Query psy12977
Match_columns 226
No_of_seqs 127 out of 1418
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 15:59:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dkp_A Probable ATP-dependent 100.0 5.4E-39 1.8E-43 257.8 19.3 208 19-226 35-243 (245)
2 3fe2_A Probable ATP-dependent 100.0 1.4E-37 4.6E-42 249.4 15.3 201 18-225 34-239 (242)
3 3fmo_B ATP-dependent RNA helic 100.0 9.4E-37 3.2E-41 252.0 19.5 199 18-225 97-299 (300)
4 3bor_A Human initiation factor 100.0 2.6E-36 8.9E-41 241.2 17.0 200 19-225 36-236 (237)
5 1q0u_A Bstdead; DEAD protein, 100.0 5.4E-36 1.9E-40 236.5 18.1 199 19-225 10-213 (219)
6 3iuy_A Probable ATP-dependent 100.0 3.3E-36 1.1E-40 239.1 16.4 197 19-223 26-228 (228)
7 1vec_A ATP-dependent RNA helic 100.0 1.4E-35 4.8E-40 231.6 18.1 196 19-222 9-206 (206)
8 2oxc_A Probable ATP-dependent 100.0 7.7E-36 2.6E-40 237.4 16.8 198 19-224 30-229 (230)
9 1qde_A EIF4A, translation init 100.0 1.8E-35 6.3E-40 233.9 18.5 200 18-226 19-219 (224)
10 2pl3_A Probable ATP-dependent 100.0 8.6E-36 3E-40 237.8 15.4 201 19-226 31-235 (236)
11 3ber_A Probable ATP-dependent 100.0 2.5E-35 8.7E-40 237.3 16.9 201 18-225 48-249 (249)
12 1t6n_A Probable ATP-dependent 100.0 2.1E-35 7.1E-40 233.1 14.8 200 18-223 19-220 (220)
13 1wrb_A DJVLGB; RNA helicase, D 100.0 2.4E-35 8.3E-40 237.6 13.4 201 19-225 29-241 (253)
14 2gxq_A Heat resistant RNA depe 100.0 1.4E-34 4.8E-39 226.0 15.5 197 19-224 7-206 (207)
15 3ly5_A ATP-dependent RNA helic 100.0 1.6E-34 5.6E-39 234.2 14.1 196 20-221 61-261 (262)
16 2db3_A ATP-dependent RNA helic 100.0 4.8E-34 1.6E-38 246.9 16.0 201 18-224 61-267 (434)
17 2j0s_A ATP-dependent RNA helic 100.0 1.4E-31 4.7E-36 229.1 13.7 199 18-224 42-241 (410)
18 2i4i_A ATP-dependent RNA helic 100.0 3.4E-31 1.2E-35 226.9 16.0 200 19-224 21-241 (417)
19 3eiq_A Eukaryotic initiation f 100.0 3.2E-31 1.1E-35 226.7 15.7 201 18-225 45-246 (414)
20 3fmp_B ATP-dependent RNA helic 100.0 1.7E-30 5.7E-35 227.1 18.6 199 18-225 97-299 (479)
21 1xti_A Probable ATP-dependent 100.0 1.7E-30 5.7E-35 220.7 16.8 201 19-225 14-216 (391)
22 1fuu_A Yeast initiation factor 100.0 1.4E-30 4.9E-35 221.2 15.0 199 18-225 26-225 (394)
23 3fht_A ATP-dependent RNA helic 100.0 5.9E-30 2E-34 218.6 18.6 198 18-224 30-231 (412)
24 1s2m_A Putative ATP-dependent 100.0 4.5E-30 1.5E-34 218.9 16.9 199 18-224 26-225 (400)
25 3pey_A ATP-dependent RNA helic 100.0 7.2E-30 2.5E-34 216.6 17.5 195 19-224 11-208 (395)
26 1hv8_A Putative ATP-dependent 100.0 1.6E-29 5.6E-34 212.4 16.0 196 19-224 12-209 (367)
27 2z0m_A 337AA long hypothetical 100.0 3.8E-29 1.3E-33 208.0 17.7 186 22-222 3-189 (337)
28 3sqw_A ATP-dependent RNA helic 100.0 6.4E-30 2.2E-34 228.4 10.7 200 20-223 28-243 (579)
