGLILSGMSPEERR---EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEV 185 (745)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHH---HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecH
Confidence 999999999999999999999888775544332 334689999999999 77776521 1356889999999999
Q ss_pred ccccc
Q psy12977 168 DKLFE 172 (226)
Q Consensus 168 h~l~~ 172 (226)
|.++-
T Consensus 186 Ds~LI 190 (745)
T TIGR00963 186 DSILI 190 (745)
T ss_pred HHHhH
Confidence 98864
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=3.5e-16 Score=137.87 Aligned_cols=141 Identities=24% Similarity=0.176 Sum_probs=98.6
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh---hCCCc
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK---FGPRS 129 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 129 (226)
++.||||+|||.+|+..+...+.. +.+++|++|+++|+.|+.+.+++.+ +..+..+.++....++ .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHH
Confidence 478999999999997766555543 5589999999999999999998765 4556556554433222 22223
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc---chHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR---GFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~---~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
.+.++|+|+|+..+. .++.+++++|+||.|.......+ .....+....... .+.+++++|||++.+
T Consensus 74 ~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~--~~~~vil~SATPsle 142 (505)
T TIGR00595 74 NGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK--FNCPVVLGSATPSLE 142 (505)
T ss_pred cCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh--cCCCEEEEeCCCCHH
Confidence 456899999998663 34778999999999987643211 1233444444443 688999999997765
Q ss_pred HHHHH
Q psy12977 207 VAKWC 211 (226)
Q Consensus 207 ~~~~~ 211 (226)
....+
T Consensus 143 s~~~~ 147 (505)
T TIGR00595 143 SYHNA 147 (505)
T ss_pred HHHHH
Confidence 54444
No 80
>KOG0951|consensus
Probab=99.70 E-value=5.8e-17 Score=148.79 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=129.5
Q ss_pred cccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC-------CCceEEEEcccHHHHHHHHHHHH
Q psy12977 32 IFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN-------LGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 32 ~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~-------~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
+.+.++.+|+... .+-...|++++||||+|||-.+++.+++.+..+.. ...+++|++|.++|+..+...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 4456888886554 44455789999999999999999999999865433 24589999999999999999999
Q ss_pred HHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHH
Q psy12977 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQL 182 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i 182 (226)
+....+|+++....|+...... -....+|+||||++.--.-+..+..--.+-++++|+||.|.+-|..+.....-+
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~----qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKE----QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccchhh----hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHH
Confidence 9999999999988887542222 235678999999997555444333333556899999999987666433333344
Q ss_pred HHHHHhc--CCCCceEEEEeeeCch--hHHHHH
Q psy12977 183 AVIYAAC--SGPNLKRGMFSATHTE--DVAKWC 211 (226)
Q Consensus 183 ~~i~~~~--~~~~~q~v~~SAT~~~--~~~~~~ 211 (226)
.+..+.. ....+.++++|||+|. ++..|+
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl 494 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPNYEDVASFL 494 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCchhhhHHHh
Confidence 4444333 2357899999999994 555554
No 81
>PRK09694 helicase Cas3; Provisional
Probab=99.69 E-value=2.6e-16 Score=145.19 Aligned_cols=171 Identities=17% Similarity=0.049 Sum_probs=111.1
Q ss_pred CCCCcccccccC-CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC--CCe
Q psy12977 35 HFEPHFTITYLS-PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL--GLR 111 (226)
Q Consensus 35 ~~~~~Q~~~~~~-~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~--~~~ 111 (226)
.++|.|+..... .....+++.+|||+|||.+++..+...... ....+++|.+||+++++|+++.+.++.+.. ...
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 678888766422 345678999999999999987765544432 224589999999999999999988754322 234
Q ss_pred EEEEecchhhhhhh--------------------------CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC----CccE
Q psy12977 112 AHVIGKIQQAAEKF--------------------------GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA----NVEW 161 (226)
Q Consensus 112 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~----~~~~ 161 (226)
+....+.......+ .+...--++|+|||..+++...... +...+. .-++
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~-kh~~lR~~~La~sv 442 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPV-KHRFIRGFGLGRSV 442 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHcc-chHHHHHHhhccCe
Confidence 44444433211100 0011122799999999998654331 111111 2359
Q ss_pred EEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHH
Q psy12977 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCR 212 (226)
Q Consensus 162 lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~ 212 (226)
||+||+|..-. .....+...++.+......+++||||+|+...+.+.
T Consensus 443 vIiDEVHAyD~----ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 443 LIVDEVHAYDA----YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred EEEechhhCCH----HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 99999997632 244456666666655678899999999988765443
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.7e-16 Score=144.33 Aligned_cols=145 Identities=23% Similarity=0.201 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
..+.++..+.+++..+. .++++|.... .+..|+ +..+.||+|||+++.+|++..... |.++.+++||++
T Consensus 57 ~~~~~eafA~vrea~~R~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~ 130 (790)
T PRK09200 57 DDILPEAFAVVREAAKRVLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDY 130 (790)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHH
Confidence 44566777777765554 6667776554 444555 999999999999999998855443 668999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchh-hhhhhCCCcCCCCCEEEECchHH-HHhHhc----CCCCCCCCCccEEEEcc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQ-AAEKFGPRSAQKFDVLITTPNKL-VYLLQM----DPPALNLANVEWLIVDE 166 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~----~~~~~~~~~~~~lViDE 166 (226)
||.|.++.+..+.+.+++++..+.++.. ...+. ...++||+++||+.+ .+++.. .........++++|+||
T Consensus 131 LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~---~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDE 207 (790)
T PRK09200 131 LAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKK---AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDE 207 (790)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHH---HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEec
Confidence 9999999999999999999998887765 33332 346799999999999 444432 11223567899999999
Q ss_pred ccccc
Q psy12977 167 SDKLF 171 (226)
Q Consensus 167 ~h~l~ 171 (226)
+|.++
T Consensus 208 aDsiL 212 (790)
T PRK09200 208 IDSIL 212 (790)
T ss_pred cccce
Confidence 99875
No 83
>KOG0349|consensus
Probab=99.68 E-value=1.1e-16 Score=133.57 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=110.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCC---CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLG---LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
.++++|+-|+++|++|+.+.++++..+.. .+.....++...... -..+..+.+|+|+||+++.+.+.. +.+.+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q-~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt 362 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQ-CKQLKDGTHIVVGTPGRLLQPISK--GLVTLT 362 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHH-HHHhhcCceeeecCchhhhhhhhc--cceeee
Confidence 36899999999999999998888865542 232233333222222 233567899999999999999998 888899
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCC-----CCceEEEEeeeCc-hhHHHHHHHhcCCCeEEecCC
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG-----PNLKRGMFSATHT-EDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~-----~~~q~v~~SAT~~-~~~~~~~~~~~~~p~~i~~~~ 225 (226)
.++++|+||+|.++.. ++.+.|.++..+++. .+.|.+++|||+. =+++...++.|+.|+.+.+++
T Consensus 363 ~crFlvlDead~lL~q---gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg 433 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQ---GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG 433 (725)
T ss_pred eeEEEEecchhhhhhc---ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc
Confidence 9999999999999998 688888888887742 4689999999987 477888889999999998764
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.68 E-value=7.7e-16 Score=145.41 Aligned_cols=156 Identities=24% Similarity=0.254 Sum_probs=100.3
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHH-HHHHhcCCCCCCceEEEEcc----cHHHHHHHHHHHHH-HhhcCCCeEEEEecc
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIP-IIHSLRGPKNLGFRAVIVCP----TRELAKQTYNETVR-LSEGLGLRAHVIGKI 118 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~-~~~~~~~~~~~~~~~iil~P----t~~L~~q~~~~~~~-~~~~~~~~~~~~~~~ 118 (226)
.+.++..++++|+||||||.. +| ++..... .....+++..| ++++|.|+.+++.. ++...|..+
T Consensus 85 ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v------ 154 (1294)
T PRK11131 85 AIRDHQVVIVAGETGSGKTTQ--LPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV------ 154 (1294)
T ss_pred HHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee------
Confidence 444566788999999999984 66 3332221 11123444456 56888888887754 333223221
Q ss_pred hhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccc-cccccCccchHH-HHHHHHHhcCCCCceE
Q psy12977 119 QQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD-KLFEAGVRGFRD-QLAVIYAACSGPNLKR 196 (226)
Q Consensus 119 ~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h-~l~~~~~~~~~~-~i~~i~~~~~~~~~q~ 196 (226)
.+......+++|+++||+.+.+.+..+ ..+++++++|+|||| ++++. ++.. .++.++.. .+..|+
T Consensus 155 -----rf~~~~s~~t~I~v~TpG~LL~~l~~d---~~Ls~~~~IIIDEAHERsLn~---DfLLg~Lk~lL~~--rpdlKv 221 (1294)
T PRK11131 155 -----RFNDQVSDNTMVKLMTDGILLAEIQQD---RLLMQYDTIIIDEAHERSLNI---DFILGYLKELLPR--RPDLKV 221 (1294)
T ss_pred -----cCccccCCCCCEEEEChHHHHHHHhcC---CccccCcEEEecCcccccccc---chHHHHHHHhhhc--CCCceE
Confidence 222233467899999999999998863 338999999999999 57776 4543 34444332 256899
Q ss_pred EEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 197 GMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 197 v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
++||||++. +.+.+.+.+.| .+++.+|
T Consensus 222 ILmSATid~--e~fs~~F~~ap-vI~V~Gr 248 (1294)
T PRK11131 222 IITSATIDP--ERFSRHFNNAP-IIEVSGR 248 (1294)
T ss_pred EEeeCCCCH--HHHHHHcCCCC-EEEEcCc
Confidence 999999975 35554444445 5777654
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.3e-16 Score=139.77 Aligned_cols=146 Identities=24% Similarity=0.242 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
...+.++-.+.+++..+. .++++|.... .++.|+ +..+.||+|||+++.+|++..... +++++|++||+
T Consensus 81 ~~~~l~eafA~~rEa~~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptr 154 (656)
T PRK12898 81 RDALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVND 154 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcH
Confidence 345566666666665554 6778996664 667777 999999999999999999987653 67999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHH-HhHhcC--------------------
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLV-YLLQMD-------------------- 150 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~-~~~~~~-------------------- 150 (226)
+||.|.++.+..+.+.+++++.++.++..... +....++||+++|...+- +++...
T Consensus 155 eLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~---r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~ 231 (656)
T PRK12898 155 YLAERDAELMRPLYEALGLTVGCVVEDQSPDE---RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGR 231 (656)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHH---HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccc
Confidence 99999999999999999999998888754332 234578999999999884 343221
Q ss_pred ---CCCCCCCCccEEEEccccccc
Q psy12977 151 ---PPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 151 ---~~~~~~~~~~~lViDE~h~l~ 171 (226)
........+.+.|+||+|.++
T Consensus 232 ~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 232 SSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred cCchhhhcccccceeEeeccccee
Confidence 011224567899999999775
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=2.6e-16 Score=120.85 Aligned_cols=141 Identities=23% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE----------ecc
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI----------GKI 118 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~----------~~~ 118 (226)
+++.++.+|||+|||..++..+..... ++++++|+..|++|+.+.+..+........... ...
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISI 97 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETT
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence 588999999999999988755554443 899999999999999999966654321111100 000
Q ss_pred hhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC---------CCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 119 QQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP---------PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 119 ~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~---------~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
...............+++++|.+.+........ ........+++|+||||+..+. .- ...++.
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~---~~---~~~i~~-- 169 (184)
T PF04851_consen 98 QDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSD---SS---YREIIE-- 169 (184)
T ss_dssp TTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHH---HH---HHHHHH--
T ss_pred ccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCH---HH---HHHHHc--
Confidence 000011011224567899999999998765411 1123456789999999998765 21 333333
Q ss_pred CCCCceEEEEeeeCch
Q psy12977 190 SGPNLKRGMFSATHTE 205 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~ 205 (226)
.+...+++||||+++
T Consensus 170 -~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 170 -FKAAFILGLTATPFR 184 (184)
T ss_dssp -SSCCEEEEEESS-S-
T ss_pred -CCCCeEEEEEeCccC
Confidence 367789999999863
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.3e-16 Score=140.89 Aligned_cols=144 Identities=26% Similarity=0.231 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
..+.|.-.+.+++.... .+..+|-... .+..|+ +..++||+|||+++.+|++..... +..+.|++||++
T Consensus 61 d~~l~eafA~vrEa~~R~lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----G~~V~VvTpn~y 134 (896)
T PRK13104 61 DELLAEAFATVREVSLRTLGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----GRGVHIVTVNDY 134 (896)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----CCCEEEEcCCHH
Confidence 44556666666665555 3444565444 333344 789999999999999999976643 346999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCCCCCCC-----CCccEEEEcc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDPPALNL-----ANVEWLIVDE 166 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~~~~~~-----~~~~~lViDE 166 (226)
||.|.++++..+.+.++.++.++.++.....+. ....+||+++||+.+ +++++.. -..++ ..+.++|+||
T Consensus 135 LA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~---~~y~~dIvygT~grlgfDyLrd~-~~~~~~~~v~r~l~~~IvDE 210 (896)
T PRK13104 135 LAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQ---EAYKADIVYGTNNEYGFDYLRDN-MAFSLTDKVQRELNFAIVDE 210 (896)
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCCCHHHHH---HHhCCCEEEECChhhhHHHHhcC-CccchHhhhccccceEEecc
Confidence 999999999999999999999888775544432 335789999999999 8888752 12333 5899999999
Q ss_pred ccccc
Q psy12977 167 SDKLF 171 (226)
Q Consensus 167 ~h~l~ 171 (226)
+|.++
T Consensus 211 aDsiL 215 (896)
T PRK13104 211 VDSIL 215 (896)
T ss_pred Hhhhh
Confidence 99875
No 88
>KOG0947|consensus
Probab=99.62 E-value=1.8e-15 Score=136.11 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=126.0
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++.+.|+++. .+..|..+.+.|+|.+|||..+.+++...-. .+.|+||.+|-++|.+|-++.+++-+.+.|
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg---- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPIKALSNQKFRDFKETFGDVG---- 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchhhhhccchHHHHHHhccccc----
Confidence 3445687774 7888999999999999999987666544332 245899999999999999999999887766
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
.+.|+.. +...+.++|.|.+.|.+++.+ +.--..+++++|+||+|-+.|.. -.-.+.+++-.+ +..
T Consensus 369 LlTGDvq--------inPeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~e---RGvVWEEViIMl-P~H 434 (1248)
T KOG0947|consen 369 LLTGDVQ--------INPEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVE---RGVVWEEVIIML-PRH 434 (1248)
T ss_pred eeeccee--------eCCCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeeccccc---ccccceeeeeec-ccc
Confidence 4444421 334567999999999999988 56667889999999999988763 333444555455 678
Q ss_pred ceEEEEeeeCch--hHHHHHHHhcCCCeEE
Q psy12977 194 LKRGMFSATHTE--DVAKWCRRKLKRRVQI 221 (226)
Q Consensus 194 ~q~v~~SAT~~~--~~~~~~~~~~~~p~~i 221 (226)
.+++++|||.|. +..+|+.+.-+..+++
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyV 464 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYV 464 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEE
Confidence 999999999884 6688888876555444
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.58 E-value=4.8e-14 Score=133.72 Aligned_cols=177 Identities=20% Similarity=0.153 Sum_probs=110.2
Q ss_pred hccccCCCCccccc----ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 30 NSIFKHFEPHFTIT----YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~----~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
...|..-.|+.... ..+.++..++++|+||||||.. +|.+-.-. ......++++..|.|--|..+++.+.+-
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~-~~~~~~~I~~tQPRRlAA~svA~RvA~e- 134 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLEL-GRGSHGLIGHTQPRRLAARTVAQRIAEE- 134 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHc-CCCCCceEecCCccHHHHHHHHHHHHHH-
Confidence 34455556665332 2444567789999999999984 45332211 1122235666778777666665543332
Q ss_pred hcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccc-cccccCccchHHH-HH
Q psy12977 106 EGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD-KLFEAGVRGFRDQ-LA 183 (226)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h-~l~~~~~~~~~~~-i~ 183 (226)
.+..+....|+. ..+......++.|.++|++.|.+.+..++ .+++++++|+||+| +.++. ++... ++
T Consensus 135 --lg~~lG~~VGY~---vR~~~~~s~~T~I~~~TdGiLLr~l~~d~---~L~~~~~IIIDEaHERsL~~---D~LL~lLk 203 (1283)
T TIGR01967 135 --LGTPLGEKVGYK---VRFHDQVSSNTLVKLMTDGILLAETQQDR---FLSRYDTIIIDEAHERSLNI---DFLLGYLK 203 (1283)
T ss_pred --hCCCcceEEeeE---EcCCcccCCCceeeeccccHHHHHhhhCc---ccccCcEEEEcCcchhhccc---hhHHHHHH
Confidence 233333333332 22223345678899999999999987643 48899999999999 57776 45543 55
Q ss_pred HHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 184 VIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 184 ~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.++... +..|+++||||++. ..+. +++.+.-.+++.+|
T Consensus 204 ~il~~r--pdLKlIlmSATld~--~~fa-~~F~~apvI~V~Gr 241 (1283)
T TIGR01967 204 QLLPRR--PDLKIIITSATIDP--ERFS-RHFNNAPIIEVSGR 241 (1283)
T ss_pred HHHhhC--CCCeEEEEeCCcCH--HHHH-HHhcCCCEEEECCC
Confidence 565443 67899999999974 3444 44544445666654
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=1.1e-14 Score=126.69 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=93.8
Q ss_pred CCCCcccccc--cCCC---CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 35 HFEPHFTITY--LSPL---GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 35 ~~~~~Q~~~~--~~~~---~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
.+.+.|.++. +... ++..++++|||+|||..++..+..... +++|++|+++|+.|+.+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~-------~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR-------STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC-------CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 4667776663 2222 788999999999999987665544322 39999999999999987776665432
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
......+++..... . ..|.|+|-+.+...-.. ........+++|+||||++.+. .+.. +.......
T Consensus 108 ~~~g~~~~~~~~~~-------~-~~i~vat~qtl~~~~~l--~~~~~~~~~liI~DE~Hh~~a~---~~~~-~~~~~~~~ 173 (442)
T COG1061 108 DEIGIYGGGEKELE-------P-AKVTVATVQTLARRQLL--DEFLGNEFGLIIFDEVHHLPAP---SYRR-ILELLSAA 173 (442)
T ss_pred cccceecCceeccC-------C-CcEEEEEhHHHhhhhhh--hhhcccccCEEEEEccccCCcH---HHHH-HHHhhhcc
Confidence 22333333321100 1 46999999988774211 1222337899999999999876 2322 22222211
Q ss_pred CCCCceEEEEeeeCchh
Q psy12977 190 SGPNLKRGMFSATHTED 206 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~~ 206 (226)
..++++|||++..
T Consensus 174 ----~~~LGLTATp~R~ 186 (442)
T COG1061 174 ----YPRLGLTATPERE 186 (442)
T ss_pred ----cceeeeccCceee
Confidence 1289999998843
No 91
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=2.7e-14 Score=129.03 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=96.8
Q ss_pred CCCCcccccc--cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC
Q psy12977 35 HFEPHFTITY--LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL 110 (226)
Q Consensus 35 ~~~~~Q~~~~--~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~ 110 (226)
.+.|.|..+. ++.++ +.-++++|||+|||+..+..+.. + +.++||+||+..|++||.+.+.++......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 3455665542 33334 46799999999999987655443 2 236999999999999999999988654444
Q ss_pred eEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC------CCCCCCCccEEEEcccccccccCccchHHHHHH
Q psy12977 111 RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP------PALNLANVEWLIVDESDKLFEAGVRGFRDQLAV 184 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~------~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~ 184 (226)
.+....++... ......+|+|+|.+.+.....+.. ..+.-..++++|+||||++.+. ...+
T Consensus 328 ~I~~~tg~~k~------~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-------~fr~ 394 (732)
T TIGR00603 328 QICRFTSDAKE------RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-------MFRR 394 (732)
T ss_pred eEEEEecCccc------ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-------HHHH
Confidence 55544443211 112346899999987754322210 1122346789999999998654 2333
Q ss_pred HHHhcCCCCceEEEEeeeCch
Q psy12977 185 IYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 185 i~~~~~~~~~q~v~~SAT~~~ 205 (226)
++..+ .....+++|||+..
T Consensus 395 il~~l--~a~~RLGLTATP~R 413 (732)
T TIGR00603 395 VLTIV--QAHCKLGLTATLVR 413 (732)
T ss_pred HHHhc--CcCcEEEEeecCcc
Confidence 44444 34467899999874
No 92
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.55 E-value=2e-14 Score=104.51 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.|+-.++...||+|||.-.+.-++....+ .+.|++++.|||.+++.+.+.++.. +.++...... .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~--------~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM--------R 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee--------c
Confidence 45567899999999998766555543322 2568999999999999988877543 3322211110 1
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
...++.-|-|.|...+.+++.. .....+++++|+||||. .|. ........+........+.++++|||+|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~-~Dp---~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHF-TDP---TSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT---SH---HHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC---cccccCccEEEEecccc-CCH---HHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 1235566889999998887765 33367999999999996 443 2333333333333234578999999999766
Q ss_pred HHH
Q psy12977 208 AKW 210 (226)
Q Consensus 208 ~~~ 210 (226)
..|
T Consensus 141 ~~f 143 (148)
T PF07652_consen 141 DEF 143 (148)
T ss_dssp -SS
T ss_pred CCC
Confidence 443
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=4e-14 Score=128.93 Aligned_cols=145 Identities=25% Similarity=0.204 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHH-HHhcCCCCCCceEEEEccc
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPII-HSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~-~~~~~~~~~~~~~iil~Pt 90 (226)
...+.++..+.+++.... .+..+|-... .+..|+ +..++||+|||+++.+|++ ..+. +..+-+++||
T Consensus 59 ld~~l~eafA~vrEa~~R~lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~IvTpn 131 (830)
T PRK12904 59 LDDLLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----GKGVHVVTVN 131 (830)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----CCCEEEEecC
Confidence 345667777777766654 4556675554 444444 8999999999999999986 5553 3357799999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCCC----CCCCCCccEEEEc
Q psy12977 91 RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDPP----ALNLANVEWLIVD 165 (226)
Q Consensus 91 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~~----~~~~~~~~~lViD 165 (226)
.+||.|.++.+..+.+.+|+++.++.++.....+.. ...+||+++||+.+ +++++.... ......+.++|+|
T Consensus 132 ~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~---~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvD 208 (830)
T PRK12904 132 DYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERRE---AYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVD 208 (830)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHH---hcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEe
Confidence 999999999999999999999998888765544432 24599999999999 778764211 1346788999999
Q ss_pred cccccc
Q psy12977 166 ESDKLF 171 (226)
Q Consensus 166 E~h~l~ 171 (226)
|+|.++
T Consensus 209 EaDsiL 214 (830)
T PRK12904 209 EVDSIL 214 (830)
T ss_pred chhhhe
Confidence 999875
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.52 E-value=2.3e-13 Score=129.06 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=100.4
Q ss_pred CCCcccccc-----cC-CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 36 FEPHFTITY-----LS-PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 36 ~~~~Q~~~~-----~~-~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
+.+.|..+. .+ ...++.++++|||||||...+..+...+.. ....++++++|+++|+.|..+.++.......
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc--CccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 566775542 11 234679999999999998754443333332 2345999999999999999999888743222
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC---CCCCCCCccEEEEccccccccc------C---cc-
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP---PALNLANVEWLIVDESDKLFEA------G---VR- 176 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~---~~~~~~~~~~lViDE~h~l~~~------~---~~- 176 (226)
.....+.+....... .......|+|+|.+++.+.+.... ....+..++++|+||||+.... + ++
T Consensus 492 ~~~~~i~~i~~L~~~---~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 492 QTFASIYDIKGLEDK---FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cchhhhhchhhhhhh---cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 111111111100011 123457899999999877643211 2245778899999999986320 0 00
Q ss_pred --chHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 177 --GFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 177 --~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
.+...+..++..+ +...++||||+...
T Consensus 569 ~~~~~~~yr~iL~yF---dA~~IGLTATP~r~ 597 (1123)
T PRK11448 569 QLDYVSKYRRVLDYF---DAVKIGLTATPALH 597 (1123)
T ss_pred hhhHHHHHHHHHhhc---CccEEEEecCCccc
Confidence 1234566666654 35679999998643
No 95
>KOG0948|consensus
Probab=99.52 E-value=4.9e-14 Score=124.42 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=125.3
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++.|.|+.+. -+..+..++++|.|.+|||..+-+++...++. +.|+||.+|-++|.+|-++.+..=+++.|.-.+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTG 204 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----KQRVIYTSPIKALSNQKYRELLEEFKDVGLMTG 204 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----cCeEEeeChhhhhcchhHHHHHHHhcccceeec
Confidence 3455666665 34557899999999999999999998888874 458999999999999999988777766554332
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
-+. +..++..+|.|.+.|.+++.+ +.--...+..+|+||+|-|-|.. -.-.|.+.+-.+ +.+
T Consensus 205 DVT------------InP~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkE---RGVVWEETIIll-P~~ 266 (1041)
T KOG0948|consen 205 DVT------------INPDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKE---RGVVWEETIILL-PDN 266 (1041)
T ss_pred cee------------eCCCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccc---cceeeeeeEEec-ccc
Confidence 111 234567999999999999988 55567789999999999988763 333344444344 678
Q ss_pred ceEEEEeeeCch--hHHHHHHHhcCCCeEE
Q psy12977 194 LKRGMFSATHTE--DVAKWCRRKLKRRVQI 221 (226)
Q Consensus 194 ~q~v~~SAT~~~--~~~~~~~~~~~~p~~i 221 (226)
.+.+++|||+|. +..+|+-..-+.|.++
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHV 296 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHV 296 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceE
Confidence 999999999995 4577887766677655
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1e-13 Score=126.42 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
+..+.|.-.+.+++.... .+..+|-... .+..|+ +..++||.|||+++.+|++..... +..+.|++|+.
T Consensus 60 l~~~l~eafA~vrEaa~R~lgm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~----g~~VhIvT~nd 133 (908)
T PRK13107 60 LDDIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVITVND 133 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc----CCCEEEEeCCH
Confidence 344556666666665554 4455665554 333444 789999999999999999876653 44599999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCCCCCC-----CCCccEEEEc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDPPALN-----LANVEWLIVD 165 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~~~~~-----~~~~~~lViD 165 (226)
+||.|..+++..+.+.+|.++.++.++.....+ ....++||+++||+.+ +++++.. -... ...+.+.|+|
T Consensus 134 yLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r---~~~Y~~dI~YgT~~e~gfDyLrdn-m~~~~~~~vqr~~~~aIvD 209 (908)
T PRK13107 134 YLARRDAENNRPLFEFLGLTVGINVAGLGQQEK---KAAYNADITYGTNNEFGFDYLRDN-MAFSPQERVQRPLHYALID 209 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH---HhcCCCCeEEeCCCcccchhhhcc-Cccchhhhhccccceeeec
Confidence 999999999999999999999988776554332 3457899999999999 7777642 1222 3778999999
Q ss_pred cccccccc
Q psy12977 166 ESDKLFEA 173 (226)
Q Consensus 166 E~h~l~~~ 173 (226)
|+|.++-+
T Consensus 210 EvDsiLiD 217 (908)
T PRK13107 210 EVDSILID 217 (908)
T ss_pred chhhhccc
Confidence 99988643
No 97
>KOG0353|consensus
Probab=99.50 E-value=9.2e-14 Score=114.74 Aligned_cols=171 Identities=19% Similarity=0.261 Sum_probs=126.0
Q ss_pred hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 30 NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
.+.++.|.|.|..+. ..+.|+++++..|||.||++||.+|++-. ...++++||..+|++...-+++++
T Consensus 89 ~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------dg~alvi~plislmedqil~lkql---- 157 (695)
T KOG0353|consen 89 QFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------DGFALVICPLISLMEDQILQLKQL---- 157 (695)
T ss_pred HhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------CCceEeechhHHHHHHHHHHHHHh----
Confidence 466779999997775 77899999999999999999999997542 337899999999999988888887
Q ss_pred CCeEEEEecchhhhhhh-----CCCcCCCCCEEEECchHHHH---hHhcCCCCCCCCCccEEEEcccccccccCc--cch
Q psy12977 109 GLRAHVIGKIQQAAEKF-----GPRSAQKFDVLITTPNKLVY---LLQMDPPALNLANVEWLIVDESDKLFEAGV--RGF 178 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~IiV~Tp~~l~~---~~~~~~~~~~~~~~~~lViDE~h~l~~~~~--~~~ 178 (226)
|+...+.+.....++.. .........++..||+++.. ++++....+....+.++.+||+|+-..+++ |.-
T Consensus 158 gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 158 GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 55554444433322211 11223456799999999975 444444567788899999999999988863 334
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHH
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRR 213 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~ 213 (226)
...+.-+.+++ ++..+++++||-..++.+.++.
T Consensus 238 y~~l~ilkrqf--~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 238 YKALGILKRQF--KGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred hHHHHHHHHhC--CCCceeeeehhhhcchhhHHHH
Confidence 44555666676 7889999999977666555443
No 98
>KOG0351|consensus
Probab=99.50 E-value=1.8e-14 Score=133.14 Aligned_cols=176 Identities=23% Similarity=0.302 Sum_probs=126.0
Q ss_pred HHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 27 VVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 27 ~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
+-..++.+.|.+.|.++. ..++|+|.++.+|||.||++||.+|++-. +.-+|+|.|..+|++.+...+...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------~gitvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------GGVTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------CCceEEeccHHHHHHHHHHhhhhc-
Confidence 344678889999997665 77899999999999999999999997542 337899999999999877766333
Q ss_pred hcCCCeEEEEecchhhhhhh---CCCcC--CCCCEEEECchHHHHhHhcCCCCCCCCC---ccEEEEcccccccccCc--
Q psy12977 106 EGLGLRAHVIGKIQQAAEKF---GPRSA--QKFDVLITTPNKLVYLLQMDPPALNLAN---VEWLIVDESDKLFEAGV-- 175 (226)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~IiV~Tp~~l~~~~~~~~~~~~~~~---~~~lViDE~h~l~~~~~-- 175 (226)
++....+.+++...+.. ..... ...+|+..||+++...-........+.. +.++|+||||+...|++
T Consensus 328 ---~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 328 ---GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred ---CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 67777776666553221 11112 3579999999998764322112223334 88999999999999874
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
|.....+..+.... +...++++|||-...+.+.+-+.+
T Consensus 405 Rp~Yk~l~~l~~~~--~~vP~iALTATAT~~v~~DIi~~L 442 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRF--PGVPFIALTATATERVREDVIRSL 442 (941)
T ss_pred cHHHHHHHHHHhhC--CCCCeEEeehhccHHHHHHHHHHh
Confidence 33344444555555 458999999999888876666644
No 99
>KOG0352|consensus
Probab=99.49 E-value=7.7e-14 Score=116.58 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=117.4
Q ss_pred ccccCC-CCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 31 SIFKHF-EPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 31 ~~~~~~-~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
+|+..| ++.|+++. .....+|+.+++|||+||++||.+|.+-. +.-+|++.|..+|...+.+.+..+
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIkDQiDHL~~L--- 84 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIKDQIDHLKRL--- 84 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHHHHHHHHHhc---
Confidence 445444 45687764 55667899999999999999999998653 237899999999999998888777
Q ss_pred CCCeEEEEecchhhh---hhhCC--CcCCCCCEEEECchHHHHhHhc--CCCCCCCCCccEEEEcccccccccCccchHH
Q psy12977 108 LGLRAHVIGKIQQAA---EKFGP--RSAQKFDVLITTPNKLVYLLQM--DPPALNLANVEWLIVDESDKLFEAGVRGFRD 180 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~---~~~~~--~~~~~~~IiV~Tp~~l~~~~~~--~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~ 180 (226)
.+.+...++.-+.. +...+ ....+..++.-||+.......+ .+...+=..+.++|+||+|+...|++. |..
T Consensus 85 -KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD-FRP 162 (641)
T KOG0352|consen 85 -KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD-FRP 162 (641)
T ss_pred -CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc-cCc
Confidence 33333322221111 11111 2234567999999986542211 002333456789999999999998753 444
Q ss_pred HHH---HHHHhcCCCCceEEEEeeeCchhHHHHHHH--hcCCCeEE
Q psy12977 181 QLA---VIYAACSGPNLKRGMFSATHTEDVAKWCRR--KLKRRVQI 221 (226)
Q Consensus 181 ~i~---~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~--~~~~p~~i 221 (226)
+.. .+...+ +....+.++||-.+++++.+.. -+++||-+
T Consensus 163 DYL~LG~LRS~~--~~vpwvALTATA~~~VqEDi~~qL~L~~PVAi 206 (641)
T KOG0352|consen 163 DYLTLGSLRSVC--PGVPWVALTATANAKVQEDIAFQLKLRNPVAI 206 (641)
T ss_pred chhhhhhHHhhC--CCCceEEeecccChhHHHHHHHHHhhcCcHHh
Confidence 333 333333 6789999999998888776654 44577654
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.9e-13 Score=109.03 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCCCcccccc-----cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 35 HFEPHFTITY-----LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 35 ~~~~~Q~~~~-----~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
+++|-|+-+. .+.+.++.+++|-||+|||... +..++...+ .|.++.+.+|..+.|..++..+++.+. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 5666663331 3455789999999999999864 444444332 377899999999999999999999887 4
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+...+++..+.- .++++|+|..+++++.+ .+|++|+||+|.+.-.. ...+....++.
T Consensus 171 ~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~---------aFD~liIDEVDAFP~~~----d~~L~~Av~~a 229 (441)
T COG4098 171 CDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQ---------AFDLLIIDEVDAFPFSD----DQSLQYAVKKA 229 (441)
T ss_pred CCeeeEecCCchhc--------cccEEEEehHHHHHHHh---------hccEEEEeccccccccC----CHHHHHHHHHh
Confidence 55555665543322 26799999999988755 57899999999885442 12333334444
Q ss_pred CCCCceEEEEeeeCchhHHHHHHH
Q psy12977 190 SGPNLKRGMFSATHTEDVAKWCRR 213 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~~~~~~~~~ 213 (226)
..+...++.+|||.+++++.-+..
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhh
Confidence 356778899999999887665543
No 101
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.48 E-value=2.3e-13 Score=123.95 Aligned_cols=140 Identities=22% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
++..+++.+||||||...+..+...+. ....+++++++|+.+|..|+.+.+..+.... .........-... .
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~--~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~---~~~~~s~~~L~~~---l 334 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALE--LLKNPKVFFVVDRRELDYQLMKEFQSLQKDC---AERIESIAELKRL---L 334 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHh--hcCCCeEEEEECcHHHHHHHHHHHHhhCCCC---CcccCCHHHHHHH---H
Confidence 357899999999999887655544442 2345799999999999999999998885321 1111111100011 1
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCc-cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANV-EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~-~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
......|+|+|.+++...+..........+- .++|+||||+.... .+...+. +.+ ++...++||||+-
T Consensus 335 ~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~~~~~l~---~~~--p~a~~lGfTaTP~ 403 (667)
T TIGR00348 335 EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---ELAKNLK---KAL--KNASFFGFTGTPI 403 (667)
T ss_pred hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---HHHHHHH---hhC--CCCcEEEEeCCCc
Confidence 1234689999999998644331111221111 28999999986443 2333332 344 5678999999975
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.44 E-value=9.2e-13 Score=116.30 Aligned_cols=137 Identities=20% Similarity=0.340 Sum_probs=105.2
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh---hhCC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE---KFGP 127 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 127 (226)
+=+++|.-|||||..++++++..+.. |.++...+||.-||+|.++.+.++.+.+++++....|...... ....
T Consensus 285 ~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~ 360 (677)
T COG1200 285 NRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQ 360 (677)
T ss_pred HHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHH
Confidence 34899999999999999999999875 7789999999999999999999999999999988876643332 2234
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC-CceEEEEeee-Cch
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP-NLKRGMFSAT-HTE 205 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~-~~q~v~~SAT-~~~ 205 (226)
...+..+|+|+|+.-+. ....+.++.++|+||=|++.-. + -..+..+ .. .+-+++|||| .|+
T Consensus 361 l~~G~~~ivVGTHALiQ-------d~V~F~~LgLVIiDEQHRFGV~------Q-R~~L~~K--G~~~Ph~LvMTATPIPR 424 (677)
T COG1200 361 LASGEIDIVVGTHALIQ-------DKVEFHNLGLVIIDEQHRFGVH------Q-RLALREK--GEQNPHVLVMTATPIPR 424 (677)
T ss_pred HhCCCCCEEEEcchhhh-------cceeecceeEEEEeccccccHH------H-HHHHHHh--CCCCCcEEEEeCCCchH
Confidence 44667999999987443 4566889999999999987322 2 2222222 23 5788899999 454
Q ss_pred hH
Q psy12977 206 DV 207 (226)
Q Consensus 206 ~~ 207 (226)
.+
T Consensus 425 TL 426 (677)
T COG1200 425 TL 426 (677)
T ss_pred HH
Confidence 43
No 103
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.44 E-value=1.2e-12 Score=117.26 Aligned_cols=57 Identities=30% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
.+++.+++.||||+|||++|++|++..+... .+.+++|++||++|.+|+.+.+..+.
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4678899999999999999999998876522 24699999999999999999888887
No 104
>KOG0949|consensus
Probab=99.42 E-value=1.1e-12 Score=118.85 Aligned_cols=193 Identities=19% Similarity=0.147 Sum_probs=124.3
Q ss_pred echhhhhhhHHHHHHHHHHHh----hccccCCCC--cc-cccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCC
Q psy12977 9 LGIFTIGFVISIIVTTLAVVS----NSIFKHFEP--HF-TITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLG 81 (226)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~--~Q-~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~ 81 (226)
+|++++-|++-..-+-+...- +--++.+-| -| +.....-.+..+++.|||.+|||+.--+.+=..++.. ..
T Consensus 479 ~g~~~~~fQLqy~Ge~l~rsv~~~kD~RV~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~ 556 (1330)
T KOG0949|consen 479 MGIAGLVFQLQYHGEYLLRSVSSKKDPRVHDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES--DS 556 (1330)
T ss_pred CCccceehhhhhccchhhhccccCCCcchhccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc--CC
Confidence 567777777666555553322 222221211 23 3334555578899999999999987545544444432 34
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhcCCCe--EEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhc-CCCCCCCCC
Q psy12977 82 FRAVIVCPTRELAKQTYNETVRLSEGLGLR--AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQM-DPPALNLAN 158 (226)
Q Consensus 82 ~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~-~~~~~~~~~ 158 (226)
.-+|+++|+++|+.|+...+...+...... +..++.-+ +..+...-+|+|+|+.|+.+.+++.. ....-+.++
T Consensus 557 ~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~lt----qEYsinp~nCQVLITvPecleslLlspp~~q~~cer 632 (1330)
T KOG0949|consen 557 DVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLT----QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCER 632 (1330)
T ss_pred CEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhh----HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhc
Confidence 489999999999999988877776433222 22222221 11112234799999999999998876 224566889
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC--chhHHHHHHH
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH--TEDVAKWCRR 213 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~--~~~~~~~~~~ 213 (226)
++++|+||+|.+.... -..-+.+++.. -.|.++++|||. |.....|+++
T Consensus 633 IRyiIfDEVH~iG~~e---d~l~~Eqll~l---i~CP~L~LSATigN~~l~qkWlnq 683 (1330)
T KOG0949|consen 633 IRYIIFDEVHLIGNEE---DGLLWEQLLLL---IPCPFLVLSATIGNPNLFQKWLNQ 683 (1330)
T ss_pred ceEEEechhhhccccc---cchHHHHHHHh---cCCCeeEEecccCCHHHHHHHHHH
Confidence 9999999999987653 22333334333 388999999994 4566778774
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.41 E-value=5.9e-12 Score=115.44 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=108.5
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH-HHHhhcCCCeEEEEecchhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET-VRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
.+.++..+++.||||+|||...-..+++... ..+.++.+.-|.|-=|..+++.+ +++....|..+++. .
T Consensus 61 ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~-------i 130 (845)
T COG1643 61 AIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS-------I 130 (845)
T ss_pred HHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE-------E
Confidence 3445677899999999999876555665544 22347778888885555555533 33333344344332 2
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc-cccCccchHH-HHHHHHHhcCCCCceEEEEee
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL-FEAGVRGFRD-QLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l-~~~~~~~~~~-~i~~i~~~~~~~~~q~v~~SA 201 (226)
++......+..|-+.|.+.|.+.+..++. ++.++++|+||+|.= ++. .+.- .++.++... ++..+++.|||
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~---Ls~ys~vIiDEaHERSl~t---DilLgllk~~~~~r-r~DLKiIimSA 203 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPL---LSGYSVVIIDEAHERSLNT---DILLGLLKDLLARR-RDDLKLIIMSA 203 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcc---cccCCEEEEcchhhhhHHH---HHHHHHHHHHHhhc-CCCceEEEEec
Confidence 33333456678999999999999997544 999999999999943 333 2333 333334444 45689999999
Q ss_pred eCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 202 THTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 202 T~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
|+..+ .+.+|+.+.-.+++++|
T Consensus 204 Tld~~---rfs~~f~~apvi~i~GR 225 (845)
T COG1643 204 TLDAE---RFSAYFGNAPVIEIEGR 225 (845)
T ss_pred ccCHH---HHHHHcCCCCEEEecCC
Confidence 98743 36688887777887776
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.41 E-value=2.3e-12 Score=120.60 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=93.8
Q ss_pred HHHHhhccccCCCCccccc-----ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHFTIT-----YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q~~~-----~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
...+.+.+|+ +.|.|... ..+..++++++.||||+|||++|++|++.... .+.+++|.+||++|.+|+..