29 3i5x_A ATP-dependent RNA helic 100.0 2.1E-29 7.1E-34 224.2 11.6 200 20-223 79-294 (563)
30 3fho_A ATP-dependent RNA helic 100.0 3.5E-28 1.2E-32 214.1 18.1 195 20-225 126-323 (508)
31 2p6r_A Afuhel308 helicase; pro 99.9 1.3E-25 4.5E-30 204.6 19.5 183 20-216 10-193 (702)
32 3oiy_A Reverse gyrase helicase 99.9 4.2E-27 1.4E-31 201.9 8.1 178 22-208 8-209 (414)
33 2v1x_A ATP-dependent DNA helic 99.9 6.1E-26 2.1E-30 202.6 11.4 187 19-218 27-225 (591)
34 2zj8_A DNA helicase, putative 99.9 1.8E-25 6.1E-30 204.3 13.2 173 19-205 7-181 (720)
35 2va8_A SSO2462, SKI2-type heli 99.9 6E-25 2E-29 200.6 16.5 172 19-205 14-187 (715)
36 3l9o_A ATP-dependent RNA helic 99.9 3.5E-25 1.2E-29 209.4 15.3 174 27-222 176-352 (1108)
37 4f92_B U5 small nuclear ribonu 99.9 4.2E-25 1.5E-29 215.5 13.9 173 32-211 76-264 (1724)
38 4f92_B U5 small nuclear ribonu 99.9 2.1E-25 7.2E-30 217.6 11.3 184 22-212 913-1104(1724)
39 2xgj_A ATP-dependent RNA helic 99.9 5.6E-24 1.9E-28 199.6 16.6 171 29-222 81-254 (1010)
40 1oyw_A RECQ helicase, ATP-depe 99.9 1.2E-24 4E-29 192.1 11.3 187 19-220 8-203 (523)
41 3tbk_A RIG-I helicase domain; 99.9 2E-24 6.7E-29 190.8 12.8 166 35-205 4-176 (555)
42 2ykg_A Probable ATP-dependent 99.9 3.2E-24 1.1E-28 195.1 14.3 175 25-204 3-184 (696)
43 4a2p_A RIG-I, retinoic acid in 99.9 2.1E-24 7.1E-29 190.9 12.7 168 32-204 4-177 (556)
44 4ddu_A Reverse gyrase; topoiso 99.9 1.7E-24 5.9E-29 204.6 10.4 168 31-208 75-266 (1104)
45 3llm_A ATP-dependent RNA helic 99.9 2.3E-23 7.9E-28 165.9 14.0 168 35-221 61-233 (235)
46 4a2q_A RIG-I, retinoic acid in 99.9 2.4E-23 8.2E-28 192.1 15.4 170 30-204 243-418 (797)
47 3b6e_A Interferon-induced heli 99.9 2.2E-24 7.6E-29 168.7 7.1 168 30-202 28-216 (216)
48 1tf5_A Preprotein translocase 99.9 1.6E-23 5.5E-28 189.8 9.6 184 18-211 62-297 (844)
49 4a4z_A Antiviral helicase SKI2 99.9 4.8E-23 1.6E-27 193.2 13.1 161 35-215 39-202 (997)
50 1gku_B Reverse gyrase, TOP-RG; 99.9 2.3E-24 7.9E-29 203.4 3.6 172 28-218 51-239 (1054)
51 4a2w_A RIG-I, retinoic acid in 99.9 1.8E-22 6.2E-27 188.8 13.8 169 31-204 244-418 (936)
52 1wp9_A ATP-dependent RNA helic 99.9 6.1E-22 2.1E-26 171.3 14.3 167 35-213 9-179 (494)
53 1rif_A DAR protein, DNA helica 99.9 1.3E-22 4.5E-27 165.7 7.6 153 35-207 113-266 (282)
54 2fsf_A Preprotein translocase 99.9 2.8E-22 9.5E-27 181.4 8.8 165 17-190 52-239 (853)
55 2jlq_A Serine protease subunit 99.9 1.2E-21 4.3E-26 169.9 10.9 166 32-222 1-167 (451)
56 1nkt_A Preprotein translocase 99.9 1.1E-21 3.9E-26 177.8 10.8 187 17-213 89-327 (922)
57 2whx_A Serine protease/ntpase/ 99.9 3.4E-22 1.2E-26 179.2 6.4 188 9-223 147-335 (618)