T Consensus 236 ~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 236 SKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred HHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHHH
Confidence 3445556666 56777432 25567899999999999999999999887665 24489999999999999855
Q ss_pred -HHHHHhhcCC--CeEEEEecch-------------------------------------hhhhhh--------------
Q psy12977 100 -ETVRLSEGLG--LRAHVIGKIQ-------------------------------------QAAEKF-------------- 125 (226)
Q Consensus 100 -~~~~~~~~~~--~~~~~~~~~~-------------------------------------~~~~~~-------------- 125 (226)
.+..+.+.++ .++..+.|.. .+....
T Consensus 311 ~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~ 390 (850)
T TIGR01407 311 KDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVR 390 (850)
T ss_pred HHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhh
Confidence 4555544433 3222222111 000000
Q ss_pred -------------------CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 126 -------------------GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 126 -------------------~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.+.....+||+|+....+...+.... ..+...+++|+||||++.+.
T Consensus 391 ~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~--~ilp~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 391 HDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP--ELFPSFRDLIIDEAHHLPDI 455 (850)
T ss_pred cCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc--ccCCCCCEEEEECcchHHHH
Confidence 00114568999999999988775422 22455689999999999764
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.38 E-value=2.9e-12 Score=117.95 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=111.2
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE-EEecchhhhhhhCC--
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH-VIGKIQQAAEKFGP-- 127 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 127 (226)
.+++.||||.|||.+.+.++............|++++.|++.+.+++++.++......+.... ..............
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 295 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQD 295 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccc
Confidence 789999999999999998888777652225679999999999999999999988766554443 22221111111110
Q ss_pred ----------CcCCCCCEEEECchHHHHhHhcCCCCCC-C--CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCc
Q psy12977 128 ----------RSAQKFDVLITTPNKLVYLLQMDPPALN-L--ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNL 194 (226)
Q Consensus 128 ----------~~~~~~~IiV~Tp~~l~~~~~~~~~~~~-~--~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~ 194 (226)
....-..+.++||.+........ .... + -..+.+|+||+|.+-+. .....+..++..+..-+.
T Consensus 296 ~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~S~vIlDE~h~~~~~---~~~~~l~~~i~~l~~~g~ 371 (733)
T COG1203 296 ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKG-FKFEFLALLLTSLVILDEVHLYADE---TMLAALLALLEALAEAGV 371 (733)
T ss_pred cceeEEecccccceeccccccCHhHhhhhhccc-cchHHHHHHHhhchhhccHHhhccc---chHHHHHHHHHHHHhCCC
Confidence 00122355666666655532211 1111 1 23469999999977665 245555555555545689
Q ss_pred eEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 195 KRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 195 q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
.++++|||+|+..++.+..+..+...+.
T Consensus 372 ~ill~SATlP~~~~~~l~~~~~~~~~~~ 399 (733)
T COG1203 372 PVLLMSATLPPFLKEKLKKALGKGREVV 399 (733)
T ss_pred CEEEEecCCCHHHHHHHHHHHhccccee
Confidence 9999999999999999988776555443
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=4.8e-12 Score=114.44 Aligned_cols=155 Identities=22% Similarity=0.184 Sum_probs=112.1
Q ss_pred CCCCcccccc-cC-CC---CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 35 HFEPHFTITY-LS-PL---GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 35 ~~~~~Q~~~~-~~-~~---~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
.+++.|+.+. .+ .+ -+..++.+.||||||..|+-.+...+.+ |.++|+++|-.+|..|+.+.++..+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----GkqvLvLVPEI~Ltpq~~~rf~~rFg--- 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----GKQVLVLVPEIALTPQLLARFKARFG--- 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----CCEEEEEeccccchHHHHHHHHHHhC---
Confidence 4555665553 22 11 2678999999999999998887777764 67899999999999999999988875
Q ss_pred CeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc---cCccchHHHHH
Q psy12977 110 LRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE---AGVRGFRDQLA 183 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~---~~~~~~~~~i~ 183 (226)
.++...+++-++.++. .....+...|+|+|-..+ ..+++++.++|+||-|.-.- ++.+....++.
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh---------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 4544444443333332 233457789999996543 55688999999999996642 22345677777
Q ss_pred HHHHhcCCCCceEEEEeeeCchhH
Q psy12977 184 VIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 184 ~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
...... .++++++-|||++=+.
T Consensus 342 ~~Ra~~--~~~pvvLgSATPSLES 363 (730)
T COG1198 342 VLRAKK--ENAPVVLGSATPSLES 363 (730)
T ss_pred HHHHHH--hCCCEEEecCCCCHHH
Confidence 666665 7999999999966433
No 109
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.36 E-value=4.9e-12 Score=117.43 Aligned_cols=121 Identities=25% Similarity=0.307 Sum_probs=86.5
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH-HHHHHHHhhcCCCeEEEEecchh---
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT-YNETVRLSEGLGLRAHVIGKIQQ--- 120 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~--- 120 (226)
.+..++.+++.|+||+|||++|++|++.... +.++||++||++|++|+ .+.+..+.+..+.++..+.|+..
T Consensus 260 ~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~-----~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~ylc 334 (820)
T PRK07246 260 DFHDGPASFIEAQTGIGKTYGYLLPLLAQSD-----QRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNYLK 334 (820)
T ss_pred HHhCCCcEEEECCCCCcHHHHHHHHHHHhcC-----CCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 4556788999999999999999999887542 45899999999999999 46777777766655543332110
Q ss_pred ----------------------------------hhhhhC---------------------------------CCcCCCC
Q psy12977 121 ----------------------------------AAEKFG---------------------------------PRSAQKF 133 (226)
Q Consensus 121 ----------------------------------~~~~~~---------------------------------~~~~~~~ 133 (226)
+..... +.....+
T Consensus 335 l~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~A 414 (820)
T PRK07246 335 LDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTA 414 (820)
T ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhC
Confidence 000000 0003558
Q ss_pred CEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 134 DVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 134 ~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
||+|+.+..|...+...+ .+...+++|+||||++.+.
T Consensus 415 divItNHall~~~~~~~~---~~p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 415 RLLITNHAYFLTRVQDDK---DFARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred CEEEEchHHHHHHHhhcc---CCCCCCEEEEECcchhHHH
Confidence 999999998888765432 2578999999999998753
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.7e-11 Score=111.88 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=100.2
Q ss_pred HHHHhhccccCCCCcc-cccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHF-TITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q-~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
-+.+++....++...| .++--+..|++.-+.||||.|||...++..+-... .+.++.+++||..|+.|+.+.++.
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHH
Confidence 3444444444777788 44457789999999999999999754443333222 256999999999999999999999
Q ss_pred HhhcCC-CeEEEEec----chhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 104 LSEGLG-LRAHVIGK----IQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 104 ~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
+.+..+ ..+.+.+- .....+...+...++.||+|+|.+.+...+... .-.+++++++|++|.++..+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cccCCCEEEEccHHHHHhcc
Confidence 988776 44333211 122233334455678999999998887766542 12478999999999887653
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.29 E-value=2.7e-11 Score=112.65 Aligned_cols=152 Identities=21% Similarity=0.306 Sum_probs=114.4
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhh---hhhCC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAA---EKFGP 127 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 127 (226)
|=++||.-|-|||..++=+++..+.+ |+++.+++||.-||+|.++.+++.+..+++++.....-.... .....
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~~----GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~ 692 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVMD----GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKG 692 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHH
Confidence 45899999999999998888888875 679999999999999999999999999999988776544333 33334
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
...+..||+|+|+.-| . ..+.++++.++||||-|++.=. .-+.++.+. .+.-++-+|||+=+..
T Consensus 693 la~G~vDIvIGTHrLL----~---kdv~FkdLGLlIIDEEqRFGVk----~KEkLK~Lr-----~~VDvLTLSATPIPRT 756 (1139)
T COG1197 693 LAEGKVDIVIGTHRLL----S---KDVKFKDLGLLIIDEEQRFGVK----HKEKLKELR-----ANVDVLTLSATPIPRT 756 (1139)
T ss_pred HhcCCccEEEechHhh----C---CCcEEecCCeEEEechhhcCcc----HHHHHHHHh-----ccCcEEEeeCCCCcch
Confidence 5578899999998533 2 4666899999999999987433 445555554 5668999999954444
Q ss_pred HHHHHHhcCCCeEEe
Q psy12977 208 AKWCRRKLKRRVQIN 222 (226)
Q Consensus 208 ~~~~~~~~~~p~~i~ 222 (226)
.++.-.-++|--.|+
T Consensus 757 L~Msm~GiRdlSvI~ 771 (1139)
T COG1197 757 LNMSLSGIRDLSVIA 771 (1139)
T ss_pred HHHHHhcchhhhhcc
Confidence 444434444444433
No 112
>KOG0950|consensus
Probab=99.28 E-value=1.7e-11 Score=111.16 Aligned_cols=174 Identities=15% Similarity=0.088 Sum_probs=126.5
Q ss_pred hccccCCCCccccc---ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 30 NSIFKHFEPHFTIT---YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~---~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
..+...+..-|..+ +....++|.+..+||+.|||++.-+-++..+.. .+..++.+.|..+.+..-...+..+..
T Consensus 218 ~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~---~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 218 DKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC---RRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred hhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH---HhhceeEecceeehhHHHHhhhhhhcc
Confidence 44444455555333 344578999999999999999988888777643 244689999999999999999999999
Q ss_pred cCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
..|..+....|...... ..+.-++.|||-++-..++++.-..-.++.+.++|+||.|.+.+.+ -...+..++
T Consensus 295 ~~G~~ve~y~g~~~p~~-----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~---rg~~lE~~l 366 (1008)
T KOG0950|consen 295 DLGFPVEEYAGRFPPEK-----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG---RGAILELLL 366 (1008)
T ss_pred ccCCcchhhcccCCCCC-----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc---cchHHHHHH
Confidence 99998877765433322 3355689999999998888765455568889999999999888764 223333333
Q ss_pred Hhc----CCCCceEEEEeeeCc--hhHHHHHHHh
Q psy12977 187 AAC----SGPNLKRGMFSATHT--EDVAKWCRRK 214 (226)
Q Consensus 187 ~~~----~~~~~q~v~~SAT~~--~~~~~~~~~~ 214 (226)
.++ .....|+|+||||+| +.+..|++..
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~ 400 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIPNNSLLQDWLDAF 400 (1008)
T ss_pred HHHHHhccccceeEeeeecccCChHHHHHHhhhh
Confidence 322 234468999999988 4577777763
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.28 E-value=8.9e-12 Score=111.84 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=103.3
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+.+++++.||+|||..+ +.++.++.+ .+.-.|+++++.+++|++|.+..+..+.++. ..+..+.+.. .
T Consensus 186 ~raLlvMATGTGKTrTA-iaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-~~~n~i~~~~---------~ 253 (875)
T COG4096 186 NRALLVMATGTGKTRTA-IAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLPFG-TKMNKIEDKK---------G 253 (875)
T ss_pred ceEEEEEecCCCcceeH-HHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCCCc-cceeeeeccc---------C
Confidence 45999999999999865 555666652 4455699999999999999999988887653 2222222211 1
Q ss_pred CCCCCEEEECchHHHHhHhcC---CCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 130 AQKFDVLITTPNKLVYLLQMD---PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~---~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
...++|.++|-..+..-.... ...+...-++++|+||||+- .......++.++ .. -.++++||+.++
T Consensus 254 ~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-------i~~~~~~I~dYF--dA-~~~gLTATP~~~ 323 (875)
T COG4096 254 DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-------IYSEWSSILDYF--DA-ATQGLTATPKET 323 (875)
T ss_pred CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh-------HHhhhHHHHHHH--HH-HHHhhccCcccc
Confidence 125789999999998876542 23455566899999999974 444555666666 22 233349999887
Q ss_pred HHHHHHHhc-CCCeE
Q psy12977 207 VAKWCRRKL-KRRVQ 220 (226)
Q Consensus 207 ~~~~~~~~~-~~p~~ 220 (226)
+..---.|+ .+|+.
T Consensus 324 ~d~~T~~~F~g~Pt~ 338 (875)
T COG4096 324 IDRSTYGFFNGEPTY 338 (875)
T ss_pred cccccccccCCCcce
Confidence 766666666 66664
No 114
>KOG0920|consensus
Probab=99.23 E-value=2.9e-10 Score=104.48 Aligned_cols=165 Identities=21% Similarity=0.153 Sum_probs=113.0
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH-HHHhhcCCCeEEEEecchhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET-VRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
.+.++..+++.|.||+|||.-..-.+++...... ...++++-.|.|-=|-.+++.. .+.+...+..++......
T Consensus 184 ~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~---- 258 (924)
T KOG0920|consen 184 AIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLE---- 258 (924)
T ss_pred HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeee----
Confidence 4455678899999999999876655666553333 5567888889876666665533 333444454444333221
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
........++.||.+.+++.+.. .-.+..+.++|+||+|.=.-.. ++...+.+.+-.. ++..++++||||+
T Consensus 259 ---~~~s~~t~L~fcTtGvLLr~L~~---~~~l~~vthiivDEVHER~i~~--DflLi~lk~lL~~-~p~LkvILMSAT~ 329 (924)
T KOG0920|consen 259 ---SKRSRETRLLFCTTGVLLRRLQS---DPTLSGVTHIIVDEVHERSINT--DFLLILLKDLLPR-NPDLKVILMSATL 329 (924)
T ss_pred ---cccCCceeEEEecHHHHHHHhcc---CcccccCceeeeeeEEEccCCc--ccHHHHHHHHhhh-CCCceEEEeeeec
Confidence 22233467999999999999885 4458899999999999543221 3444444443333 5899999999998
Q ss_pred chhHHHHHHHhcCCCeEEecCCC
Q psy12977 204 TEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 204 ~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
. .+....|+...-.+++.+|
T Consensus 330 d---ae~fs~YF~~~pvi~i~gr 349 (924)
T KOG0920|consen 330 D---AELFSDYFGGCPVITIPGR 349 (924)
T ss_pred c---hHHHHHHhCCCceEeecCC
Confidence 8 5567788988888888776
No 115
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.23 E-value=3e-11 Score=99.67 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=48.0
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC--CCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN--LGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~--~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.+..|+++++.+|||+|||++++.|++..+..... .+.+++|.++|.++.+|....+++.
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45678899999999999999999999866543222 2348999999999999987777665
No 116
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.23 E-value=3e-11 Score=99.67 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=48.0
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC--CCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN--LGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~--~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.+..|+++++.+|||+|||++++.|++..+..... .+.+++|.++|.++.+|....+++.
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45678899999999999999999999866543222 2348999999999999987777665
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=6e-11 Score=108.68 Aligned_cols=145 Identities=21% Similarity=0.171 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
..+.|.-.+.+++.... .+..+|-... .+..|+ +....||+|||+++.+|++-.... |..+.+++|+..
T Consensus 61 d~~l~eafA~vrEa~~R~lGm~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~----G~~VhvvT~ndy 134 (913)
T PRK13103 61 DQLLPEAFAVAREAGKRVMGMRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS----GKGVHVVTVNDY 134 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc----CCCEEEEeCCHH
Confidence 34455555556555444 4445665444 333444 789999999999999888765543 668899999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhc----CCCCCCCCCccEEEEccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQM----DPPALNLANVEWLIVDES 167 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~----~~~~~~~~~~~~lViDE~ 167 (226)
||.|-++++..+.+.+|+++.++.+.....++. ....+||+++|..-+ +++++. .........+.+.||||+
T Consensus 135 LA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err---~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEv 211 (913)
T PRK13103 135 LARRDANWMRPLYEFLGLSVGIVTPFQPPEEKR---AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEV 211 (913)
T ss_pred HHHHHHHHHHHHhcccCCEEEEECCCCCHHHHH---HHhcCCEEEEcccccccchhhccceechhhhcccccceeEechh
Confidence 999999999999999999999887765444332 345699999999887 223321 112223478899999999
Q ss_pred cccc
Q psy12977 168 DKLF 171 (226)
Q Consensus 168 h~l~ 171 (226)
|.++
T Consensus 212 DsiL 215 (913)
T PRK13103 212 DSIL 215 (913)
T ss_pred hhee
Confidence 9775
No 118
>KOG0922|consensus
Probab=99.21 E-value=2.8e-10 Score=100.08 Aligned_cols=162 Identities=18% Similarity=0.140 Sum_probs=106.7
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH-HHHHHhhcCCCeEEEEecchhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN-ETVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
...+++-+++.|+||||||.-.--.+.+.-.. ...++.+..|.|--|..+++ +..++...+|..+++..
T Consensus 62 ~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I------- 131 (674)
T KOG0922|consen 62 AVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI------- 131 (674)
T ss_pred HHHHCCEEEEEcCCCCCccccHhHHHHhcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE-------
Confidence 33456779999999999997543334343322 22347778888866655544 34455555565555433
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc-cccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL-FEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l-~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
++...-.....|...|-+.|++-+..++ .+++.+++|+||||.= +..+ -..-.++.+++.. +..+++++|||
T Consensus 132 RFed~ts~~TrikymTDG~LLRE~l~Dp---~LskYsvIIlDEAHERsl~TD--iLlGlLKki~~~R--~~LklIimSAT 204 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGMLLREILKDP---LLSKYSVIILDEAHERSLHTD--ILLGLLKKILKKR--PDLKLIIMSAT 204 (674)
T ss_pred EecccCCCceeEEEecchHHHHHHhcCC---ccccccEEEEechhhhhhHHH--HHHHHHHHHHhcC--CCceEEEEeee
Confidence 2223334567799999999999888643 4899999999999943 2211 1333344444433 56799999999
Q ss_pred CchhHHHHHHHhcCCCeEEecCCC
Q psy12977 203 HTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 203 ~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
+. .+....|+.+.-.+.|.+|
T Consensus 205 ld---a~kfS~yF~~a~i~~i~GR 225 (674)
T KOG0922|consen 205 LD---AEKFSEYFNNAPILTIPGR 225 (674)
T ss_pred ec---HHHHHHHhcCCceEeecCC
Confidence 98 4447788888777787776
No 119
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.15 E-value=1.9e-10 Score=108.55 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=43.4
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
.+.+++.+++.||||+|||++|++|++..... .+.+++|.++|+.|-+|+.+
T Consensus 272 ~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 272 ALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred HHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHH
Confidence 44567889999999999999999998765542 24689999999999999865
No 120
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.14 E-value=1.7e-09 Score=89.34 Aligned_cols=145 Identities=21% Similarity=0.148 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC-CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN-LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~-~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
...+..++....|+|||...+..+......... ....++|++|. .+..|+.+++..+......++....+... ....
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~-~~~~ 100 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSE-RRRL 100 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCH-HHHT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccc-cccc
Confidence 345788999999999998765544332222111 11259999999 88899999999998654556666655541 1222
Q ss_pred CCCcCCCCCEEEECchHHH-----HhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 126 GPRSAQKFDVLITTPNKLV-----YLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~-----~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
........+++|+|.+.+. .... .+.-.+.+++|+||+|.+-+. .......+..+ ....++++|
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~----~l~~~~~~~vIvDEaH~~k~~-----~s~~~~~l~~l--~~~~~~lLS 169 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKE----DLKQIKWDRVIVDEAHRLKNK-----DSKRYKALRKL--RARYRWLLS 169 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTH----HHHTSEEEEEEETTGGGGTTT-----TSHHHHHHHCC--CECEEEEE-
T ss_pred cccccccceeeecccccccccccccccc----ccccccceeEEEecccccccc-----ccccccccccc--ccceEEeec
Confidence 3344567899999999988 2111 111234889999999998433 22333344445 366788899
Q ss_pred eeCc
Q psy12977 201 ATHT 204 (226)
Q Consensus 201 AT~~ 204 (226)
||+-
T Consensus 170 gTP~ 173 (299)
T PF00176_consen 170 GTPI 173 (299)
T ss_dssp SS-S
T ss_pred cccc
Confidence 9943
No 121
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.13 E-value=5.5e-10 Score=104.49 Aligned_cols=162 Identities=18% Similarity=0.092 Sum_probs=96.0
Q ss_pred CCCCcccccc-cCC--CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe
Q psy12977 35 HFEPHFTITY-LSP--LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~--~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~ 111 (226)
.+.|.|.... ... ....+++....|.|||.-....+...+... ...+++|+||. .|..||..++.+.+ +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g--~~~rvLIVvP~-sL~~QW~~El~~kF---~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG--RAERVLILVPE-TLQHQWLVEMLRRF---NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC--CCCcEEEEcCH-HHHHHHHHHHHHHh---CCC
Confidence 3667775443 222 235689999999999988766555544432 23489999998 79999999886654 444
Q ss_pred EEEEecchhhhhhhC-CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 112 AHVIGKIQQAAEKFG-PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
...+.+......... .......+++|++.+.+...-... ..+.-..++++|+||||++-....... ...+.++.+.
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~-~~l~~~~wdlvIvDEAH~lk~~~~~~s--~~y~~v~~La 302 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRL-EQALAAEWDLLVVDEAHHLVWSEEAPS--REYQVVEQLA 302 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHH-HHHhhcCCCEEEEechhhhccCCCCcC--HHHHHHHHHh
Confidence 444443321111100 011234689999988776522110 122234789999999999863210011 1122333332
Q ss_pred CCCceEEEEeeeCch
Q psy12977 191 GPNLKRGMFSATHTE 205 (226)
Q Consensus 191 ~~~~q~v~~SAT~~~ 205 (226)
.....++++|||+..
T Consensus 303 ~~~~~~LLLTATP~q 317 (956)
T PRK04914 303 EVIPGVLLLTATPEQ 317 (956)
T ss_pred hccCCEEEEEcCccc
Confidence 344578999999763
No 122
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=2e-10 Score=104.78 Aligned_cols=146 Identities=22% Similarity=0.204 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
...+.|...+.+++.... .+.++|-... .+..|+ +....||+|||+...+|++..... |..+-+++||.
T Consensus 58 ld~~l~eafA~vrEa~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----G~~v~vvT~ne 131 (796)
T PRK12906 58 LDDLLPEAFAVAREGAKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----GKGVHVVTVNE 131 (796)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----CCCeEEEeccH
Confidence 345566777777766555 4556675554 444455 899999999999999888877654 66889999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC-----CCCCCCCccEEEEcc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP-----PALNLANVEWLIVDE 166 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~-----~~~~~~~~~~lViDE 166 (226)
.||.|-++.+..+.+.+|+++.+..++.....+ .....+||+.+|...+--.+-+++ .........+.|+||
T Consensus 132 yLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r---~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDE 208 (796)
T PRK12906 132 YLSSRDATEMGELYRWLGLTVGLNLNSMSPDEK---RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDE 208 (796)
T ss_pred HHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHH---HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeecc
Confidence 999999999999999999999988776544433 345688999999888754332221 122245678999999
Q ss_pred ccccc
Q psy12977 167 SDKLF 171 (226)
Q Consensus 167 ~h~l~ 171 (226)
+|.++
T Consensus 209 vDSiL 213 (796)
T PRK12906 209 VDSIL 213 (796)
T ss_pred chhee
Confidence 99775
No 123
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=7.7e-10 Score=101.15 Aligned_cols=146 Identities=19% Similarity=0.186 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
...+.+.-.+.+++.... .+..+|-... .+..|+ +..+.||.|||+++.+|++-.... |..+-|++++.
T Consensus 63 ld~~l~eafA~vREa~~R~lG~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~----GkgVhVVTvNd 136 (939)
T PRK12902 63 LDELLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT----GKGVHVVTVND 136 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc----CCCeEEEeCCH
Confidence 445566777777766555 4455665544 334444 789999999999999887754432 66789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-----HHhHhcCCCCCCCCCccEEEEcc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-----VYLLQMDPPALNLANVEWLIVDE 166 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-----~~~~~~~~~~~~~~~~~~lViDE 166 (226)
.||.+-++++..+.+.+|..+.++.++.....+ .....|||+.+|+..+ .+.+...........+.+.||||
T Consensus 137 YLA~RDae~m~~vy~~LGLtvg~i~~~~~~~er---r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDE 213 (939)
T PRK12902 137 YLARRDAEWMGQVHRFLGLSVGLIQQDMSPEER---KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDE 213 (939)
T ss_pred HHHHhHHHHHHHHHHHhCCeEEEECCCCChHHH---HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEec
Confidence 999999999999999999999988765544333 3568899999999888 33333222334467789999999
Q ss_pred ccccc
Q psy12977 167 SDKLF 171 (226)
Q Consensus 167 ~h~l~ 171 (226)
+|.++
T Consensus 214 vDSIL 218 (939)
T PRK12902 214 VDSIL 218 (939)
T ss_pred cccee
Confidence 99775
No 124
>KOG0951|consensus
Probab=99.11 E-value=4.8e-10 Score=104.21 Aligned_cols=156 Identities=25% Similarity=0.319 Sum_probs=112.3
Q ss_pred ccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc-
Q psy12977 31 SIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG- 107 (226)
Q Consensus 31 ~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~- 107 (226)
..|..++|+|++.+ ....+.++++.+|+|||||++.-+.++. .....+++++.|..+.+..++..+...++.
T Consensus 1139 ~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1139 TLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred hhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 34556699999887 5566788999999999999998777655 334559999999999999988877666544
Q ss_pred CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc---chHHHHHH
Q psy12977 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR---GFRDQLAV 184 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~---~~~~~i~~ 184 (226)
.|..+...+|..... -.+....+|+|+||+++..+ + ....+++.|.||.|.+.+..+. -.+. +..
T Consensus 1214 ~G~~~~~l~ge~s~~----lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ 1281 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLD----LKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRY 1281 (1674)
T ss_pred cCceEEecCCccccc----hHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHH
Confidence 455555555553322 23456789999999998766 2 3678999999999988754321 1223 455
Q ss_pred HHHhcCCCCceEEEEeeeCc
Q psy12977 185 IYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 185 i~~~~~~~~~q~v~~SAT~~ 204 (226)
+-.++ -++.+++.+|..+.
T Consensus 1282 ia~q~-~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1282 IASQL-EKKIRVVALSSSLA 1300 (1674)
T ss_pred HHHHH-HhheeEEEeehhhc
Confidence 55555 45678888877654
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=9.9e-10 Score=98.71 Aligned_cols=146 Identities=23% Similarity=0.164 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
...+.++..+.+++..+. .+..+|-... .++.|+ +....||.|||+...+|++..... |..+.+++|+.
T Consensus 56 ~d~~l~eafAvvREa~~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~Nd 129 (764)
T PRK12326 56 DSDDLAEFLAIAREAAERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVND 129 (764)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCH
Confidence 445567777777766665 4445664443 444554 679999999999998888766553 66899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEcc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDE 166 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE 166 (226)
.||.|-++++..+.+.+|+++..+.+.....++ .....|||+.+|...+--.+.++ ........+.+.|+||
T Consensus 130 yLA~RDae~m~~ly~~LGLsvg~i~~~~~~~er---r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDE 206 (764)
T PRK12326 130 YLARRDAEWMGPLYEALGLTVGWITEESTPEER---RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDE 206 (764)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHH---HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecc
Confidence 999999999999999999999988776544333 34467999999988764322221 1222345688999999
Q ss_pred ccccc
Q psy12977 167 SDKLF 171 (226)
Q Consensus 167 ~h~l~ 171 (226)
+|.++
T Consensus 207 vDSiL 211 (764)
T PRK12326 207 ADSVL 211 (764)
T ss_pred hhhhe
Confidence 99775
No 126
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.05 E-value=1.9e-09 Score=98.94 Aligned_cols=48 Identities=33% Similarity=0.346 Sum_probs=40.1
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
++.+++.||||+|||++|++|++..... .+.++||-+.|+.|=+|..+
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHh
Confidence 4678999999999999999998765442 24589999999999999854
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.05 E-value=9.1e-10 Score=100.62 Aligned_cols=146 Identities=22% Similarity=0.178 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
..+.++..+.+++..+. .+..+|-.....+. +.-+..+.||.|||+++.+|++-... .|..+.|++++..|
T Consensus 55 d~il~eafAvvrEa~~R~lG~r~ydvQlig~l~L~-~G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyL 129 (870)
T CHL00122 55 NKIIPESFALTREASFRTLGLRHFDVQLIGGLVLN-DGKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYL 129 (870)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHhhhhHhhc-CCccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHH
Confidence 44566666666665554 34556655543332 44589999999999999988864333 25679999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEcccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDESD 168 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE~h 168 (226)
|.+-++++..+.+.+|..+.++.++.....+ .....+||+.+|...+--.+-++ ........+.+.|+||+|
T Consensus 130 A~RD~e~m~pvy~~LGLsvg~i~~~~~~~er---r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 130 AKRDQEWMGQIYRFLGLTVGLIQEGMSSEER---KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred HHHHHHHHHHHHHHcCCceeeeCCCCChHHH---HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 9999999999999999999988766544443 34578999999987664322221 122235668899999999
Q ss_pred ccc
Q psy12977 169 KLF 171 (226)
Q Consensus 169 ~l~ 171 (226)
.++
T Consensus 207 SiL 209 (870)
T CHL00122 207 SIL 209 (870)
T ss_pred hhe
Confidence 775
No 128
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.04 E-value=7.9e-10 Score=89.52 Aligned_cols=144 Identities=23% Similarity=0.215 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 19 SIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
.+.++.+..+++.... .+.++|-... .+..|+ +++..||-|||+...++++-.... |..+-|++.+..|
T Consensus 57 ~~l~e~~Al~rea~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----G~~V~vvT~NdyL 130 (266)
T PF07517_consen 57 DILPEAFALVREAARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----GKGVHVVTSNDYL 130 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----SS-EEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----cCCcEEEeccHHH
Confidence 3455555555544433 5556675554 333344 899999999999988776655443 5689999999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEcccc
Q psy12977 94 AKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDESD 168 (226)
Q Consensus 94 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE~h 168 (226)
|.+=++++..+.+.+|+.+.....+.....+. ....++|+.+|...+...+-++ .........+++|+||+|
T Consensus 131 A~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~---~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 131 AKRDAEEMRPFYEFLGLSVGIITSDMSSEERR---EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEETTTEHHHHH---HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred hhccHHHHHHHHHHhhhccccCccccCHHHHH---HHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 99999999999999999999988776543321 2356789999999887533221 111225678999999999
Q ss_pred ccc
Q psy12977 169 KLF 171 (226)
Q Consensus 169 ~l~ 171 (226)
.++
T Consensus 208 s~L 210 (266)
T PF07517_consen 208 SIL 210 (266)
T ss_dssp HHT
T ss_pred eEE
Confidence 775
No 129
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.97 E-value=7.4e-09 Score=96.12 Aligned_cols=147 Identities=21% Similarity=0.197 Sum_probs=87.7
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH-----HHhhc-C-CCeEE--EEecch
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV-----RLSEG-L-GLRAH--VIGKIQ 119 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~-----~~~~~-~-~~~~~--~~~~~~ 119 (226)
..++.+.++||+|||.+|+-.++....... ..++||+||+.++-+.+.+.++ +.+.. + +..+. ...+..
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~--~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKYG--LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 358999999999999999888877765432 3589999999999998876654 22221 1 22233 222221
Q ss_pred ----------hhhhhhCC---CcCCCCCEEEECchHHHHhHh--cC------CCC-CCCCCc----cEEEEccccccccc
Q psy12977 120 ----------QAAEKFGP---RSAQKFDVLITTPNKLVYLLQ--MD------PPA-LNLANV----EWLIVDESDKLFEA 173 (226)
Q Consensus 120 ----------~~~~~~~~---~~~~~~~IiV~Tp~~l~~~~~--~~------~~~-~~~~~~----~~lViDE~h~l~~~ 173 (226)
.....+.. .-.+..+|+|.|.+.+..-.. .. .+. .+...+ -.+|+||+|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 01111111 112357899999998876321 10 011 222222 28999999998543
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
+ ..+ ..+ ..+ +|.+ ++.+|||+++
T Consensus 217 ~--k~~---~~i-~~l-npl~-~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFY---QAI-EAL-KPQM-IIRFGATFPD 240 (986)
T ss_pred h--HHH---HHH-Hhc-Cccc-EEEEeeecCC
Confidence 1 233 333 344 2333 4669999986
No 130
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.95 E-value=7.9e-09 Score=97.32 Aligned_cols=143 Identities=19% Similarity=0.145 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh-
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF- 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 125 (226)
..|.+.++....|.|||+..+.. +..+.........+|||||. ++..||.+.+..++.. ..+..+.|........
T Consensus 186 ~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~--l~v~~~~G~~~eR~~~~ 261 (1033)
T PLN03142 186 ENGINGILADEMGLGKTLQTISL-LGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV--LRAVKFHGNPEERAHQR 261 (1033)
T ss_pred hcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--CceEEEeCCHHHHHHHH
Confidence 35678899999999999865433 33332222223468999996 5778999999998753 4444555543322211
Q ss_pred -CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 126 -GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 126 -~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
........+|+|+|.+.+...... +.--.++++|+||+|.+-.. ...+.+.++.+ .....+++|+|+-
T Consensus 262 ~~~~~~~~~dVvITSYe~l~~e~~~----L~k~~W~~VIvDEAHrIKN~-----~Sklskalr~L--~a~~RLLLTGTPl 330 (1033)
T PLN03142 262 EELLVAGKFDVCVTSFEMAIKEKTA----LKRFSWRYIIIDEAHRIKNE-----NSLLSKTMRLF--STNYRLLITGTPL 330 (1033)
T ss_pred HHHhcccCCCcceecHHHHHHHHHH----hccCCCCEEEEcCccccCCH-----HHHHHHHHHHh--hcCcEEEEecCCC
Confidence 112235689999999988764332 22335789999999998543 23344555555 2445678899954
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.92 E-value=6.1e-09 Score=94.59 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=99.6
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCc
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRS 129 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 129 (226)
+..+.+|||||..|+-.+-..+.. |.++|+++|..+|+.|+.+.++..+. +..+..+++.-.+.++. ....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~----Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA----GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc----CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 444446999999998877776654 66899999999999999999988774 24455555544333332 2334
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC---ccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG---VRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~---~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
.+...|+|+|-.. -..+++++.++|+||-|.-.-.. .+....++....... .++.+++.|||++-+
T Consensus 238 ~G~~~IViGtRSA---------vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~--~~~~lvLgSaTPSle 306 (665)
T PRK14873 238 RGQARVVVGTRSA---------VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ--HGCALLIGGHARTAE 306 (665)
T ss_pred CCCCcEEEEccee---------EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH--cCCcEEEECCCCCHH
Confidence 5668999999754 35668899999999999554322 123445555555444 789999999998866
Q ss_pred HHHHH
Q psy12977 207 VAKWC 211 (226)
Q Consensus 207 ~~~~~ 211 (226)
...++
T Consensus 307 s~~~~ 311 (665)
T PRK14873 307 AQALV 311 (665)
T ss_pred HHHHH
Confidence 55443
No 132
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.92 E-value=1.1e-08 Score=95.18 Aligned_cols=157 Identities=21% Similarity=0.044 Sum_probs=98.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF--- 125 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 125 (226)
|-=++=.|.||+|||++-+=.|+. +. +...|.|..|..-.|.|..|.-+.+++...-......+..|+....+-+
T Consensus 431 GfF~vNMASTGcGKT~aNARImya-Ls-d~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~ 508 (1110)
T TIGR02562 431 GAFGVNMASTGCGKTLANARAMYA-LR-DDKQGARFAIALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLS 508 (1110)
T ss_pred CeEEEEecCCCcchHHHHHHHHHH-hC-CCCCCceEEEEccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHH
Confidence 334677899999999986443333 22 4556779999999999999998888876544333333333332111000
Q ss_pred ------------------C--CC-------------------c--------CCCCCEEEECchHHHHhHhcCCC-CCC--
Q psy12977 126 ------------------G--PR-------------------S--------AQKFDVLITTPNKLVYLLQMDPP-ALN-- 155 (226)
Q Consensus 126 ------------------~--~~-------------------~--------~~~~~IiV~Tp~~l~~~~~~~~~-~~~-- 155 (226)
. .. + .-.+.++|||+.+++.......+ ...
T Consensus 509 ~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ 588 (1110)
T TIGR02562 509 KEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAP 588 (1110)
T ss_pred hhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHH
Confidence 0 00 0 12268999999999987732111 111
Q ss_pred CCC--ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 156 LAN--VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 156 ~~~--~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
+-+ -+.||+||+|..-.. -...+.++++.+...+..++++|||+|+...+.+
T Consensus 589 ll~La~svlVlDEVHaYD~~----~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 589 MLRLMSSDLILDEPDDYEPE----DLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHhcCCCEEEECCccCCHH----HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 112 358999999976443 3345566665443468899999999998764443
No 133
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.85 E-value=3.6e-08 Score=93.19 Aligned_cols=142 Identities=18% Similarity=0.093 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.++.-+||--+|||||++....+-..... ...+.+++++..++|-.|..+.++.+........ ...+.........
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~s~~~Lk~~l~- 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAESTSELKELLE- 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-cccCHHHHHHHHh-
Confidence 34568999999999999865554444433 5577999999999999999999999976544433 2222222112211
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.....|+|||-++|............-.+--.+|+||||+.-.. .....+ ...+ ++...++||.|+
T Consensus 348 --~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G---~~~~~~---~~~~--~~a~~~gFTGTP 413 (962)
T COG0610 348 --DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG---ELAKLL---KKAL--KKAIFIGFTGTP 413 (962)
T ss_pred --cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc---HHHHHH---HHHh--ccceEEEeeCCc
Confidence 12457999999999887765311112222338999999986432 233333 3333 458899999994
No 134
>KOG0952|consensus
Probab=98.85 E-value=2.5e-09 Score=98.18 Aligned_cols=138 Identities=24% Similarity=0.298 Sum_probs=109.0
Q ss_pred hccccCCCCcccccccC--CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 30 NSIFKHFEPHFTITYLS--PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~~~--~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
+..++.++|.|.+.+.- .-..++++-+|||+|||.++...+....... ++.+++|++|.++|+..-.+.+......
T Consensus 922 e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~ 999 (1230)
T KOG0952|consen 922 EALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDEL 999 (1230)
T ss_pred HHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhccc
Confidence 45566889999888743 3457789999999999999999888777644 3469999999999999988877777666
Q ss_pred CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.|.++....++...... ....++++|+||+++....++|...-=+.+++.+|+||.|.+.+.
T Consensus 1000 ~g~k~ie~tgd~~pd~~----~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDVK----AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CCceeEeccCccCCChh----heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 68888777776544322 235678999999999888887666666889999999999987665
No 135
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=1.2e-08 Score=94.03 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=55.6
Q ss_pred ccCCCCccccc----c-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 33 FKHFEPHFTIT----Y-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 33 ~~~~~~~Q~~~----~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
|+.+.|.|... . .+..++++++.+|||+|||++.+.+++...... ...++++|.+.|..-..|+.++++...
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-PEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-cccccEEEEcccchHHHHHHHHHHhhh
Confidence 44556677333 2 556788999999999999999999988766432 223589999999999999999988853
No 136
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.76 E-value=2.6e-08 Score=90.03 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=92.2
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC------CCeEEEEecchhhh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL------GLRAHVIGKIQQAA 122 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~ 122 (226)
.-|+-|.+.||+|||.+|+-.++..-++.. -.+.||++||.++-+-++...+...+++ +.+...+..+ ...
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG--~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~-~~~ 150 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYG--LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD-EDI 150 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhC--ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-hHH
Confidence 357889999999999999988777665433 3489999999999888766655554433 2444444333 222
Q ss_pred hhhCCCcCCCCCEEEECchHHHHh------Hhc----CCC-----CCC---CCCc-cEEEEcccccccccCccchHHHHH
Q psy12977 123 EKFGPRSAQKFDVLITTPNKLVYL------LQM----DPP-----ALN---LANV-EWLIVDESDKLFEAGVRGFRDQLA 183 (226)
Q Consensus 123 ~~~~~~~~~~~~IiV~Tp~~l~~~------~~~----~~~-----~~~---~~~~-~~lViDE~h~l~~~~~~~~~~~i~ 183 (226)
........+.+.+++.|-..+..- +++ ..+ .-+ +..+ -++|+||.|.+...+ .++..+.
T Consensus 151 ~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~--k~~~~i~ 228 (985)
T COG3587 151 EKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD--KTYGAIK 228 (985)
T ss_pred HHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccch--HHHHHHH
Confidence 333334456778888876655433 111 001 000 1122 289999999997632 3444444
Q ss_pred HHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 184 VIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 184 ~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
.+. ..-++=+|||++++...