58 2oca_A DAR protein, ATP-depend 99.9 5.8E-22 2E-26 174.2 7.6 154 34-207 112-266 (510)
59 4gl2_A Interferon-induced heli 99.8 2.2E-22 7.6E-27 183.0 4.3 167 35-205 7-193 (699)
60 1gm5_A RECG; helicase, replica 99.8 1.2E-21 4.2E-26 179.0 8.9 164 26-210 360-533 (780)
61 3o8b_A HCV NS3 protease/helica 99.8 4.5E-20 1.5E-24 165.3 15.4 145 35-206 217-363 (666)
62 2eyq_A TRCF, transcription-rep 99.8 3E-20 1E-24 176.5 13.2 173 29-222 598-780 (1151)
63 2fwr_A DNA repair protein RAD2 99.8 6.7E-20 2.3E-24 159.6 11.1 135 35-204 93-229 (472)
64 2fz4_A DNA repair protein RAD2 99.8 1.9E-19 6.4E-24 143.5 11.4 137 35-206 93-231 (237)
65 1yks_A Genome polyprotein [con 99.8 1.1E-20 3.6E-25 163.6 2.4 139 45-211 4-148 (440)
66 2z83_A Helicase/nucleoside tri 99.8 4.9E-19 1.7E-23 153.9 10.9 144 45-210 17-160 (459)
67 2ipc_A Preprotein translocase 99.8 1.1E-18 3.9E-23 158.2 13.1 146 18-173 58-217 (997)
68 3h1t_A Type I site-specific re 99.8 2E-19 6.8E-24 160.8 7.4 166 35-219 178-357 (590)
69 2wv9_A Flavivirin protease NS2 99.8 1.9E-19 6.6E-24 162.6 7.2 162 28-211 203-381 (673)
70 2v6i_A RNA helicase; membrane, 99.8 9.6E-19 3.3E-23 150.9 11.0 140 48-209 1-140 (431)
71 2xau_A PRE-mRNA-splicing facto 99.7 2.9E-18 9.9E-23 157.3 10.5 186 21-226 80-270 (773)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 1.9E-17 6.6E-22 155.2 8.1 156 34-205 270-440 (1038)
73 3rc3_A ATP-dependent RNA helic 99.7 5.9E-16 2E-20 139.7 16.0 139 45-212 151-289 (677)
74 3crv_A XPD/RAD3 related DNA he 99.6 1.2E-16 4E-21 141.9 6.3 129 35-172 3-187 (551)
75 2vl7_A XPD; helicase, unknown 99.6 1.4E-15 4.8E-20 134.6 7.4 128 32-171 5-188 (540)
76 1z63_A Helicase of the SNF2/RA 99.6 5.8E-15 2E-19 129.3 9.4 147 35-204 37-188 (500)
77 3dmq_A RNA polymerase-associat 99.6 3.1E-15 1.1E-19 140.4 7.8 159 35-204 153-317 (968)
78 1z3i_X Similar to RAD54-like; 99.4 4.7E-12 1.6E-16 114.2 15.3 157 35-204 55-231 (644)
79 3mwy_W Chromo domain-containin 99.4 1.3E-12 4.6E-17 120.5 9.8 151 47-212 253-418 (800)
80 3jux_A Protein translocase sub 99.1 6E-11 2.1E-15 106.4 7.2 149 17-171 53-258 (822)
81 1w36_D RECD, exodeoxyribonucle 98.9 4.2E-09 1.4E-13 94.4 10.6 144 37-202 151-298 (608)
82 4a15_A XPD helicase, ATP-depen 98.8 4.5E-09 1.5E-13 94.3 7.1 70 45-117 18-87 (620)
83 3e1s_A Exodeoxyribonuclease V, 98.3 4.2E-06 1.4E-10 74.4 10.3 125 36-202 190-315 (574)
84 4b3f_X DNA-binding protein smu 98.3 6.6E-07 2.2E-11 80.7 4.9 65 36-104 190-256 (646)
85 3upu_A ATP-dependent DNA helic 98.2 6.9E-06 2.3E-10 71.1 9.1 72 27-101 17-94 (459)
86 2gk6_A Regulator of nonsense t 98.2 2.5E-06 8.6E-11 76.6 6.4 66 36-104 181-247 (624)
87 2xzl_A ATP-dependent helicase 98.0 6.9E-06 2.4E-10 75.7 7.0 67 35-104 360-427 (802)
88 2wjy_A Regulator of nonsense t 98.0 9.3E-06 3.2E-10 74.8 6.9 66 36-104 357-423 (800)
89 3lfu_A DNA helicase II; SF1 he 97.8 3.5E-05 1.2E-09 69.2 7.0 72 33-105 7-78 (647)
90 1l8q_A Chromosomal replication 97.7 0.00015 5.2E-09 59.5 9.4 41 159-201 99-139 (324)
91 3ec2_A DNA replication protein 97.6 0.00023 8E-09 53.1 8.4 46 158-206 100-146 (180)
92 2kjq_A DNAA-related protein; s 97.5 0.00011 3.8E-09 53.6 5.0 19 48-66 35-53 (149)
93 2chg_A Replication factor C sm 97.4 0.0011 3.9E-08 50.3 10.0 41 157-202 101-141 (226)
94 1d2n_A N-ethylmaleimide-sensit 97.4 0.0015 5E-08 52.1 10.6 19 49-67 64-82 (272)
95 2b8t_A Thymidine kinase; deoxy 97.4 0.002 6.9E-08 50.1 11.0 115 47-201 10-124 (223)
96 2orw_A Thymidine kinase; TMTK, 97.4 0.00086 2.9E-08 50.6 8.6 40 48-91 2-41 (184)
97 2z4s_A Chromosomal replication 97.3 0.00076 2.6E-08 57.9 8.8 47 158-206 194-240 (440)
98 3vkw_A Replicase large subunit 97.3 0.00077 2.6E-08 57.7 8.3 87 48-170 160-246 (446)
99 3te6_A Regulatory protein SIR3 97.2 0.0034 1.2E-07 51.5 11.1 26 48-74 44-69 (318)
100 3bos_A Putative DNA replicatio 97.2 0.0012 4E-08 51.1 7.4 19 48-66 51-69 (242)
101 1xx6_A Thymidine kinase; NESG, 97.1 0.002 6.8E-08 48.9 8.3 40 48-91 7-46 (191)
102 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0005 1.7E-08 62.7 5.5 74 32-106 8-81 (724)
103 1njg_A DNA polymerase III subu 97.1 0.018 6.1E-07 44.0 13.7 40 157-201 125-164 (250)
104 2w58_A DNAI, primosome compone 97.1 0.0011 3.8E-08 50.3 6.3 24 50-74 55-78 (202)
105 2o0j_A Terminase, DNA packagin 97.0 0.0011 3.7E-08 55.9 5.8 145 35-199 163-310 (385)
106 2dr3_A UPF0273 protein PH0284; 96.9 0.0012 4.1E-08 51.5 5.4 51 47-102 21-71 (247)
107 3u61_B DNA polymerase accessor 96.9 0.0036 1.2E-07 51.0 8.5 41 158-202 105-145 (324)
108 2qby_B CDC6 homolog 3, cell di 96.9 0.0044 1.5E-07 51.6 9.1 18 49-66 45-62 (384)
109 3syl_A Protein CBBX; photosynt 96.9 0.0059 2E-07 49.3 9.5 20 48-67 66-85 (309)
110 2qby_A CDC6 homolog 1, cell di 96.9 0.0042 1.4E-07 51.4 8.8 43 159-201 129-171 (386)
111 3n70_A Transport activator; si 96.8 0.0045 1.5E-07 44.5 7.5 20 47-66 22-41 (145)
112 4b4t_J 26S protease regulatory 96.8 0.005 1.7E-07 52.0 8.4 18 49-66 182-199 (405)
113 3eie_A Vacuolar protein sortin 96.8 0.0095 3.3E-07 48.7 9.9 18 49-66 51-68 (322)
114 3cpe_A Terminase, DNA packagin 96.8 0.0041 1.4E-07 55.4 8.2 72 36-109 164-236 (592)
115 1uaa_A REP helicase, protein ( 96.8 0.0012 4.2E-08 59.6 4.9 71 35-106 2-72 (673)
116 1sxj_D Activator 1 41 kDa subu 96.8 0.0033 1.1E-07 51.7 7.1 40 157-201 132-171 (353)
117 3co5_A Putative two-component 96.7 0.0071 2.4E-07 43.3 8.1 43 160-206 77-119 (143)