T Consensus 229 ~l~------pl~ilRfgATfkd~y~~ 248 (985)
T COG3587 229 QLN------PLLILRFGATFKDEYNN 248 (985)
T ss_pred hhC------ceEEEEecccchhhhcC
Confidence 332 23356789999987663
No 137
>KOG0926|consensus
Probab=98.73 E-value=6.4e-08 Score=87.11 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccHHHHHHHHHH-HHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTRELAKQTYNE-TVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~~L~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
+--++|+|.||||||.-.---++++-... ...+.-+-|.-|.|--|..+++. ..++.. ++..+.+.. ++
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI-------Rf 342 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI-------RF 342 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE-------Ee
Confidence 44589999999999976433344432211 11222455667877655555443 233333 344443322 22
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccc-ccC-ccchHHHHHHHHHhcC-----CCCceEEE
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLF-EAG-VRGFRDQLAVIYAACS-----GPNLKRGM 198 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~-~~~-~~~~~~~i~~i~~~~~-----~~~~q~v~ 198 (226)
......+..|-+.|.+.|++-+.+ .+.+.+.+.+|+||||.-. ..+ --+....+..+..... -...+++.
T Consensus 343 d~ti~e~T~IkFMTDGVLLrEi~~---DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 343 DGTIGEDTSIKFMTDGVLLREIEN---DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred ccccCCCceeEEecchHHHHHHHH---hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 223456678999999999998885 5568899999999999432 111 0012222223333321 13567899
Q ss_pred EeeeC
Q psy12977 199 FSATH 203 (226)
Q Consensus 199 ~SAT~ 203 (226)
||||+
T Consensus 420 MSATL 424 (1172)
T KOG0926|consen 420 MSATL 424 (1172)
T ss_pred EeeeE
Confidence 99995
No 138
>KOG0923|consensus
Probab=98.72 E-value=2.4e-07 Score=81.94 Aligned_cols=162 Identities=19% Similarity=0.102 Sum_probs=102.3
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH-HHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN-ETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
+....-++|.|.||||||.-.--.+.+.-. ...+.++-+..|.|--|..++. ..+++...+|-.+++. .+
T Consensus 277 v~e~QVLiI~GeTGSGKTTQiPQyL~EaGy--tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs-------IR 347 (902)
T KOG0923|consen 277 VKEHQVLIIVGETGSGKTTQIPQYLYEAGY--TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS-------IR 347 (902)
T ss_pred HHhCcEEEEEcCCCCCccccccHHHHhccc--ccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE-------EE
Confidence 344567899999999999763222333222 2234457788898877777644 4555555554444322 22
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc-cccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL-FEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l-~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
+...-.++.-|=+.|.+.|++-+.. ..++++.+.+||||||.- +..+ -....++.|.+. .+..+++..|||+
T Consensus 348 FEdcTSekTvlKYMTDGmLlREfL~---epdLasYSViiiDEAHERTL~TD--ILfgLvKDIar~--RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 348 FEDCTSEKTVLKYMTDGMLLREFLS---EPDLASYSVIIVDEAHERTLHTD--ILFGLVKDIARF--RPDLKLLISSATM 420 (902)
T ss_pred eccccCcceeeeeecchhHHHHHhc---cccccceeEEEeehhhhhhhhhh--HHHHHHHHHHhh--CCcceEEeecccc
Confidence 3333445556779999999988774 556999999999999953 2221 122333444433 4789999999998
Q ss_pred chhHHHHHHHhcCCCeEEecCCC
Q psy12977 204 TEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 204 ~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
..+ ....|+.+.-+..+.+|
T Consensus 421 DAe---kFS~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 421 DAE---KFSAFFDDAPIFRIPGR 440 (902)
T ss_pred CHH---HHHHhccCCcEEeccCc
Confidence 733 35567776655555544
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.70 E-value=3.7e-08 Score=90.25 Aligned_cols=71 Identities=27% Similarity=0.315 Sum_probs=53.3
Q ss_pred ccccCCCCccccc-----ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 31 SIFKHFEPHFTIT-----YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 31 ~~~~~~~~~Q~~~-----~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
+..-++.+.|... ..+.+++.+++.||||+|||++|+.|++...... +.+++|.++|+.+-+|..+....+
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhhcch
Confidence 3344555556333 2455667799999999999999999998876543 368999999999999998765554
No 140
>KOG0924|consensus
Probab=98.68 E-value=2.3e-07 Score=82.35 Aligned_cols=159 Identities=18% Similarity=0.069 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH-HHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE-TVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
-.+.-+++.+.||||||.-..-.++..-.. .+.-+-+..|.|.-|..+++. ..++...+|..+.+. .++
T Consensus 369 r~n~vvvivgETGSGKTTQl~QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs-------IRF 438 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQLAQYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS-------IRF 438 (1042)
T ss_pred hhCcEEEEEecCCCCchhhhHHHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE-------EEe
Confidence 345678999999999998654444443221 222445566888777776654 334433344443322 222
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC--CCCceEEEEeeeC
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS--GPNLKRGMFSATH 203 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~--~~~~q~v~~SAT~ 203 (226)
...-..+..|=..|-+.|++-.-. .-.+.+.+.+|+||||.-.-. .+.+..+++... ....+++.+|||+
T Consensus 439 EdvT~~~T~IkymTDGiLLrEsL~---d~~L~kYSviImDEAHERslN-----tDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 439 EDVTSEDTKIKYMTDGILLRESLK---DRDLDKYSVIIMDEAHERSLN-----TDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred eecCCCceeEEEeccchHHHHHhh---hhhhhheeEEEechhhhcccc-----hHHHHHHHHHHHHhhccceEEEeeccc
Confidence 233335567889999999886553 344889999999999953211 122222222221 3578999999998
Q ss_pred chhHHHHHHHhcCCCeEEecCCC
Q psy12977 204 TEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 204 ~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.. .. ...|+.+-=..++.+|
T Consensus 511 ~a--~k-f~nfFgn~p~f~IpGR 530 (1042)
T KOG0924|consen 511 DA--QK-FSNFFGNCPQFTIPGR 530 (1042)
T ss_pred cH--HH-HHHHhCCCceeeecCC
Confidence 63 22 3355553333444443
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.1e-07 Score=87.17 Aligned_cols=145 Identities=21% Similarity=0.200 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
..+.+...+.+++.... .+..+|-... .+..|+ +....||-|||++..+|++-.... |..+-|++.+-.
T Consensus 57 d~~l~eafAvvREA~~R~lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~----GkgVhVVTvNdY 130 (925)
T PRK12903 57 EDIRVEAFAVAREATKRVLGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT----GKGVIVSTVNEY 130 (925)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc----CCceEEEecchh
Confidence 44566666666666555 4555675554 334443 799999999999988887643332 567899999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC-----CCCCCCCccEEEEccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP-----PALNLANVEWLIVDES 167 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~-----~~~~~~~~~~lViDE~ 167 (226)
||..=.+++..+...+|..+.+...+.....+ .....|||+.+|...|--.+-+++ .......+.+.|+||+
T Consensus 131 LA~RDae~mg~vy~fLGLsvG~i~~~~~~~~r---r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEV 207 (925)
T PRK12903 131 LAERDAEEMGKVFNFLGLSVGINKANMDPNLK---REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEV 207 (925)
T ss_pred hhhhhHHHHHHHHHHhCCceeeeCCCCChHHH---HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccc
Confidence 99999999999999999999988765443333 345789999999888754332221 1223567889999999
Q ss_pred cccc
Q psy12977 168 DKLF 171 (226)
Q Consensus 168 h~l~ 171 (226)
|.++
T Consensus 208 DSIL 211 (925)
T PRK12903 208 DSIL 211 (925)
T ss_pred hhee
Confidence 9775
No 142
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.67 E-value=4.6e-08 Score=77.65 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=44.9
Q ss_pred CCCcccccc-cCCCCCe-EEEECCCCchHhHHHHHHHHHHhc----CCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 36 FEPHFTITY-LSPLGRQ-IFACAPTGSGKTAAFLIPIIHSLR----GPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~-~li~apTGsGKT~~~~~~~~~~~~----~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
+++-|..+. ..++... .+|+||+|||||......+...+. .....+.++++++|+++-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 456676664 4556666 899999999999654433333311 1134566999999999999999998877
No 143
>KOG0925|consensus
Probab=98.65 E-value=8.7e-08 Score=82.04 Aligned_cols=161 Identities=19% Similarity=0.101 Sum_probs=93.3
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH-HHHHhhcCCCeEEEEecchhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE-TVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
.+.++..+++.|.||||||.-.--..+....... ..+....|.|--|-+++.. ..++--.+|-.++ .. .
T Consensus 58 ~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~---~~v~CTQprrvaamsva~RVadEMDv~lG~EVG----ys---I 127 (699)
T KOG0925|consen 58 LLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL---TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG----YS---I 127 (699)
T ss_pred HHhcCceEEEEecCCCCccccCcHHHHHHHHhhc---cceeecCchHHHHHHHHHHHHHHhccccchhcc----cc---c
Confidence 4456778999999999999753333333332211 3567777888777776553 2233222222221 11 2
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc-cccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL-FEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l-~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
++++....+.-.-.+|.+.+.+-... ...+.+...+|+||+|.- ++.+ -..-.++.....- +..+++.+|||
T Consensus 128 rfEdC~~~~T~Lky~tDgmLlrEams---~p~l~~y~viiLDeahERtlATD--iLmGllk~v~~~r--pdLk~vvmSat 200 (699)
T KOG0925|consen 128 RFEDCTSPNTLLKYCTDGMLLREAMS---DPLLGRYGVIILDEAHERTLATD--ILMGLLKEVVRNR--PDLKLVVMSAT 200 (699)
T ss_pred cccccCChhHHHHHhcchHHHHHHhh---CcccccccEEEechhhhhhHHHH--HHHHHHHHHHhhC--CCceEEEeecc
Confidence 22221111111223444444444443 334889999999999943 3321 2444455555444 68999999999
Q ss_pred CchhHHHHHHHhcCCCeEEecCC
Q psy12977 203 HTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 203 ~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+. ...+++|+.|+=.++|.+
T Consensus 201 l~---a~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 201 LD---AEKFQRYFGNAPLLAVPG 220 (699)
T ss_pred cc---hHHHHHHhCCCCeeecCC
Confidence 87 444778998888887764
No 144
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.59 E-value=1.3e-06 Score=79.64 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
.-.++.+|-|||||.+..-++-+.+. .+..++++++..++|+.+..+.++...-. +. +...... + .. ..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gF-v~Y~d~~--~-~~---i~ 118 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GF-VNYLDSD--D-YI---ID 118 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cc-eeeeccc--c-cc---cc
Confidence 44689999999999877555544443 23558999999999999999988765211 11 1111111 0 00 00
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHH---HHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQ---LAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~---i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
....+-+++..+.+.+... -.+.+.++||+||+...+..-+...... ...++..+-.....++++-|++.+.
T Consensus 119 ~~~~~rLivqIdSL~R~~~-----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG-----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred ccccCeEEEEehhhhhccc-----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 1234577777777766532 2366789999999997766522112222 2222223325677889999999999
Q ss_pred HHHHHHHhcC-CCeEEe
Q psy12977 207 VAKWCRRKLK-RRVQIN 222 (226)
Q Consensus 207 ~~~~~~~~~~-~p~~i~ 222 (226)
..+++..+.+ +++.+-
T Consensus 194 tvdFl~~~Rp~~~i~vI 210 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVI 210 (824)
T ss_pred HHHHHHHhCCCCcEEEE
Confidence 9999988764 444443
No 145
>KOG0385|consensus
Probab=98.47 E-value=2e-06 Score=77.34 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=101.2
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
..+|-|.|+...-|-|||+-. ++++..+....+...-.+|++|-..| ..+.+.++++++ ++.+....|+.......
T Consensus 183 ~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~ 258 (971)
T KOG0385|consen 183 YENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTP--SLNVVVYHGDKEERAAL 258 (971)
T ss_pred HhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCC--CcceEEEeCCHHHHHHH
Confidence 355778899999999999754 33333332212222246888998665 668888888887 56677777776655544
Q ss_pred CCC--cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 126 GPR--SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 126 ~~~--~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.+. .....+|+|+|.+.....- ..+.--.++++||||+|++-.. ...+.++++.+ ...-.+++|.|+
T Consensus 259 ~r~~~~~~~fdV~iTsYEi~i~dk----~~lk~~~W~ylvIDEaHRiKN~-----~s~L~~~lr~f--~~~nrLLlTGTP 327 (971)
T KOG0385|consen 259 RRDIMLPGRFDVCITSYEIAIKDK----SFLKKFNWRYLVIDEAHRIKNE-----KSKLSKILREF--KTDNRLLLTGTP 327 (971)
T ss_pred HHHhhccCCCceEeehHHHHHhhH----HHHhcCCceEEEechhhhhcch-----hhHHHHHHHHh--cccceeEeeCCc
Confidence 332 2457899999999877642 2333346789999999999654 34555777777 344566778884
Q ss_pred c----hhHHHHHHHhc
Q psy12977 204 T----EDVAKWCRRKL 215 (226)
Q Consensus 204 ~----~~~~~~~~~~~ 215 (226)
= .+++.+++-.+
T Consensus 328 LQNNL~ELWaLLnFll 343 (971)
T KOG0385|consen 328 LQNNLHELWALLNFLL 343 (971)
T ss_pred ccccHHHHHHHHHhhc
Confidence 4 34455554443
No 146
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=3.9e-07 Score=84.65 Aligned_cols=126 Identities=23% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 37 EPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 37 ~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
..+|-.-. .+..|+ +..+.||-|||++..+|++-.... |..+-+++.+-.||..=.+++..+...+|..+.++
T Consensus 140 ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~----G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i 213 (1025)
T PRK12900 140 YDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT----GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVI 213 (1025)
T ss_pred cchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc----CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeee
Confidence 34554443 334444 789999999999999887654442 55688999999999999999999999999999988
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEccccccc
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE~h~l~ 171 (226)
........+ .....|||..+|..-|--.+-++ +.........+.||||+|.++
T Consensus 214 ~~~~~~~~R---r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 214 LNTMRPEER---REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCCCCHHHH---HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 665443333 46689999999987764322221 122335677899999999775
No 147
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.40 E-value=1.3e-06 Score=74.37 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=69.2
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+-++|.|.+|||||+..+.-+ ..+ .....+.++++++++.++.....+.+..... +
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~-~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~-------------------- 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLA-KEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN--P-------------------- 57 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHH-HHh-hccccCCceEEEEecchHHHHHHHHHhhhcc--c--------------------
Confidence 357899999999998664433 333 1223456899999999999988877655430 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc----chHHHHHHHHHh
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR----GFRDQLAVIYAA 188 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~----~~~~~i~~i~~~ 188 (226)
......+..+..+...... ........+++|+||||++...... .....+..+++.
T Consensus 58 -~~~~~~~~~~~~~i~~~~~--~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSE--SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -chhhhhhhhhHHHHhhccc--ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001223344444333321 3345778899999999999874211 234566666654
No 148
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.38 E-value=2.1e-07 Score=72.59 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=68.4
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
..|+-|..+. .+.+...+++.||.|||||+..+..+++.+.+ ....+.++.-|..+..+.+- -+......+..
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--g~~~kiii~Rp~v~~~~~lG----flpG~~~eK~~ 77 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--GEYDKIIITRPPVEAGEDLG----FLPGDLEEKME 77 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--TS-SEEEEEE-S--TT--------SS---------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCcEEEEEecCCCCccccc----cCCCCHHHHHH
Confidence 3455665553 44466778999999999999998888888875 33458999988876532221 11111011100
Q ss_pred EEecchhhhhhhCC--------CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHH
Q psy12977 114 VIGKIQQAAEKFGP--------RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVI 185 (226)
Q Consensus 114 ~~~~~~~~~~~~~~--------~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i 185 (226)
..... -...... .......|-+..++.+ +...++ -.++|+|||+.+ ....++.+
T Consensus 78 p~~~p--~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i--------RGrt~~-~~~iIvDEaQN~-------t~~~~k~i 139 (205)
T PF02562_consen 78 PYLRP--IYDALEELFGKEKLEELIQNGKIEIEPLAFI--------RGRTFD-NAFIIVDEAQNL-------TPEELKMI 139 (205)
T ss_dssp TTTHH--HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG--------TT--B--SEEEEE-SGGG---------HHHHHHH
T ss_pred HHHHH--HHHHHHHHhChHhHHHHhhcCeEEEEehhhh--------cCcccc-ceEEEEecccCC-------CHHHHHHH
Confidence 00000 0000000 0112334555554432 122233 279999999986 44578888
Q ss_pred HHhcCCCCceEEEEeee
Q psy12977 186 YAACSGPNLKRGMFSAT 202 (226)
Q Consensus 186 ~~~~~~~~~q~v~~SAT 202 (226)
+..+ ..+++++++.-.
T Consensus 140 lTR~-g~~skii~~GD~ 155 (205)
T PF02562_consen 140 LTRI-GEGSKIIITGDP 155 (205)
T ss_dssp HTTB--TT-EEEEEE--
T ss_pred Hccc-CCCcEEEEecCc
Confidence 8888 678888887655
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=7.4e-07 Score=83.01 Aligned_cols=127 Identities=27% Similarity=0.239 Sum_probs=91.0
Q ss_pred CCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEE
Q psy12977 36 FEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHV 114 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 114 (226)
+..+|-.-. .+..|+ +..+.||-|||++..+|++-.... |..+-+++.+-.||..=.+++..+..++|..+.+
T Consensus 170 ~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~----GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 170 HYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT----GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred ccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc----CCCcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 334454443 333444 789999999999999887755443 5567899999999999999999999999999998
Q ss_pred Eecch-hhhhhhCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEccccccc
Q psy12977 115 IGKIQ-QAAEKFGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE~h~l~ 171 (226)
+.... .... +.....|||..+|..-|--.+-++ ..........+.|+||+|.++
T Consensus 244 i~~~~~~~~~---rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 244 IDKHQPNSEA---RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cCCCCCCHHH---HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 86532 2222 345688999999987764322221 122335668899999999775
No 150
>KOG1123|consensus
Probab=98.30 E-value=3.6e-07 Score=78.62 Aligned_cols=135 Identities=19% Similarity=0.137 Sum_probs=90.7
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+.-+|..|-|+|||+.-+-+++ .+ +.+++++|.+---++||..+++.+.--....++.+..+..+ ..
T Consensus 321 RSGiIVLPCGAGKtLVGvTAa~-ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke------~~ 387 (776)
T KOG1123|consen 321 RSGIIVLPCGAGKTLVGVTAAC-TI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE------RF 387 (776)
T ss_pred cCceEEEecCCCCceeeeeeee-ee------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc------cC
Confidence 5678999999999987644432 22 34799999999999999999999976666666666655432 24
Q ss_pred CCCCCEEEECchHHHHhHhcCC------CCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDP------PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~------~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
..++.|+|+|-..+..--++.. ..+.-..+.++++||+|.+.+. -|...+ .+... . -.++++||+
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~---MFRRVl-siv~a----H-cKLGLTATL 458 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK---MFRRVL-SIVQA----H-CKLGLTATL 458 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---HHHHHH-HHHHH----H-hhccceeEE
Confidence 4678899999876654222110 1122456789999999988776 233333 33322 2 345779997
Q ss_pred chh
Q psy12977 204 TED 206 (226)
Q Consensus 204 ~~~ 206 (226)
-++
T Consensus 459 vRE 461 (776)
T KOG1123|consen 459 VRE 461 (776)
T ss_pred eec
Confidence 643
No 151
>PF13245 AAA_19: Part of AAA domain
Probab=98.27 E-value=4.1e-06 Score=54.99 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=39.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
++-+++.+|+|||||...+-.+...+......+.++++++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466799999999976665555555321122669999999999999988877
No 152
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.27 E-value=3e-06 Score=66.10 Aligned_cols=124 Identities=23% Similarity=0.292 Sum_probs=67.4
Q ss_pred CCCcccccc-cC-CCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 36 FEPHFTITY-LS-PLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 36 ~~~~Q~~~~-~~-~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
+++-|..+. .+ .++ +-.+++||+|+|||... ..+...+.. .+.++++++||..-+....+.. +...
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~~-------~~~a 70 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA---AGKRVIGLAPTNKAAKELREKT-------GIEA 70 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH---TT--EEEEESSHHHHHHHHHHH-------TS-E
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh---CCCeEEEECCcHHHHHHHHHhh-------Ccch
Confidence 445564443 22 233 45789999999999753 335555543 2468999999998888766642 2221
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC--CCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD--PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~--~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
. |-.+++...... .......+.+++||||+-.+... .+..+++...
T Consensus 71 ~-------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~-------~~~~ll~~~~ 118 (196)
T PF13604_consen 71 Q-------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR-------QLARLLRLAK 118 (196)
T ss_dssp E-------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH-------HHHHHHHHS-
T ss_pred h-------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccCHH-------HHHHHHHHHH
Confidence 1 211111111100 00111556679999999976433 5666666665
Q ss_pred CCCceEEEEeee
Q psy12977 191 GPNLKRGMFSAT 202 (226)
Q Consensus 191 ~~~~q~v~~SAT 202 (226)
..+.+++++.-+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 557888887665
No 153
>PRK10536 hypothetical protein; Provisional
Probab=98.24 E-value=5.5e-06 Score=66.67 Aligned_cols=142 Identities=14% Similarity=0.022 Sum_probs=76.6
Q ss_pred CCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH-----------HHHHHHH
Q psy12977 35 HFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK-----------QTYNETV 102 (226)
Q Consensus 35 ~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~-----------q~~~~~~ 102 (226)
..+..|... ..+.++..+++.||+|+|||+......++.+.+.. ..++++.-|+.+..+ -....+.
T Consensus 59 p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~ 136 (262)
T PRK10536 59 ARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFR 136 (262)
T ss_pred CCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHH
Confidence 334445433 35556678899999999999987777776664322 446777767654322 1222222
Q ss_pred HHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHH
Q psy12977 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQL 182 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i 182 (226)
.+...+... .+... ..... ......|-|...+. ++ ...+ +-+++|+||++.+. ...+
T Consensus 137 pi~D~L~~~----~~~~~-~~~~~--~~~~~~Iei~~l~y----mR----Grtl-~~~~vIvDEaqn~~-------~~~~ 193 (262)
T PRK10536 137 PVYDVLVRR----LGASF-MQYCL--RPEIGKVEIAPFAY----MR----GRTF-ENAVVILDEAQNVT-------AAQM 193 (262)
T ss_pred HHHHHHHHH----hChHH-HHHHH--HhccCcEEEecHHH----hc----CCcc-cCCEEEEechhcCC-------HHHH
Confidence 222211110 01100 01100 01122355554432 22 2223 33799999999863 3577
Q ss_pred HHHHHhcCCCCceEEEEeee
Q psy12977 183 AVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 183 ~~i~~~~~~~~~q~v~~SAT 202 (226)
+.++..+ ..+++++++.-.
T Consensus 194 k~~ltR~-g~~sk~v~~GD~ 212 (262)
T PRK10536 194 KMFLTRL-GENVTVIVNGDI 212 (262)
T ss_pred HHHHhhc-CCCCEEEEeCCh
Confidence 7788887 678888876544
No 154
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.20 E-value=1.7e-05 Score=64.95 Aligned_cols=151 Identities=18% Similarity=0.082 Sum_probs=97.6
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
+.-.++--.||.||--...-.+++.+.+. ..|.|.++.+..|-....+.++.++.. .+.+..+..-.. . ..
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~--~---~~ 132 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY--G---DI 132 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc--C---cC
Confidence 45688999999999977666667666542 347999999999999999999988654 333322222110 0 11
Q ss_pred cCCCCCEEEECchHHHHhHhcCC-CCCC---------CCCccEEEEcccccccccCc-----cchHHHHHHHHHhcCCCC
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDP-PALN---------LANVEWLIVDESDKLFEAGV-----RGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~-~~~~---------~~~~~~lViDE~h~l~~~~~-----~~~~~~i~~i~~~~~~~~ 193 (226)
...+-.|+.+|-..|........ .... -+.-.++|+||||..-.... ......+..+.+.+ |+
T Consensus 133 ~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L--P~ 210 (303)
T PF13872_consen 133 IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL--PN 210 (303)
T ss_pred CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC--CC
Confidence 12234599999888877643210 1111 11224999999998755421 12445666777777 67
Q ss_pred ceEEEEeeeCchhHHHH
Q psy12977 194 LKRGMFSATHTEDVAKW 210 (226)
Q Consensus 194 ~q~v~~SAT~~~~~~~~ 210 (226)
.+++.+|||--.+.+++
T Consensus 211 ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 211 ARVVYASATGASEPRNM 227 (303)
T ss_pred CcEEEecccccCCCcee
Confidence 77999999976665554
No 155
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=7.9e-05 Score=63.91 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=74.4
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEE-EEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAV-IVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~i-il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.+.+++.||||+|||....--+..........+.++. +-+.+...+. .++++.+.+..+..+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa--~eQL~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA--KKQIQTYGDIMGIPVKA------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH--HHHHHHHhhcCCcceEe-------------
Confidence 4678999999999998765433322221111222333 4344322211 12355565555554321
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc-hh
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT-ED 206 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~-~~ 206 (226)
+-++..+...+.. ..+.+++++|++.+..... .....+..++....++.--.+.+|||-. .+
T Consensus 239 ---------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 239 ---------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ---------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 1234445444443 4578999999999775321 2345566666555323235577789865 56
Q ss_pred HHHHHHHhc
Q psy12977 207 VAKWCRRKL 215 (226)
Q Consensus 207 ~~~~~~~~~ 215 (226)
+.+.+++|-
T Consensus 302 ~~~~~~~~~ 310 (388)
T PRK12723 302 VKEIFHQFS 310 (388)
T ss_pred HHHHHHHhc
Confidence 677777773
No 156
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.15 E-value=2.9e-05 Score=67.23 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=90.4
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhhcC-CC--------eEE------------------------EEecchhhhh
Q psy12977 77 PKNLGFRAVIVCPTRELAKQTYNETVRLSEGL-GL--------RAH------------------------VIGKIQQAAE 123 (226)
Q Consensus 77 ~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~-~~--------~~~------------------------~~~~~~~~~~ 123 (226)
+.-..|+++|++|+|.-|.++.+.+.++.... .. ... .+.|...+.-
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 34446899999999999999999888876541 00 000 0000000000
Q ss_pred hhC----------CCcCCCCCEEEECchHHHHhHhc----CCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 124 KFG----------PRSAQKFDVLITTPNKLVYLLQM----DPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 124 ~~~----------~~~~~~~~IiV~Tp~~l~~~~~~----~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+.- ...-.++|||||+|=-|...+.. ....--++++.++|+|.+|.++-. .|+.+..+++.+
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ----NW~Hv~~v~~~l 188 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ----NWEHVLHVFEHL 188 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh----hHHHHHHHHHHh
Confidence 000 00036699999999988877763 222333899999999999976543 566666666655
Q ss_pred C-----------------------CCCceEEEEeeeCchhHHHHHHHhcCC
Q psy12977 190 S-----------------------GPNLKRGMFSATHTEDVAKWCRRKLKR 217 (226)
Q Consensus 190 ~-----------------------~~~~q~v~~SAT~~~~~~~~~~~~~~~ 217 (226)
. ..-.|++++|+...+++..+.++.+.|
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N 239 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQN 239 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcC
Confidence 2 124799999999999999999986654
No 157
>KOG0387|consensus
Probab=98.15 E-value=1.7e-05 Score=71.85 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhh-----
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQA----- 121 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----- 121 (226)
.+++-=|+--.=|-|||.-.+.- +..+.........++|+||.. +..||.+++..++..+.+ ....+....
T Consensus 222 ~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~p~~rv--~ilh~t~s~~r~~~ 297 (923)
T KOG0387|consen 222 CQRAGGILGDEMGLGKTIQIISF-LAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWWPPFRV--FILHGTGSGARYDA 297 (923)
T ss_pred hccCCCeecccccCccchhHHHH-HHHHhhcccccCceEEEccHH-HHHHHHHHHHHhCcceEE--EEEecCCccccccc
Confidence 44555678888999999653222 222211111225799999984 889999999999875443 333333221
Q ss_pred -------hhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCc
Q psy12977 122 -------AEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNL 194 (226)
Q Consensus 122 -------~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~ 194 (226)
.....+......+|+++|-..+.- ....+.--.++++|+||.|.+-..+ ..+...++++ ...
T Consensus 298 ~~~~~~~~~~L~r~~~~~~~ilitty~~~r~----~~d~l~~~~W~y~ILDEGH~IrNpn-----s~islackki--~T~ 366 (923)
T KOG0387|consen 298 SHSSHKKDKLLIRKVATDGGILITTYDGFRI----QGDDLLGILWDYVILDEGHRIRNPN-----SKISLACKKI--RTV 366 (923)
T ss_pred chhhhhhhhhheeeecccCcEEEEehhhhcc----cCcccccccccEEEecCcccccCCc-----cHHHHHHHhc--ccc
Confidence 011112334556899999775532 2234555677899999999986552 3444555566 466
Q ss_pred eEEEEeeeCc
Q psy12977 195 KRGMFSATHT 204 (226)
Q Consensus 195 q~v~~SAT~~ 204 (226)
+.+.+|.|+=
T Consensus 367 ~RiILSGTPi 376 (923)
T KOG0387|consen 367 HRIILSGTPI 376 (923)
T ss_pred ceEEeeCccc
Confidence 7777788843
No 158
>PRK06526 transposase; Provisional
Probab=98.13 E-value=3.5e-05 Score=62.51 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=69.5
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
++..++++++.||+|+|||............. +.++++. ...++.++.... ..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~----g~~v~f~-t~~~l~~~l~~~----~~------------------ 146 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQA----GHRVLFA-TAAQWVARLAAA----HH------------------ 146 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHC----CCchhhh-hHHHHHHHHHHH----Hh------------------
Confidence 34557899999999999997654433333332 3345443 333344443211 00
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
-.+ +...+.. +.+.++||+||+|...... .....+..++.... .+..+++.|...+
T Consensus 147 ------------~~~---~~~~l~~------l~~~dlLIIDD~g~~~~~~--~~~~~L~~li~~r~-~~~s~IitSn~~~ 202 (254)
T PRK06526 147 ------------AGR---LQAELVK------LGRYPLLIVDEVGYIPFEP--EAANLFFQLVSSRY-ERASLIVTSNKPF 202 (254)
T ss_pred ------------cCc---HHHHHHH------hccCCEEEEcccccCCCCH--HHHHHHHHHHHHHH-hcCCEEEEcCCCH
Confidence 001 1111221 3457899999999764321 23344555554432 2345888888776
Q ss_pred hhHHH----------HHHHhcCCCeEEecC
Q psy12977 205 EDVAK----------WCRRKLKRRVQINVG 224 (226)
Q Consensus 205 ~~~~~----------~~~~~~~~p~~i~~~ 224 (226)
.+..+ .+.+..+....++++
T Consensus 203 ~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~ 232 (254)
T PRK06526 203 GRWGEVFGDDVVAAAMIDRLVHHAEVISLK 232 (254)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCceEEeec
Confidence 65433 245555555555544
No 159
>KOG0390|consensus
Probab=98.13 E-value=4.8e-05 Score=69.64 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=91.8
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCC---CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh---
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKN---LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE--- 123 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~---~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 123 (226)
.-.++.-.+|+|||+-...-+-..++..+. .-.+.+|++|. .|+..|.+++..+.....+....+.+......
T Consensus 264 ~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~ 342 (776)
T KOG0390|consen 264 GGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKL 342 (776)
T ss_pred CceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhh
Confidence 346788889999998654333333333222 11589999997 59999999999997654444444444433200
Q ss_pred ---hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 124 ---KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 124 ---~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....-......+++-+-+.+.+++. .+....++++|+||.|.+-. ....+...+..+ ...+.|++|
T Consensus 343 ~sil~~~~~~~~~~vli~sye~~~~~~~----~il~~~~glLVcDEGHrlkN-----~~s~~~kaL~~l--~t~rRVLLS 411 (776)
T KOG0390|consen 343 KSILFLGYKQFTTPVLIISYETASDYCR----KILLIRPGLLVCDEGHRLKN-----SDSLTLKALSSL--KTPRRVLLT 411 (776)
T ss_pred HHHHHhhhhheeEEEEeccHHHHHHHHH----HHhcCCCCeEEECCCCCccc-----hhhHHHHHHHhc--CCCceEEee
Confidence 0000011223466667777665554 33466889999999998743 333444455555 455678889
Q ss_pred eeC-chhHHHHHHH
Q psy12977 201 ATH-TEDVAKWCRR 213 (226)
Q Consensus 201 AT~-~~~~~~~~~~ 213 (226)
.|+ -.++.++.+-
T Consensus 412 GTp~QNdl~EyFnl 425 (776)
T KOG0390|consen 412 GTPIQNDLKEYFNL 425 (776)
T ss_pred CCcccccHHHHHHH
Confidence 994 3455555443
No 160
>PRK08181 transposase; Validated
Probab=98.13 E-value=3.2e-05 Score=63.17 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=72.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
+...++++++.||+|+|||..... +...+... +.+++++ +..+|..+..... ..
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~---g~~v~f~-~~~~L~~~l~~a~----~~----------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN---GWRVLFT-RTTDLVQKLQVAR----RE----------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc---CCceeee-eHHHHHHHHHHHH----hC-----------------
Confidence 344678999999999999965433 33333221 3345554 4555665543210 00
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.+... .+.. +.+.++||+||.+...... .....+..++.... .+..+++.|...+
T Consensus 156 -------------~~~~~---~l~~------l~~~dLLIIDDlg~~~~~~--~~~~~Lf~lin~R~-~~~s~IiTSN~~~ 210 (269)
T PRK08181 156 -------------LQLES---AIAK------LDKFDLLILDDLAYVTKDQ--AETSVLFELISARY-ERRSILITANQPF 210 (269)
T ss_pred -------------CcHHH---HHHH------HhcCCEEEEeccccccCCH--HHHHHHHHHHHHHH-hCCCEEEEcCCCH
Confidence 01112 2222 4467899999999764431 33456666666552 2457777777766
Q ss_pred hhHHHH----------HHHhcCCCeEEecC
Q psy12977 205 EDVAKW----------CRRKLKRRVQINVG 224 (226)
Q Consensus 205 ~~~~~~----------~~~~~~~p~~i~~~ 224 (226)
++..+. +.+.++....++++
T Consensus 211 ~~w~~~~~D~~~a~aildRL~h~~~~i~~~ 240 (269)
T PRK08181 211 GEWNRVFPDPAMTLAAVDRLVHHATIFEMN 240 (269)
T ss_pred HHHHHhcCCccchhhHHHhhhcCceEEecC
Confidence 665443 35555555555554
No 161
>KOG0989|consensus
Probab=98.04 E-value=3e-05 Score=63.37 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc---hhHHHHHHHh
Q psy12977 152 PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT---EDVAKWCRRK 214 (226)
Q Consensus 152 ~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~---~~~~~~~~~~ 214 (226)
...+.+..+.+|+||||.|... .+..+.+.++.. +..+.+++.+..+. +.+..-+.+|
T Consensus 123 ~~~~~~~fKiiIlDEcdsmtsd----aq~aLrr~mE~~-s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 123 DGYPCPPFKIIILDECDSMTSD----AQAALRRTMEDF-SRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred cCCCCCcceEEEEechhhhhHH----HHHHHHHHHhcc-ccceEEEEEcCChhhCChHHHhhHHHh
Confidence 4455777899999999999876 888899999886 56778888777643 4444444444
No 162
>KOG1803|consensus
Probab=98.02 E-value=1.1e-05 Score=71.14 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=49.2
Q ss_pred ccccCCCCcccccc-cCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy12977 31 SIFKHFEPHFTITY-LSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 31 ~~~~~~~~~Q~~~~-~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
..-+.+++.|..+- ...+. .-.+++||||+|||.....-+.+.+.+ +.++++..||+.-+..+.+.+.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc----CCeEEEEcCchHHHHHHHHHhc
Confidence 33445666676664 33333 457899999999999876666666654 5689999999999888888543
No 163
>KOG1132|consensus
Probab=98.00 E-value=4.1e-05 Score=70.13 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
...+|||.|-.+.+.+-.-+....+++.+ ..||+||||.+-+
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 57789999999998887666434455544 4999999998754
No 164
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.99 E-value=4.6e-05 Score=69.04 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=80.6
Q ss_pred Ccccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEe
Q psy12977 38 PHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIG 116 (226)
Q Consensus 38 ~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 116 (226)
+-|+.+. ....++-.++.|++|+|||....--+............++.+.+||..=|..+.+.+.......+..
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~----- 229 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT----- 229 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-----
Confidence 4566554 5566778999999999999764322222111112233578889999998888888776554333211
Q ss_pred cchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC----CCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 117 KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD----PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~----~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
+... .....-..|-.+++...... ....+....+++|+||+-++ +. ..+..+++.+ ++
T Consensus 230 ----~~~~------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d~------~lm~~ll~al-~~ 291 (615)
T PRK10875 230 ----DEQK------KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-DL------PMMARLIDAL-PP 291 (615)
T ss_pred ----hhhh------hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-cH------HHHHHHHHhc-cc
Confidence 0000 00001122333333221110 01123445689999999854 32 3556667777 57
Q ss_pred CceEEEEeee
Q psy12977 193 NLKRGMFSAT 202 (226)
Q Consensus 193 ~~q~v~~SAT 202 (226)
.++++++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8899988766
No 165
>KOG0389|consensus
Probab=97.99 E-value=2.1e-05 Score=71.15 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=90.1
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
+-+-|+.-.=|-|||.-. ++.+..+.+....|| -+|+||+..| +.|.+++..||+ ..++...+|.+.........
T Consensus 418 ~l~gILADEMGLGKTiQv-IaFlayLkq~g~~gp-HLVVvPsSTl-eNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 418 KLNGILADEMGLGKTIQV-IAFLAYLKQIGNPGP-HLVVVPSSTL-ENWLREFAKWCP--SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred cccceehhhccCcchhHH-HHHHHHHHHcCCCCC-cEEEecchhH-HHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHH
Confidence 345689999999999654 333333333333343 4677898765 667777888876 56777777776544333222
Q ss_pred c---CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC-c
Q psy12977 129 S---AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH-T 204 (226)
Q Consensus 129 ~---~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~-~ 204 (226)
+ ....+|+++|-+.+..-- .+...+.-.+++++|+||.|.+-.. .....+.++. + +.-+.+++|.|+ .
T Consensus 493 i~~~~~~ydVllTTY~la~~~k-dDRsflk~~~~n~viyDEgHmLKN~----~SeRy~~LM~-I--~An~RlLLTGTPLQ 564 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASSK-DDRSFLKNQKFNYVIYDEGHMLKNR----TSERYKHLMS-I--NANFRLLLTGTPLQ 564 (941)
T ss_pred HhccCCCccEEEEEeecccCCh-HHHHHHHhccccEEEecchhhhhcc----chHHHHHhcc-c--cccceEEeeCCccc
Confidence 2 236899999987654211 1112233457889999999977665 2223333332 2 345677778884 3
Q ss_pred hhHHHHH
Q psy12977 205 EDVAKWC 211 (226)
Q Consensus 205 ~~~~~~~ 211 (226)
.++.+++
T Consensus 565 NNL~ELi 571 (941)
T KOG0389|consen 565 NNLKELI 571 (941)
T ss_pred ccHHHHH
Confidence 4444444
No 166
>COG4889 Predicted helicase [General function prediction only]
Probab=97.96 E-value=2.1e-05 Score=72.19 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=75.8
Q ss_pred cCCCCcccccc-----cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 34 KHFEPHFTITY-----LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 34 ~~~~~~Q~~~~-----~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
+++.|.|+.+. .+..+..-=+.+..|+|||+..+- +.+++. ..++++++|+.+|..|..+.+..-.+.
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-----~~~iL~LvPSIsLLsQTlrew~~~~~l- 232 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-----AARILFLVPSISLLSQTLREWTAQKEL- 232 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-----hhheEeecchHHHHHHHHHHHhhccCc-
Confidence 46677775552 111122222445689999987643 344443 258999999999999998876554322
Q ss_pred CCeEEEEecchhhh------------------------hhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEE
Q psy12977 109 GLRAHVIGKIQQAA------------------------EKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIV 164 (226)
Q Consensus 109 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lVi 164 (226)
......+.++.... ....+....+--|+.+|-+.+...-.- ....+..++++|.
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDliic 310 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDLIIC 310 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccEEEe
Confidence 22222222111100 011112234456778887777655433 3445788999999
Q ss_pred cccccccc
Q psy12977 165 DESDKLFE 172 (226)
Q Consensus 165 DE~h~l~~ 172 (226)
||||+-.+
T Consensus 311 DEAHRTtG 318 (1518)
T COG4889 311 DEAHRTTG 318 (1518)
T ss_pred cchhcccc
Confidence 99998754
No 167
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.95 E-value=7.1e-05 Score=67.62 Aligned_cols=140 Identities=18% Similarity=0.155 Sum_probs=78.2
Q ss_pred cccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-C-CCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 39 HFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-P-KNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 39 ~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-~-~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
.|+.+. ..+.++-.+++|++|||||..... ++..+.. . ...+.++++.+||..=+..+.+.+......+...
T Consensus 149 ~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~---- 223 (586)
T TIGR01447 149 WQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA---- 223 (586)
T ss_pred HHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc----
Confidence 454443 556678899999999999986432 2222211 1 1113579999999988888777665543322211
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhHhc----CCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCC
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQM----DPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG 191 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~----~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~ 191 (226)
.. .. ....+-..|-.+++..... .....+...+++||+||+-++. . ..+..+++.+ +
T Consensus 224 ----~~-~~------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-~------~l~~~ll~al-~ 284 (586)
T TIGR01447 224 ----EA-LI------AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-L------PLMAKLLKAL-P 284 (586)
T ss_pred ----hh-hh------hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-H------HHHHHHHHhc-C
Confidence 00 00 0001113333333322110 0011224468999999998552 2 3566667777 5
Q ss_pred CCceEEEEeee
Q psy12977 192 PNLKRGMFSAT 202 (226)
Q Consensus 192 ~~~q~v~~SAT 202 (226)
+..++|++.-.
T Consensus 285 ~~~rlIlvGD~ 295 (586)
T TIGR01447 285 PNTKLILLGDK 295 (586)
T ss_pred CCCEEEEECCh
Confidence 78889887665
No 168
>KOG1802|consensus
Probab=97.95 E-value=3.3e-05 Score=68.90 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=58.6
Q ss_pred HHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 27 VVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 27 ~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
.+...++.+++.-|+.+. ..+++.-.+++||+|+|||....--+++.++. ....+++.+|+.--+.|.++.+.+-+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh---cCCceEEEcccchhHHHHHHHHHhcC
Confidence 344566777788887775 55666678999999999998876666776664 24479999999999999998877663
No 169
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.93 E-value=0.00016 Score=63.64 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.||+|+|||... ..+...+... ..+.+++++ +..++..+....++.-
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~-~~~~~v~yi-~~~~~~~~~~~~~~~~------------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK-NPNAKVVYV-TSEKFTNDFVNALRNN------------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh-CCCCeEEEE-EHHHHHHHHHHHHHcC-------------------------
Confidence 45899999999999754 3444444322 123456665 5455555443332110
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA 208 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~ 208 (226)
+.+.+.+. +.+.++|++||+|.+.... .....+..++..+...+.++++.|...|.++.
T Consensus 201 ---------~~~~~~~~---------~~~~dlLiiDDi~~l~~~~--~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK---------YRSVDVLLIDDIQFLAGKE--RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH---------HhcCCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 11122221 2357799999999875541 23445555555553445677775555665543
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=0.00025 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
.++.+++.||+|+|||... -.+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA-RAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 4678999999999999743 3333333
No 171
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.92 E-value=1.9e-05 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=14.1
Q ss_pred CCCeEEEECCCCchHhHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~ 69 (226)
+++.+++.||+|+|||......
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHH
Confidence 3567899999999999875443
No 172
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.89 E-value=0.00097 Score=56.91 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=87.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
++.+.+.||||.|||...+--+..... ......-+||-+.|...+-. ++++.+++-++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~--EQLk~Ya~im~vp~---------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAV--EQLKTYADIMGVPL---------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHH--HHHHHHHHHhCCce----------------
Confidence 788999999999999875543333331 12234467888888777654 66777776666654
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee-CchhH
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT-HTEDV 207 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT-~~~~~ 207 (226)
.++-+|.-|...+.. +.+.+++.+|=+-+-..+. .....+..+..... +---.+.+||| -.+++
T Consensus 264 ------~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs~~D~--~~i~el~~~~~~~~-~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 264 ------EVVYSPKELAEAIEA------LRDCDVILVDTAGRSQYDK--EKIEELKELIDVSH-SIEVYLVLSATTKYEDL 328 (407)
T ss_pred ------EEecCHHHHHHHHHH------hhcCCEEEEeCCCCCccCH--HHHHHHHHHHhccc-cceEEEEEecCcchHHH
Confidence 455677777776664 5667899988887543221 35556666655542 22233556787 44677
Q ss_pred HHHHHHhcCCC
Q psy12977 208 AKWCRRKLKRR 218 (226)
Q Consensus 208 ~~~~~~~~~~p 218 (226)
++.+.+|-.-|
T Consensus 329 kei~~~f~~~~ 339 (407)
T COG1419 329 KEIIKQFSLFP 339 (407)
T ss_pred HHHHHHhccCC
Confidence 88888876544
No 173
>PRK08727 hypothetical protein; Validated
Probab=97.88 E-value=0.00024 Score=56.92 Aligned_cols=49 Identities=4% Similarity=-0.053 Sum_probs=30.4
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
.+.++||+||+|.+.... .....+..++......+.++++.|...|.+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~--~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR--EDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 355799999999886542 2334455555544334556777666666655
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=0.00026 Score=57.93 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=62.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.|++|+|||... .++.+.+... +..++++ +..++..++...+..- . .
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~---~~~v~~~-~~~~ll~~i~~~~~~~----~--------------~----- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK---GVPVIFV-NFPQLLNRIKSTYKSS----G--------------K----- 166 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc---CCeEEEE-EHHHHHHHHHHHHhcc----c--------------c-----
Confidence 45999999999999754 3455555432 2344444 5555555443322100 0 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
.+...+ +.. +.+.++||+||++.-.... .....+..++........++++.|...|.++.+
T Consensus 167 --------~~~~~~---~~~------l~~~dlLviDDlg~e~~t~--~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 --------EDENEI---IRS------LVNADLLILDDLGAERDTE--WAREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred --------ccHHHH---HHH------hcCCCEEEEecccCCCCCH--HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 011112 221 4467899999996432211 244556666665544567788888777766543
No 175
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00017 Score=63.29 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=66.7
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.|++|+|||... ..+.+.+.. ...+.+++|+.+ .++..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~-~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIES-NFSDLKVSYMSG-DEFARKAVDILQKTH------------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHH-hCCCCeEEEEEH-HHHHHHHHHHHHHhh------------------------
Confidence 45889999999999543 455555432 123446666544 566666555442210
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
+.+.+.... +.+.++||+||+|.+.... .....+..++..+...+.|+++.|-..|.+.
T Consensus 195 -----------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHHH------hccCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111222222 3467899999999875431 3455666666666455668888766666555
No 176
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.83 E-value=4e-05 Score=60.84 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=66.9
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+.+.||+|+|||- .+.++.+.+.+. .++.+++|+ +..+......+.+++-
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~-~~~~~v~y~-~~~~f~~~~~~~~~~~------------------------- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQ-HPGKRVVYL-SAEEFIREFADALRDG------------------------- 86 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHH-CTTS-EEEE-EHHHHHHHHHHHHHTT-------------------------
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhc-cccccceee-cHHHHHHHHHHHHHcc-------------------------
Confidence 458999999999997 345555555321 124466666 3334554443332210
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
..+.+. .. +.+.+++++|++|.+.+.. .....+..++..+...+.++++.|...|.++
T Consensus 87 ---------~~~~~~---~~------~~~~DlL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ---------EIEEFK---DR------LRSADLLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ---------SHHHHH---HH------HCTSSEEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ---------cchhhh---hh------hhcCCEEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111222 22 4478899999999886542 3566777777777566778888887877654
No 177
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.83 E-value=3.8e-05 Score=63.67 Aligned_cols=70 Identities=21% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 37 EPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 37 ~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
++-|...... .+++++|.|++|||||.+.+.-+...+........+.+++++|+..+..+.+.+......
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 3445444433 678999999999999998777666666554455668999999999999999988887554
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00028 Score=61.85 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=63.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.||+|+|||... ..+.+.+... ..+.+++|+. ..++..+....++. +
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~-~~~~~v~yi~-~~~f~~~~~~~~~~-----~-------------------- 182 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN-EPDLRVMYIT-SEKFLNDLVDSMKE-----G-------------------- 182 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEE-HHHHHHHHHHHHhc-----c--------------------
Confidence 35899999999999754 4444544322 2234677764 33444433332210 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
+.+.+...+. .+.+++++||+|.+.+.. .....+..++..+...+.++++.|...|.++..
T Consensus 183 ---------~~~~f~~~~~--------~~~dvLlIDDi~~l~~~~--~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 183 ---------KLNEFREKYR--------KKVDVLLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_pred ---------cHHHHHHHHH--------hcCCEEEEechhhhcCcH--HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH
Confidence 0112222111 246799999999886542 233445555555534456777766666666555
Q ss_pred HHH
Q psy12977 210 WCR 212 (226)
Q Consensus 210 ~~~ 212 (226)
+..
T Consensus 244 l~~ 246 (440)
T PRK14088 244 FQD 246 (440)
T ss_pred HHH
Confidence 433
No 179
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00047 Score=58.81 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc-ccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC-PTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
...++.+++.||||+|||....--+........ ..++.++. .+... --.++++.+.+..+..+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G--~~~V~lit~D~~R~--ga~EqL~~~a~~~gv~~~~---------- 199 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFG--ASKVALLTTDSYRI--GGHEQLRIFGKILGVPVHA---------- 199 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecccccc--cHHHHHHHHHHHcCCceEe----------
Confidence 445788999999999999876544433332211 12333333 23211 2234555555555544322
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
+-++..+...+.. +.+.++++||++-...... ...+.+..+.. ...+...++.+|||-.
T Consensus 200 ------------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~d~--~l~e~La~L~~-~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 200 ------------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQRDR--TVSDQIAMLHG-ADTPVQRLLLLNATSH 258 (374)
T ss_pred ------------cCCcccHHHHHHH------hcCCCEEEEcCCCCCcccH--HHHHHHHHHhc-cCCCCeEEEEecCccC
Confidence 3344444444443 4456899999997543221 23333433322 2123344677899864
Q ss_pred -hhHHHHHHHhc
Q psy12977 205 -EDVAKWCRRKL 215 (226)
Q Consensus 205 -~~~~~~~~~~~ 215 (226)
+.+.+.+++|.
T Consensus 259 ~~~l~evi~~f~ 270 (374)
T PRK14722 259 GDTLNEVVQAYR 270 (374)
T ss_pred hHHHHHHHHHHH
Confidence 45566666664
No 180
>KOG4439|consensus
Probab=97.78 E-value=7e-05 Score=67.15 Aligned_cols=119 Identities=24% Similarity=0.317 Sum_probs=77.8
Q ss_pred eEEEECCCCchHhHHHHHHHHHHh-----cC--CCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSL-----RG--PKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~-----~~--~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
--|+...-|-|||++.+..+++.- ++ ..... .++|+||.. |..||..++......-..++.+++|... .
T Consensus 347 GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~PaS-li~qW~~Ev~~rl~~n~LsV~~~HG~n~--r 422 (901)
T KOG4439|consen 347 GGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPAS-LIHQWEAEVARRLEQNALSVYLYHGPNK--R 422 (901)
T ss_pred CcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcHH-HHHHHHHHHHHHHhhcceEEEEecCCcc--c
Confidence 357788889999997554444332 11 11122 599999985 8999999988888777788888877653 2
Q ss_pred hhCCCcCCCCCEEEECchHHHH----hHhcCCCCCCCC--CccEEEEccccccccc
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVY----LLQMDPPALNLA--NVEWLIVDESDKLFEA 173 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~----~~~~~~~~~~~~--~~~~lViDE~h~l~~~ 173 (226)
..........||+|+|..-+.. -.......-.+. .+..+|+||||.+-+.
T Consensus 423 ~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 423 EISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred cCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 2223345678999999876655 111111112233 3468999999988655
No 181
>KOG1000|consensus
Probab=97.78 E-value=0.00025 Score=61.43 Aligned_cols=151 Identities=20% Similarity=0.188 Sum_probs=88.5
Q ss_pred ccCCCCccccc--ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC
Q psy12977 33 FKHFEPHFTIT--YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL 110 (226)
Q Consensus 33 ~~~~~~~Q~~~--~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~ 110 (226)
+..+.|.|..- +.+..|..+++...-|-|||.-++. +...++.. .-.+|+||.. +-..+.+.+..+.+...-
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraE----wplliVcPAs-vrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAE----WPLLIVCPAS-VRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhc----CcEEEEecHH-HhHHHHHHHHHhcccccc
Confidence 34456666443 3556788899999999999986543 33333322 2368889974 667788888888765433
Q ss_pred eEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 111 RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
+..+.++. +..........|.|.+.+.+..+-. .+.....+.+|+||+|.+-+.. ....+.++..+
T Consensus 270 -i~vv~~~~----D~~~~~~t~~~v~ivSye~ls~l~~----~l~~~~~~vvI~DEsH~Lk~sk----tkr~Ka~~dll- 335 (689)
T KOG1000|consen 270 -IFVVDKSS----DPLPDVCTSNTVAIVSYEQLSLLHD----ILKKEKYRVVIFDESHMLKDSK----TKRTKAATDLL- 335 (689)
T ss_pred -eEEEeccc----CCccccccCCeEEEEEHHHHHHHHH----HHhcccceEEEEechhhhhccc----hhhhhhhhhHH-
Confidence 22222221 1111122334577877776655432 3334568899999999886542 11122222222
Q ss_pred CCCceEEEEeeeC
Q psy12977 191 GPNLKRGMFSATH 203 (226)
Q Consensus 191 ~~~~q~v~~SAT~ 203 (226)
..-..++++|.|+
T Consensus 336 k~akhvILLSGTP 348 (689)
T KOG1000|consen 336 KVAKHVILLSGTP 348 (689)
T ss_pred HHhhheEEecCCc
Confidence 2234678889884
No 182
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.77 E-value=0.00032 Score=60.86 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.||+|+|||... ..+.+.+... ..+.+++++. ..++..+....+..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~-~~~~~v~yi~-~~~~~~~~~~~~~~-------------------------- 187 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN-NPNAKVVYVS-SEKFTNDFVNALRN-------------------------- 187 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh-CCCCcEEEEE-HHHHHHHHHHHHHc--------------------------
Confidence 35789999999999754 4445554322 2244677763 33444433222110
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
+ +.+.+.+. +.+.++|++||+|.+.+.. .....+..++..+...+.++++.|...|.++..
T Consensus 188 --~------~~~~~~~~---------~~~~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 188 --N------KMEEFKEK---------YRSVDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred --C------CHHHHHHH---------HHhCCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 0 11122222 2246799999999876541 233445555554434456777655555655543
No 183
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00044 Score=60.61 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=61.8
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.||+|+|||... ..+.+.+... +.+++++. ...+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~---~~~v~yi~-~~~f~~~~~~~l~~--------------~----------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES---GGKILYVR-SELFTEHLVSAIRS--------------G----------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc---CCCEEEee-HHHHHHHHHHHHhc--------------c-----------
Confidence 45899999999999743 3455554432 44667664 34444433322210 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA 208 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~ 208 (226)
..+.+... ..+.+++++||+|.+.+.. .....+..++..+...+.|+++.|.+.|.++.
T Consensus 192 ---------~~~~f~~~---------~~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 192 ---------EMQRFRQF---------YRNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ---------hHHHHHHH---------cccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 00111111 2367899999999876542 24445555555443456677776666676654
No 184
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00041 Score=62.54 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=70.3
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSA 130 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (226)
.+++.|++|+|||... ..+.+.+.. ...+.+++|+ +..+++++....+..-
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~-~~~g~~V~Yi-taeef~~el~~al~~~-------------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARR-LYPGTRVRYV-SSEEFTNEFINSIRDG-------------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHH-hCCCCeEEEe-eHHHHHHHHHHHHHhc--------------------------
Confidence 4899999999999743 344454432 1123466665 4455555443322110
Q ss_pred CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH--
Q psy12977 131 QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA-- 208 (226)
Q Consensus 131 ~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~-- 208 (226)
..+.+. .+ +.++++|+|||+|.+.... .....+..++..+...+.++++.|-..|.++.
T Consensus 367 --------~~~~f~---~~------y~~~DLLlIDDIq~l~gke--~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 367 --------KGDSFR---RR------YREMDILLVDDIQFLEDKE--STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred --------cHHHHH---HH------hhcCCEEEEehhccccCCH--HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhc
Confidence 001111 11 3457899999999886542 34456666776665556788887666666543
Q ss_pred -HHHHHhcCCCeEEec
Q psy12977 209 -KWCRRKLKRRVQINV 223 (226)
Q Consensus 209 -~~~~~~~~~p~~i~~ 223 (226)
+.+..-+...+.+++
T Consensus 428 ~~rL~SRf~~GLvv~I 443 (617)
T PRK14086 428 EDRLRNRFEWGLITDV 443 (617)
T ss_pred cHHHHhhhhcCceEEc
Confidence 223334444444444
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=97.67 E-value=0.00027 Score=56.46 Aligned_cols=46 Identities=7% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.+.+++++||+|.+.... .+...+..++......+.+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~--~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNE--EWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 466899999999876442 3444566666655344556767777643
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.64 E-value=0.00081 Score=56.62 Aligned_cols=129 Identities=17% Similarity=0.092 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.++++++.||||+|||.... .+...+... +..++++ +..++..+....- + . . . .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~---g~~V~y~-t~~~l~~~l~~~~--~-~--~--------~----~---- 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR---GKSVIYR-TADELIEILREIR--F-N--N--------D----K---- 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC---CCeEEEE-EHHHHHHHHHHHH--h-c--c--------c----h----
Confidence 35889999999999997543 444444322 3355554 5555655443210 0 0 0 0 0
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
.....+.. +.++++||+|+.+...... .....+..++......+.++++.|.-.|+++
T Consensus 236 --------------~~~~~~~~------l~~~DLLIIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 236 --------------ELEEVYDL------LINCDLLIIDDLGTEKITE--FSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred --------------hHHHHHHH------hccCCEEEEeccCCCCCCH--HHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 00001121 4467899999998664331 2445666666665444567777666666665
Q ss_pred HH-----HHHHhcCCCeEEecC
Q psy12977 208 AK-----WCRRKLKRRVQINVG 224 (226)
Q Consensus 208 ~~-----~~~~~~~~p~~i~~~ 224 (226)
.+ ...+.......+.+.
T Consensus 294 ~~~~~eri~SRL~~~~~~i~~~ 315 (329)
T PRK06835 294 LKTYSERISSRLLGNFTLLKFY 315 (329)
T ss_pred HHHHhHHHHHHHHcCCEEEEec
Confidence 33 445555555555543
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.00058 Score=63.39 Aligned_cols=127 Identities=20% Similarity=0.121 Sum_probs=72.7
Q ss_pred cCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 34 KHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
..+++-|..+. ....++-.+++|++|+|||... -.++..+... .....+++++||..-+.++.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~-------g~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVT-------GLTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhc-------CCcc
Confidence 35677776664 4455678999999999999754 3334444322 11146888899987776544321 2111
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC---CCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD---PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~---~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
.|-.+++...... ...-.....+++|+||++++... .+..+++.+
T Consensus 393 -------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~-------~~~~Ll~~~ 440 (720)
T TIGR01448 393 -------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTW-------LALSLLAAL 440 (720)
T ss_pred -------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCHH-------HHHHHHHhC
Confidence 1111221110000 00011345789999999976332 445566666
Q ss_pred CCCCceEEEEeee
Q psy12977 190 SGPNLKRGMFSAT 202 (226)
Q Consensus 190 ~~~~~q~v~~SAT 202 (226)
+...+++++.-.
T Consensus 441 -~~~~rlilvGD~ 452 (720)
T TIGR01448 441 -PDHARLLLVGDT 452 (720)
T ss_pred -CCCCEEEEECcc
Confidence 467889887665
No 188
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00019 Score=66.21 Aligned_cols=125 Identities=26% Similarity=0.171 Sum_probs=90.7
Q ss_pred cccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecc
Q psy12977 39 HFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKI 118 (226)
Q Consensus 39 ~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 118 (226)
+|......+. ..-+....||-|||+...+|+.-... .|..+.+++-+-.||..-.+++..+.+.+|..+.....+
T Consensus 84 VQliG~i~lh-~g~iaEM~TGEGKTL~atlp~ylnaL----~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 84 VQLLGGIVLH-LGDIAEMRTGEGKTLVATLPAYLNAL----AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred HHHhhhhhhc-CCceeeeecCCchHHHHHHHHHHHhc----CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 5555543322 33478999999999999888765433 255789999999999999999999999999999887776
Q ss_pred hhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC-----CCCCCCCccEEEEccccccc
Q psy12977 119 QQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP-----PALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 119 ~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~-----~~~~~~~~~~lViDE~h~l~ 171 (226)
....++ .....|||..+|...+-..+.+++ .........+-|+||+|.++
T Consensus 159 m~~~ek---~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 159 MSPEEK---RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CChHHH---HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 644433 345889999999877643222211 22234467899999999775
No 189
>KOG1002|consensus
Probab=97.62 E-value=0.0003 Score=61.02 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=83.6
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCC
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQK 132 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (226)
++...-|.|||.-.+.-++.... +...++++|+.+| .|+.+++.+.... ..++-...|.. .........+
T Consensus 208 iLADEMGMGKTIQtIaLllae~~-----ra~tLVvaP~VAl-mQW~nEI~~~T~g-slkv~~YhG~~---R~~nikel~~ 277 (791)
T KOG1002|consen 208 ILADEMGMGKTIQTIALLLAEVD-----RAPTLVVAPTVAL-MQWKNEIERHTSG-SLKVYIYHGAK---RDKNIKELMN 277 (791)
T ss_pred eehhhhccchHHHHHHHHHhccc-----cCCeeEEccHHHH-HHHHHHHHHhccC-ceEEEEEeccc---ccCCHHHhhc
Confidence 67788999999876555555443 3358999999988 5788888888762 23333333322 1222223467
Q ss_pred CCEEEECchHHHHhHhcCCCC-----------CCCCC--ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEE
Q psy12977 133 FDVLITTPNKLVYLLQMDPPA-----------LNLAN--VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMF 199 (226)
Q Consensus 133 ~~IiV~Tp~~l~~~~~~~~~~-----------~~~~~--~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~ 199 (226)
.|++.+|...+.+-++..... ..+.+ +--+|+||||.+-+... +....+..+. ......+
T Consensus 278 YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s-nTArAV~~L~------tt~rw~L 350 (791)
T KOG1002|consen 278 YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS-NTARAVFALE------TTYRWCL 350 (791)
T ss_pred CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc-cHHHHHHhhH------hhhhhhc
Confidence 899999999888777541111 11233 34799999999876532 3444443332 3345567
Q ss_pred eeeCc
Q psy12977 200 SATHT 204 (226)
Q Consensus 200 SAT~~ 204 (226)
|.|+=
T Consensus 351 SGTPL 355 (791)
T KOG1002|consen 351 SGTPL 355 (791)
T ss_pred cCCcc
Confidence 88844
No 190
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.61 E-value=0.00061 Score=54.67 Aligned_cols=46 Identities=4% Similarity=0.025 Sum_probs=27.9
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcCCC-CceEEEEeeeCchh
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP-NLKRGMFSATHTED 206 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~-~~q~v~~SAT~~~~ 206 (226)
.+++++||+|.+.... .....+..++...... +.++++.|...|.+
T Consensus 98 ~dlliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 4799999999886442 3445555555554222 34677755555544
No 191
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.60 E-value=0.0004 Score=61.56 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=81.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+.+++.-|-|.|||......++..+.-....+..+++.+++++-|..+++.++.+................ .
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~~--------~ 94 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKII--------K 94 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhhh--------h
Confidence 45788889999999765444333332234456789999999999999999999887663322111100000 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEE
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMF 199 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~ 199 (226)
...-.|.....+.....+.......+=.+.+++|+||+|...+. .....+..-+... ++++++..
T Consensus 95 ~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~---~~~~~l~~g~~~r--~~pl~~~I 159 (477)
T PF03354_consen 95 SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD---ELYDALESGMGAR--PNPLIIII 159 (477)
T ss_pred hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH---HHHHHHHhhhccC--CCceEEEE
Confidence 01112333222333333333334555556789999999988664 4666666666554 45565554
No 192
>PRK05642 DNA replication initiation factor; Validated
Probab=97.60 E-value=0.0005 Score=55.11 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=30.4
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
+.+++++|++|.+.... .+...+..++..+...+.++++.|-+.|++
T Consensus 97 ~~d~LiiDDi~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~ 143 (234)
T PRK05642 97 QYELVCLDDLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPRE 143 (234)
T ss_pred hCCEEEEechhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence 55799999999775442 345667777776644556666655445543
No 193
>KOG0391|consensus
Probab=97.59 E-value=0.00027 Score=66.76 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhccccCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
+++-.|+-++.-|+..+-. +...+-|-|+...-|-|||.-.+.-+.+..-+..+.|+..| ++||- ....|.=
T Consensus 611 LLrGqLReYQkiGLdWLat------LYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLI-VVpTs-viLnWEM 682 (1958)
T KOG0391|consen 611 LLRGQLREYQKIGLDWLAT------LYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLI-VVPTS-VILNWEM 682 (1958)
T ss_pred HHHHHHHHHHHhhHHHHHH------HHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceE-Eeech-hhhhhhH
Confidence 4444454455444443311 12234466889999999998654433344444455566655 55764 3445666
Q ss_pred HHHHHhhcCCCeEEEEecchhhh-hhh-CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 100 ETVRLSEGLGLRAHVIGKIQQAA-EKF-GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
++++++. +.++....|..... .+. .+...+..|+-|++...+.+.... +.-.++.|+|+||+|++-..
T Consensus 683 ElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A----FkrkrWqyLvLDEaqnIKnf---- 752 (1958)
T KOG0391|consen 683 ELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA----FKRKRWQYLVLDEAQNIKNF---- 752 (1958)
T ss_pred HHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH----HHhhccceeehhhhhhhcch----
Confidence 7888887 56666555553322 222 233445568888887776665432 22457889999999998665
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
-...+..++. + ...+.++++.|+=
T Consensus 753 ksqrWQAlln-f--nsqrRLLLtgTPL 776 (1958)
T KOG0391|consen 753 KSQRWQALLN-F--NSQRRLLLTGTPL 776 (1958)
T ss_pred hHHHHHHHhc-c--chhheeeecCCch
Confidence 2334444442 2 3456677788843
No 194
>PRK06921 hypothetical protein; Provisional
Probab=97.57 E-value=0.0012 Score=54.01 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=27.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
.+.++++.|++|+|||... ..+...+.... +..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~--g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK--GVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc--CceEEEEE-HHHHHHH
Confidence 3578999999999999754 34444443211 34566654 4444444
No 195
>PRK04296 thymidine kinase; Provisional
Probab=97.56 E-value=0.00032 Score=54.40 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
|.-.++.||+|+|||...+--+..... .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~----~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE----RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH----cCCeEEEEec
Confidence 345689999999999765443333322 2457787755
No 196
>KOG2340|consensus
Probab=97.56 E-value=8.1e-05 Score=64.83 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=108.6
Q ss_pred ccCCCCcccccc-cCCCCCeEEEE-CCCCchH--hHHHHHHHHHHhcC---------------------------CCCCC
Q psy12977 33 FKHFEPHFTITY-LSPLGRQIFAC-APTGSGK--TAAFLIPIIHSLRG---------------------------PKNLG 81 (226)
Q Consensus 33 ~~~~~~~Q~~~~-~~~~~~~~li~-apTGsGK--T~~~~~~~~~~~~~---------------------------~~~~~ 81 (226)
-..+++.|...+ ...+-+|++.. ..-+.|+ +-.|++-+++.+.+ +.-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 346777786665 44555776532 2223444 23355555555410 11125
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhcCCC-eEEEE---------ecchhhh-------hhhC------------------
Q psy12977 82 FRAVIVCPTRELAKQTYNETVRLSEGLGL-RAHVI---------GKIQQAA-------EKFG------------------ 126 (226)
Q Consensus 82 ~~~iil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~---------~~~~~~~-------~~~~------------------ 126 (226)
|+++|+||+|+-|-.+.+.+..+...... +.... .+.+... ..+.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999988888332211 11111 1100000 0000
Q ss_pred ------CCcCCCCCEEEECchHHHHhHhc---C-CCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC---C--
Q psy12977 127 ------PRSAQKFDVLITTPNKLVYLLQM---D-PPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS---G-- 191 (226)
Q Consensus 127 ------~~~~~~~~IiV~Tp~~l~~~~~~---~-~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~---~-- 191 (226)
.....++||+||+|--|.-.+.. . ...--++++.++|||.+|.++.. .|..+.-++..+. .
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q----NwEhl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ----NWEHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh----hHHHHHHHHHHhhcCcccc
Confidence 00046799999999887766652 1 12233888999999999988765 6777777766652 1
Q ss_pred ------------------CCceEEEEeeeCchhHHHHHHHhcCC
Q psy12977 192 ------------------PNLKRGMFSATHTEDVAKWCRRKLKR 217 (226)
Q Consensus 192 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~ 217 (226)
--.|+++||+--.+....+.+.|+++
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 12577888888777888888777654
No 197
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.0037 Score=54.54 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHh-cCCCCCCceEEEE-cccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSL-RGPKNLGFRAVIV-CPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~-~~~~~~~~~~iil-~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
..++.+.+.||||+|||.....-+.... .. .+.++.++ +.+...+. .++++.+....+..+
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~------------ 281 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGA--VEQLKTYAKIMGIPV------------ 281 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHH--HHHHHHHHHHhCCce------------
Confidence 3467889999999999976554333332 11 12344444 33322111 234444443334322
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..+.++..+...+.. +.+.++++||.+-...... .....+..++.....+....+++|||..
T Consensus 282 ----------~~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~--~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 ----------EVVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK--RLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred ----------EccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH--HHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 112344455555543 3467899999986543221 3445566665522123344667788865
Q ss_pred -hhHHHHHHHhcC
Q psy12977 205 -EDVAKWCRRKLK 216 (226)
Q Consensus 205 -~~~~~~~~~~~~ 216 (226)
.++.+.+..|-.
T Consensus 344 ~~~l~~~~~~f~~ 356 (424)
T PRK05703 344 YEDLKDIYKHFSR 356 (424)
T ss_pred HHHHHHHHHHhCC
Confidence 466666666553
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00069 Score=48.53 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
+..+++.||+|+|||.....- +..+... +..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCCC---CCCEEEECCEEccc
Confidence 567899999999999865333 3333221 12467766665433
No 199
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.52 E-value=0.0002 Score=54.98 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=32.4
Q ss_pred EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
+++.||||+|||...+--+...+.. +.+++|++ +.+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEE-CCCCHHHHHHHHHHc
Confidence 6899999999998655444554432 45677775 445667766666555
No 200
>PRK12377 putative replication protein; Provisional
Probab=97.51 E-value=0.0018 Score=52.38 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=62.9
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
..++++.||+|+|||... ..+...+... +..+++ .+..++..++...+.. + .
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~---g~~v~~-i~~~~l~~~l~~~~~~-----~-------------~----- 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK---GRSVIV-VTVPDVMSRLHESYDN-----G-------------Q----- 152 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc---CCCeEE-EEHHHHHHHHHHHHhc-----c-------------c-----
Confidence 367999999999999744 3444444322 334444 4555666655442210 0 0
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA 208 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~ 208 (226)
+ ....+.. +.++++||+||++...... .....+..++........++++.|.--++++.
T Consensus 153 ----------~---~~~~l~~------l~~~dLLiIDDlg~~~~s~--~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 153 ----------S---GEKFLQE------LCKVDLLVLDEIGIQRETK--NEQVVLNQIIDRRTASMRSVGMLTNLNHEAMS 211 (248)
T ss_pred ----------h---HHHHHHH------hcCCCEEEEcCCCCCCCCH--HHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHH
Confidence 0 0112222 5678999999997543331 24446666666654556778887775555443
No 201
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0031 Score=54.09 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceE-EEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRA-VIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~-iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.+.+.+.||+|+|||.....-+...... +.++ ++-+.+...+ ..++++.+....+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~----GkkVglI~aDt~Ria--AvEQLk~yae~lgipv--------------- 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIG--TVQQLQDYVKTIGFEV--------------- 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEEecCCcchH--HHHHHHHHhhhcCCcE---------------
Confidence 3678999999999998755444333221 2234 4444333211 1222333333223221
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee-Cchh
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT-HTED 206 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT-~~~~ 206 (226)
+.+.+|..+.+.+..... ..+.++++||-+=+..... .....+..+++.. .+..-++.+||| -+++
T Consensus 300 -------~v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~--~lm~EL~~~lk~~-~PdevlLVLsATtk~~d 366 (436)
T PRK11889 300 -------IAVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRAS--ETVEEMIETMGQV-EPDYICLTLSASMKSKD 366 (436)
T ss_pred -------EecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCH--HHHHHHHHHHhhc-CCCeEEEEECCccChHH
Confidence 223466676665543111 1257899999987654331 3556666666555 233334558887 4467
Q ss_pred HHHHHHHhcC
Q psy12977 207 VAKWCRRKLK 216 (226)
Q Consensus 207 ~~~~~~~~~~ 216 (226)
+.+.+++|-.
T Consensus 367 ~~~i~~~F~~ 376 (436)
T PRK11889 367 MIEIITNFKD 376 (436)
T ss_pred HHHHHHHhcC
Confidence 7788877654
No 202
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.49 E-value=0.0014 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.2
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
.+.++++.||+|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999976543
No 203
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.49 E-value=0.0016 Score=53.04 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.8
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
...++++.||+|+|||...-.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHH
Confidence 346899999999999976533
No 204
>KOG0991|consensus
Probab=97.48 E-value=0.0003 Score=55.65 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 152 PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 152 ~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..++.-+-+.+|+||||.|.+. ..+.+.+.++-. ++.+++.+...+..
T Consensus 107 v~lp~grhKIiILDEADSMT~g----AQQAlRRtMEiy-S~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 107 VTLPPGRHKIIILDEADSMTAG----AQQALRRTMEIY-SNTTRFALACNQSE 154 (333)
T ss_pred ccCCCCceeEEEeeccchhhhH----HHHHHHHHHHHH-cccchhhhhhcchh
Confidence 3444567789999999999764 777888888777 55666665555533
No 205
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.0031 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.7
Q ss_pred CCCeEEEECCCCchHhHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~ 69 (226)
.+.++++.||||+|||..+-..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4677999999999999865443
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.46 E-value=0.0018 Score=47.98 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCccEEEEcccccccccCc-------cchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 156 LANVEWLIVDESDKLFEAGV-------RGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~-------~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..+.+++|+||++.+.+... ......+..+.......+..+++.+-+..
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 34677999999998754311 12345566666555334566666555543
No 207
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0036 Score=53.88 Aligned_cols=65 Identities=11% Similarity=0.175 Sum_probs=45.0
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH---HHHHHhcCCCeEEecC
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA---KWCRRKLKRRVQINVG 224 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~---~~~~~~~~~p~~i~~~ 224 (226)
+++++++|+++.+.... .....+..++..+...+.|+++.|...|.++. +-+...+.-.+.+++.
T Consensus 175 ~~dlllIDDiq~l~gk~--~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~ 242 (408)
T COG0593 175 SLDLLLIDDIQFLAGKE--RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE 242 (408)
T ss_pred ccCeeeechHhHhcCCh--hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeC
Confidence 78899999999887653 45667777777775666799998888887754 3333344444555443
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.0026 Score=49.61 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=71.2
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSA 130 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (226)
-+++.||||+|||....--+.....+ ...-+++-+.+...+ ..++++.+.+.+++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~~~~~~----------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIG--AVEQLKTYAEILGVPFYVARTES----------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTH--HHHHHHHHHHHHTEEEEESSTTS-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCcc--HHHHHHHHHHHhccccchhhcch-----------
Confidence 46899999999998765444333332 222344444443322 23556666666566543322110
Q ss_pred CCCCEEEECchHHH-HhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 131 QKFDVLITTPNKLV-YLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 131 ~~~~IiV~Tp~~l~-~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
.|..+. +.+.. ...++.++++||-+-+..... .....+..+.+.. .+..-.+.+|||...+..+
T Consensus 67 --------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~~~d~--~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 --------DPAEIAREALEK----FRKKGYDLVLIDTAGRSPRDE--ELLEELKKLLEAL-NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp --------CHHHHHHHHHHH----HHHTTSSEEEEEE-SSSSTHH--HHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHH
T ss_pred --------hhHHHHHHHHHH----HhhcCCCEEEEecCCcchhhH--HHHHHHHHHhhhc-CCccceEEEecccChHHHH
Confidence 122222 22221 113467899999997654321 4667777777777 4445556678997655433
Q ss_pred HHHH
Q psy12977 210 WCRR 213 (226)
Q Consensus 210 ~~~~ 213 (226)
.+.+
T Consensus 132 ~~~~ 135 (196)
T PF00448_consen 132 QALA 135 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 209
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.44 E-value=0.0019 Score=51.42 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=25.8
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+++++||+|.+... ....+..++.........+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~----~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA----QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch----HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 3445555555442233334666666543
No 210
>PLN03025 replication factor C subunit; Provisional
Probab=97.43 E-value=0.0022 Score=53.83 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
.+.+++|+||+|.+... ....+.++++.. +..+.+++.+..
T Consensus 98 ~~~kviiiDE~d~lt~~----aq~aL~~~lE~~-~~~t~~il~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSG----AQQALRRTMEIY-SNTTRFALACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHH----HHHHHHHHHhcc-cCCceEEEEeCC
Confidence 35789999999998765 455666666654 455666664433
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.0027 Score=51.21 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
+.++++|||||++...... .-...+..++..-...+..+++.|.--++++.+.
T Consensus 160 l~~~dlLvIDDig~~~~s~--~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESR--YEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred hccCCEEEEeCCCCCCCCH--HHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 4578899999999765431 1223555566554345678888887766665443
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=97.41 E-value=0.0057 Score=49.81 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+..+.++++.||+|+|||.....-...... .+.++.++ +..++..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR----AGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEE-eHHHHHHH
Confidence 566789999999999999654433222222 13355554 43445443
No 213
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.41 E-value=0.001 Score=53.39 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
..|..+++.||+|+|||...+-.+...+.+ +.+++|++ +.+-..|+.+.+..+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 456889999999999998655545555532 55778876 4556667777666553
No 214
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.36 E-value=0.0014 Score=61.21 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCCcccccc-cCCC-CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 35 HFEPHFTITY-LSPL-GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~-~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
.+++-|..+. .+.. ++-.++.|++|+|||... -.+...+.. .+.+++.++||..-+..+.+. .+...
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~-------~g~~a 420 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEGLQAE-------SGIES 420 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHHHHhc-------cCCce
Confidence 4677776664 3333 467899999999999753 334444433 256899999998666554321 12211
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
.|-.++...+.. ....+...+++|+||+-.+... .+..+++.....
T Consensus 421 -------------------------~Ti~~~~~~~~~--~~~~~~~~~llIvDEasMv~~~-------~~~~Ll~~~~~~ 466 (744)
T TIGR02768 421 -------------------------RTLASLEYAWAN--GRDLLSDKDVLVIDEAGMVGSR-------QMARVLKEAEEA 466 (744)
T ss_pred -------------------------eeHHHHHhhhcc--CcccCCCCcEEEEECcccCCHH-------HHHHHHHHHHhc
Confidence 122222111111 2333567899999999966433 233444433245
Q ss_pred CceEEEEeee
Q psy12977 193 NLKRGMFSAT 202 (226)
Q Consensus 193 ~~q~v~~SAT 202 (226)
..+++++.=+
T Consensus 467 ~~kliLVGD~ 476 (744)
T TIGR02768 467 GAKVVLVGDP 476 (744)
T ss_pred CCEEEEECCh
Confidence 7788887643
No 215
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.36 E-value=0.00029 Score=56.72 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=60.1
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCC
Q psy12977 79 NLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLAN 158 (226)
Q Consensus 79 ~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~ 158 (226)
...|.+||++.+--.|-.+.+.++.+..........+.-.-.-.+..........+|.||||+++..++.. +.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~--~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN--GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc--CCCCccc
Confidence 34689999999988888888888877421111111111111111222222335788999999999999987 8999999
Q ss_pred ccEEEEcccc
Q psy12977 159 VEWLIVDESD 168 (226)
Q Consensus 159 ~~~lViDE~h 168 (226)
+.++|+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999865
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=0.00026 Score=54.38 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=28.1
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
++.+++++++.||+|+|||......+...+.. +..+++ .+..+|..++
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEE-EEHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeE-eecCceeccc
Confidence 45678899999999999997654433344432 334555 4555666553
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=97.36 E-value=0.0043 Score=52.35 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=72.4
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc---HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT---RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
.-+++.|++|+|||....-.+ ..+.. .+.+++++... ..-.+|+ +.+....+..+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~---~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~------- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK---NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGA------- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH---cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCC-------
Confidence 457899999999998654333 23322 13355555432 2333443 334443454432111110
Q ss_pred CCcCCCCCEEEECchH-HHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 127 PRSAQKFDVLITTPNK-LVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~-l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
.|.. +.+.+.. ....+.+++++|.+.++.... .....+..+.+.. ++..-++.++|+...
T Consensus 206 ------------dp~~v~~~ai~~----~~~~~~DvVLIDTaGr~~~~~--~lm~eL~~i~~~~-~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 ------------DPAAVAYDAIEH----AKARGIDVVLIDTAGRMHTDA--NLMDELKKIVRVT-KPDLVIFVGDALAGN 266 (336)
T ss_pred ------------CHHHHHHHHHHH----HHhCCCCEEEEECCCccCCcH--HHHHHHHHHHHhh-CCceEEEeeccccch
Confidence 1222 1222221 012356799999999875332 5777888887766 566667888998776
Q ss_pred hHHHHHHHh
Q psy12977 206 DVAKWCRRK 214 (226)
Q Consensus 206 ~~~~~~~~~ 214 (226)
+..+.++.+
T Consensus 267 d~~~~a~~f 275 (336)
T PRK14974 267 DAVEQAREF 275 (336)
T ss_pred hHHHHHHHH
Confidence 666555554
No 218
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.34 E-value=0.0013 Score=62.57 Aligned_cols=123 Identities=16% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCCCcccccc-cCCCCC-eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 35 HFEPHFTITY-LSPLGR-QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~-~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
.+++-|..+. .+..++ -++++|+.|+|||.. +-.+...+.. .+.+++.++||-.-+....+ ..+...