118 1sxj_E Activator 1 40 kDa subu 96.7 0.012 4E-07 48.5 10.5 42 157-203 133-174 (354)
119 1iqp_A RFCS; clamp loader, ext 96.7 0.006 2.1E-07 49.4 8.4 39 157-200 109-147 (327)
120 2bjv_A PSP operon transcriptio 96.7 0.018 6.3E-07 45.4 10.9 20 47-66 27-46 (265)
121 1a5t_A Delta prime, HOLB; zinc 96.7 0.013 4.4E-07 48.2 10.3 41 156-201 106-146 (334)
122 2p65_A Hypothetical protein PF 96.7 0.058 2E-06 39.4 13.1 19 49-67 43-61 (187)
123 3kl4_A SRP54, signal recogniti 96.7 0.021 7E-07 48.8 11.6 135 49-215 97-235 (433)
124 2j9r_A Thymidine kinase; TK1, 96.7 0.0079 2.7E-07 46.4 8.2 41 48-92 27-67 (214)
125 2qgz_A Helicase loader, putati 96.7 0.00071 2.4E-08 55.3 2.4 19 49-67 152-170 (308)
126 2v1u_A Cell division control p 96.7 0.0052 1.8E-07 50.9 7.7 19 48-66 43-61 (387)
127 1fnn_A CDC6P, cell division co 96.6 0.0049 1.7E-07 51.3 7.5 35 51-88 46-80 (389)
128 1jr3_A DNA polymerase III subu 96.6 0.019 6.6E-07 47.4 11.0 40 156-200 117-156 (373)
129 1w4r_A Thymidine kinase; type 96.6 0.012 4.1E-07 44.6 8.5 39 48-90 19-57 (195)
130 2qp9_X Vacuolar protein sortin 96.5 0.0093 3.2E-07 49.6 8.5 18 49-66 84-101 (355)
131 3u4q_A ATP-dependent helicase/ 96.5 0.0039 1.3E-07 60.2 6.8 70 35-105 10-81 (1232)
132 3h4m_A Proteasome-activating n 96.5 0.03 1E-06 44.5 11.0 20 47-66 49-68 (285)
133 1jbk_A CLPB protein; beta barr 96.5 0.08 2.7E-06 38.7 12.7 18 49-66 43-60 (195)
134 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0083 2.8E-07 49.2 7.7 18 49-66 45-62 (322)
135 2iut_A DNA translocase FTSK; n 96.5 0.03 1E-06 49.4 11.5 60 160-219 345-405 (574)
136 3e2i_A Thymidine kinase; Zn-bi 96.4 0.022 7.6E-07 43.9 9.3 41 48-92 27-67 (219)
137 3vfd_A Spastin; ATPase, microt 96.4 0.0096 3.3E-07 50.0 7.8 19 48-66 147-165 (389)
138 2gno_A DNA polymerase III, gam 96.3 0.035 1.2E-06 45.1 10.3 44 156-205 80-123 (305)
139 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.028 9.6E-07 42.9 9.4 22 47-68 21-42 (235)
140 4b4t_H 26S protease regulatory 96.3 0.013 4.4E-07 50.4 7.8 18 49-66 243-260 (467)
141 3pfi_A Holliday junction ATP-d 96.3 0.019 6.5E-07 47.0 8.7 17 50-66 56-72 (338)
142 3dm5_A SRP54, signal recogniti 96.3 0.11 3.7E-06 44.5 13.5 134 49-215 100-236 (443)
143 1sxj_C Activator 1 40 kDa subu 96.2 0.015 5.3E-07 47.7 7.9 39 157-200 109-147 (340)
144 2orv_A Thymidine kinase; TP4A 96.0 0.024 8.1E-07 44.2 7.5 41 48-92 18-58 (234)
145 1c4o_A DNA nucleotide excision 95.8 0.017 5.8E-07 52.1 6.9 65 35-106 8-78 (664)
146 1sxj_B Activator 1 37 kDa subu 95.8 0.018 6.2E-07 46.4 6.5 39 158-201 107-145 (323)
147 1sxj_A Activator 1 95 kDa subu 95.7 0.015 5.2E-07 50.8 6.0 43 157-203 147-189 (516)
148 1g5t_A COB(I)alamin adenosyltr 95.6 0.023 8E-07 43.1 6.0 138 48-211 27-171 (196)