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L~e-------~tGi~a 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENLEG-------GSGIAS 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHHhh-------ccCcch
Confidence 5788887775 445544 578999999999985 3344444443 25689999999866654432 112210
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
.|-.++..-+.. +...+...++|||||+-.+... .+..+++.....
T Consensus 415 -------------------------~TI~sll~~~~~--~~~~l~~~~vlIVDEASMv~~~-------~m~~LL~~a~~~ 460 (988)
T PRK13889 415 -------------------------RTIASLEHGWGQ--GRDLLTSRDVLVIDEAGMVGTR-------QLERVLSHAADA 460 (988)
T ss_pred -------------------------hhHHHHHhhhcc--cccccccCcEEEEECcccCCHH-------HHHHHHHhhhhC
Confidence 122233221111 2334667789999999965333 444555544456
Q ss_pred CceEEEEeee
Q psy12977 193 NLKRGMFSAT 202 (226)
Q Consensus 193 ~~q~v~~SAT 202 (226)
.+++|++.=+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 7889888766
No 219
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.34 E-value=0.0046 Score=51.06 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.++++.||+|+|||..+
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3568999999999999765
No 220
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0021 Score=59.30 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+.+++||||+|.|... ....+.++++.- ++.+.+++.|
T Consensus 118 gr~KVIIIDEah~LT~~----A~NALLKtLEEP-P~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH----AFNAMLKTLEEP-PPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH----HHHHHHHHHHhc-CCCeEEEEEE
Confidence 46789999999988765 344455566554 3455666543
No 221
>KOG1131|consensus
Probab=97.34 E-value=0.0014 Score=57.37 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
-.+.+.++..|+|+|||.+.+..+...-...+....+.||-.-|..=.+....+++.+..+
T Consensus 33 DakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l~~y 93 (755)
T KOG1131|consen 33 DAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRLMDY 93 (755)
T ss_pred ccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHHHHH
Confidence 4557789999999999987654433332222323457777776665555555555555433
No 222
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.33 E-value=0.0026 Score=54.80 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEE
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIV 87 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil 87 (226)
.++++.||+|+|||...-. ++..+.... .+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEELEEIA-VKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhc-CCcEEEEE
Confidence 6799999999999986543 344443221 23345555
No 223
>KOG0921|consensus
Probab=97.31 E-value=0.0011 Score=61.21 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=92.1
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCc-eEEEEcccHHHHHHHHHH-HHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGF-RAVIVCPTRELAKQTYNE-TVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~-~~iil~Pt~~L~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
+.-+++.+.||+|||.-+.--+++.+..++.... -+.+--|++..+.-+.+. +++-++..+..+..-..- .+
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf------~S 466 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF------DS 466 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc------cc
Confidence 4557899999999999988888888866555433 345555666655555443 333333333332221110 00
Q ss_pred CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 127 PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
.....---|+.||-+-+.+.+... +..+.++++||.|..--.. .|...+.+-+... .+...++++|||..
T Consensus 467 a~prpyg~i~fctvgvllr~~e~g-----lrg~sh~i~deiherdv~~--dfll~~lr~m~~t-y~dl~v~lmsatId-- 536 (1282)
T KOG0921|consen 467 ATPRPYGSIMFCTVGVLLRMMENG-----LRGISHVIIDEIHERDVDT--DFVLIVLREMIST-YRDLRVVLMSATID-- 536 (1282)
T ss_pred cccccccceeeeccchhhhhhhhc-----ccccccccchhhhhhccch--HHHHHHHHhhhcc-chhhhhhhhhcccc--
Confidence 001111259999999999988763 5578899999999553221 3444444444333 34566677777765
Q ss_pred HHHHHHHhcCCCeEEec
Q psy12977 207 VAKWCRRKLKRRVQINV 223 (226)
Q Consensus 207 ~~~~~~~~~~~p~~i~~ 223 (226)
.+++..|+.+-..+++
T Consensus 537 -Td~f~~~f~~~p~~~~ 552 (1282)
T KOG0921|consen 537 -TDLFTNFFSSIPDVTV 552 (1282)
T ss_pred -hhhhhhhhccccceee
Confidence 3334445544444333
No 224
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0018 Score=56.92 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=16.0
Q ss_pred CeEEEECCCCchHhHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~ 69 (226)
+.++++||+|+|||..+..-
T Consensus 41 ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 44799999999999876443
No 225
>PF05729 NACHT: NACHT domain
Probab=97.30 E-value=0.0057 Score=45.54 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=33.7
Q ss_pred EEEEcccccccccCcc----chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 161 WLIVDESDKLFEAGVR----GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 161 ~lViDE~h~l~~~~~~----~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++|+|-+|.+.+.... .....+..++..-..++.++++.|.+- ...+ +.+.+.....++++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~--~~~~-~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR--AFPD-LRRRLKQAQILELE 148 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC--hHHH-HHHhcCCCcEEEEC
Confidence 5999999998774311 233445555555224677777765542 2222 44555555444443
No 226
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.29 E-value=0.00044 Score=64.36 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=54.8
Q ss_pred ccCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 33 FKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 33 ~~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
+..+|+.|..+... ...+++|.|.+|||||.....-+...+........++++++-|+.-|..+.+.+..+.
T Consensus 7 l~~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 7 LDSLNDKQREAVAA-PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HHhcCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 34578888776543 3468899999999999887666666664333344589999999999999999887775
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.27 E-value=0.00055 Score=63.67 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=55.1
Q ss_pred ccCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 33 FKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 33 ~~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
+..+++.|..+... .+.+++|.|.+|||||.+...-+...+........++++++.|+.-|..+.+.+.++.
T Consensus 2 l~~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 2 LDGLNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccccCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 34678888666543 3468999999999999987766666665333345589999999999999999887775
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.24 E-value=0.0064 Score=45.88 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
....+++|+||+|.|... ....+.++++.- +.++.++++|....
T Consensus 100 ~~~~KviiI~~ad~l~~~----a~NaLLK~LEep-p~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEE----AQNALLKTLEEP-PENTYFILITNNPS 143 (162)
T ss_dssp TSSSEEEEEETGGGS-HH----HHHHHHHHHHST-TTTEEEEEEES-GG
T ss_pred cCCceEEEeehHhhhhHH----HHHHHHHHhcCC-CCCEEEEEEECChH
Confidence 357899999999998776 667777777775 56777777655443
No 229
>KOG0734|consensus
Probab=97.23 E-value=0.0018 Score=57.02 Aligned_cols=67 Identities=16% Similarity=0.035 Sum_probs=42.6
Q ss_pred CccEEEEcccccccccCcc----chHHHHHHHHHhc--CCCCceEEEEeee-CchhHHHHHHHhcCCCeEEecC
Q psy12977 158 NVEWLIVDESDKLFEAGVR----GFRDQLAVIYAAC--SGPNLKRGMFSAT-HTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~----~~~~~i~~i~~~~--~~~~~q~v~~SAT-~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
.-..+.|||.|.+.+.... ...+.+.+++-.+ ...+--++.+.|| +|+.+.+.+-+=-+.-.+|.|.
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp 469 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVP 469 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecC
Confidence 4568899999988754311 2233455555444 2455678888999 7777777776655555566553
No 230
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0056 Score=54.19 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++||||+|.+... ....+.+.++.- ++.+.+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEeP-p~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEP-APHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCC-CCCeEEEEEe
Confidence 357889999999988664 334455555543 4455666543
No 231
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.21 E-value=0.00077 Score=56.60 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.8
Q ss_pred EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
+.+.|+-|||||+.++.+.+..... .....+.|+.-|+..+.+.+
T Consensus 248 V~L~G~AGtGKTlLALaAgleqv~e-~~~y~KiiVtRp~vpvG~dI 292 (436)
T COG1875 248 VSLGGKAGTGKTLLALAAGLEQVLE-RKRYRKIIVTRPTVPVGEDI 292 (436)
T ss_pred EEeeccCCccHhHHHHHHHHHHHHH-HhhhceEEEecCCcCccccc
Confidence 6789999999998888777766643 23355889988988776543
No 232
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.004 Score=55.57 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=27.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+.+++||||+|.+... ....+.++++.- ++.+.+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~----a~naLLk~LEep-p~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH----SFNALLKTLEEP-PSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH----HHHHHHHHHhcc-CCCeEEEEEE
Confidence 46789999999988765 344555666664 4566777654
No 233
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.20 E-value=0.00022 Score=54.48 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=53.0
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCC
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQK 132 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (226)
++.|+-|-|||.+.-+.+...+... ..++++.+|+.+-++..++.+..-.+..+.+....... .........+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI----GQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc----cccccccccc
Confidence 5789999999987655544433321 24799999999998888886655555444433100000 0000011224
Q ss_pred CCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 133 FDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 133 ~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..|-...|+.+... ....+++|||||=.+.-. .+.+++ .....++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~---------~~~~DlliVDEAAaIp~p-------~L~~ll-----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE---------KPQADLLIVDEAAAIPLP-------LLKQLL-----RRFPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT-------------SCEEECTGGGS-HH-------HHHHHH-----CCSSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC---------cCCCCEEEEechhcCCHH-------HHHHHH-----hhCCEEEEEeecc
Confidence 45666666654322 123489999999866332 444444 2334666777854
No 234
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0038 Score=58.72 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=29.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+.+++||||+|.|... ....+.++++.. +..+.+|+.+ |-++
T Consensus 118 ~~~~KV~IIDEad~lt~~----a~NaLLK~LEEp-P~~~~fIl~t-t~~~ 161 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ----GFNALLKIVEEP-PEHLKFIFAT-TEPD 161 (824)
T ss_pred cCCceEEEEechhhcCHH----HHHHHHHHHhCC-CCCeEEEEEe-CChh
Confidence 356789999999999765 445566666665 4556666654 4333
No 235
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.17 E-value=0.009 Score=56.09 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+.+||+||+|.+... ....+..+++.......++++...+
T Consensus 868 r~v~IIILDEID~L~kK----~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK----TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCcc----HHHHHHHHHHHhhccCCeEEEEEec
Confidence 45679999999998764 2234444554432334555554444
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0041 Score=56.65 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=26.1
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+.+++||||+|.+... ....+.++++.- ++...+++.+
T Consensus 117 gk~KV~IIDEVh~LS~~----A~NALLKtLEEP-P~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH----SFNALLKTLEEP-PEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH----HHHHHHHHHhcC-CCCcEEEEEE
Confidence 45789999999988655 445566666654 4456666643
No 237
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.15 E-value=0.0049 Score=53.26 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=77.5
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH-HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE-LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
-.++.|..|||||.....-++..+... ..+.+++++-++.. +..-+...++.....++.....-... ....-..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~----~~~~i~~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSK----SSMEIKI 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecC----CccEEEe
Confidence 457899999999998877766666543 12458898988887 77777888887777666532211111 0000001
Q ss_pred CC-CCCEEEECc-hHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 130 AQ-KFDVLITTP-NKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 130 ~~-~~~IiV~Tp-~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
.. +..|++..- +...+ ......++++.+||+..+... ....+...++. + .....+++|.+++.
T Consensus 78 ~~~g~~i~f~g~~d~~~~-------ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~-~-~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-------LKSGAGIAIIWFEEASQLTFE----DIKELIPRLRE-T-GGKKFIIFSSNPES 142 (396)
T ss_pred cCCCeEEEeecccCChhH-------hhCcceeeeehhhhhhhcCHH----HHHHHHHHhhc-c-CCccEEEEEcCcCC
Confidence 12 344555443 21111 111334689999999988543 44444333322 1 12224667777654
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0032 Score=57.20 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=27.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+.+++||||+|.|... ....+.++++.- +.++.+++.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~----AaNALLKTLEEP-P~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH----AFNAMLKTLEEP-PEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH----HHHHHHHhhccC-CCCceEEEEeCC
Confidence 346789999999998765 333444455543 456777776543
No 239
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.14 E-value=0.00048 Score=54.53 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC-CCeEEEEe--cchhh--
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL-GLRAHVIG--KIQQA-- 121 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~--~~~~~-- 121 (226)
.+|+|.+.+.-.|.|||.+ +.|++.....+.. .-+.+++| ++|.+|..+.+....... +-++..+. .....
T Consensus 39 ~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~--~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~ 114 (229)
T PF12340_consen 39 PSGKNSVMQLNMGEGKTSV-IVPMLALALADGS--RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTP 114 (229)
T ss_pred CCCCCeEeeecccCCccch-HHHHHHHHHcCCC--cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCH
Confidence 3578999999999999975 4666666554322 25555555 579999998887775443 33322221 11100
Q ss_pred -----hhhhCCCcCCCCCEEEECchHHHHhHhcCC-----CC-----------CCCCCccEEEEccccccccc
Q psy12977 122 -----AEKFGPRSAQKFDVLITTPNKLVYLLQMDP-----PA-----------LNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 122 -----~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~-----~~-----------~~~~~~~~lViDE~h~l~~~ 173 (226)
.............|+++||+.+.++.-..- +. ..+.+...=|+||+|..++.
T Consensus 115 ~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 115 ETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 010001122445699999999987542210 11 11334445699999987754
No 240
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.14 E-value=0.00089 Score=57.28 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
..+.++.+.|+-|+|||..+ -.+.+.++. .+..+++++||-.=|..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~---~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLI-KAIIDYLRS---RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhHHH-HHHHHHhcc---ccceEEEecchHHHHHhc
Confidence 46688999999999999754 333444433 345788888887655544
No 241
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.008 Score=53.53 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.4
Q ss_pred CeEEEECCCCchHhHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~ 69 (226)
+.++++||+|+|||..+..-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999876443
No 242
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=97.11 E-value=0.01 Score=54.04 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC--------eEEEEecch
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL--------RAHVIGKIQ 119 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~--------~~~~~~~~~ 119 (226)
..+-.++.+|-|.|||++..+.+...+.. .+.+++|.+|...-+.++++.++...+..+. .+....++.
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~ 262 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTD 262 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCe
Confidence 34667899999999999866554444321 2568999999999999999988888774431 111122111
Q ss_pred hhhh-hhCCCcC-CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEE
Q psy12977 120 QAAE-KFGPRSA-QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRG 197 (226)
Q Consensus 120 ~~~~-~~~~~~~-~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v 197 (226)
+... ....... +++.|..++.. +....-.+.+++|+|||..+... ....+.-++.. ...+.+
T Consensus 263 E~I~f~~p~gak~G~sti~F~Ars---------~~s~RG~~~DLLIVDEAAfI~~~----~l~aIlP~l~~---~~~k~I 326 (752)
T PHA03333 263 ENLEYISDPAAKEGKTTAHFLASS---------PNAARGQNPDLVIVDEAAFVNPG----ALLSVLPLMAV---KGTKQI 326 (752)
T ss_pred eEEEEecCcccccCcceeEEeccc---------CCCcCCCCCCEEEEECcccCCHH----HHHHHHHHHcc---CCCceE
Confidence 1000 0000001 11233333222 12223335689999999987664 44445444432 466777
Q ss_pred EEeeeC
Q psy12977 198 MFSATH 203 (226)
Q Consensus 198 ~~SAT~ 203 (226)
++|.+.
T Consensus 327 iISS~~ 332 (752)
T PHA03333 327 HISSPV 332 (752)
T ss_pred EEeCCC
Confidence 778885
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.026 Score=49.43 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=68.7
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc-ccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC-PTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
..+++.|++|+|||....--+. .+... +.++.++. .+..- ...++++.+....+..+......
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~~---g~kV~lV~~D~~R~--aa~eQL~~la~~~gvp~~~~~~~---------- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKKK---GLKVGLVAADTYRP--AAYDQLKQLAEKIGVPFYGDPDN---------- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHHc---CCeEEEecCCCCCH--HHHHHHHHHHHHcCCcEEecCCc----------
Confidence 4688999999999987544333 33321 23444443 33211 12344445544444432111000
Q ss_pred cCCCCCEEEECchH-HHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 129 SAQKFDVLITTPNK-LVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~-l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
..|.. +.+.+.. ....+++|+|.+-+..... .....+..+.... .+..-++.++|+...+.
T Consensus 160 ---------~d~~~i~~~al~~------~~~~DvVIIDTAGr~~~d~--~lm~El~~l~~~~-~pdevlLVvda~~gq~a 221 (437)
T PRK00771 160 ---------KDAVEIAKEGLEK------FKKADVIIVDTAGRHALEE--DLIEEMKEIKEAV-KPDEVLLVIDATIGQQA 221 (437)
T ss_pred ---------cCHHHHHHHHHHH------hhcCCEEEEECCCcccchH--HHHHHHHHHHHHh-cccceeEEEeccccHHH
Confidence 01112 2233333 1223899999995443221 3666666766655 45556677788877666
Q ss_pred HHHHHHhc
Q psy12977 208 AKWCRRKL 215 (226)
Q Consensus 208 ~~~~~~~~ 215 (226)
.+.++.+.
T Consensus 222 v~~a~~F~ 229 (437)
T PRK00771 222 KNQAKAFH 229 (437)
T ss_pred HHHHHHHH
Confidence 66666643
No 244
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.0031 Score=56.13 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=81.1
Q ss_pred EECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh----------hcC--CCeEEEEecchhh
Q psy12977 54 ACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS----------EGL--GLRAHVIGKIQQA 121 (226)
Q Consensus 54 i~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~----------~~~--~~~~~~~~~~~~~ 121 (226)
..+.||||||+..+.-+++....+ ....++.+....+.+.....+..-. ... .+.+..+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn----- 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN----- 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec-----
Confidence 357899999998766666666542 3467888877666665544322111 000 11111111
Q ss_pred hhhhCCCcCCCCCEEEECchHHHHhHhcC-CCCCCCCCc---c-EEEEcccccccccC----------ccchHHHHHHHH
Q psy12977 122 AEKFGPRSAQKFDVLITTPNKLVYLLQMD-PPALNLANV---E-WLIVDESDKLFEAG----------VRGFRDQLAVIY 186 (226)
Q Consensus 122 ~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~-~~~~~~~~~---~-~lViDE~h~l~~~~----------~~~~~~~i~~i~ 186 (226)
.++ ....+.+|..+|.+.+...+.+- ...+.+.++ . .++-||+|++.... .+.+...+...+
T Consensus 74 --~fs-ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 74 --NFS-EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred --ccC-ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 111 14466789999999999877542 123333333 3 56679999986431 112222222222
Q ss_pred HhcCCCCceEEEEeeeCchhHHHHHHHh
Q psy12977 187 AACSGPNLKRGMFSATHTEDVAKWCRRK 214 (226)
Q Consensus 187 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~ 214 (226)
+. ++..-++.+|||.|++ +....+|
T Consensus 151 ~~--nkd~~~lef~at~~k~-k~v~~ky 175 (812)
T COG3421 151 EQ--NKDNLLLEFSATIPKE-KSVEDKY 175 (812)
T ss_pred hc--CCCceeehhhhcCCcc-ccHHHHh
Confidence 22 3555667899998833 3334344
No 245
>PRK04328 hypothetical protein; Provisional
Probab=97.08 E-value=0.0066 Score=49.14 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
..|..+++.|++|+|||...+-.+...+.+ +.+++|+. +.+-..++.+.++.+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 356789999999999997655545555543 44567765 5455556666666553
No 246
>PF13173 AAA_14: AAA domain
Probab=97.08 E-value=0.0091 Score=43.03 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=28.1
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.-.++++||+|.+. ++...++.+...- ++.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~-----~~~~~lk~l~d~~--~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP-----DWEDALKFLVDNG--PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhc-----cHHHHHHHHHHhc--cCceEEEEccch
Confidence 45689999999873 4677777777654 567888765553
No 247
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.08 E-value=0.0021 Score=54.78 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.5
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.||+|+|||....
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 248
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.07 E-value=0.0012 Score=60.45 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCCCcccccc-cCCC-CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 35 HFEPHFTITY-LSPL-GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~-~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
.+++-|..+. ..+. ....+++||+|+|||....-.+.+.+.. +.++++++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4455665553 2233 3678999999999997655444454442 45899999999999999888766
No 249
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.07 E-value=0.011 Score=53.64 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=86.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC--CCeEEEEecchhhhhhh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL--GLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 125 (226)
..+-.++..|--.|||+... +++..+.. ...+.++++.+|.+..++.+++++....+.. +..+....+. ..
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~-s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALA-TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI 325 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHH-hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE
Confidence 45677889999999999655 54443321 2236799999999999999999998886643 1112222221 11
Q ss_pred CCCcCCC--CCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 126 GPRSAQK--FDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 126 ~~~~~~~--~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.....++ +.|...+. +..+...=.+++++|+|||+.+.+. ....+.-.+. ..+++.+++|.|.
T Consensus 326 ~i~f~nG~kstI~FaSa--------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~---~~n~k~I~ISS~N 390 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS--------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLN---QTNCKIIFVSSTN 390 (738)
T ss_pred EEEecCCCccEEEEEec--------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHh---ccCccEEEEecCC
Confidence 0011112 24555422 1112333458999999999988765 3444433332 3589999999996
Q ss_pred ch-hHHHHHH
Q psy12977 204 TE-DVAKWCR 212 (226)
Q Consensus 204 ~~-~~~~~~~ 212 (226)
.. ...-|+.
T Consensus 391 s~~~sTSFL~ 400 (738)
T PHA03368 391 TGKASTSFLY 400 (738)
T ss_pred CCccchHHHH
Confidence 64 3344443
No 250
>KOG0739|consensus
Probab=97.07 E-value=0.014 Score=48.16 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=76.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+-+++-+|+|+||+..+-..+-+ .+ -+.+-+.+..|+..+.-.-..+-+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE-----An---STFFSvSSSDLvSKWmGESEkLVk----------------------- 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE-----AN---STFFSVSSSDLVSKWMGESEKLVK----------------------- 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh-----cC---CceEEeehHHHHHHHhccHHHHHH-----------------------
Confidence 34899999999999643322211 11 356777777888765543333311
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc-------CCCCceEEEEeee
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC-------SGPNLKRGMFSAT 202 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~-------~~~~~q~v~~SAT 202 (226)
.|+.+.+. ..-+++.|||+|.+......+-.+.-.+|...+ -+.+--++.+.||
T Consensus 216 ------------nLFemARe-------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 ------------NLFEMARE-------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred ------------HHHHHHHh-------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 23333332 244689999999887655444455555554443 2455677888999
Q ss_pred -CchhHHHHHHHhcCCCeEEec
Q psy12977 203 -HTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 203 -~~~~~~~~~~~~~~~p~~i~~ 223 (226)
.|=.+...+++.+...++|-+
T Consensus 277 NiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred CCchhHHHHHHHHhhcceeccC
Confidence 565677778887777777644
No 251
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.07 E-value=0.0022 Score=52.90 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=50.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhc---CCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLR---GPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~---~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
.++++.|+|+.|||...--..-..-. .....-|-+.+-+|...-....+..+-... +.......... ..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~~~~~~~---~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYRPRDRVA---KL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccCCCCCHH---HH--
Confidence 57999999999999854221111111 011112455666677766666665543332 22211000000 00
Q ss_pred CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 127 PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
-.+..+++. .-+++++||||+|.++...
T Consensus 134 -------------~~~~~~llr-------~~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 134 -------------EQQVLRLLR-------RLGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred -------------HHHHHHHHH-------HcCCcEEEeechHHHhccc
Confidence 012223333 3478899999999987653
No 252
>KOG0392|consensus
Probab=97.07 E-value=0.0058 Score=58.42 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCC-----CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKN-----LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~-----~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
+-+=|++-.=|-|||+-.+..+.....+... ...-.+|+||+ .|+--|..++.++++.+ ++....|.. .+.
T Consensus 994 ~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pfL--~v~~yvg~p-~~r 1069 (1549)
T KOG0392|consen 994 KLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPFL--KVLQYVGPP-AER 1069 (1549)
T ss_pred cccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcchh--hhhhhcCCh-HHH
Confidence 4466899999999998766554443322211 11227999998 48899999999998873 333223222 222
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
...+.-.++++|+|+..+.+.+.+.. +.-.++.|.|+||-|.+-.. ...+....+++ ..+ ..+.+|.|+
T Consensus 1070 ~~lR~q~~~~~iiVtSYDv~RnD~d~----l~~~~wNYcVLDEGHVikN~-----ktkl~kavkqL-~a~-hRLILSGTP 1138 (1549)
T KOG0392|consen 1070 RELRDQYKNANIIVTSYDVVRNDVDY----LIKIDWNYCVLDEGHVIKNS-----KTKLTKAVKQL-RAN-HRLILSGTP 1138 (1549)
T ss_pred HHHHhhccccceEEeeHHHHHHHHHH----HHhcccceEEecCcceecch-----HHHHHHHHHHH-hhc-ceEEeeCCC
Confidence 22344457789999998887754321 11235679999999977432 22333333333 123 345568994
Q ss_pred c
Q psy12977 204 T 204 (226)
Q Consensus 204 ~ 204 (226)
=
T Consensus 1139 I 1139 (1549)
T KOG0392|consen 1139 I 1139 (1549)
T ss_pred c
Confidence 3
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.006 Score=49.54 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.5
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
++..+.++++.||+|+|||..+..- ...+... +.+ ++.+++.+++.++...+
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai-~~~l~~~---g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAI-GNELLKA---GIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHH-HHHHHHc---CCe-EEEEEHHHHHHHHHHHH
Confidence 3347889999999999999765443 3333321 333 55567888888766644
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.0086 Score=49.97 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCCccEEEEcccccccccCccchHHHH-HHHHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQL-AVIYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i-~~i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
+.++++||+||...-.-.. -..+.+ ..++.........+++.|.-.++++.+.+
T Consensus 215 l~~~dlLiIDDiG~e~~s~--~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSS--WVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred hcCCCEEEEecCCCccccH--HHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 5578899999998543221 122233 44544432356778887776666655443
No 255
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.0034 Score=44.93 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=33.2
Q ss_pred ccEEEEcccccccccC-------ccchHHHHHHHHHhcCCC--CceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 159 VEWLIVDESDKLFEAG-------VRGFRDQLAVIYAACSGP--NLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~-------~~~~~~~i~~i~~~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
-.++++||+|.+.... .......+...+...... +..+++.|.+ ++.+...+.+ -.....+++
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~-~~~i~~~l~~-~rf~~~i~~ 130 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS-PDKIDPALLR-SRFDRRIEF 130 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS-GGGSCHHHHS-TTSEEEEEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC-hhhCCHhHHh-CCCcEEEEc
Confidence 4799999999987663 011234444445444332 2344444444 5555555553 333444443
No 256
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0071 Score=50.48 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
....+++++||+|.|... ....+.+.++.- +.++.+++.+. -|..+
T Consensus 107 ~~~~kviiidead~mt~~----A~nallk~lEep-~~~~~~il~~n-~~~~i 152 (325)
T COG0470 107 EGGYKVVIIDEADKLTED----AANALLKTLEEP-PKNTRFILITN-DPSKI 152 (325)
T ss_pred CCCceEEEeCcHHHHhHH----HHHHHHHHhccC-CCCeEEEEEcC-Chhhc
Confidence 467899999999999775 455565666544 45566666544 34333
No 257
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.002 Score=56.58 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.7
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~ 111 (226)
+.-.+-|.||||||+...-.+ .... .-++|++|++.||-|.+..++++++.-.+.
T Consensus 33 ~~QtLLGvTGSGKTfT~AnVI-~~~~------rPtLV~AhNKTLAaQLy~Efk~fFP~NaVE 87 (663)
T COG0556 33 KHQTLLGVTGSGKTFTMANVI-AKVQ------RPTLVLAHNKTLAAQLYSEFKEFFPENAVE 87 (663)
T ss_pred eeeEEeeeccCCchhHHHHHH-HHhC------CCeEEEecchhHHHHHHHHHHHhCcCcceE
Confidence 567889999999998754433 3222 247999999999999999999999764443
No 258
>KOG0953|consensus
Probab=97.02 E-value=0.0022 Score=56.46 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
++-++=+|||.||||..+ ++++.. ...++|.-|.|-||..+++.+... |+.+....|....... .
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~----aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~---~ 255 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKS----AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL---D 255 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhh----hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC---C
Confidence 455677899999999764 555543 235699999999999999998887 6666555554211111 1
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
....++.+=||-++.. .-..++..|+||.+.|-|.
T Consensus 256 ~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 256 NGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred CCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCc
Confidence 1234567777766431 1335679999999987665
No 259
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.02 E-value=0.0044 Score=52.10 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
...+++|+||+|.+.+. ....+..+++.. ++.+.+++.+.
T Consensus 124 ~~~~vlilDe~~~l~~~----~~~~L~~~le~~-~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED----AQQALRRIMEQY-SRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH----HHHHHHHHHHhc-cCCCeEEEEeC
Confidence 45679999999987543 445666666655 34566666443
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.014 Score=54.29 Aligned_cols=133 Identities=13% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceE-EEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRA-VIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~-iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
.++-+.+.||||+|||.....-+....... . +.++ ++-+.+...+ ..++++.+.+..++.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G-~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv-------------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVARE-G-ADQLALLTTDSFRIG--ALEQLRIYGRILGVPV-------------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHc-C-CCeEEEecCcccchH--HHHHHHHHHHhCCCCc--------------
Confidence 356788999999999987654433322111 1 1233 3333333221 1344555555444432
Q ss_pred CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc-h
Q psy12977 127 PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT-E 205 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~-~ 205 (226)
..+.+|..+.+.+.. +.+.++++||=+=+..... .....+..+.... .+..-++.+|||.. +
T Consensus 246 --------~~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d~--~l~eel~~l~~~~-~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 246 --------HAVKDAADLRFALAA------LGDKHLVLIDTVGMSQRDR--NVSEQIAMLCGVG-RPVRRLLLLNAASHGD 308 (767)
T ss_pred --------cccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccCH--HHHHHHHHHhccC-CCCeEEEEECCCCcHH
Confidence 123366666666654 4456789998887654321 3444555544433 34445667788754 5
Q ss_pred hHHHHHHHhc
Q psy12977 206 DVAKWCRRKL 215 (226)
Q Consensus 206 ~~~~~~~~~~ 215 (226)
++.+.+++|-
T Consensus 309 ~l~~i~~~f~ 318 (767)
T PRK14723 309 TLNEVVHAYR 318 (767)
T ss_pred HHHHHHHHHh
Confidence 5666666663
No 261
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.99 E-value=0.0018 Score=59.70 Aligned_cols=89 Identities=16% Similarity=0.057 Sum_probs=62.7
Q ss_pred CCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 36 FEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 36 ~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
+++.|..+... .+.+++|.|.+|||||.....-+...+........++++++.|+.-+.++.+.+.+..+..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-------
Confidence 56777665433 3568999999999999987766666664322334588999999999999988887664310
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhH
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLL 147 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~ 147 (226)
....+-|+|..++...+
T Consensus 74 ---------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 ---------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred ---------------ccCCeEEEeHHHHHHHH
Confidence 11247788888886544
No 262
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.97 E-value=0.015 Score=44.81 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=26.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....+++|+||+|.+... ....+...++.- ++.+-+++.+
T Consensus 94 ~~~~kviiide~~~l~~~----~~~~Ll~~le~~-~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA----AANALLKTLEEP-PPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHH----HHHHHHHHhcCC-CCCeEEEEEE
Confidence 456789999999998764 344555555553 4455666554
No 263
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.012 Score=50.44 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=24.8
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+.+++|+||+|.+... ....+.+.++.- ++.+.+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~----a~naLLk~lEe~-~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHH----HHHHHHHHHhcC-CCCeEEEEEc
Confidence 45689999999988654 333445555443 4456666644
No 264
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.011 Score=54.25 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.1
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+.+++||||+|.+... ....+.++++.- +..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~----A~NALLKtLEEP-p~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKS----AFNAMLKTLEEP-PEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHH----HHHHHHHHHHhC-CCCcEEEEEe
Confidence 46789999999987654 334555555554 4566777654
No 265
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.96 E-value=0.0032 Score=58.95 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch-----
Q psy12977 131 QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE----- 205 (226)
Q Consensus 131 ~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~----- 205 (226)
....|+++||..+...+-. +.+++..+..+|+||||++.+. .....+.++++.- ++..-+.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~--~ri~~~~itgiiv~~Ahr~~~~---~~eaFI~rlyr~~-n~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT--GIIPPELITGILVLRADRIIES---SQEAFILRLYRQK-NKTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred hcCCEEEEechhhHhHHhc--CCCCHHHccEEEEeeccccccc---ccHHHHHHHHHHh-CCCcceEEecCCCcccccch
Confidence 3456999999999988877 8999999999999999999877 4555666777666 567789999999774
Q ss_pred -hHHHHHHHhcCCCe
Q psy12977 206 -DVAKWCRRKLKRRV 219 (226)
Q Consensus 206 -~~~~~~~~~~~~p~ 219 (226)
.+.+.++...-..+
T Consensus 80 ~~l~~vmk~L~i~~v 94 (814)
T TIGR00596 80 SPLETKMRNLFLRHV 94 (814)
T ss_pred HHHHHHHHHhCcCeE
Confidence 45666655443333
No 266
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.95 E-value=0.0055 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
..|..+++.+++|+|||......+...+.+ +.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN----GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 457789999999999998654444444432 4577888743 3335555555444
No 267
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.94 E-value=0.0076 Score=58.06 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCCCcccccc-cC-CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 35 HFEPHFTITY-LS-PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~-~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
.+++-|..+. .+ ..++-.+++|+.|+|||... -.+...+.. .+.+++-++||-.-+....+ ..+...
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---~G~~V~g~ApTgkAA~~L~e-------~~Gi~a 449 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA---AGYRVVGGALAGKAAEGLEK-------EAGIQS 449 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEcCcHHHHHHHHH-------hhCCCe
Confidence 5778786664 23 34566899999999999754 334444432 25689999999766655433 123322
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
. |-.++..... .+...+..-++|||||+..+... .+..+++.....
T Consensus 450 ~-------------------------TIas~ll~~~--~~~~~l~~~~vlVIDEAsMv~~~-------~m~~Ll~~~~~~ 495 (1102)
T PRK13826 450 R-------------------------TLSSWELRWN--QGRDQLDNKTVFVLDEAGMVASR-------QMALFVEAVTRA 495 (1102)
T ss_pred e-------------------------eHHHHHhhhc--cCccCCCCCcEEEEECcccCCHH-------HHHHHHHHHHhc
Confidence 1 2222211111 12334666789999999965332 444556655456
Q ss_pred CceEEEEeee
Q psy12977 193 NLKRGMFSAT 202 (226)
Q Consensus 193 ~~q~v~~SAT 202 (226)
.++++++.=+
T Consensus 496 garvVLVGD~ 505 (1102)
T PRK13826 496 GAKLVLVGDP 505 (1102)
T ss_pred CCEEEEECCH
Confidence 7899988766
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.032 Score=45.69 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH--HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR--ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
+..+.+.+|+|+|||..+..-+...... ...-.++-+.+. ....|+ +...+..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~--------------- 132 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQL----QDYVKTIGFE--------------- 132 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHH----HHHhhhcCce---------------
Confidence 3678999999999998765443332221 122333444332 233333 3333322322
Q ss_pred CCcCCCCCEEE-ECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC-c
Q psy12977 127 PRSAQKFDVLI-TTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH-T 204 (226)
Q Consensus 127 ~~~~~~~~IiV-~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~-~ 204 (226)
+.. .++..+.+.+... -...+.+++++|.+=+..... .....+..+.+.. .+..-.+.+|||. +
T Consensus 133 --------~~~~~~~~~l~~~l~~l---~~~~~~D~ViIDt~Gr~~~~~--~~l~el~~~~~~~-~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 133 --------VIAVRDEAAMTRALTYF---KEEARVDYILIDTAGKNYRAS--ETVEEMIETMGQV-EPDYICLTLSASMKS 198 (270)
T ss_pred --------EEecCCHHHHHHHHHHH---HhcCCCCEEEEECCCCCcCCH--HHHHHHHHHHhhh-CCCeEEEEEcCccCH
Confidence 222 2455555444321 112467899999997653221 3555666666555 3333456689884 5
Q ss_pred hhHHHHHHHhcC
Q psy12977 205 EDVAKWCRRKLK 216 (226)
Q Consensus 205 ~~~~~~~~~~~~ 216 (226)
.+..+.+++|-.
T Consensus 199 ~d~~~~~~~f~~ 210 (270)
T PRK06731 199 KDMIEIITNFKD 210 (270)
T ss_pred HHHHHHHHHhCC
Confidence 678888887753
No 269
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.0088 Score=54.38 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++||||+|.+... ....+.+.++.- ++.+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~----a~naLLKtLEeP-p~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA----AFNALLKTLEEP-PPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH----HHHHHHHHHHhC-CCCeEEEEEe
Confidence 456789999999988754 344555555554 4566777754
No 270
>KOG0388|consensus
Probab=96.92 E-value=0.0029 Score=57.37 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh---
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE--- 123 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 123 (226)
.+|-|-++...-|-|||.-.+..+.+..+.....|| .+|++|...| +.+.+++.++++. .++.-.-|+..+..
T Consensus 584 dqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGP-FLVVtpaStL-~NWaqEisrFlP~--~k~lpywGs~~eRkiLr 659 (1185)
T KOG0388|consen 584 DQGINGILADEMGLGKTVQSISVLAHLAETHNIWGP-FLVVTPASTL-HNWAQEISRFLPS--FKVLPYWGSPSERKILR 659 (1185)
T ss_pred HccccceehhhhccchhHHHHHHHHHHHHhccCCCc-eEEeehHHHH-hHHHHHHHHhCcc--ceeecCcCChhhhHHHH
Confidence 456677899999999998775555555554444454 5677787655 6677777777663 33333333332221
Q ss_pred hhC-----CCcCCCCCEEEECchHHHH---hHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCce
Q psy12977 124 KFG-----PRSAQKFDVLITTPNKLVY---LLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLK 195 (226)
Q Consensus 124 ~~~-----~~~~~~~~IiV~Tp~~l~~---~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q 195 (226)
++. .....+.||+|++.+.+.. ++++ -++.+.|+|||+.+-+. ....++.++.. ...-
T Consensus 660 Kfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-------vKWQYMILDEAQAIKSS----sS~RWKtLLsF---~cRN 725 (1185)
T KOG0388|consen 660 KFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-------VKWQYMILDEAQAIKSS----SSSRWKTLLSF---KCRN 725 (1185)
T ss_pred HhcchhhhhccCCCceEEEEeeeeeechHHHHHh-------hhhhheehhHHHHhhhh----hhhHHHHHhhh---hccc
Confidence 111 1245678999998776643 3322 24569999999988655 34455555432 1234
Q ss_pred EEEEeeeCchhH
Q psy12977 196 RGMFSATHTEDV 207 (226)
Q Consensus 196 ~v~~SAT~~~~~ 207 (226)
.++++.|+=.+-
T Consensus 726 RLLLTGTPIQNs 737 (1185)
T KOG0388|consen 726 RLLLTGTPIQNS 737 (1185)
T ss_pred eeeecCCccchH
Confidence 567788865443
No 271
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.014 Score=50.02 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
....-++|+||+|.+.+... ..+..+.+.......++.+..-+..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG----EVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred cCCeEEEEEcchhhhccccc----hHHHHHHhhccccceeEEEEEEecc
Confidence 34556999999999988742 5555555554333455555444433
No 272
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.91 E-value=0.01 Score=49.52 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=26.5
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
..+++|+||+|.+... .....+..+++.. +.++++++.|.
T Consensus 100 ~~~vliiDe~d~l~~~---~~~~~L~~~le~~-~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA---DAQRHLRSFMEAY-SKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCH---HHHHHHHHHHHhc-CCCceEEEEcC
Confidence 4579999999988333 2455666666665 45667776543
No 273
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.87 E-value=0.002 Score=59.49 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=53.7
Q ss_pred cCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 34 KHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 34 ~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
..+++.|..+.... ..+++|.|.+|||||.....-+...+......+.++++++.|+..|..+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVNG-EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhCC-CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 35677776665433 3568999999999998876665555544444456899999999999999988877654
No 274
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0055 Score=52.22 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.8
Q ss_pred CeEEEECCCCchHhHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~ 68 (226)
.+.|++||+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5799999999999976443
No 275
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0092 Score=56.12 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=28.3
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
.+.+++||||+|.|... ....+.++++.- +..+.+++. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~e----AqNALLKtLEEP-P~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS----SFNALLKTLEEP-PEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHH----HHHHHHHHHhcc-CCCeEEEEE-CCCchh
Confidence 46789999999998654 455666666554 345566664 444443
No 276
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.85 E-value=0.0016 Score=60.75 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=53.8
Q ss_pred cCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 34 KHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 34 ~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
..++|.|..+... ...+++|.|.+|||||.....-+...+........+++.++-|+.-|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 4578888666543 3578999999999999987776666665333334589999999999999888887764
No 277
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.017 Score=51.10 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~ 68 (226)
+.++++||+|+|||..+..
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999986544
No 278
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.014 Score=53.27 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=26.1
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.+.+++||||+|.+... ....+.+.++.- +..+.+++.+ |-+
T Consensus 123 g~~KV~IIDEvh~Ls~~----a~NaLLKtLEEP-P~~~~fIL~T-td~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT----AFNAMLKTLEEP-PEYLKFVLAT-TDP 164 (618)
T ss_pred CCceEEEEEChhhCCHH----HHHHHHHhcccC-CCCeEEEEEE-CCc
Confidence 46889999999998765 233444444443 3455666543 543
No 279
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.014 Score=49.18 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=27.4
Q ss_pred CccEEEEccccccccc-------CccchHHHHHHHHHhc----CCCCceEEEEeeeC
Q psy12977 158 NVEWLIVDESDKLFEA-------GVRGFRDQLAVIYAAC----SGPNLKRGMFSATH 203 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~-------~~~~~~~~i~~i~~~~----~~~~~q~v~~SAT~ 203 (226)
.-+.+.|||.|.+... +.+.....+.+++.++ +..+.++++ ||.
T Consensus 244 aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~--ATN 298 (406)
T COG1222 244 APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM--ATN 298 (406)
T ss_pred CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE--ecC
Confidence 4568999999988543 2334555666666665 234556665 773
No 280
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.78 E-value=0.015 Score=46.18 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
..|..+++.+++|+|||......+...+.+ +..++++.. .+-.+++.+..+.+
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 457889999999999997554434444432 346777754 33445554444443
No 281
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.78 E-value=0.004 Score=50.69 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
..|.-+++.|++|+|||...+--+.+.+.+ +.+++|++-
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEEe
Confidence 356778999999999997655545554432 457788763
No 282
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.77 E-value=0.012 Score=50.34 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
..+.+.++|+.|.|||+.. =..++.+.. ..+.|+ .-.+-+.++.+.+.++.. .. .
T Consensus 61 ~~~GlYl~G~vG~GKT~Lm-d~f~~~lp~--~~k~R~----HFh~Fm~~vh~~l~~~~~-----------~~---~---- 115 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLM-DLFYDSLPI--KRKRRV----HFHEFMLDVHSRLHQLRG-----------QD---D---- 115 (362)
T ss_pred CCceEEEECCCCCchhHHH-HHHHHhCCc--cccccc----cccHHHHHHHHHHHHHhC-----------CC---c----
Confidence 4578999999999999742 222333321 112222 446777777777766640 00 0
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
.-..+.+.+ .....+|.+||+| +.|- +-.-.+.++++.+...+.-+|.+|.+.|+++
T Consensus 116 -----------~l~~va~~l--------~~~~~lLcfDEF~-V~Di---aDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 116 -----------PLPQVADEL--------AKESRLLCFDEFQ-VTDI---ADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -----------cHHHHHHHH--------HhcCCEEEEeeee-ccch---hHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 001222222 2355699999999 4444 3455666777777778999999999999753
No 283
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0048 Score=58.40 Aligned_cols=145 Identities=22% Similarity=0.168 Sum_probs=85.6
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhh----hhh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQA----AEK 124 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 124 (226)
+.+-++...-|.|||...+..+.......+...+.+++++|+. +..++.+.+..+...... +....|.... ...
T Consensus 358 ~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~ 435 (866)
T COG0553 358 LLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREA 435 (866)
T ss_pred cCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHH
Confidence 4555677999999998765554443332222245788988984 778888888777765553 4444443321 122
Q ss_pred hCCCcCC----CCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 125 FGPRSAQ----KFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 125 ~~~~~~~----~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....... ..+++++|-+.+.+.. .+...+.-...+.+|+||+|.+-.... .-...+..+.. . -.+.+|
T Consensus 436 ~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~s-~~~~~l~~~~~-----~-~~~~Lt 507 (866)
T COG0553 436 LRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQS-SEGKALQFLKA-----L-NRLDLT 507 (866)
T ss_pred HHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhhh-HHHHHHHHHhh-----c-ceeeCC
Confidence 2111221 2789999998887742 122445566788999999999755421 23333332221 1 226778
Q ss_pred eeC
Q psy12977 201 ATH 203 (226)
Q Consensus 201 AT~ 203 (226)
.|+
T Consensus 508 gTP 510 (866)
T COG0553 508 GTP 510 (866)
T ss_pred CCh
Confidence 886
No 284
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.024 Score=50.81 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=28.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++|+||+|.+... ....+.+.++.- ++.+.+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~----A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE----AFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHHhhc-CCceEEEEEE
Confidence 357789999999988765 455666666665 5567777754
No 285
>KOG0386|consensus
Probab=96.74 E-value=0.0023 Score=59.83 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE--ecchhhhhhh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI--GKIQQAAEKF 125 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 125 (226)
++-|=++.-.+|-|||.....-+...++.....|| .+|++|+-.|.+ +...+..+ ...+..+ .|.......+
T Consensus 412 NnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP-~LvivPlstL~N-W~~Ef~kW----aPSv~~i~YkGtp~~R~~l 485 (1157)
T KOG0386|consen 412 NNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP-FLIIVPLSTLVN-WSSEFPKW----APSVQKIQYKGTPQQRSGL 485 (1157)
T ss_pred CCcccccchhcccchHHHHHHHHHHHHHHcccCCC-eEEeccccccCC-chhhcccc----ccceeeeeeeCCHHHHhhH
Confidence 34567899999999998754433333332333344 466689877754 33333333 2233322 2222211111
Q ss_pred -CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 126 -GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 126 -~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
......+.+|+++|-+.+.. ++..+.--++.++||||-|+|-.. ...+...+.-. -.....+++|.|+-
T Consensus 486 ~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa-----~~KLt~~L~t~-y~~q~RLLLTGTPL 555 (1157)
T KOG0386|consen 486 TKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA-----ICKLTDTLNTH-YRAQRRLLLTGTPL 555 (1157)
T ss_pred HHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch-----hhHHHHHhhcc-ccchhhhhhcCChh
Confidence 12334889999999887654 334455566789999999998643 23333333211 12334566788844
Q ss_pred ----hhHHHHHHHhc
Q psy12977 205 ----EDVAKWCRRKL 215 (226)
Q Consensus 205 ----~~~~~~~~~~~ 215 (226)
++.+.+++..+
T Consensus 556 QN~LpELWaLLNFlL 570 (1157)
T KOG0386|consen 556 QNNLPELWALLNFLL 570 (1157)
T ss_pred hhccHHHHHHHHHhc
Confidence 34555554433
No 286
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.73 E-value=0.029 Score=46.69 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=26.0
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
..+++++||+|.+... ....+..+++.. ++.+.+++.+.
T Consensus 102 ~~~vviiDe~~~l~~~----~~~~L~~~le~~-~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD----AQQALRRTMEMY-SQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH----HHHHHHHHHhcC-CCCCeEEEEeC
Confidence 4579999999988654 345566666654 45667776543
No 287
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.05 Score=48.59 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=66.0
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEE-cccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIV-CPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil-~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
++..|+.+.+.||+|+|||.....-+....... .+.++.++ ..+...+. .++++.+....+..+..
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLIdtDtyRigA--~EQLk~ya~iLgv~v~~--------- 412 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVTTDTQRVGG--REQLHSYGRQLGIAVHE--------- 412 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEecccccccH--HHHHHHhhcccCceeEe---------
Confidence 345678899999999999987544333322221 12234333 33322211 13333443333332211
Q ss_pred hhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 124 KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 124 ~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
+-++..+...+.. +.+.++|+||.+=...... .....+..+.... ...-+++++++.
T Consensus 413 -------------a~d~~~L~~aL~~------l~~~DLVLIDTaG~s~~D~--~l~eeL~~L~aa~--~~a~lLVLpAts 469 (559)
T PRK12727 413 -------------ADSAESLLDLLER------LRDYKLVLIDTAGMGQRDR--ALAAQLNWLRAAR--QVTSLLVLPANA 469 (559)
T ss_pred -------------cCcHHHHHHHHHH------hccCCEEEecCCCcchhhH--HHHHHHHHHHHhh--cCCcEEEEECCC
Confidence 1133445555543 3457899999886542221 2233333332222 223455666665
Q ss_pred c-hhHHHHHHHhc
Q psy12977 204 T-EDVAKWCRRKL 215 (226)
Q Consensus 204 ~-~~~~~~~~~~~ 215 (226)
. .++.+.+++|-
T Consensus 470 s~~Dl~eii~~f~ 482 (559)
T PRK12727 470 HFSDLDEVVRRFA 482 (559)
T ss_pred ChhHHHHHHHHHH
Confidence 4 45666666554
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.022 Score=51.23 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++||||+|.+... ....+.+.++.- +..+.+++.|
T Consensus 117 ~~~~kVvIIDEad~ls~~----a~naLLK~LEep-p~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS----AFNAMLKTLEEP-PEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH----HHHHHHHHHhCC-CCCEEEEEEe
Confidence 346789999999988765 334455555553 4566777654
No 289
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.70 E-value=0.0032 Score=58.16 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=52.9
Q ss_pred CCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 36 FEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 36 ~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
+++.|..+... .+.+++|.|++|||||.....-+...+........++++++.|+.-|.++.+.+..+..
T Consensus 3 Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 57777666533 34678899999999999877766666653333345899999999999999988877653
No 290
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.054 Score=47.13 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
..++.+.+.||||+|||.....-+........ ...-.++...+...+ ..+++..+++.++..+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~------------ 253 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS------------ 253 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceec------------
Confidence 45677899999999999875543332222111 112355556654432 234455555544544322
Q ss_pred CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC-ch
Q psy12977 127 PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH-TE 205 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~-~~ 205 (226)
+.++..+...+.. +.+.+.+.+|.+=+.-.. ......+..+.... .+.-.++.+|||. .+
T Consensus 254 ----------v~~~~dl~~al~~------l~~~d~VLIDTaGrsqrd--~~~~~~l~~l~~~~-~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 254 ----------IKDIADLQLMLHE------LRGKHMVLIDTVGMSQRD--QMLAEQIAMLSQCG-TQVKHLLLLNATSSGD 314 (420)
T ss_pred ----------CCCHHHHHHHHHH------hcCCCEEEecCCCCCcch--HHHHHHHHHHhccC-CCceEEEEEcCCCCHH
Confidence 2233333333332 556688999986322111 02334444432211 2333556788885 46
Q ss_pred hHHHHHHHhcC
Q psy12977 206 DVAKWCRRKLK 216 (226)
Q Consensus 206 ~~~~~~~~~~~ 216 (226)
++.+.+..|-.
T Consensus 315 ~~~~~~~~f~~ 325 (420)
T PRK14721 315 TLDEVISAYQG 325 (420)
T ss_pred HHHHHHHHhcC
Confidence 67777777653
No 291
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.017 Score=52.31 Aligned_cols=45 Identities=22% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
..+.+++||||+|.+... ....+..+++.- ++.+-+++.+ |-++.
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEp-p~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEP-PEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcC-CCCeEEEEEe-CChHh
Confidence 356789999999988755 444555556554 4455666654 54433
No 292
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.013 Score=53.63 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=26.4
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.+.+++||||+|.|... ....+.++++.- ++.+.+++. .|-+
T Consensus 118 g~~KV~IIDEah~Ls~~----a~NALLKtLEEP-p~~v~FIL~-Tt~~ 159 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PEHVKFLLA-TTDP 159 (647)
T ss_pred CCCEEEEEechHhCCHH----HHHHHHHHHHcC-CCCeEEEEe-cCCc
Confidence 46789999999988765 344555555553 344555554 4433
No 293
>KOG1805|consensus
Probab=96.69 E-value=0.0033 Score=58.70 Aligned_cols=128 Identities=12% Similarity=0.107 Sum_probs=75.9
Q ss_pred cccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 32 IFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 32 ~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
.+..+|..|.++. .+......+|.|=||+|||......+-..+. .+.+++..+-|..=+..+.-.++...
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~----~gkkVLLtsyThsAVDNILiKL~~~~---- 737 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA----LGKKVLLTSYTHSAVDNILIKLKGFG---- 737 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH----cCCeEEEEehhhHHHHHHHHHHhccC----
Confidence 4557788887774 3334455799999999999764333222222 25689999999988777766665552
Q ss_pred CeEEEEecch----------------hhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 110 LRAHVIGKIQ----------------QAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 110 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
+...-.+... .+....-....+.+.|+.||---+.+.+ +....+|+.|+|||-++...
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl------f~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL------FVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh------hhccccCEEEEccccccccc
Confidence 2211111110 0000000123466788888854443332 22456899999999987643
No 294
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.024 Score=51.25 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=25.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
....+++||||+|.+... ....+.+.++.- ++.+.+++. +|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEep-p~~~ifIla-tt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEP-PAHVIFILA-TTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCC-CCCeEEEEE-eCChh
Confidence 456789999999988654 333444455443 334444443 44443
No 295
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.025 Score=48.96 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=23.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++|+||+|.+... ....+...++.- ++.+.+++.+
T Consensus 125 ~~~~kvvIIdea~~l~~~----~~~~LLk~LEep-~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA----AFNAFLKTLEEP-PPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHH----HHHHHHHHHhcC-CCCeEEEEEe
Confidence 456789999999998654 233444444433 3344555543
No 296
>KOG0738|consensus
Probab=96.67 E-value=0.02 Score=48.73 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=41.0
Q ss_pred CCccEEEEcccccccccCcc-chHHHHHHHHHhc-------C---CCCceEEEEeee-CchhHHHHHHHhcCCCeEEec
Q psy12977 157 ANVEWLIVDESDKLFEAGVR-GFRDQLAVIYAAC-------S---GPNLKRGMFSAT-HTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~-~~~~~i~~i~~~~-------~---~~~~q~v~~SAT-~~~~~~~~~~~~~~~p~~i~~ 223 (226)
-.-..+.|||+|.+.+..+. +-.+.-++....+ . ....-++.+.|| +|=++.+.+.+.+...++|-+
T Consensus 303 yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPL 381 (491)
T KOG0738|consen 303 YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPL 381 (491)
T ss_pred hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeC
Confidence 34568999999998764322 2222222222222 1 122336677888 888888888888877777754
No 297
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.66 E-value=0.022 Score=49.61 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.2
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.||+|+|||....
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997643
No 298
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.02 Score=51.41 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=26.3
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++||||+|.+... ....+...++.- +..+.+++.+
T Consensus 117 ~g~~kViIIDEa~~ls~~----a~naLLK~LEep-p~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ----SFNALLKTLEEP-PEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH----HHHHHHHHHhcC-CCCceEEEEE
Confidence 346689999999998765 444555566553 4455666644
No 299
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.62 E-value=0.017 Score=53.69 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=24.2
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
+..++++||+|.+... ....+...+ ...++++.++|-+.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-----E~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-----ENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-----cCceEEEEEecCCC
Confidence 3468999999988644 233333322 34567777777543
No 300
>KOG0384|consensus
Probab=96.61 E-value=0.014 Score=55.98 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCCchHhHH---HHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAA---FLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE 123 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~---~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (226)
..+.+.|+.-.-|-|||.- |+..+++...- .| -.|+++|...+ ..+.+.+..+. ..++.+..|......
T Consensus 387 ~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~---~g-pflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~ 458 (1373)
T KOG0384|consen 387 YKRNNCILADEMGLGKTVQTITFLSYLFHSLQI---HG-PFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQ 458 (1373)
T ss_pred HhcccceehhhcCCCcchHHHHHHHHHHHhhhc---cC-CeEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHH
Confidence 4578899999999999954 44445444422 23 35677787544 44666676666 333333333332221
Q ss_pred ---hhCCCc-----CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCce
Q psy12977 124 ---KFGPRS-----AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLK 195 (226)
Q Consensus 124 ---~~~~~~-----~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q 195 (226)
....-. .-+.+++++|.+.++.... .+.--...++++||||++-... ..+...+..+ . .-.
T Consensus 459 ~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----~L~~i~w~~~~vDeahrLkN~~-----~~l~~~l~~f-~-~~~ 527 (1373)
T KOG0384|consen 459 LIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----ELSKIPWRYLLVDEAHRLKNDE-----SKLYESLNQF-K-MNH 527 (1373)
T ss_pred HHHHHHheecCCccccccceeehhhHHHhccHh----hhccCCcceeeecHHhhcCchH-----HHHHHHHHHh-c-ccc
Confidence 111111 1258999999998766443 3334456799999999996441 2222224344 2 233
Q ss_pred EEEEeeeCc-hhHHHHH
Q psy12977 196 RGMFSATHT-EDVAKWC 211 (226)
Q Consensus 196 ~v~~SAT~~-~~~~~~~ 211 (226)
.++.|.|+= ..++++.
T Consensus 528 rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 528 RLLITGTPLQNSLKELW 544 (1373)
T ss_pred eeeecCCCccccHHHHH
Confidence 455678854 3444443
No 301
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.028 Score=51.09 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=28.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+.+++||||+|.+... ....+.++++.- ++.+.+++.+ |-++
T Consensus 117 ~~~~KVvIIdev~~Lt~~----a~naLLk~LEep-p~~~~fIl~t-~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN----AFNALLKTLEEP-PPHVKFIFAT-TEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHH----HHHHHHHHHHcC-CCCeEEEEEe-CChh
Confidence 457789999999988754 344555666553 4455666544 5443
No 302
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.60 E-value=0.015 Score=46.16 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.+++++||+|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 46899999999999754
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.60 E-value=0.026 Score=49.64 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
|.-+++.+++|+|||...+..+..... .+.+++|+.- .+-.+|+......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~----~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA----AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 466899999999999855443333332 2457888764 44556665555444
No 304
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.60 E-value=0.0041 Score=49.37 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC-----CeEEEEecchhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG-----LRAHVIGKIQQA 121 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~-----~~~~~~~~~~~~ 121 (226)
..|..+++.||+|+|||...+-.+.+.+.+. +.+++|++- .+-.+++.+.++.+.-+.. ............
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 4567899999999999976555555555420 336777763 4444666665555532110 012222111110
Q ss_pred hhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc-cCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 122 AEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE-AGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 122 ~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~-~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
... . -..++.+...+.. .+.-.+.+.+|+|-...+.. .....+...+..+...+ .....+++++
T Consensus 93 ~~~--------~---~~~~~~l~~~i~~---~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l-~~~~~t~llt 157 (226)
T PF06745_consen 93 IGW--------S---PNDLEELLSKIRE---AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFL-KSRGVTTLLT 157 (226)
T ss_dssp ST---------T---SCCHHHHHHHHHH---HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHH-HHTTEEEEEE
T ss_pred ccc--------c---ccCHHHHHHHHHH---HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHH-HHCCCEEEEE
Confidence 000 0 1123333333321 11112338999999998722 22224555566666665 2333444555
Q ss_pred ee
Q psy12977 201 AT 202 (226)
Q Consensus 201 AT 202 (226)
+.
T Consensus 158 ~~ 159 (226)
T PF06745_consen 158 SE 159 (226)
T ss_dssp EE
T ss_pred Ec
Confidence 55
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.013 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
.++.+.+.||||+|||....-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456888999999999976543
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.048 Score=46.78 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceE-EEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRA-VIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~-iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
..++.+.+.||+|+|||....--+.....+ +.++ ++-+.+...+ ..++++.+.+..+..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~----g~~V~lItaDtyR~g--AveQLk~yae~lgvpv~------------ 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ----NRTVGFITTDTFRSG--AVEQFQGYADKLDVELI------------ 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCccCcc--HHHHHHHHhhcCCCCEE------------
Confidence 346778999999999997655444333332 2234 4444443221 12334445444343321
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc-
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT- 204 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~- 204 (226)
...+|..+...+... ....+.+++++|=+=+.... ......+..+.... .+..-.+.+||+..
T Consensus 266 ----------~~~dp~dL~~al~~l---~~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~-~p~~~~LVLsag~~~ 329 (407)
T PRK12726 266 ----------VATSPAELEEAVQYM---TYVNCVDHILIDTVGRNYLA--EESVSEISAYTDVV-HPDLTCFTFSSGMKS 329 (407)
T ss_pred ----------ecCCHHHHHHHHHHH---HhcCCCCEEEEECCCCCccC--HHHHHHHHHHhhcc-CCceEEEECCCcccH
Confidence 123455554443321 01234677777777554221 13445555555444 23333445566433
Q ss_pred hhHHHHHHHh
Q psy12977 205 EDVAKWCRRK 214 (226)
Q Consensus 205 ~~~~~~~~~~ 214 (226)
.++.+.+++|
T Consensus 330 ~d~~~i~~~f 339 (407)
T PRK12726 330 ADVMTILPKL 339 (407)
T ss_pred HHHHHHHHhc
Confidence 4555555544
No 307
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.026 Score=50.37 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.4
Q ss_pred CeEEEECCCCchHhHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~ 68 (226)
+-+++.||+|+|||.....
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4469999999999987543
No 308
>PRK05973 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.023 Score=45.57 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=44.8
Q ss_pred HhhccccCCCCccccc----------ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 28 VSNSIFKHFEPHFTIT----------YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 28 ~~~~~~~~~~~~Q~~~----------~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
-.++||..++-+...+ --+..|.-++|.|+||+|||...+-.+.+...+ +.+++|++ ..+-.+|+
T Consensus 33 a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfS-lEes~~~i 107 (237)
T PRK05973 33 AAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFT-LEYTEQDV 107 (237)
T ss_pred HHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEE-EeCCHHHH
Confidence 3467777665554222 123445678999999999998666555555542 44677774 33345666
Q ss_pred HHHHHHH
Q psy12977 98 YNETVRL 104 (226)
Q Consensus 98 ~~~~~~~ 104 (226)
.+.+..+
T Consensus 108 ~~R~~s~ 114 (237)
T PRK05973 108 RDRLRAL 114 (237)
T ss_pred HHHHHHc
Confidence 6666655
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.027 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=16.7
Q ss_pred CeEEEECCCCchHhHHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIPI 70 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~ 70 (226)
+.+++.||.|+|||.....-+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 567899999999998765443
No 310
>PRK04195 replication factor C large subunit; Provisional
Probab=96.48 E-value=0.02 Score=50.88 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=25.5
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
.-++||+||+|.+.....++....+..+++ ..+..+++.+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~ 139 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTAND 139 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccC
Confidence 456999999999876432234445555544 345566665433
No 311
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.48 E-value=0.019 Score=45.89 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
..|.-+++.|++|+|||.....-+...+.+ +.+++|+.-.. -..++.+.+..+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 346778999999999997655544554442 45777776543 334555555554
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.05 Score=46.36 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=27.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....+++||||+|.+... ....+.++++.- +.++.++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~----aanaLLk~LEEp-p~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN----AANAILKTLEEP-PARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH----HHHHHHHHHhcC-CCCceEEEEE
Confidence 456789999999998765 455566666663 4556666654
No 313
>KOG0737|consensus
Probab=96.42 E-value=0.036 Score=46.77 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=43.5
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhc--------CCCCceEEEEeeeC-chhHHHHHHHhcCCCeEEecC
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAAC--------SGPNLKRGMFSATH-TEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~--------~~~~~q~v~~SAT~-~~~~~~~~~~~~~~p~~i~~~ 224 (226)
..+.|||+|.++.....+-.+....+..++ .+.+.+++++.||. |.++.+.+-+.+....+|.+.
T Consensus 188 ~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP 261 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLP 261 (386)
T ss_pred ceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCC
Confidence 488999999888654222333444444433 34567899999994 567888887888777766654
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.41 E-value=0.037 Score=45.12 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
+..|.-+++.|+||+|||......+.+.... .+.+++|+.- .+-..++...+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~-E~~~~~~~~r~ 78 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISL-EEPVVRTARRL 78 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEc-ccCHHHHHHHH
Confidence 3556788999999999997554444443332 1446777653 22334444444
No 315
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.051 Score=47.03 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
....+++||||+|.+... ....+.++++.- ++++.+++ ++|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep-~~~~~fIL-~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEP-PPRTVWLL-CAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcC-CCCCeEEE-EECChHHC
Confidence 346789999999999765 334555555543 34444444 44434433
No 316
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.40 E-value=0.059 Score=49.88 Aligned_cols=126 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+-+++.|.-|-|||.+.-+.+........ +.+++|.+|+.+-++.+++-+.+-.+.+|.+............. ..
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~--~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~---~~ 306 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAG--SVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIRE---VS 306 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcC--CceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccceee---ec
Confidence 46889999999999987766643333221 45899999999999999888777777777653222211100000 01
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.....|=...|.... ..-+++|+|||=.+.= ..+.++...+ +.++||.|..
T Consensus 307 ~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIpl-------plL~~l~~~~-----~rv~~sTTIh 357 (758)
T COG1444 307 GDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIPL-------PLLHKLLRRF-----PRVLFSTTIH 357 (758)
T ss_pred CCceeEEeeCcchhc------------ccCCEEEEehhhcCCh-------HHHHHHHhhc-----CceEEEeeec
Confidence 122234455554321 1167999999976532 2344444322 5667777755
No 317
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.39 E-value=0.061 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=17.2
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
+..++.||+|+|||... ..+...+
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45799999999999754 3334444
No 318
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.38 E-value=0.012 Score=47.07 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=26.8
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC 88 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~ 88 (226)
..|.-+++.|+||+|||...+--+.+...+. +..++|++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEe
Confidence 3567789999999999976554455554421 44677776
No 319
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.053 Score=49.44 Aligned_cols=39 Identities=23% Similarity=0.102 Sum_probs=23.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEE
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMF 199 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~ 199 (226)
..+.+++||||+|.+... ....+...++.- ++.+.+++.
T Consensus 118 ~~~~kVvIIDEa~~L~~~----a~naLLk~LEep-p~~tv~Il~ 156 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA----AFNALLKTLEEP-PPHAIFILA 156 (585)
T ss_pred cCCeEEEEEeChHhCCHH----HHHHHHHHHhcC-CCCeEEEEE
Confidence 456789999999988654 333444444443 334444443
No 320
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.37 E-value=0.032 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.1
Q ss_pred cCCCCCeEEEECCCCchHhHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~ 67 (226)
.+..++++++.||+|+|||..+.
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHHH
Confidence 44568999999999999997654
No 321
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.039 Score=50.04 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=26.4
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
...+++|+||+|.+... ....+...++.- ++.+-+++++ +-+..+
T Consensus 118 ~~~KVIIIDEad~Lt~~----A~NaLLKtLEEP-p~~tvfIL~T-t~~~KL 162 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS----AWNALLKTLEEP-PKHVVFIFAT-TEFQKI 162 (605)
T ss_pred CCcEEEEEechHhCCHH----HHHHHHHHHHhC-CCcEEEEEEC-CChHhh
Confidence 35679999999988654 344555555543 3344455543 444333
No 322
>KOG4150|consensus
Probab=96.33 E-value=0.0014 Score=57.91 Aligned_cols=179 Identities=7% Similarity=-0.109 Sum_probs=108.9
Q ss_pred hhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh-
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE- 106 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~- 106 (226)
+.+--+.+..+|..+. .+.+|++.++...+.+||+++|............ ....++..|+.+++....+.+.-..+
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH--ATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc--ccceecchhHHHHhhccCCceEEEEEe
Confidence 3444445556665554 5677899999999999999999887766653322 23578999999998865442211111
Q ss_pred --cCC-CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHh--cCCCCCCCCCccEEEEcccccccccCccchHHH
Q psy12977 107 --GLG-LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQ--MDPPALNLANVEWLIVDESDKLFEAGVRGFRDQ 181 (226)
Q Consensus 107 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~--~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~ 181 (226)
..+ .-+.+..+..+... ......+..++.+.|........ +......+-...+.+.||+|......+......
T Consensus 358 I~~~K~A~V~~~D~~sE~~~--~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTK--SALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred hhhhhcceeecccCCCchhH--HHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 011 11223333332222 23345778899999998876542 222334455567899999997765432233344
Q ss_pred HHHHHHhc----CCCCceEEEEeeeCchhHHHHH
Q psy12977 182 LAVIYAAC----SGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 182 i~~i~~~~----~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
+.++.+.. .+.+.|++-.|||+.+.+...-
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~ 469 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRS 469 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHH
Confidence 44444333 3567899999999876654443
No 323
>PHA02533 17 large terminase protein; Provisional
Probab=96.33 E-value=0.034 Score=49.95 Aligned_cols=122 Identities=13% Similarity=-0.018 Sum_probs=69.8
Q ss_pred CCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE-
Q psy12977 36 FEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH- 113 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~- 113 (226)
+.|-|.... .+..++-.++..+-..|||......++...... .+..+.+++|+.+-|..+++.++.+.+..+....
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 344554443 222355567889999999988664443332212 2458999999999999999988877654332110
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
..... ....-.+.+++.|.+.|.+. ....=.+.+++++||+|.+.+
T Consensus 138 ~i~~~----~~~~I~l~NGS~I~~lss~~---------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 138 GIVEW----NKGSIELENGSKIGAYASSP---------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred ceeec----CccEEEeCCCCEEEEEeCCC---------CccCCCCCceEEEeccccCCC
Confidence 00000 01111124566666655431 112223567899999997643
No 324
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.074 Score=45.55 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=27.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+.+||||+|.+... ....+.+.++.- ++.+.++++|..
T Consensus 139 ~~~~kVviIDead~m~~~----aanaLLK~LEep-p~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN----AANALLKVLEEP-PARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH----HHHHHHHHHhcC-CCCeEEEEEECC
Confidence 456789999999988654 555566666553 345555554443
No 325
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.32 E-value=0.038 Score=43.20 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
..|.-+.+.||+|+|||...+..+.+.... +.+++|+.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 345678899999999998665555444432 4477777654
No 326
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.049 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.3
Q ss_pred CeEEEECCCCchHhHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~ 69 (226)
+.+++.||.|+|||......
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 56799999999999865443
No 327
>KOG0058|consensus
Probab=96.23 E-value=0.022 Score=51.99 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=69.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
-+..|+.+-+.||+|+|||.+ ..++.+++++... =|+..-..+-+--...+.+.....+..-..+.++-.+..
T Consensus 490 ti~pGe~vALVGPSGsGKSTi--asLL~rfY~PtsG----~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI- 562 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTI--ASLLLRFYDPTSG----RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENI- 562 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHH--HHHHHHhcCCCCC----eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHH-
Confidence 345578899999999999976 5667777654333 344455444443334444433333333233332211111
Q ss_pred hCCCcCCCCCEEEECchHHHH---------hHhcCCCCC------------------------CCCCccEEEEccccccc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVY---------LLQMDPPAL------------------------NLANVEWLIVDESDKLF 171 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~---------~~~~~~~~~------------------------~~~~~~~lViDE~h~l~ 171 (226)
..+.+ -+|.+.+.+ ++...+... -+.+-+.+|+|||-..+
T Consensus 563 -----~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 563 -----AYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred -----hcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 11111 222222221 111111111 16677899999999999
Q ss_pred ccCccchHHHHHHHHHhcC
Q psy12977 172 EAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 172 ~~~~~~~~~~i~~i~~~~~ 190 (226)
|. .....+++.+..+.
T Consensus 636 Da---eSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 636 DA---ESEYLVQEALDRLM 651 (716)
T ss_pred ch---hhHHHHHHHHHHhh
Confidence 98 67777887777663
No 328
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.20 E-value=0.051 Score=48.94 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc-CCCeEEEEecchhhhhhhC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG-LGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 126 (226)
..+-.+.--|--.|||| ++.|++..+.. .-.+.++.|++.-+..++-+++++...... ++.+.....
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~-s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~---------- 268 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLK-NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN---------- 268 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHH-hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee----------
Confidence 34556677788999998 56777666653 345779999999999998888776544332 122211111
Q ss_pred CCcCCCCCEEEECchHHHH---hHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 127 PRSAQKFDVLITTPNKLVY---LLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~---~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
++--|.+.-|+.=.. ....+...+.-.+.+++++||||-+-.. .+..++-.+.-.++++++.|.|.
T Consensus 269 ----k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~-------a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 269 ----KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKD-------AFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ----cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHH-------HHHHhhhhhcccCceEEEEeCCC
Confidence 111233333321100 1112224566778899999999976443 44455555556789999999985
Q ss_pred c
Q psy12977 204 T 204 (226)
Q Consensus 204 ~ 204 (226)
.
T Consensus 338 s 338 (668)
T PHA03372 338 T 338 (668)
T ss_pred C
Confidence 4
No 329
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.052 Score=47.84 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=25.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+.+++|+||+|.+... ....+.+.++.- ++.+.+++.+
T Consensus 119 ~~~~kvvIIdead~lt~~----~~n~LLk~lEep-~~~~~~Il~t 158 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKE----AFNSLLKTLEEP-PQHVKFFLAT 158 (451)
T ss_pred cCCCEEEEEecHHhhCHH----HHHHHHHHhhcC-CCCceEEEEe
Confidence 356789999999988654 334455555543 3455555544
No 330
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.08 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=24.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+-+++||||+|.+... ....+...++.- ++.+-+++.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~----a~naLLK~LEeP-p~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA----AFNAFLKTLEEP-PPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHH----HHHHHHHHHhCC-CCCeEEEEEe
Confidence 456789999999998654 234444444443 2344455544
No 331
>KOG0742|consensus
Probab=96.18 E-value=0.011 Score=50.63 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+|++..+|+|+|||...
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 78999999999999853
No 332
>KOG0741|consensus
Probab=96.17 E-value=0.06 Score=47.76 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=30.8
Q ss_pred CccEEEEcccccccccC---cc---chHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 158 NVEWLIVDESDKLFEAG---VR---GFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~---~~---~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
.+.++|+|+..+++|+- .| ...+.+..+++..|+...+++.+.-|=..++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 56799999999998863 11 2334555556666555566666655544444
No 333
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.047 Score=46.05 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=27.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....+.+||||+|.|... ....+.++++.- ++++.+++.|
T Consensus 104 ~~~~kv~iI~~a~~m~~~----aaNaLLK~LEEP-p~~~~fiL~t 143 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRN----AANALLKSLEEP-SGDTVLLLIS 143 (328)
T ss_pred cCCCeEEEECChhhCCHH----HHHHHHHHHhCC-CCCeEEEEEE
Confidence 456789999999999776 555555666663 4455555544
No 334
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.12 E-value=0.046 Score=45.36 Aligned_cols=17 Identities=29% Similarity=0.512 Sum_probs=14.6
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999754
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.11 E-value=0.33 Score=39.86 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=17.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPII 71 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~ 71 (226)
.+-+.+.+|+|+|||....--+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35677889999999986554443
No 336
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.093 Score=48.07 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=26.3
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....+++||||+|.+... ....+..+++.- +..+-+++.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~----a~naLLK~LEep-p~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA----AFNAFLKTLEEP-PSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHH----HHHHHHHHHhCC-CCCeEEEEEe
Confidence 457889999999998664 445566666654 3444455533
No 337
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.25 Score=43.80 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
.++-+.+.||||+|||.....-+....... ....-+++-+.+..++ ..+.++.+.+..+..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv 316 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIG--GHEQLRIYGKILGVPV 316 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCe
Confidence 456788999999999987554333322211 1111234444442222 2455566665555544
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.09 E-value=0.2 Score=43.79 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=29.4
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHh
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRK 214 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~ 214 (226)
..+++++|=+-+.-.. ......+..+.+.. .+..-++.++|+...+..+.++.|
T Consensus 182 ~~DvViIDTaGr~~~d--~~lm~El~~i~~~~-~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE--DSLFEEMLQVAEAI-QPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcch--HHHHHHHHHHhhhc-CCcEEEEEeccccChhHHHHHHHH
Confidence 4567777777544322 13555555555444 344455666777665555555444
No 339
>PHA00729 NTP-binding motif containing protein
Probab=96.08 E-value=0.063 Score=42.68 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred EEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHH-----HHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 135 VLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRD-----QLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 135 IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~-----~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
.++.+.+.+.+.+.. ..-...+.+++|+||+-..... ..+. ....+...+ ...++++.+...-|+++..
T Consensus 61 ~~fid~~~Ll~~L~~--a~~~~~~~dlLIIDd~G~~~~~---~~wh~~~~~~yf~L~~aL-rSR~~l~il~~ls~edL~~ 134 (226)
T PHA00729 61 SYFFELPDALEKIQD--AIDNDYRIPLIIFDDAGIWLSK---YVWYEDYMKTFYKIYALI-RTRVSAVIFTTPSPEDLAF 134 (226)
T ss_pred EEEEEHHHHHHHHHH--HHhcCCCCCEEEEeCCchhhcc---cchhhhccchHHHHHHHH-HhhCcEEEEecCCHHHHHH
Confidence 344444445544432 1111235678999995433332 1111 112222222 2456777777777788877
Q ss_pred HHHHhc
Q psy12977 210 WCRRKL 215 (226)
Q Consensus 210 ~~~~~~ 215 (226)
.++..-
T Consensus 135 ~Lr~Rg 140 (226)
T PHA00729 135 YLREKG 140 (226)
T ss_pred HHHhCC
Confidence 776643
No 340
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.05 E-value=0.014 Score=52.28 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=46.7
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcC--CCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRG--PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~--~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
...++-++|+|..|||||.+++.-+...+.. .......++++.|++-..+-+...+-+++..
T Consensus 223 ~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 223 FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 3456779999999999999887655444422 2222344999999999999999998888654
No 341
>KOG2028|consensus
Probab=96.04 E-value=0.026 Score=47.83 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=33.0
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.+++++|+|+|||..+-+-+.. .+..+-+.|=+..|.+-+..+...+++.
T Consensus 164 SmIlWGppG~GKTtlArlia~t----sk~~SyrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST----SKKHSYRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh----cCCCceEEEEEeccccchHHHHHHHHHH
Confidence 5899999999999754332211 2223457777888877777766655444
No 342
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.04 E-value=0.24 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=16.7
Q ss_pred eEEEECCCCchHhHHHHHHHHH
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIH 72 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~ 72 (226)
.+++.|++|+|||....--+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999875544433
No 343
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.99 E-value=0.039 Score=53.77 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=40.5
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch-hHHHHHHHhcCCCeEEecC
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE-DVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~-~~~~~~~~~~~~p~~i~~~ 224 (226)
-+|||||+..++..........+.++.+.-..-...+++.|..+.. .+...++..+...+...+.
T Consensus 1142 IVVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVs 1207 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVS 1207 (1355)
T ss_pred EEEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcC
Confidence 3899999987765432334455666665554556677776666553 3455677777666655543
No 344
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.99 E-value=0.099 Score=46.68 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.5
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999854
No 345
>PRK09087 hypothetical protein; Validated
Probab=95.98 E-value=0.047 Score=43.52 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=34.1
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH---HHHHhcCCCeEEecC
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK---WCRRKLKRRVQINVG 224 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~---~~~~~~~~p~~i~~~ 224 (226)
+++++||+|.+.. ....+..++..+...+.++++.|.+.|++... -+...+.....++++
T Consensus 89 ~~l~iDDi~~~~~-----~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGF-----DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCC-----CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 3899999997632 23445666655544567777766666654322 233444444555443
No 346
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.1 Score=47.28 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=25.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+.+++|+||+|.+... ....+...++.- ++.+-+++ .+|-+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~----a~naLLK~LEep-p~~~vfI~-~tte~~ 160 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS----AFNALLKTIEEP-PPYIVFIF-ATTEVH 160 (563)
T ss_pred cCCCEEEEEEChhhcCHH----HHHHHHHhhccC-CCCEEEEE-ecCChH
Confidence 457789999999988654 334444445442 33444444 334333
No 347
>KOG1001|consensus
Probab=95.94 E-value=0.091 Score=48.45 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=68.7
Q ss_pred eEEEECCCCchHhHHHHHHHHH-HhcCC----CCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIH-SLRGP----KNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~-~~~~~----~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
--|+.-.-|-|||...+..++. ..... .......+++||+ ++..|+..++.+..+.....+...+| ...
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~k---- 227 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTK---- 227 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-ccc----
Confidence 3577888899999876544333 23221 1234567888887 47788888775555544455555555 111
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
........+++++|++.+... . +..-..-.+|+||+|.+...
T Consensus 228 d~~el~~~dVVltTy~il~~~-----~-l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 228 DKSELNSYDVVLTTYDILKNS-----P-LVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccchhcCCceEEeeHHHhhcc-----c-ccceeEEEEEeccccccCCc
Confidence 112335677999999887641 1 11234558999999988765
No 348
>KOG1015|consensus
Probab=95.93 E-value=0.044 Score=51.60 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC----CeEEEEecchhhhhh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG----LRAHVIGKIQQAAEK 124 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 124 (226)
|.-.|+.---|-|||+-.+..+.-.+......-.+++|++|-. .+..|++.|..+...+. +.+..+........+
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlN-t~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R 774 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLN-TALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEER 774 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchH-HHHHHHHHHHHhcccccccccceeehhhhccChHHH
Confidence 3445666667889997643332222333334456899999986 56789999999987532 333333322221111
Q ss_pred ---hCCCcCCCCCEEEECchHHHHhHhcCC-----------CCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 125 ---FGPRSAQKFDVLITTPNKLVYLLQMDP-----------PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 125 ---~~~~~~~~~~IiV~Tp~~l~~~~~~~~-----------~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
+..+...+ .|.|.-...+..+..... ..+.-..-++||.||+|.+-... .....++..+...
T Consensus 775 ~~~L~~W~~~g-gVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNek-sa~Skam~~irtk-- 850 (1567)
T KOG1015|consen 775 SYMLQRWQEDG-GVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEK-SAVSKAMNSIRTK-- 850 (1567)
T ss_pred HHHHHHHHhcC-CEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccch-HHHHHHHHHHHhh--
Confidence 11122233 344444444433332110 11223456899999999775432 1344555555532
Q ss_pred CCCceEEEEeeeC
Q psy12977 191 GPNLKRGMFSATH 203 (226)
Q Consensus 191 ~~~~q~v~~SAT~ 203 (226)
+.|.+|.|+
T Consensus 851 ----RRI~LTGTP 859 (1567)
T KOG1015|consen 851 ----RRIILTGTP 859 (1567)
T ss_pred ----eeEEeecCc
Confidence 345557773
No 349
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.92 E-value=0.12 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
..+.++.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997654
No 350
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.89 E-value=0.08 Score=47.09 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=78.1
Q ss_pred eEEEECCCCchHhHHHH-HHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 51 QIFACAPTGSGKTAAFL-IPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~-~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
.++|..|-+-|||.... +.+...+.. ...+.+..+++|+.+-+.+.+..++.+..... .. ....+..