149 2zan_A Vacuolar protein sortin 95.6 0.031 1.1E-06 47.8 7.6 18 49-66 167-184 (444)
150 3pvs_A Replication-associated 95.6 0.022 7.4E-07 48.9 6.4 18 50-67 51-68 (447)
151 2chq_A Replication factor C sm 95.6 0.019 6.3E-07 46.3 5.7 16 51-66 40-55 (319)
152 1nlf_A Regulatory protein REPA 95.2 0.19 6.7E-06 39.8 10.6 25 46-70 27-51 (279)
153 3hjh_A Transcription-repair-co 95.1 0.096 3.3E-06 45.4 9.0 53 47-106 12-64 (483)
154 2r6a_A DNAB helicase, replicat 95.1 0.19 6.4E-06 43.1 10.8 40 46-88 200-239 (454)
155 2d7d_A Uvrabc system protein B 95.1 0.068 2.3E-06 48.2 8.1 50 50-106 33-82 (661)
156 3bh0_A DNAB-like replicative h 94.9 0.46 1.6E-05 38.5 12.2 51 47-102 66-116 (315)
157 1xp8_A RECA protein, recombina 94.9 0.028 9.6E-07 47.0 4.7 39 48-90 73-111 (366)
158 2ehv_A Hypothetical protein PH 94.9 0.0024 8.1E-08 49.8 -1.8 22 47-68 28-49 (251)
159 1n0w_A DNA repair protein RAD5 94.8 0.072 2.5E-06 41.0 6.8 43 47-89 22-66 (243)
160 3hu3_A Transitional endoplasmi 94.8 0.17 5.8E-06 43.9 9.7 20 47-66 236-255 (489)
161 1t5i_A C_terminal domain of A 94.8 0.38 1.3E-05 35.2 10.4 119 81-216 31-152 (172)
162 3cmu_A Protein RECA, recombina 94.7 0.031 1.1E-06 56.1 5.2 42 48-93 1426-1467(2050)
163 2zts_A Putative uncharacterize 94.6 0.0025 8.4E-08 49.7 -2.2 51 49-103 30-80 (251)
164 3k1j_A LON protease, ATP-depen 94.4 0.52 1.8E-05 41.9 12.1 21 46-66 57-77 (604)
165 2zr9_A Protein RECA, recombina 94.4 0.02 6.7E-07 47.6 2.7 39 48-90 60-98 (349)
166 1w5s_A Origin recognition comp 94.2 0.042 1.4E-06 45.9 4.4 20 48-67 49-70 (412)
167 2zpa_A Uncharacterized protein 94.2 0.063 2.2E-06 48.3 5.6 43 50-99 193-235 (671)
168 2q6t_A DNAB replication FORK h 94.1 0.061 2.1E-06 46.0 5.1 40 47-89 198-237 (444)
169 3cf2_A TER ATPase, transitiona 94.0 0.042 1.4E-06 50.6 4.3 18 49-66 238-255 (806)
170 2px0_A Flagellar biosynthesis 94.0 0.098 3.3E-06 42.3 6.0 21 48-68 104-124 (296)
171 2i1q_A DNA repair and recombin 94.0 0.083 2.8E-06 43.0 5.6 57 48-104 97-166 (322)
172 1v5w_A DMC1, meiotic recombina 93.8 0.14 4.8E-06 42.2 6.8 44 48-91 121-166 (343)
173 3pxi_A Negative regulator of g 93.8 0.41 1.4E-05 43.7 10.4 17 51-67 523-539 (758)
174 1vma_A Cell division protein F 93.7 1.5 5.2E-05 35.4 12.7 21 48-68 103-123 (306)
175 3cf2_A TER ATPase, transitiona 93.6 0.15 5.2E-06 46.9 7.1 55 159-213 571-635 (806)
176 3hr8_A Protein RECA; alpha and 93.4 0.054 1.8E-06 45.0 3.5 39 49-91 61-99 (356)
177 2fna_A Conserved hypothetical 93.1 2.5 8.4E-05 34.0 13.2 40 160-201 139-178 (357)
178 2hjv_A ATP-dependent RNA helic 93.0 0.74 2.5E-05 33.2 8.9 75 81-167 35-112 (163)
179 2rb4_A ATP-dependent RNA helic 92.9 1.9 6.6E-05 31.3 11.6 75 81-167 34-111 (175)