T Consensus 88 e~fI~v~RkngKt~l~A~i~~~~~l~~-~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~-~l----------~~~~~~q 155 (546)
T COG4626 88 EAFIFIPRKNGKSTLAAGIMMTALLLN-WRSGAGIYILAPSVEQAANSFNPARDMVKRDD-DL----------RDLCNVQ 155 (546)
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHhh-hhcCCcEEEEeccHHHHHHhhHHHHHHHHhCc-ch----------hhhhccc
Confidence 47899999999996544 444444432 24566899999999999999998888866544 00 0000000
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc-CCCCceEEEEee
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC-SGPNLKRGMFSA 201 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~-~~~~~q~v~~SA 201 (226)
.....|...-.......+.......+-.+..+.|+||.|..... + ..+..+...+ ..++.+++..|-
T Consensus 156 ~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~---~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 156 THSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ---E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred cceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH---H--HHHHHHHhhhccCcCceEEEEec
Confidence 01111222222333333344445566667789999999977654 1 3344343333 235666666543
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.073 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.3
Q ss_pred EEEECCCCchHhHHHHHH
Q psy12977 52 IFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~ 69 (226)
+++.|++|+|||.....-
T Consensus 3 ~~~~G~~G~GKTt~~~~l 20 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKL 20 (173)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999865433
No 352
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.88 E-value=0.037 Score=55.33 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=71.4
Q ss_pred cCCCCcccccc-cCC--CCCeEEEECCCCchHhHHHH--HHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 34 KHFEPHFTITY-LSP--LGRQIFACAPTGSGKTAAFL--IPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~--~~~~~li~apTGsGKT~~~~--~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
..+++-|..+. .++ .++-++++|..|+|||...- ..++..+. ...+.+++.++||..-+....+ .
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~--e~~g~~V~glAPTgkAa~~L~e----~---- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP--ESERPRVVGLGPTHRAVGEMRS----A---- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh--hccCceEEEEechHHHHHHHHH----h----
Confidence 46888887774 333 34678999999999997632 22233221 2234578889999876665432 1
Q ss_pred CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHh--cCCCCCCCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQ--MDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~--~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
++... |-.+|+.... ...........+++||||+-.+... .+..++
T Consensus 904 Gi~A~-------------------------TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~~-------~m~~ll 951 (1623)
T PRK14712 904 GVDAQ-------------------------TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNT-------DMARAY 951 (1623)
T ss_pred CchHh-------------------------hHHHHhccccchhhcccCCCCCCcEEEEEccccccHH-------HHHHHH
Confidence 22110 1111111000 0001122234689999999865433 444455
Q ss_pred HhcCCCCceEEEEeee
Q psy12977 187 AACSGPNLKRGMFSAT 202 (226)
Q Consensus 187 ~~~~~~~~q~v~~SAT 202 (226)
+.+.....+++++.-+
T Consensus 952 ~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 952 ALIAAGGGRAVASGDT 967 (1623)
T ss_pred HhhhhCCCEEEEEcch
Confidence 5553456888888766
No 353
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.83 E-value=0.054 Score=50.69 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.4
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
..++++.||+|+|||.....
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999986433
No 354
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.83 E-value=0.049 Score=43.14 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.|.-+++.|++|+|||...+..+...+.+ +.+++|+.. .+-.+++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEEC-CCCHHHHHHHHHHc
Confidence 46778999999999997554445554442 446777654 44566666666555
No 355
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.82 E-value=0.075 Score=44.60 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=28.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~ 95 (226)
|+-+.+.+|+|+|||...+..+.+.... +.+++|+-.-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchhHH
Confidence 4668899999999998665555554432 457777755444433
No 356
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.81 E-value=0.15 Score=46.25 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
+.+-+++|+||+-.-+|. .....+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~---~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDT---ETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCH---HhHHHHHHHHHHHh
Confidence 556689999999999988 57777777776663
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.78 E-value=0.1 Score=44.86 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
|.-+++.+++|+|||...+..+..... .+.+++|+.-. +-..|+.....++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK----RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 566899999999999865444333332 23477887643 3445555444443
No 358
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.78 E-value=0.085 Score=44.43 Aligned_cols=110 Identities=19% Similarity=0.137 Sum_probs=70.3
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
+-+-++|+-|.|||+. +=..++.+.-+. + .-++..+-+.++.+.+..+-+. .
T Consensus 66 ~GlYl~GgVGrGKT~L-MD~Fy~~lp~~~--k----~R~HFh~FM~~vH~~l~~l~g~---~------------------ 117 (367)
T COG1485 66 RGLYLWGGVGRGKTML-MDLFYESLPGER--K----RRLHFHRFMARVHQRLHTLQGQ---T------------------ 117 (367)
T ss_pred ceEEEECCCCccHHHH-HHHHHhhCCccc--c----ccccHHHHHHHHHHHHHHHcCC---C------------------
Confidence 6789999999999974 223344443211 1 1246677888888877776411 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
|.+ +....++ ..+.+.|.+||++ +.|- +-.--+.++++.+.+.++.++..|.|.|+++
T Consensus 118 ----dpl---~~iA~~~---------~~~~~vLCfDEF~-VtDI---~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 ----DPL---PPIADEL---------AAETRVLCFDEFE-VTDI---ADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ----Ccc---HHHHHHH---------HhcCCEEEeeeee-ecCh---HHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 000 1111122 3356799999999 4443 3444666778888788999999999999764
No 359
>KOG0298|consensus
Probab=95.78 E-value=0.058 Score=52.09 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=89.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC--------------CCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG--------------PKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL 110 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~--------------~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~ 110 (226)
....|+++++.-.-|.|||..-+...+..... +.....-++|++|. ++-.||++++..-.... .
T Consensus 370 ~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-l 447 (1394)
T KOG0298|consen 370 DKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-L 447 (1394)
T ss_pred CccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-c
Confidence 34557888999999999998866554433211 11113468999998 67799999988877654 5
Q ss_pred eEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCC------------CCCC----CCCcc--EEEEcccccccc
Q psy12977 111 RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDP------------PALN----LANVE--WLIVDESDKLFE 172 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~------------~~~~----~~~~~--~lViDE~h~l~~ 172 (226)
++...-|..+..... ......+|||+||-..+..-+.... +..+ +..+. -+++|||+.+-.
T Consensus 448 Kv~~Y~Girk~~~~~-~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLS-PFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred eEEEEechhhhcccC-chhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 555554443222111 2344678999999999887653320 1111 11111 579999996543
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
. ..+..++...+ +..-.=.+|.|+=
T Consensus 527 s-----sS~~a~M~~rL--~~in~W~VTGTPi 551 (1394)
T KOG0298|consen 527 S-----SSAAAEMVRRL--HAINRWCVTGTPI 551 (1394)
T ss_pred h-----HHHHHHHHHHh--hhhceeeecCCch
Confidence 2 23333444444 3444556778843
No 360
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.77 E-value=0.084 Score=54.44 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCCCcccccc--cCCC-CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe
Q psy12977 35 HFEPHFTITY--LSPL-GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111 (226)
Q Consensus 35 ~~~~~Q~~~~--~~~~-~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~ 111 (226)
.+++-|..+. .+.+ .+-.+++|+.|+|||... -.+...+.. .+.+++.++||..-+.+..+.. +..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~~-------g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE---QGYEIQIITAGSLSAQELRQKI-------PRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHh-------cch
Confidence 3556665553 2223 366899999999999753 334444433 3568999999987666655432 111
Q ss_pred EEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCC
Q psy12977 112 AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG 191 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~ 191 (226)
...+. ..... .. .. .-..|...+. . ...++..-++|||||+-.+... .+..+++....
T Consensus 498 A~Ti~------~~l~~-l~-~~-~~~~tv~~fl---~---~~~~l~~~~vlIVDEAsMl~~~-------~~~~Ll~~a~~ 555 (1960)
T TIGR02760 498 ASTFI------TWVKN-LF-ND-DQDHTVQGLL---D---KSSPFSNKDIFVVDEANKLSNN-------ELLKLIDKAEQ 555 (1960)
T ss_pred hhhHH------HHHHh-hc-cc-ccchhHHHhh---c---ccCCCCCCCEEEEECCCCCCHH-------HHHHHHHHHhh
Confidence 00000 00000 00 00 0011222222 1 2233567789999999965333 45555555545
Q ss_pred CCceEEEEeee
Q psy12977 192 PNLKRGMFSAT 202 (226)
Q Consensus 192 ~~~q~v~~SAT 202 (226)
.+.+++++.=+
T Consensus 556 ~garvVlvGD~ 566 (1960)
T TIGR02760 556 HNSKLILLNDS 566 (1960)
T ss_pred cCCEEEEEcCh
Confidence 67899988766
No 361
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.76 E-value=0.049 Score=42.14 Aligned_cols=148 Identities=12% Similarity=0.010 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH-HHHHHHHHHhhcCCCeEEEEecchhhhhhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK-QTYNETVRLSEGLGLRAHVIGKIQQAAEKF 125 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (226)
..+.++.+..++|.|||.+.+--++..+.. +.+++++-=.+--.. --...++.+ .++.......+-. +
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~----G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~----~ 88 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH----GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFT----W 88 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC----CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCc----c
Confidence 355789999999999999887777776653 557777754443211 111222221 1232222221100 0
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
. ....+--.......++... ..+.-...++||+||+-..++.+.- ..+.+..+++.. ++..-+|+..-..|+
T Consensus 89 ~---~~~~~e~~~~~~~~~~~a~---~~l~~~~ydlvVLDEi~~Al~~gli-~~eevi~~L~~r-p~~~evVlTGR~~p~ 160 (191)
T PRK05986 89 E---TQDRERDIAAAREGWEEAK---RMLADESYDLVVLDELTYALKYGYL-DVEEVLEALNAR-PGMQHVVITGRGAPR 160 (191)
T ss_pred c---CCCcHHHHHHHHHHHHHHH---HHHhCCCCCEEEEehhhHHHHCCCc-cHHHHHHHHHcC-CCCCEEEEECCCCCH
Confidence 0 0000000001111122222 2344567899999999988776432 344566666654 567778887777888
Q ss_pred hHHHHHHH
Q psy12977 206 DVAKWCRR 213 (226)
Q Consensus 206 ~~~~~~~~ 213 (226)
++.+.+..
T Consensus 161 ~Lie~ADl 168 (191)
T PRK05986 161 ELIEAADL 168 (191)
T ss_pred HHHHhCch
Confidence 88777644
No 362
>KOG0733|consensus
Probab=95.76 E-value=0.04 Score=49.56 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=32.4
Q ss_pred CCCccEEEEcccccccccCc----cchHHHHHHHHHhcC--CCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGV----RGFRDQLAVIYAACS--GPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~----~~~~~~i~~i~~~~~--~~~~q~v~~SAT~~~~~ 207 (226)
.+.-..+.+||+|.+..... ......+.+++..+- ..+.++..+.||.-+++
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 44556889999998864321 123445555555551 35678888889955443
No 363
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.76 E-value=0.053 Score=48.69 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK 117 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 117 (226)
..|+-+.+.||+|+|||.. +-++..+..+... =|.....++.+- .+.+++...+...+...+.+
T Consensus 359 ~~G~~vaIvG~SGsGKSTL--l~lL~g~~~p~~G----~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~ 422 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTL--LMLLTGLLDPLQG----EVTLDGVSVSSL-QDELRRRISVFAQDAHLFDT 422 (529)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCCCCCCc----EEEECCEEhhhH-HHHHHhheEEEccCcccccc
Confidence 4578899999999999964 3333344322221 233455555443 44455444444444333333
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.75 E-value=0.21 Score=37.93 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=64.5
Q ss_pred EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCC
Q psy12977 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQ 131 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (226)
+++.|++|||||....--+.. .+.+++|+......-..+.+.+...-+.-+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w------------------- 55 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAERIARHRKRRPAHW------------------- 55 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCc-------------------
Confidence 578999999999754433322 234788998887776666665554322111111
Q ss_pred CCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc--------cchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 132 KFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV--------RGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 132 ~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~--------~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+-.|..+.+.+... +.-+.+++|=...+..... ......+..+++.+.....-+++.|.-
T Consensus 56 ---~t~E~~~~l~~~l~~~------~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnE 125 (169)
T cd00544 56 ---RTIETPRDLVSALKEL------DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNE 125 (169)
T ss_pred ---eEeecHHHHHHHHHhc------CCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 2234455555554331 1344677777665443210 012345555666664556667777765
No 365
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.74 E-value=0.085 Score=42.83 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
+..+++.||+|+|||....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3468999999999998654
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.73 E-value=0.062 Score=47.83 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
..|.-+++.+|||+|||...+.-+...+.+ +.+++|++ ..|-..|+...++.+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~----ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACAN----KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345779999999999998665555555542 45778865 6667777777776663
No 367
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.72 E-value=0.071 Score=49.94 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
..|+++.||+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45899999999999986533
No 368
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.72 E-value=0.072 Score=53.95 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=71.9
Q ss_pred cCCCCcccccc-cCCC--CCeEEEECCCCchHhHHHHHHHHHHhcC-CCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 34 KHFEPHFTITY-LSPL--GRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~~--~~~~li~apTGsGKT~~~~~~~~~~~~~-~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
..+++-|..+. .++. ++-++++|..|+|||... -.+...+.. ....+.+++.++||..-+.++.+ .+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e--------~G 1036 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS--------AG 1036 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHHh--------cC
Confidence 46788887664 3333 467899999999999763 223333321 12234578889999876665432 12
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHh--cCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHH
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQ--MDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYA 187 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~--~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~ 187 (226)
... .|-.+++.... ...+......-+++||||+-.+... .+..+++
T Consensus 1037 i~A-------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~-------~m~~Ll~ 1084 (1747)
T PRK13709 1037 VDA-------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNT-------DMARAYA 1084 (1747)
T ss_pred cch-------------------------hhHHHHhcccccccccccCCCCCCcEEEEEccccccHH-------HHHHHHH
Confidence 221 12222211100 0001112234589999999865333 4555555
Q ss_pred hcCCCCceEEEEeee
Q psy12977 188 ACSGPNLKRGMFSAT 202 (226)
Q Consensus 188 ~~~~~~~q~v~~SAT 202 (226)
......+++|++.=+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 554457889988766
No 369
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.35 Score=42.12 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=32.7
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCC--CCceEEEEeeeCch-hHHHHHHHhc
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG--PNLKRGMFSATHTE-DVAKWCRRKL 215 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~--~~~q~v~~SAT~~~-~~~~~~~~~~ 215 (226)
.+.++++||=+-...... .....+..+.+.... +.--++.+|||... ++.+.++.|-
T Consensus 298 ~~~D~VLIDTaGr~~rd~--~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL--EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCccCH--HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 356889999765442211 355555555554411 22345677888665 6666666653
No 370
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.015 Score=47.97 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=21.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKN 79 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~ 79 (226)
.=++|.||||||||... .++++.+.+...
T Consensus 126 GLILVTGpTGSGKSTTl-AamId~iN~~~~ 154 (353)
T COG2805 126 GLILVTGPTGSGKSTTL-AAMIDYINKHKA 154 (353)
T ss_pred ceEEEeCCCCCcHHHHH-HHHHHHHhccCC
Confidence 34899999999999853 567777765433
No 371
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.18 Score=42.40 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
....+.+||||+|.|... ....+.++++. |++++.+++.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~----AaNaLLKtLEE-Pp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA----AANALLKTLEE-PRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH----HHHHHHHHhcC-CCCCeEEEEEEC
Confidence 456789999999999865 55566666666 355555555543
No 372
>PRK10867 signal recognition particle protein; Provisional
Probab=95.71 E-value=0.28 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.6
Q ss_pred CeEEEECCCCchHhHHHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIPII 71 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~ 71 (226)
.-+++.|++|+|||....--+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999987554433
No 373
>KOG0740|consensus
Probab=95.70 E-value=0.04 Score=47.73 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=41.6
Q ss_pred CccEEEEcccccccccC----ccchHH-HHHHHHHhc---CCCCceEEEEeee-CchhHHHHHHHhcCCCeEEec
Q psy12977 158 NVEWLIVDESDKLFEAG----VRGFRD-QLAVIYAAC---SGPNLKRGMFSAT-HTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~----~~~~~~-~i~~i~~~~---~~~~~q~v~~SAT-~~~~~~~~~~~~~~~p~~i~~ 223 (226)
...+++|||+|.++... ++.... ..+.++... ..+..++++++|| .|.++.+-+.+.+...++|-.
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yipl 319 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPL 319 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecC
Confidence 44577799999887542 111211 222222221 2456689999999 888999988888877766543
No 374
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.69 E-value=0.13 Score=49.00 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
..++++.||+|+|||.....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 35899999999999986543
No 375
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.67 E-value=0.099 Score=39.29 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH---HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE---LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~---L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
-+.+-.++|.|||.+.+--++..+.. +.+++++-=.+. -.+ ...++.+. ++.......+. .+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~----g~~v~~vQFlKg~~~~gE--~~~l~~l~---~v~~~~~g~~~----~~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH----GYRVGVVQFLKGGWKYGE--LKALERLP---NIEIHRMGRGF----FWTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEEeCCCCccCH--HHHHHhCC---CcEEEECCCCC----ccCC
Confidence 35677888999999887777766653 557777443332 112 12233331 33332222110 0000
Q ss_pred CcCCCCCEEEECch---HHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 128 RSAQKFDVLITTPN---KLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~---~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
. + .++ .....+......+.....+++|+||+=..++.+. --.+.+..+++.. ++..-+|+.+-..|
T Consensus 71 ---~--~----~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gl-i~~~~v~~ll~~r-p~~~evIlTGr~~p 139 (159)
T cd00561 71 ---E--N----DEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGL-LDVEEVVDLLKAK-PEDLELVLTGRNAP 139 (159)
T ss_pred ---C--C----hHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCC-CCHHHHHHHHHcC-CCCCEEEEECCCCC
Confidence 0 0 111 1111111111233456789999999987766532 2455666777666 56778888777788
Q ss_pred hhHHHHHH
Q psy12977 205 EDVAKWCR 212 (226)
Q Consensus 205 ~~~~~~~~ 212 (226)
+++.+.+.
T Consensus 140 ~~l~e~AD 147 (159)
T cd00561 140 KELIEAAD 147 (159)
T ss_pred HHHHHhCc
Confidence 88877764
No 376
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.60 E-value=0.24 Score=39.09 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTR 91 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~ 91 (226)
..|+-+.+.||+|+|||...+..+....... .....+++|+....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4567789999999999986554444433321 01124678877643
No 377
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.13 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=17.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
+.+++.||+|+|||..... +...+
T Consensus 40 ~~~L~~G~~G~GKt~~a~~-la~~l 63 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI-LARKI 63 (367)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Confidence 5788999999999975433 34444
No 378
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.088 Score=48.81 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
..+.+++|+||+|.+... ....+...++.- ++.+.+++. +|-++.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~----A~NALLKtLEEP-P~~tifILa-Tte~~KL 161 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS----AFNALLKTLEEP-PKHVIFILA-TTEVHKI 161 (725)
T ss_pred cCCCEEEEEEChhhCCHH----HHHHHHHHhhcC-CCceEEEEE-cCChhhh
Confidence 457789999999988654 344555555543 344555554 3444333
No 379
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.55 E-value=0.073 Score=42.16 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
..|.-+.+.|++|+|||...+..+.+.... +.+++|+.--
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 346778999999999997655544444432 4467776543
No 380
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.54 E-value=0.078 Score=40.39 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=75.4
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH-HHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK-QTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
.-+.+..++|.|||.+.+--++..+.. +.+++++-=.+.-.. --.+.+..+ +..+.....+-. +.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~----g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~----~~-- 71 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH----GKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFT----WE-- 71 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC----CCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCe----ec--
Confidence 346788889999999887766666643 557776643332100 001112221 333222221100 00
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHH
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVA 208 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~ 208 (226)
..+.+ -......+.+..-...+.-...++||+||+-..++.+.- ..+.+..+++.. ++..-+|+..-..|+++.
T Consensus 72 -~~~~~---~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli-~~~~v~~lL~~r-p~~~evVlTGR~~p~~l~ 145 (173)
T TIGR00708 72 -TQNRE---ADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYL-DVEEVVEALQER-PGHQHVIITGRGCPQDLL 145 (173)
T ss_pred -CCCcH---HHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCc-CHHHHHHHHHhC-CCCCEEEEECCCCCHHHH
Confidence 00000 000111122221112333467899999999877776432 334566666665 567788887777888887
Q ss_pred HHHHH
Q psy12977 209 KWCRR 213 (226)
Q Consensus 209 ~~~~~ 213 (226)
+++..
T Consensus 146 e~AD~ 150 (173)
T TIGR00708 146 ELADL 150 (173)
T ss_pred HhCce
Confidence 77643
No 381
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.54 E-value=0.024 Score=47.61 Aligned_cols=48 Identities=27% Similarity=0.215 Sum_probs=33.2
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
....+++++++|+||||||.. +..++..+... ..+.+++.+-.+.||.
T Consensus 140 ~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-~~~~rivtiEd~~El~ 187 (323)
T PRK13833 140 AIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-CCCceEEEecCCcccc
Confidence 445578999999999999974 35566665321 2234788887777763
No 382
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=95.50 E-value=0.13 Score=49.09 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=45.2
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
-++|+||++.+....+......+.++.+.-......+++.|.-+..++..-++..++..+...+
T Consensus 641 iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ikanipsrIaf~v 704 (858)
T COG1674 641 IVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKANIPTRIALRL 704 (858)
T ss_pred EEEEEcchHHHhhhhhHHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHhCCcceEEEEE
Confidence 4899999998887654456777888877766667788886655666565557777766555444
No 383
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.21 Score=41.94 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+++|||++|.|... ....+.+++++ |++++.+++.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~----AaNaLLKtLEE-Pp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES----ASNALLKTLEE-PAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH----HHHHHHHHhcC-CCCCeEEEEEECC
Confidence 456889999999999765 55566666666 3455556655443
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.47 E-value=0.034 Score=46.28 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
....+++++++|+||||||.. +..++..+... ....+++.+-.+.|+.
T Consensus 128 ~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 128 AVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhhc
Confidence 344678999999999999974 35566665431 2244788888887763
No 385
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.45 E-value=0.018 Score=48.80 Aligned_cols=45 Identities=29% Similarity=0.349 Sum_probs=31.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
....++++++.||||||||.. +..++..+.. ..+.+.+-.+.|+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~----~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP----QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC----CCCEEEECCCcccc
Confidence 335679999999999999974 3555555532 34677777777664
No 386
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.42 E-value=0.055 Score=55.69 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=70.6
Q ss_pred cCCCCcccccc-cCCC--CCeEEEECCCCchHhHHHH---HHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 34 KHFEPHFTITY-LSPL--GRQIFACAPTGSGKTAAFL---IPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~~--~~~~li~apTGsGKT~~~~---~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
..+++-|..+. .++. ++-++++|+.|+|||.... -++...+.. .+.+++.++||..-+.+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L~~-------- 1086 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGELKS-------- 1086 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHh--------
Confidence 46788887774 3333 4567899999999997652 223333332 25578889999766655432
Q ss_pred CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHH
Q psy12977 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYA 187 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~ 187 (226)
.+.... |-.+++.........-.....+++|+||+-.+.. ..+..+++
T Consensus 1087 ~g~~a~-------------------------Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~-------~~~~~l~~ 1134 (1960)
T TIGR02760 1087 AGVQAQ-------------------------TLDSFLTDISLYRNSGGDFRNTLFILDESSMVSN-------FQLTHATE 1134 (1960)
T ss_pred cCCchH-------------------------hHHHHhcCcccccccCCCCcccEEEEEccccccH-------HHHHHHHH
Confidence 122210 1111111000000111244568999999985533 34555555
Q ss_pred hcCCCCceEEEEeee
Q psy12977 188 ACSGPNLKRGMFSAT 202 (226)
Q Consensus 188 ~~~~~~~q~v~~SAT 202 (226)
.......+++++.-+
T Consensus 1135 ~~~~~~ak~vlvGD~ 1149 (1960)
T TIGR02760 1135 LVQKSGSRAVSLGDI 1149 (1960)
T ss_pred hccCCCCEEEEeCCh
Confidence 544556788877655
No 387
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.40 E-value=0.6 Score=39.29 Aligned_cols=147 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH---HHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY---NETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
++.++.|+|||......++..+..... ...+++...+.++...+. ..+..+... ........... .. ...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~--~~~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWND---RK--IIL 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-S---SE--EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCC---Cc--EEe
Confidence 467899999999877766666543322 235666644444444432 333344333 12222110000 00 011
Q ss_pred CCCCCEEEECchHH--HHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee--Cch
Q psy12977 130 AQKFDVLITTPNKL--VYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTE 205 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l--~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT--~~~ 205 (226)
.+++.|.+.+-+.- ..-+. =...+++++||+-.+.+. .+...+....... .....++.|.+ ...
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~-------G~~~~~i~iDE~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIR-------GFEYDLIIIDEAAKVPDD---AFSELIRRLRATW--GGSIRMYISTPPNPGG 141 (384)
T ss_dssp TTS-EEEEES-----SHHHHH-------TS--SEEEEESGGGSTTH---HHHHHHHHHHHCS--TT--EEEEEE---SSS
T ss_pred cCceEEEEecccccccccccc-------ccccceeeeeecccCchH---HHHHHHHhhhhcc--cCcceEEeecCCCCCC
Confidence 35555666664321 11111 156789999999877655 2444443333222 22222244443 223
Q ss_pred hHHHHHHHhcCCC
Q psy12977 206 DVAKWCRRKLKRR 218 (226)
Q Consensus 206 ~~~~~~~~~~~~p 218 (226)
...++..+...+.
T Consensus 142 ~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 142 WFYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHHCTS
T ss_pred ceeeeeehhhcCC
Confidence 4555555555443
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=0.16 Score=42.82 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=28.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
....+++||||+|.+... ....+...++.- ++.+.+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~----a~NaLLK~LEEP-p~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS----AANSLLKFLEEP-SGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH----HHHHHHHHhcCC-CCCceEEEEeC
Confidence 456789999999998765 455566666653 55666666443
No 389
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.34 E-value=0.085 Score=50.06 Aligned_cols=20 Identities=25% Similarity=0.102 Sum_probs=16.6
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
..++++.||+|+|||...-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 35899999999999986543
No 390
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.32 E-value=0.13 Score=43.27 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~ 95 (226)
|+-+.+.+|+|+|||...+..+.+.... +.+++|+.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHHH
Confidence 4567899999999997665555554432 457888876555543
No 391
>PHA00350 putative assembly protein
Probab=95.32 E-value=0.29 Score=42.32 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred EEEECCCCchHhHHHHH-HHHHHhcC
Q psy12977 52 IFACAPTGSGKTAAFLI-PIIHSLRG 76 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~-~~~~~~~~ 76 (226)
.++.|.+|||||...+- -++..++.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 47899999999987664 35555543
No 392
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.32 E-value=0.21 Score=47.54 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.5
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.+.++.||+|+|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 579999999999998653
No 393
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.18 Score=42.30 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+++||||+|.|... ....+.++++.- + ++.+++.|..
T Consensus 122 ~~~~kVvII~~ae~m~~~----aaNaLLK~LEEP-p-~~~fILi~~~ 162 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA----AANALLKTLEEP-G-NGTLILIAPS 162 (314)
T ss_pred cCCceEEEEEchhhcCHH----HHHHHHHHHhCC-C-CCeEEEEECC
Confidence 357889999999998765 556666677664 3 5556665543
No 394
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.29 E-value=0.38 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++.+++.||+|+|||...
T Consensus 210 ~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCceEEEECCCCCChHHHH
Confidence 34578999999999999753
No 395
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.19 E-value=0.048 Score=53.96 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEE
Q psy12977 36 FEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115 (226)
Q Consensus 36 ~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 115 (226)
+|+-|..+.. ..+++++|.|..|||||....--++..+... ..-.++++++-|+.-+..+.+.+.+.....-..
T Consensus 2 ~t~~Q~~ai~-~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY-TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 4666655554 4678999999999999998766666666433 222479999999999998888777664321110
Q ss_pred ecchhhhhhhCCCcCCCCCEEEECchHHHHhHhc-CCCCCCCCCccEEEEccccc
Q psy12977 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQM-DPPALNLANVEWLIVDESDK 169 (226)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~-~~~~~~~~~~~~lViDE~h~ 169 (226)
.. ......+.+..-...-|+|-..+...+-+ ....+++ +-.+=|.||...
T Consensus 76 ~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 76 EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 00 00111111122234568888887654433 2122221 123456887774
No 396
>PRK09354 recA recombinase A; Provisional
Probab=95.18 E-value=0.16 Score=43.05 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~ 95 (226)
|+-+.+.+|+|+|||...+..+.+.... +.+++|+-.-.++-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchHH
Confidence 4567899999999998766555555432 557888876665554
No 397
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.45 Score=42.43 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.0
Q ss_pred eEEEECCCCchHhHHHHHH
Q psy12977 51 QIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~ 69 (226)
-.++.||+|+|||....+-
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3578999999999765543
No 398
>CHL00176 ftsH cell division protein; Validated
Probab=95.14 E-value=0.51 Score=43.48 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
+.+++.||+|+|||...-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 399
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.2 Score=42.42 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=28.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
....+.+|||++|.|... ....+.++++. |++++-+++.|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~----AaNaLLKtLEE-Pp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA----AANALLKTLEE-PPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHH----HHHHHHHHhcC-CCCCeEEEEEEC
Confidence 457889999999999876 55566666665 455556666554
No 400
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.10 E-value=0.14 Score=43.21 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998654
No 401
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.09 E-value=0.16 Score=45.24 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+.+++.||+|+|||...
T Consensus 258 ~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CCceEEEECCCCCcHHHHH
Confidence 3477999999999999754
No 402
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=95.09 E-value=0.061 Score=46.82 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=47.9
Q ss_pred hHhcCCCCCCCCCccE-EEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 146 LLQMDPPALNLANVEW-LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 146 ~~~~~~~~~~~~~~~~-lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
++...++.=++++-++ +.+||||.+++.....+.+.+.++.+.+.++.+-++++|.++.
T Consensus 242 Lfe~LPEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~ 301 (502)
T PF05872_consen 242 LFEQLPEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPT 301 (502)
T ss_pred HHHhCccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCC
Confidence 3345566666777776 5599999999887778999999999999889999999998843
No 403
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.06 E-value=0.031 Score=47.18 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
..+++++++|+||||||.. +-.++..+.. ..+++.+-.+.|+.
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip~----~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIPA----IERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCCC----CCeEEEecCCCccc
Confidence 4578999999999999974 4556666542 34677765665553
No 404
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.29 Score=41.51 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+++|||++|.|... ....+.++++. |++++-+++.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~----AaNaLLKtLEE-Pp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA----AANALLKTLEE-PPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHH----HHHHHHHHhcC-CCcCcEEEEEECC
Confidence 456789999999999776 55556666665 3455555555433
No 405
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.96 E-value=0.62 Score=36.71 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=37.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee---CchhHHHHHHHhcCCCeE
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT---HTEDVAKWCRRKLKRRVQ 220 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT---~~~~~~~~~~~~~~~p~~ 220 (226)
..+-+.+|+|-...+.-.+......+....++.+ ...-+++++|+. +++++.-.++....-.+.
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l-~d~gKvIilTvhp~~l~e~~~~rirs~~d~~l~ 187 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKL-SDLGKVIILTVHPSALDEDVLTRIRSACDVYLR 187 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHH-HhCCCEEEEEeChhhcCHHHHHHHHHhhheeEE
Confidence 5677899999999776553111222222333334 346688888887 456665555554433333
No 406
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.93 E-value=0.14 Score=40.75 Aligned_cols=44 Identities=20% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEccc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPT 90 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt 90 (226)
..|.-+.+.||+|+|||...+..+....... ...+.+++++..-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 3567789999999999976554444433211 1113478887643
No 407
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.93 E-value=0.92 Score=36.27 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=31.0
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhc--------CCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLR--------GPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~--------~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
-.++.||+|+|||...+--++.... .....+.+++|+.- .+=..++.+.+..+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQH 66 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHhh
Confidence 3579999999999865544443321 11223457788762 22223444455555443
No 408
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.35 Score=40.63 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+++||||+|.|... ....+.++++.= ++++.+++.|..
T Consensus 111 ~g~~kV~iI~~ae~m~~~----AaNaLLKtLEEP-p~~~~fiL~~~~ 152 (319)
T PRK08769 111 YGIAQVVIVDPADAINRA----ACNALLKTLEEP-SPGRYLWLISAQ 152 (319)
T ss_pred cCCcEEEEeccHhhhCHH----HHHHHHHHhhCC-CCCCeEEEEECC
Confidence 346789999999999765 555666677663 556667766543
No 409
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.093 Score=39.39 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHH
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYA 187 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~ 187 (226)
..-|++|+||.--|--. .+.|...+..++.
T Consensus 99 ~~aDvIIIDEIGpMElk-s~~f~~~ve~vl~ 128 (179)
T COG1618 99 EEADVIIIDEIGPMELK-SKKFREAVEEVLK 128 (179)
T ss_pred hcCCEEEEecccchhhc-cHHHHHHHHHHhc
Confidence 34689999999866321 1268888888874
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.83 E-value=0.44 Score=37.24 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=32.9
Q ss_pred CchHHHHhHhcCCCCCCCCCccEEEEccccccc-cc-CccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 139 TPNKLVYLLQMDPPALNLANVEWLIVDESDKLF-EA-GVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 139 Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~-~~-~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
+...+.+.+...... -++|+||+|.+. .. ....+...+..+...........++++++-
T Consensus 105 ~l~~~~~~l~~~~~~------~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK------VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC------EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc------EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 445555555542121 599999999998 21 123567777777777434444444456664
No 411
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.026 Score=47.36 Aligned_cols=61 Identities=23% Similarity=0.117 Sum_probs=39.2
Q ss_pred ccccCCCCccccc-ccCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 31 SIFKHFEPHFTIT-YLSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 31 ~~~~~~~~~Q~~~-~~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
-.|+.+++-|... +.+..+ .|++++|.||||||.. +..+...+. ...|+|.+-.|-||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~----~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID----SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC----CcccEEEEeehhhhccC
Confidence 3566777766333 444444 5999999999999974 233333333 23388998888777544
No 412
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.79 E-value=0.09 Score=48.50 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=39.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
++.++.|.||||||+.... ++... +..++|++|++.+|.|.++.++.+.+.
T Consensus 30 ~~~~l~Gvtgs~kt~~~a~-~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 30 KHQTLLGVTGSGKTFTMAN-VIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CcEEEECCCCcHHHHHHHH-HHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 3567999999999986543 33322 235899999999999999999999753
No 413
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.76 E-value=0.077 Score=48.04 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=65.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH-HHHHHHhhcCCCeEEEEec---chhhhhhh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY-NETVRLSEGLGLRAHVIGK---IQQAAEKF 125 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 125 (226)
+.+.+..++-+|||...+..+...+...+ .-++++.||.+.+.+.. +.+..+.+....--..+.. ........
T Consensus 34 ~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P---~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~ 110 (557)
T PF05876_consen 34 REVVVMKSAQVGKTELLLNWIGYSIDQDP---GPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTIL 110 (557)
T ss_pred cEEEEEEcchhhHhHHHHhhceEEEEeCC---CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchh
Confidence 57899999999999966555545554332 25899999999999976 4566665543321111111 11111111
Q ss_pred CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 126 GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 126 ~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
..... +..+.++..+. +..+.-..++++++||+|...+
T Consensus 111 ~k~f~-gg~l~~~ga~S--------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 111 YKRFP-GGFLYLVGANS--------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred heecC-CCEEEEEeCCC--------CcccccCCcCEEEEechhhccc
Confidence 11122 34455544332 1344455788999999998854
No 414
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.23 Score=40.81 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=26.1
Q ss_pred chHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 140 PNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 140 p~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
|+-+..++.. +..=|.+.+||.|++... ..+.+.-.++.+
T Consensus 91 ~gDlaaiLt~------Le~~DVLFIDEIHrl~~~----vEE~LYpaMEDf 130 (332)
T COG2255 91 PGDLAAILTN------LEEGDVLFIDEIHRLSPA----VEEVLYPAMEDF 130 (332)
T ss_pred hhhHHHHHhc------CCcCCeEEEehhhhcChh----HHHHhhhhhhhe
Confidence 4555555554 666789999999998654 444555555544
No 415
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.74 E-value=0.051 Score=45.67 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
...++++++.|+||||||. ++-.++..+.. .....+++++-.+.|+
T Consensus 145 v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~-~~~~~rivtIEd~~El 190 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTT-LVNAIINEMVI-QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHcCCeEEEECCCCCCHHH-HHHHHHHhhhh-cCCCceEEEEcCCCcc
Confidence 3467899999999999995 44555554321 1123477887777766
No 416
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.49 Score=36.65 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=61.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
++=.++.+|=.||||...+-.+.. ....+.++++..|...---+ ...+....|.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~----~~~~g~~v~vfkp~iD~R~~------------~~~V~Sr~G~---------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARR----YKEAGMKVLVFKPAIDTRYG------------VGKVSSRIGL---------- 57 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHH----HHHcCCeEEEEecccccccc------------cceeeeccCC----------
Confidence 344678999999999864443333 23346688888876432110 1111111111
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+..-++|-.+..+...+...+. ...++++.||||+-+.+. ....+.++...+
T Consensus 58 --~~~A~~i~~~~~i~~~i~~~~~---~~~~~~v~IDEaQF~~~~----~v~~l~~lad~l 109 (201)
T COG1435 58 --SSEAVVIPSDTDIFDEIAALHE---KPPVDCVLIDEAQFFDEE----LVYVLNELADRL 109 (201)
T ss_pred --cccceecCChHHHHHHHHhccc---CCCcCEEEEehhHhCCHH----HHHHHHHHHhhc
Confidence 1223666677777777765322 223899999999965443 666666666543
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.73 E-value=0.024 Score=44.95 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.8
Q ss_pred EEEECCCCchHhHHH
Q psy12977 52 IFACAPTGSGKTAAF 66 (226)
Q Consensus 52 ~li~apTGsGKT~~~ 66 (226)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999854
No 418
>PHA00012 I assembly protein
Probab=94.64 E-value=0.28 Score=41.15 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCCCccEEEEcccccccccCc--cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC
Q psy12977 155 NLANVEWLIVDESDKLFEAGV--RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216 (226)
Q Consensus 155 ~~~~~~~lViDE~h~l~~~~~--~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~ 216 (226)
+...-.++|+||||..+.... ......+...+......+.=++++|..+ ..+...+++.+.
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~ll~ 140 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREALA 140 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHhhh
Confidence 345667999999999876421 0122334444444434566677766553 466666655443
No 419
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.63 E-value=0.18 Score=44.06 Aligned_cols=39 Identities=21% Similarity=0.051 Sum_probs=25.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC 88 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~ 88 (226)
..|.-+++.|+||+|||...+--+.+.... .+..+++++
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~---~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALR---EGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 345668899999999998655444444322 133566665
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.61 E-value=0.042 Score=44.83 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
.+.++++.|+||||||... ..++..+... ..+++.+-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 4789999999999999854 5566666532 3477777766655
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.60 E-value=2.2 Score=35.88 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhc----C-CCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC----S-GPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~----~-~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
.+.+++++|=+-++.... .....+..+.+.. + .+..-++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~--~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKT--NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCH--HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 467899999887664321 3555666655432 1 1333467778886554433444443
No 422
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.24 Score=44.21 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=31.3
Q ss_pred CccEEEEcccccccccCccch----HHHHHHHHHhcC--CCCceEEEEeee-CchhHHHHHHH
Q psy12977 158 NVEWLIVDESDKLFEAGVRGF----RDQLAVIYAACS--GPNLKRGMFSAT-HTEDVAKWCRR 213 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~----~~~i~~i~~~~~--~~~~q~v~~SAT-~~~~~~~~~~~ 213 (226)
.-..+.+||+|.+......+. ...+..++..+. .....++++.|| .|..+...+.+
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR 397 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLR 397 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcc
Confidence 446899999998876532111 244445544441 334456666777 44444544444
No 423
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.56 E-value=0.52 Score=42.10 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=15.0
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 424
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.017 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=17.7
Q ss_pred CCCCeEEEECCCCchHhHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~ 67 (226)
++..|+++.+|||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 456789999999999998654
No 425
>PRK05748 replicative DNA helicase; Provisional
Probab=94.56 E-value=0.18 Score=44.40 Aligned_cols=50 Identities=18% Similarity=-0.006 Sum_probs=29.0
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
.|.-+++.|+||+|||...+--+.+.... .+..++++ ....-..|+...+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~---~g~~v~~f-SlEms~~~l~~R~ 251 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK---TDKNVAIF-SLEMGAESLVMRM 251 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh---CCCeEEEE-eCCCCHHHHHHHH
Confidence 34568899999999998655444443322 13345555 3334444554444
No 426
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.65 Score=39.18 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
....+.+|+|++|.+... ....+.+.++.. +..+.+++.|
T Consensus 111 ~~~~kV~iiEp~~~Ld~~----a~naLLk~LEep-~~~~~~Ilvt 150 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ----AANSLLKVLEEP-PPQVVFLLVS 150 (325)
T ss_pred cCCceEEEEechhhCCHH----HHHHHHHHHHhC-cCCCEEEEEe
Confidence 356789999999988655 666666777776 3445555543
No 427
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.51 E-value=0.12 Score=46.73 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+.+-+.+++||+-.-+|. .....+.+.+...