180 4a74_A DNA repair and recombin 92.5 0.39 1.3E-05 36.4 7.2 22 47-68 23-44 (231)
181 3io5_A Recombination and repai 92.4 0.17 5.8E-06 41.4 5.0 93 48-171 28-124 (333)
182 2p6n_A ATP-dependent RNA helic 92.3 0.62 2.1E-05 34.8 7.9 75 81-167 54-131 (191)
183 1ls1_A Signal recognition part 92.2 3.4 0.00012 33.0 12.6 20 48-67 97-116 (295)
184 1qvr_A CLPB protein; coiled co 92.1 0.11 3.6E-06 48.3 4.0 19 49-67 191-209 (854)
185 1q57_A DNA primase/helicase; d 91.9 1.1 3.8E-05 38.7 10.1 52 46-101 239-290 (503)
186 3e70_C DPA, signal recognition 91.8 3.5 0.00012 33.6 12.4 53 159-214 212-264 (328)
187 2d7d_A Uvrabc system protein B 91.6 1.6 5.4E-05 39.3 11.0 78 81-170 445-525 (661)
188 3cmw_A Protein RECA, recombina 91.2 0.22 7.4E-06 49.5 5.2 94 49-173 1431-1524(1706)
189 4b4t_M 26S protease regulatory 91.2 0.14 4.7E-06 43.8 3.3 18 49-66 215-232 (434)
190 1qvr_A CLPB protein; coiled co 91.1 0.79 2.7E-05 42.5 8.7 18 50-67 589-606 (854)
191 3pey_A ATP-dependent RNA helic 91.0 0.92 3.2E-05 37.1 8.3 126 81-219 243-373 (395)
192 1e9r_A Conjugal transfer prote 90.8 0.26 9E-06 41.7 4.8 19 48-66 52-70 (437)
193 1c4o_A DNA nucleotide excision 90.6 7.6 0.00026 34.8 14.4 105 81-199 439-546 (664)
194 1xti_A Probable ATP-dependent 90.6 1 3.5E-05 36.9 8.2 76 81-168 250-328 (391)
195 1fuk_A Eukaryotic initiation f 90.3 0.76 2.6E-05 33.2 6.4 76 81-168 30-108 (165)
196 4b4t_L 26S protease subunit RP 90.3 0.18 6.3E-06 43.0 3.3 18 49-66 215-232 (437)
197 1tue_A Replication protein E1; 90.2 0.21 7.1E-06 38.2 3.3 25 49-74 58-82 (212)
198 4b4t_K 26S protease regulatory 90.1 0.2 6.8E-06 42.7 3.4 18 49-66 206-223 (428)
199 2qz4_A Paraplegin; AAA+, SPG7, 89.8 0.19 6.6E-06 39.1 3.0 19 48-66 38-56 (262)
200 1kgd_A CASK, peripheral plasma 89.8 0.2 6.7E-06 37.0 2.8 20 47-66 3-22 (180)
201 3cf0_A Transitional endoplasmi 89.7 0.2 6.8E-06 40.3 3.0 20 47-66 47-66 (301)
202 3b9p_A CG5977-PA, isoform A; A 89.7 0.18 6.2E-06 40.2 2.7 19 48-66 53-71 (297)
203 1qhx_A CPT, protein (chloramph 89.5 0.21 7.2E-06 36.4 2.8 18 49-66 3-20 (178)
204 3cmu_A Protein RECA, recombina 89.2 0.42 1.4E-05 48.2 5.3 40 48-91 382-421 (2050)
205 2jgn_A DBX, DDX3, ATP-dependen 89.1 0.83 2.8E-05 33.8 5.9 92 59-167 29-123 (185)
206 2ius_A DNA translocase FTSK; n 89.0 0.6 2E-05 40.7 5.6 61 161-221 300-361 (512)
207 3hws_A ATP-dependent CLP prote 88.9 0.21 7.1E-06 41.3 2.6 19 48-66 50-68 (363)
208 1ofh_A ATP-dependent HSL prote 88.9 0.21 7.3E-06 39.8 2.6 19 48-66 49-67 (310)
209 3uk6_A RUVB-like 2; hexameric 88.8 0.19 6.4E-06 41.4 2.3 25 49-74 70-94 (368)
210 1w36_B RECB, exodeoxyribonucle 88.6 1.1 3.6E-05 43.2 7.6 56 50-105 17-80 (1180)