T Consensus 485 l~~~~illLDEpts~LD~---~~~~~i~~~L~~~ 515 (571)
T TIGR02203 485 LKDAPILILDEATSALDN---ESERLVQAALERL 515 (571)
T ss_pred hcCCCEEEEeCccccCCH---HHHHHHHHHHHHH
Confidence 556689999999988887 5777777766666
No 428
>PRK06904 replicative DNA helicase; Validated
Probab=94.47 E-value=0.19 Score=44.58 Aligned_cols=147 Identities=15% Similarity=0.002 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec---chhhhhh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK---IQQAAEK 124 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 124 (226)
.|.=+++.|.||.|||...+-.+.+.... .+..+++++ ...=.+|+...+-........... ..+ ......+
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v~~~~i-~~g~~l~~~e~~~ 294 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFS-LEMPAEQIMMRMLASLSRVDQTKI-RTGQNLDQQDWAK 294 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHh-ccCCCCCHHHHHH
Confidence 34557899999999998554333333322 133455553 333444554443333221111100 011 0000000
Q ss_pred ---hCCCcCCCCCEEEE-----CchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc-cchHHHHHHHHHhc----CC
Q psy12977 125 ---FGPRSAQKFDVLIT-----TPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV-RGFRDQLAVIYAAC----SG 191 (226)
Q Consensus 125 ---~~~~~~~~~~IiV~-----Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~-~~~~~~i~~i~~~~----~~ 191 (226)
....+...+++.|- |+..+....++... ....++++|||-.+.+...+. .+....+..+.+.+ ..
T Consensus 295 ~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~--~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 372 (472)
T PRK06904 295 ISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR--ENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE 372 (472)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH--hCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 00111223445552 44555443332101 112578999999997753321 12222333333322 12
Q ss_pred CCceEEEEee
Q psy12977 192 PNLKRGMFSA 201 (226)
Q Consensus 192 ~~~q~v~~SA 201 (226)
.++.++++|.
T Consensus 373 l~ipVi~lsQ 382 (472)
T PRK06904 373 LKVPVVALSQ 382 (472)
T ss_pred hCCeEEEEEe
Confidence 4788888863
No 429
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.45 E-value=0.038 Score=47.60 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=39.9
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEe
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIG 116 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 116 (226)
++++.||||+|||.++++|-+... +..+|++=|--++........+.. |.++..++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 478999999999999888855432 236888889989988776655443 44444443
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.41 E-value=0.21 Score=46.62 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+--++|+|+.|.+.+. .....+.++++.. +++...++.|=+-|+
T Consensus 127 ~~~pl~LVlDDyHli~~~---~l~~~l~fLl~~~-P~~l~lvv~SR~rP~ 172 (894)
T COG2909 127 YEGPLYLVLDDYHLISDP---ALHEALRFLLKHA-PENLTLVVTSRSRPQ 172 (894)
T ss_pred hcCceEEEeccccccCcc---cHHHHHHHHHHhC-CCCeEEEEEeccCCC
Confidence 334469999999999888 6888999999888 678888888877553
No 431
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.38 E-value=0.055 Score=46.18 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+-+++.+|+|+|||+..
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 45789999999999864
No 432
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.33 E-value=0.38 Score=36.64 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=66.3
Q ss_pred EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH-HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcC
Q psy12977 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE-LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSA 130 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (226)
+.+-...|-|||.+++--++..+-. +.+++++-=.+. ...--...++.+. +........+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~----G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~------------ 66 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH----GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKG------------ 66 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT----T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT------------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC----CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCc------------
Confidence 5567778999999887777776643 668888876665 2121122222221 2222221110
Q ss_pred CCCCEEEEC------chHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 131 QKFDVLITT------PNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 131 ~~~~IiV~T------p~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.+... .....+.+......+.-...++||+||+-..++.+. -..+.+..+++.- ++..-+|+..-..|
T Consensus 67 ----f~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gl-l~~~~v~~~l~~r-p~~~evVlTGR~~~ 140 (172)
T PF02572_consen 67 ----FVWRMNEEEEDRAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGL-LSEEEVLDLLENR-PESLEVVLTGRNAP 140 (172)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTS-S-HHHHHHHHHTS--TT-EEEEE-SS--
T ss_pred ----ccccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCC-ccHHHHHHHHHcC-CCCeEEEEECCCCC
Confidence 11111 112222222222344456899999999988777643 2445666666654 56778888777788
Q ss_pred hhHHHHHH
Q psy12977 205 EDVAKWCR 212 (226)
Q Consensus 205 ~~~~~~~~ 212 (226)
+++.+.+.
T Consensus 141 ~~l~e~AD 148 (172)
T PF02572_consen 141 EELIEAAD 148 (172)
T ss_dssp HHHHHH-S
T ss_pred HHHHHhCC
Confidence 88877663
No 433
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.32 E-value=0.068 Score=47.25 Aligned_cols=57 Identities=30% Similarity=0.531 Sum_probs=40.8
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEe
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIG 116 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 116 (226)
.++++.||||||||.++++|.+-... + -+|+.=|-.++........++. +.++..+.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~-----~-s~iV~D~KgEl~~~t~~~r~~~----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP-----G-SMIVTDPKGELYEKTAGYRKKR----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc-----C-CEEEEECCCcHHHHHHHHHHHC----CCEEEEee
Confidence 47999999999999999988664321 1 5788888888887776655554 44554444
No 434
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.29 E-value=0.16 Score=44.51 Aligned_cols=51 Identities=20% Similarity=0.031 Sum_probs=29.5
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
.|.-+++.|+||+|||...+-.+.+..... +..+++++ ...=..|+.+.+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~---g~~vl~~S-lEm~~~~i~~R~~ 244 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE---GKPVAFFS-LEMSAEQLAMRML 244 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC---CCeEEEEe-CcCCHHHHHHHHH
Confidence 345678999999999986554444444321 33455554 3334444444443
No 435
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.28 E-value=0.023 Score=43.22 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=29.1
Q ss_pred cCCCCCEEEECchHHHHhHhcCCC-CCCCCCccEEEEccccccccc
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPP-ALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~-~~~~~~~~~lViDE~h~l~~~ 173 (226)
....+||+|++...+++....... .+. .+-.+||+||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHHH
Confidence 456789999999988865432111 122 34469999999999765
No 436
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.25 E-value=0.096 Score=47.73 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+++|+||+-.-+|. .....+.+.+...
T Consensus 487 l~~~~iliLDEpts~LD~---~t~~~i~~~l~~~ 517 (588)
T PRK13657 487 LKDPPILILDEATSALDV---ETEAKVKAALDEL 517 (588)
T ss_pred hcCCCEEEEeCCccCCCH---HHHHHHHHHHHHH
Confidence 667789999999988887 5777777666665
No 437
>KOG0733|consensus
Probab=94.25 E-value=0.34 Score=43.87 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=31.3
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhc-------CCC---CceEEEEeeeC-chhHHHHHHHh
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAAC-------SGP---NLKRGMFSATH-TEDVAKWCRRK 214 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~-------~~~---~~q~v~~SAT~-~~~~~~~~~~~ 214 (226)
-.+++|||.|.+.........+.-++|..++ ..+ +..++...||- |+.+..-+++-
T Consensus 283 PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRa 349 (802)
T KOG0733|consen 283 PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRA 349 (802)
T ss_pred CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhcc
Confidence 3589999999886542112222333333332 122 35688888994 44555555553
No 438
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.25 E-value=0.99 Score=34.79 Aligned_cols=145 Identities=16% Similarity=0.105 Sum_probs=75.1
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH-HHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY-NETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
=+++...+|-|||.+.+-.++..+-. |.++.|+.=.+-=-..=. ..+..+ +..+....-+..-.....
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh----G~rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw~~~--- 98 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH----GLRVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTWETQ--- 98 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC----CCEEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeCCCc---
Confidence 37788999999999887777776643 557777754332211111 122222 222222211100000000
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
....|+ ......+.... ..+.-.+++++|+||.--.+..+.- -.+.+..+++.- ++..-+|+..-..|+++.+
T Consensus 99 ~~~~d~--~aa~~~w~~a~---~~l~~~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~k-P~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 99 DREADI--AAAKAGWEHAK---EALADGKYDLVILDELNYALRYGLL-PLEEVVALLKAR-PEHTHVIITGRGAPPELIE 171 (198)
T ss_pred CcHHHH--HHHHHHHHHHH---HHHhCCCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcC-CCCcEEEEECCCCCHHHHH
Confidence 000122 22222232222 2333447999999999977776432 345666666554 4556666655557777777
Q ss_pred HHHH
Q psy12977 210 WCRR 213 (226)
Q Consensus 210 ~~~~ 213 (226)
.+..
T Consensus 172 ~ADl 175 (198)
T COG2109 172 LADL 175 (198)
T ss_pred HHHH
Confidence 6654
No 439
>KOG0652|consensus
Probab=94.23 E-value=0.25 Score=40.19 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=28.2
Q ss_pred CccEEEEccccccccc-------CccchHHHHHHHHHhc--CCCCceEEEEeeeC
Q psy12977 158 NVEWLIVDESDKLFEA-------GVRGFRDQLAVIYAAC--SGPNLKRGMFSATH 203 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~-------~~~~~~~~i~~i~~~~--~~~~~q~v~~SAT~ 203 (226)
.-..+.+||.|.+... +.+.....+..++.++ .++..++-...||.
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 4458899999987532 2445566666666665 23445555556773
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.21 E-value=0.57 Score=37.30 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=39.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRR 213 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~ 213 (226)
..+-++++-||.=.-+|. .....+..+++.+....-+.+++ +|..+++...+.+
T Consensus 158 ~~~P~iilADEPTgnLD~---~t~~~V~~ll~~~~~~~g~tii~-VTHd~~lA~~~dr 211 (226)
T COG1136 158 INNPKIILADEPTGNLDS---KTAKEVLELLRELNKERGKTIIM-VTHDPELAKYADR 211 (226)
T ss_pred hcCCCeEEeeCccccCCh---HHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHhCCE
Confidence 445679999999988887 57888888888874444456655 8888888776655
No 441
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.20 E-value=0.71 Score=38.58 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=26.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
...-+++||||+|.+... ....+...++.- ++.+.+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~----a~naLLK~LEep-p~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ----AQNAFLKTIEEP-PKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHH----HHHHHHHHhcCC-CCCeEEEEEe
Confidence 357789999999988665 455666666553 4555566544
No 442
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.17 E-value=0.49 Score=43.50 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
++-+++.||+|+|||..+-+
T Consensus 110 ~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34489999999999986433
No 443
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.93 Score=37.54 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=31.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
-...+++|||++|.|... ....+.++++. |++++-+++.|..
T Consensus 93 e~~~kv~ii~~ad~mt~~----AaNaLLK~LEE-Pp~~~~fiL~~~~ 134 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD----AISAFLKVLED-PPQHGVIILTSAK 134 (290)
T ss_pred CCCceEEEEechhhcCHH----HHHHHHHHhhc-CCCCeEEEEEeCC
Confidence 456889999999999776 56667777766 4566777776555
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.11 E-value=0.13 Score=41.73 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
..|+.+++.|++|+|||....-.+...+.. +.+++++ .+.+-..++.+.+.++..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyv-s~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYV-STEESPEELLENARSFGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEE-EecCCHHHHHHHHHHcCCC
Confidence 567889999999999998655555555543 4456665 5556777777777666433
No 445
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.11 E-value=0.082 Score=48.15 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+.+++||+-.-+|. .....+...+..+
T Consensus 501 l~~~~IliLDE~TSaLD~---~te~~i~~~l~~~ 531 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDA---HSEQLVMQALNAA 531 (588)
T ss_pred hcCCCEEEEeCCccCCCH---HHHHHHHHHHHHH
Confidence 556789999999998888 5777777777666
No 446
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.09 E-value=0.053 Score=43.99 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc---cHHHHHHHHHHHHHHhhcCCCeEEEEecc--hhhh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP---TRELAKQTYNETVRLSEGLGLRAHVIGKI--QQAA 122 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P---t~~L~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~ 122 (226)
.|.=+++.|+||.|||...+-.+.+..... +..++|++. ..+++..+....... ...-. ..+. ..+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlEm~~~~l~~R~la~~s~v----~~~~i-~~g~l~~~e~ 89 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLEMSEEELAARLLARLSGV----PYNKI-RSGDLSDEEF 89 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESSS-HHHHHHHHHHHHHTS----THHHH-HCCGCHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhhcc----hhhhh-hccccCHHHH
Confidence 345678999999999987766666666532 346777764 234444333322111 10000 0000 0000
Q ss_pred hhh---CCCcCCCCCEEEE----CchHHHHhHhcCCCCCCCCCccEEEEccccccccc-CccchHHHHHHHHHhc----C
Q psy12977 123 EKF---GPRSAQKFDVLIT----TPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA-GVRGFRDQLAVIYAAC----S 190 (226)
Q Consensus 123 ~~~---~~~~~~~~~IiV~----Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~-~~~~~~~~i~~i~~~~----~ 190 (226)
... ...+....-.+.. |++.+.+.+... ......++++|||-.|.+... ...+....+..+.+.+ .
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~--~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRL--KREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHH--HHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHH--HhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000 0001111112223 344555544431 111267899999999988653 2222333333332222 1
Q ss_pred CCCceEEEEeee
Q psy12977 191 GPNLKRGMFSAT 202 (226)
Q Consensus 191 ~~~~q~v~~SAT 202 (226)
..++.++++|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 236778877665
No 447
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.05 E-value=0.14 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=16.3
Q ss_pred CCCCCCccEEEEccccccccc
Q psy12977 153 ALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 153 ~~~~~~~~~lViDE~h~l~~~ 173 (226)
.-...+.+..||||+|.+.-.
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~~ 134 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSKQ 134 (515)
T ss_pred CCccccceEEEEecHHhhhHH
Confidence 334678899999999977655
No 448
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.04 E-value=0.43 Score=40.01 Aligned_cols=54 Identities=6% Similarity=-0.163 Sum_probs=30.3
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcC--CCCCCceEEEEcccHHH-HHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG--PKNLGFRAVIVCPTREL-AKQTYNETV 102 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~--~~~~~~~~iil~Pt~~L-~~q~~~~~~ 102 (226)
|.-+.+.||+|+|||...+..++..... ....+.+++|+.--... .+++.+..+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999996544333332211 11234588888754322 344444333
No 449
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.00 E-value=0.47 Score=41.91 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.|.-+++.|++|+|||...+..+...... +.+++|+.. .+-..|+.....++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~----g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN----QMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEEC-cCCHHHHHHHHHHc
Confidence 35678999999999998655444443321 346888764 34456665544443
No 450
>PF12846 AAA_10: AAA-like domain
Probab=93.97 E-value=0.11 Score=42.56 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=31.3
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
..-.++++||+|.+.... .....+..+.+...+.+.-+++.|.++
T Consensus 219 ~~~~~i~iDEa~~~~~~~--~~~~~~~~~~~~~Rk~g~~~~l~tQ~~ 263 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNP--SGAEFLDELLREGRKYGVGLILATQSP 263 (304)
T ss_pred CceEEEEeCCcccccccc--chhhhhhHHHHHHHhcCCEEEEeeCCH
Confidence 445688999999998764 455566666666655567777766664
No 451
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.96 E-value=0.64 Score=40.24 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=27.0
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
...++.++++.|+||+||++.+.. ++........+|.+-+-|-
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A~~--iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFARL--IHALSARRAEAPFIAFNCA 139 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHHHH--HHHhhhcccCCCEEEEEHH
Confidence 335689999999999999986433 2233222134556655543
No 452
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.96 E-value=0.15 Score=46.32 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
+.+-+++++||+-.-+|. .....+.+.+..+ ..++-+++.|
T Consensus 496 l~~~~ililDEptsaLD~---~t~~~i~~~l~~~-~~~~tvI~Vt 536 (582)
T PRK11176 496 LRDSPILILDEATSALDT---ESERAIQAALDEL-QKNRTSLVIA 536 (582)
T ss_pred HhCCCEEEEECccccCCH---HHHHHHHHHHHHH-hCCCEEEEEe
Confidence 556689999999998887 5666676666665 2344444443
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.87 E-value=0.14 Score=43.51 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.8
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
.+..++++||||||||... ..++..+... .+.+++.+-...|.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhh
Confidence 4578999999999999854 4455555422 23356666555444
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.86 E-value=0.064 Score=47.22 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=20.3
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcC
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRG 76 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~ 76 (226)
.=+++.||||||||.. ++.++..+..
T Consensus 259 GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 259 GLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred eEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4578999999999985 4677777654
No 455
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.85 E-value=0.12 Score=48.04 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+.+-+++++||+=.-+|. .....+.+.+..+
T Consensus 617 l~~p~iliLDE~Ts~LD~---~te~~i~~~l~~~ 647 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDN---RSEERFKDRLKRW 647 (694)
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHHHHHH
Confidence 567789999999988887 5777777777666
No 456
>KOG2170|consensus
Probab=93.79 E-value=0.17 Score=41.78 Aligned_cols=53 Identities=21% Similarity=0.148 Sum_probs=39.1
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcC------CCCceEEEEeeeCchhHHHHHHHhc
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACS------GPNLKRGMFSATHTEDVAKWCRRKL 215 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~------~~~~q~v~~SAT~~~~~~~~~~~~~ 215 (226)
=.++|+||+|.|.. +..+.++-.+.+.+ ..+.-++++|.+-.+++.+.+....
T Consensus 179 rslFIFDE~DKmp~----gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPP----GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred CceEEechhhhcCH----hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 35999999998865 48888888887642 2456789999887777766655544
No 457
>PRK08506 replicative DNA helicase; Provisional
Probab=93.76 E-value=0.38 Score=42.70 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=29.6
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
.|.-+++.|+||.|||...+-.+.+.... +..+++++ ...=..|+...+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~----g~~V~~fS-lEMs~~ql~~Rl 239 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ----DKGVAFFS-LEMPAEQLMLRM 239 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc----CCcEEEEe-CcCCHHHHHHHH
Confidence 34567899999999998665555554432 33566654 333444444443
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.75 E-value=0.19 Score=40.65 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhc
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLR 75 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~ 75 (226)
+-.|..+++.||.|+|||.. +-.+++.+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~ 41 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAIT 41 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 46789999999999999963 233444443
No 459
>KOG2228|consensus
Probab=93.74 E-value=0.89 Score=38.37 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.||-|+|||.-.
T Consensus 48 EsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred CCCceEEEccCCCCceEee
Confidence 3577999999999999653
No 460
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.72 E-value=0.064 Score=44.93 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=38.5
Q ss_pred ccCCCCcc-cccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 33 FKHFEPHF-TITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 33 ~~~~~~~Q-~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
++.+++.| .+.+ .+..+++++++++||||||. ++.+++..+.. ..|.+.+-.+.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~----~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP----EERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc----hhcEEEEeccccc
Confidence 45556665 3334 66778999999999999997 45666666642 3367777666655
No 461
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.66 E-value=0.25 Score=41.96 Aligned_cols=42 Identities=14% Similarity=-0.078 Sum_probs=25.4
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHH-hcC-CCCCCceEEEEccc
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHS-LRG-PKNLGFRAVIVCPT 90 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~-~~~-~~~~~~~~iil~Pt 90 (226)
|.-+.+.|++|+|||...+-.++.. +.. ....+.+++|+..-
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 4557799999999996443333322 211 12223588888763
No 462
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.65 E-value=0.17 Score=45.55 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+.+-+.+++||+-.-+|. .....+.+.+..+
T Consensus 474 ~~~~~ililDE~ts~lD~---~~~~~i~~~l~~~ 504 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDA---ETEALVTEALRAL 504 (529)
T ss_pred hcCCCEEEEeCcccccCH---HHHHHHHHHHHHh
Confidence 556789999999988887 5666776666666
No 463
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.60 E-value=0.48 Score=34.81 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
..+-+++++||.-.-+|. .....+...++.+ +. .++++..-++.+..+
T Consensus 86 ~~~p~illlDEP~~~LD~---~~~~~l~~~l~~~---~~-til~~th~~~~~~~~ 133 (144)
T cd03221 86 LENPNLLLLDEPTNHLDL---ESIEALEEALKEY---PG-TVILVSHDRYFLDQV 133 (144)
T ss_pred hcCCCEEEEeCCccCCCH---HHHHHHHHHHHHc---CC-EEEEEECCHHHHHHh
Confidence 345679999999988877 4667777777666 22 455544444444443
No 464
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.56 E-value=0.15 Score=43.63 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=20.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLR 75 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~ 75 (226)
.+..++++||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4678999999999999754 45555553
No 465
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.55 E-value=0.12 Score=47.05 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+.+-+++++||+-.-+|. .....+.+.++.+
T Consensus 492 l~~~~illlDEpts~LD~---~t~~~i~~~l~~~ 522 (592)
T PRK10790 492 VQTPQILILDEATANIDS---GTEQAIQQALAAV 522 (592)
T ss_pred HhCCCEEEEeCCcccCCH---HHHHHHHHHHHHH
Confidence 456689999999988887 5677777777666
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.50 E-value=0.28 Score=44.00 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
..|..+++.+++|+|||......+.+.+.. +.+++|++- .+-..++.+.+..+
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~~~~----g~~~~yis~-e~~~~~i~~~~~~~ 323 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAACRR----GERCLLFAF-EESRAQLIRNARSW 323 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 345778899999999998655545555442 446777754 34466666666555
No 467
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.43 E-value=1.4 Score=33.45 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=61.8
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
..+++.|++|||||.....- .... +...+++......-.++.+.+......-+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l-~~~~------~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~------------------ 56 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERL-AAQS------GLQVLYIATAQPFDDEMAARIAHHRQRRPAH------------------ 56 (170)
T ss_pred CEEEEECCCCccHHHHHHHH-HHHc------CCCcEeCcCCCCChHHHHHHHHHHHhcCCCC------------------
Confidence 35789999999999754332 2222 1245676665544444444443332111111
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC---c--cchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG---V--RGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~---~--~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
=..+-.|..+...+... .+.-+.+++|-...+.... . ..+...+..+.+.+......+++.|..
T Consensus 57 ----w~t~E~~~~l~~~i~~~-----~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 57 ----WQTVEEPLDLAELLRAD-----AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred ----CeEecccccHHHHHHhh-----cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 12334454455544320 1234478888777664321 0 123345555666664556677887776
No 468
>PRK08760 replicative DNA helicase; Provisional
Probab=93.41 E-value=0.46 Score=42.28 Aligned_cols=52 Identities=15% Similarity=-0.042 Sum_probs=29.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
.|.=+++.|+||.|||...+-.+.+..... +..++|++ ...=..|+...+..
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~---g~~V~~fS-lEMs~~ql~~Rl~a 279 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS---KKGVAVFS-MEMSASQLAMRLIS 279 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc---CCceEEEe-ccCCHHHHHHHHHH
Confidence 345578999999999986655444443221 23455553 22333455444433
No 469
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.40 E-value=0.38 Score=43.77 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
+.+-+++++||+-.-+|. .....+.+.+..+. + .+.+++.+.-++.
T Consensus 491 l~~~~ililDE~ts~lD~---~t~~~i~~~l~~~~-~-~~tviiitHr~~~ 536 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDA---ETERQILELLAEHA-Q-NKTVLMITHRLTG 536 (574)
T ss_pred hcCCCEEEEeCCcccCCH---HHHHHHHHHHHHHc-C-CCEEEEEecChhH
Confidence 566789999999988887 57777777777662 2 3445444554433
No 470
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.40 E-value=0.43 Score=42.14 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=47.6
Q ss_pred CCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 37 EPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 37 ~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
...|+.+ ...-.|+- .+.|-.|||||...+.-+...... ++..+.++.+-|+.|+.++.....+++
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k--nPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK--NPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC--CCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 4445433 34445554 688999999998776665555543 445599999999999999988877776
No 471
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.39 E-value=0.15 Score=46.61 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK 117 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 117 (226)
..++++.||||||||.++++|-+.... .-+||+=|--|+........++. |.++..+.-
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~------~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfdP 216 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWE------DSVVVHDIKLENYELTSGWREKQ----GQKVFVWEP 216 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCC------CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 357899999999999999999766542 24788889999988877666554 555555543
No 472
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.37 E-value=0.26 Score=37.73 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+-+++++||...-+|. .....+...+..+...+.++++.|
T Consensus 115 ~~p~llilDEp~~~LD~---~~~~~i~~~L~~~~~~g~tiIiiS 155 (178)
T cd03239 115 KPSPFYVLDEIDAALDP---TNRRRVSDMIKEMAKHTSQFIVIT 155 (178)
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56689999999988887 455666666665533345666643
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.35 E-value=0.15 Score=39.70 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
-+++.||||||||... ..++..+... .+.+++.+....+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCCcc
Confidence 4689999999999864 4445554322 2235555544333
No 474
>PLN03232 ABC transporter C family member; Provisional
Probab=93.31 E-value=0.15 Score=51.47 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+++|+||+-.-+|. .....+.+.++..
T Consensus 1387 Lr~~~ILILDEATSaLD~---~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDV---RTDSLIQRTIREE 1417 (1495)
T ss_pred HhCCCEEEEECCcccCCH---HHHHHHHHHHHHH
Confidence 556689999999988887 5777887777766
No 475
>PRK09165 replicative DNA helicase; Provisional
Probab=93.30 E-value=0.72 Score=41.27 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=18.2
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHS 73 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~ 73 (226)
|.-+++.|+||+|||...+--+.+.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~ 241 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNA 241 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHH
Confidence 4557899999999998655444443
No 476
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.27 E-value=0.36 Score=36.55 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+-+++++||.-.-+|. .....+..+++.+..... .++++..
T Consensus 112 ~~~p~~lllDEPt~~LD~---~~~~~l~~~l~~~~~~~~-tii~~sh 154 (173)
T cd03246 112 YGNPRILVLDEPNSHLDV---EGERALNQAIAALKAAGA-TRIVIAH 154 (173)
T ss_pred hcCCCEEEEECCccccCH---HHHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 456789999999988887 567777777777633333 4444333
No 477
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.24 E-value=1.1 Score=41.61 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=70.3
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhh---hhCCCcCCCCCEEEECchHHHHhHhcCCCCCC
Q psy12977 79 NLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE---KFGPRSAQKFDVLITTPNKLVYLLQMDPPALN 155 (226)
Q Consensus 79 ~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~ 155 (226)
..+.+++|.++|+..++.+.+.+.+. +..+...+++....+ .......+..+|+|||- .+. ..++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~---rGfD 507 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR---EGLD 507 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc---CCee
Confidence 34668999999999999988877765 666666655422211 11122346688999983 222 6888
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
+..++++|+-|++...-.. .....+.++-+...+.....+++--...+.+
T Consensus 508 iP~v~lVvi~DadifG~p~--~~~~~iqriGRagR~~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 508 LPEVSLVAILDADKEGFLR--SERSLIQTIGRAARNVNGKVIMYADKITDSM 557 (655)
T ss_pred eCCCcEEEEeCcccccCCC--CHHHHHHHhcCCCCCCCCEEEEEEcCCCHHH
Confidence 9999999998888653221 2334444444444334455555544444433
No 478
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.24 E-value=0.38 Score=43.66 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+.+++||+-.-+|. ...+.+.+.++.+
T Consensus 492 ~~~~~ililDEpts~lD~---~~~~~i~~~l~~~ 522 (576)
T TIGR02204 492 LKDAPILLLDEATSALDA---ESEQLVQQALETL 522 (576)
T ss_pred HhCCCeEEEeCcccccCH---HHHHHHHHHHHHH
Confidence 556789999999988887 4666676666666
No 479
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.21 E-value=0.55 Score=35.94 Aligned_cols=146 Identities=9% Similarity=0.018 Sum_probs=77.5
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCc
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRS 129 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (226)
.-+.+--..|-|||.+++--++..+- .+.+++++-=.+--..+=...+.+..+ ++.....+.+.. -.... .
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG----~G~rV~iiQFlKg~~~~GE~~~l~~~~--~v~~~~~g~~~~--~~~~~-~ 92 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAG----QGTPVLIVQFLKGGIQQGPDRPIQLGQ--NLDWVRCDLPRC--LDTPH-L 92 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhc----CCCEEEEEEEecCCCcchHHHHHHhCC--CcEEEECCCCCe--eeCCC-c
Confidence 44667888999999988777776654 366888886555431111111111111 233222211100 00000 0
Q ss_pred CCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
.. - ........+..-...+.-..++++|+||+-...+.+.- -.+.+..+++.. ++..-+|+..-..|+++.+
T Consensus 93 ~~---~---~~~~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli-~~eeVl~~L~~r-p~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 93 DE---S---EKKALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLI-PETEVLEFLEKR-PSHVDVILTGPEMPESLLA 164 (178)
T ss_pred CH---H---HHHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCc-cHHHHHHHHHhC-CCCCEEEEECCCCCHHHHH
Confidence 00 0 00111122221112344567899999999888776422 344566666665 5677888877778888877
Q ss_pred HHH
Q psy12977 210 WCR 212 (226)
Q Consensus 210 ~~~ 212 (226)
.+.
T Consensus 165 ~AD 167 (178)
T PRK07414 165 IAD 167 (178)
T ss_pred hCC
Confidence 663
No 480
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=93.20 E-value=0.18 Score=39.27 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=19.2
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLR 75 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~ 75 (226)
....++++.|+||+|||......+...+.
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 34458999999999999876655555554
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.19 E-value=3.1 Score=35.06 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=73.7
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc-cc-HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC-PT-RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
-+++.|..|+|||.+..--+.. +.+ .+.++++.+ .| |+=| .++++.+.+..+..+.....++
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~-l~~---~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~--------- 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKY-LKQ---QGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGA--------- 204 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHH-HHH---CCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCC---------
Confidence 3689999999999875433323 322 244555544 22 2222 3455666666676665432111
Q ss_pred cCCCCCEEEECchHHH-HhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCc-----eEEEEeee
Q psy12977 129 SAQKFDVLITTPNKLV-YLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNL-----KRGMFSAT 202 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~-~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~-----q~v~~SAT 202 (226)
.|..+. +-++. -...+++++++|=|-++-... +.+..+..+.+-..+... -++.+=||
T Consensus 205 ----------DpAaVafDAi~~----Akar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 205 ----------DPAAVAFDAIQA----AKARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred ----------CcHHHHHHHHHH----HHHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 233322 22221 114578899999999886543 688888888776632221 34444788
Q ss_pred CchhHHHHHHH
Q psy12977 203 HTEDVAKWCRR 213 (226)
Q Consensus 203 ~~~~~~~~~~~ 213 (226)
.-.+..+-++.
T Consensus 269 tGqnal~QAk~ 279 (340)
T COG0552 269 TGQNALSQAKI 279 (340)
T ss_pred cChhHHHHHHH
Confidence 77665554533
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.19 E-value=1 Score=34.13 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
..+-+++++||.-.-+|. .....+..+++.+. .. ..++++..-
T Consensus 114 ~~~p~~lllDEP~~~LD~---~~~~~l~~~l~~~~-~~-~tii~~sh~ 156 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDP---ITERQLLSLIFEVL-KD-KTLIWITHH 156 (178)
T ss_pred hcCCCEEEEECCcccCCH---HHHHHHHHHHHHHc-CC-CEEEEEecC
Confidence 456689999999988887 56677777777663 33 344443333
No 483
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.14 E-value=0.18 Score=47.06 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+++++||+-.-+|. .....+...+..+
T Consensus 627 l~~p~iliLDE~Ts~LD~---~te~~i~~~L~~~ 657 (708)
T TIGR01193 627 LTDSKVLILDESTSNLDT---ITEKKIVNNLLNL 657 (708)
T ss_pred hhCCCEEEEeCccccCCH---HHHHHHHHHHHHh
Confidence 567789999999988887 5666666666654
No 484
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.22 Score=37.87 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
..+-+++++||.-.-+|. .....+..+++.+.......++++..-++.+.+++
T Consensus 116 ~~~p~llilDEP~~~LD~---~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 116 AMDPDVLLLDEPTSALDP---ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA 168 (178)
T ss_pred HCCCCEEEEeCCcccCCH---HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 456689999999988887 57777777777763321345666666555554444
No 485
>KOG0055|consensus
Probab=92.93 E-value=0.32 Score=47.46 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
+++-+.|.+|||-..+|. .....++..++..+..
T Consensus 1142 lRnPkILLLDEATSALDs---eSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDS---ESERVVQEALDRAMEG 1175 (1228)
T ss_pred HcCCCeeeeeccchhhhh---hhHHHHHHHHHHhhcC
Confidence 677889999999999998 6888888888887433
No 486
>KOG0057|consensus
Probab=92.91 E-value=1.8 Score=38.80 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEe
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIG 116 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 116 (226)
+..|+.+-+.|++|||||.. +-.++...+ .+.. |.....++-.--.+.+++.....+.....++
T Consensus 375 I~kGekVaIvG~nGsGKSTi-lr~LlrF~d-~sG~-----I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTI-LRLLLRFFD-YSGS-----ILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHHHhc-cCCc-----EEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 35578899999999999974 344455554 3332 3445555555555555555554444433333
No 487
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.90 E-value=0.47 Score=36.31 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=36.2
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC------CCCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP------KNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~------~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
.+..|.-.++.||+|+|||...+-.+....... ...+.+++++..-.. ..++.+.+..+....
T Consensus 28 ~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~ 96 (193)
T PF13481_consen 28 LLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY 96 (193)
T ss_dssp EE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS
T ss_pred cccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc
Confidence 334567789999999999986554444444311 113456777755444 667777777766433
No 488
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=92.88 E-value=0.38 Score=41.40 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=68.6
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe-EEEEecchhhhhh
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR-AHVIGKIQQAAEK 124 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 124 (226)
...|+.++|.|.+|+|||. +.+-+++.+.... -++|+++. .=-..+++.+ +.....+. ...+.-.+ ..
T Consensus 7 ~~~G~TLLIKG~PGTGKTt-faLelL~~l~~~~----~v~YISTR-Vd~d~vy~~y--~~~~~~i~~~~vlDatQ---d~ 75 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTT-FALELLNSLKDHG----NVMYISTR-VDQDTVYEMY--PWIEESIDPTNVLDATQ---DP 75 (484)
T ss_pred CCCCcEEEEecCCCCCcee-eehhhHHHHhccC----CeEEEEec-cCHHHHHHhh--hhhccccChhhhhhhcc---ch
Confidence 3568899999999999997 4566677765422 24676554 2222233333 11110111 11111110 11
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc-----C-ccchHHHHHHHHHhcCCCCceEEE
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA-----G-VRGFRDQLAVIYAACSGPNLKRGM 198 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~-----~-~~~~~~~i~~i~~~~~~~~~q~v~ 198 (226)
+.........+-=.-++.+.+++..-.. ..+--++|+|--+.+.+. + ...+....+.+.+........+++
T Consensus 76 ~~~~~~~~vp~~~l~~ds~~~f~~~i~~---~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~LIl 152 (484)
T PF07088_consen 76 FELPLDKDVPFERLDIDSFRDFVDKINE---AGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINLIL 152 (484)
T ss_pred hhccccccCcccccCHHHHHHHHHHhhh---cccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceEEE
Confidence 1111111111111236777777763111 245569999994443331 1 011222222222222345778888
Q ss_pred EeeeCch
Q psy12977 199 FSATHTE 205 (226)
Q Consensus 199 ~SAT~~~ 205 (226)
.|-+-..
T Consensus 153 VsEsa~~ 159 (484)
T PF07088_consen 153 VSESAEN 159 (484)
T ss_pred EEecCCC
Confidence 8877543
No 489
>PRK07004 replicative DNA helicase; Provisional
Probab=92.80 E-value=0.48 Score=41.95 Aligned_cols=26 Identities=23% Similarity=0.027 Sum_probs=18.6
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHS 73 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~ 73 (226)
.|.-+++.|.||+|||...+--+.+.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~ 237 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHH
Confidence 35567899999999998655444443
No 490
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.77 E-value=1.8 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCccEEEEcccccccccCccchHH-HHHHHHHhcCCC-CceEEEEee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRD-QLAVIYAACSGP-NLKRGMFSA 201 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~-~i~~i~~~~~~~-~~q~v~~SA 201 (226)
.+.+++++||.-.-+|. .... .+..++..+... ..++++.|-
T Consensus 138 ~~p~illlDEP~~~LD~---~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 138 SNCGILALDEPTTNLDE---ENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred cCCCEEEEcCCccccCH---HHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 56789999999988887 4556 677777666333 456665433
No 491
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.76 E-value=0.034 Score=46.51 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=35.6
Q ss_pred cCCCCcccccccCCCCCe-EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 34 KHFEPHFTITYLSPLGRQ-IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 34 ~~~~~~Q~~~~~~~~~~~-~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
..-++-|...+.....++ ++-.+|-|+|||+.......+.+....-. ++|..-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~--rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR--RIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc--eeeecCc
Confidence 344566766654444455 56889999999998777777777643333 5666556
No 492
>KOG0331|consensus
Probab=92.75 E-value=0.62 Score=41.53 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=64.7
Q ss_pred CchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC---CCcCCCCCE
Q psy12977 59 GSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG---PRSAQKFDV 135 (226)
Q Consensus 59 GsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~I 135 (226)
...|-. -+..++..+. ...+.++||.|.|+.-|.++...+... ++....++|+....++.. ....+++.|
T Consensus 322 ~~~K~~-~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~v 394 (519)
T KOG0331|consen 322 ETAKLR-KLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPV 394 (519)
T ss_pred HHHHHH-HHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcce
Confidence 444443 2344444444 334569999999999999988877665 577777777765554432 344788999
Q ss_pred EEECchHHHHhHhcCCCCCCCCCccEEEEccc
Q psy12977 136 LITTPNKLVYLLQMDPPALNLANVEWLIVDES 167 (226)
Q Consensus 136 iV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~ 167 (226)
+|+|--. . +.++..++++||-=+.
T Consensus 395 LVATdVA------a--RGLDi~dV~lVInydf 418 (519)
T KOG0331|consen 395 LVATDVA------A--RGLDVPDVDLVINYDF 418 (519)
T ss_pred EEEcccc------c--ccCCCccccEEEeCCC
Confidence 9999532 1 7899999999986443
No 493
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.73 E-value=0.27 Score=39.65 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCCC-eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 47 PLGR-QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 47 ~~~~-~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
..|+ -+.++|+.|||||...- .+...+.. +..++++.|...+..+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R-al~~s~~~----d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR-ALLASLNE----DQVAVVVIDKPTLSDA 93 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH-HHHHhcCC----CceEEEEecCcchhHH
Confidence 3344 67899999999998766 44444432 2234444454444443
No 494
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.48 Score=35.12 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=31.7
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
+.+++++||...-+|. .....+..++..+... .+.++++....+.+..+
T Consensus 98 ~~~i~ilDEp~~~lD~---~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDP---ASRERLLELLRELAEE-GRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCH---HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHh
Confidence 4679999999988876 4666776766665333 34555555555554444
No 495
>KOG2035|consensus
Probab=92.59 E-value=1 Score=37.09 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=39.3
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRR 213 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~ 213 (226)
...++.+|+-|+|.+..+ ....+.+.++.. ..++++++...+.++-+...=.+
T Consensus 125 qr~fKvvvi~ead~LT~d----AQ~aLRRTMEkY-s~~~RlIl~cns~SriIepIrSR 177 (351)
T KOG2035|consen 125 QRPFKVVVINEADELTRD----AQHALRRTMEKY-SSNCRLILVCNSTSRIIEPIRSR 177 (351)
T ss_pred ccceEEEEEechHhhhHH----HHHHHHHHHHHH-hcCceEEEEecCcccchhHHhhh
Confidence 446899999999998765 667788888877 57888888777766544444433
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.53 E-value=0.16 Score=42.48 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
...+.++++.||||||||... -.++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 446789999999999999753 3344433
No 497
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.49 E-value=1 Score=43.10 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.--++|+|++|.+.+. .....+..+++.. +++..+++.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~---~~~~~l~~l~~~~-~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNP---EIHEAMRFFLRHQ-PENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCCh---HHHHHHHHHHHhC-CCCeEEEEEeCCCC
Confidence 3358999999987544 4666888888777 56778888776644
No 498
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.45 E-value=1.3 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.3
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 366899999999999754
No 499
>KOG0741|consensus
Probab=92.42 E-value=0.087 Score=46.79 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.1
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+-+++-+|+|+|||+.+
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 77999999999999854
No 500
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.38 E-value=0.36 Score=40.49 Aligned_cols=41 Identities=20% Similarity=0.040 Sum_probs=25.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCC--CCCceEEEEcc
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPK--NLGFRAVIVCP 89 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~--~~~~~~iil~P 89 (226)
|.-+.+.||+|+|||...+..+.+...... ..+.+++|+.-
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 566789999999999755444444432211 12347888764
Done!