211 4b4t_I 26S protease regulatory 88.5 0.5 1.7E-05 40.2 4.7 18 49-66 216-233 (437)
212 4ag6_A VIRB4 ATPase, type IV s 88.3 0.48 1.7E-05 39.5 4.5 47 158-204 262-308 (392)
213 1ex7_A Guanylate kinase; subst 88.2 0.26 8.7E-06 37.0 2.5 17 50-66 2-18 (186)
214 3eaq_A Heat resistant RNA depe 88.1 1.8 6.1E-05 32.7 7.3 74 81-166 31-107 (212)
215 3iij_A Coilin-interacting nucl 88.0 0.33 1.1E-05 35.5 2.9 21 47-67 9-29 (180)
216 1lv7_A FTSH; alpha/beta domain 87.8 0.27 9.3E-06 38.3 2.5 18 49-66 45-62 (257)
217 3i5x_A ATP-dependent RNA helic 87.8 7.5 0.00026 33.7 12.1 80 80-168 338-420 (563)
218 4f4c_A Multidrug resistance pr 87.8 0.66 2.2E-05 45.2 5.6 31 156-189 1233-1263(1321)
219 3t15_A Ribulose bisphosphate c 87.8 0.23 7.9E-06 39.8 2.1 17 50-66 37-53 (293)
220 3trf_A Shikimate kinase, SK; a 87.7 0.3 1E-05 35.9 2.6 19 49-67 5-23 (185)
221 3nbx_X ATPase RAVA; AAA+ ATPas 87.7 0.14 4.8E-06 44.6 0.8 22 45-66 37-58 (500)
222 3vaa_A Shikimate kinase, SK; s 87.7 0.31 1E-05 36.5 2.7 20 47-66 23-42 (199)
223 1zp6_A Hypothetical protein AT 87.6 0.26 8.8E-06 36.4 2.2 20 47-66 7-26 (191)
224 2eyu_A Twitching motility prot 87.6 0.36 1.2E-05 38.2 3.1 20 46-65 22-41 (261)
225 1p9r_A General secretion pathw 87.5 0.63 2.2E-05 39.4 4.7 27 48-75 166-192 (418)
226 3tau_A Guanylate kinase, GMP k 87.5 0.32 1.1E-05 36.7 2.7 19 48-66 7-25 (208)
227 2j41_A Guanylate kinase; GMP, 87.4 0.34 1.2E-05 36.1 2.8 20 47-66 4-23 (207)
228 2r44_A Uncharacterized protein 87.4 0.27 9.1E-06 39.9 2.3 45 22-66 15-63 (331)
229 2cvh_A DNA repair and recombin 87.4 0.54 1.8E-05 35.3 4.0 36 47-89 18-53 (220)
230 2qor_A Guanylate kinase; phosp 87.1 0.37 1.3E-05 36.2 2.8 20 47-66 10-29 (204)
231 3fht_A ATP-dependent RNA helic 86.8 2 7E-05 35.3 7.5 75 81-167 266-343 (412)
232 1um8_A ATP-dependent CLP prote 86.8 0.33 1.1E-05 40.2 2.6 19 48-66 71-89 (376)
233 1kht_A Adenylate kinase; phosp 86.8 0.36 1.2E-05 35.4 2.5 18 49-66 3-20 (192)
234 3ney_A 55 kDa erythrocyte memb 86.6 0.42 1.4E-05 36.1 2.9 20 47-66 17-36 (197)
235 2c9o_A RUVB-like 1; hexameric 86.6 0.42 1.4E-05 40.9 3.2 26 48-74 62-87 (456)
236 2oap_1 GSPE-2, type II secreti 86.6 0.3 1E-05 42.6 2.3 27 47-74 258-284 (511)
237 1yks_A Genome polyprotein [con 86.6 1.9 6.4E-05 36.6 7.3 70 81-164 177-246 (440)
238 1lvg_A Guanylate kinase, GMP k 86.6 0.34 1.1E-05 36.4 2.3 19 48-66 3-21 (198)
239 3lw7_A Adenylate kinase relate 86.5 0.32 1.1E-05 35.0 2.1 16 51-66 3-18 (179)
240 1ojl_A Transcriptional regulat 86.5 0.35 1.2E-05 39.0 2.6 20 47-66 23-42 (304)
241 2z43_A DNA repair and recombin 86.5 0.84 2.9E-05 37.1 4.9 56 48-103 106-164 (324)
242 1kag_A SKI, shikimate kinase I 86.5 0.37 1.3E-05 34.9 2.4 18 49-66 4-21 (173)
243 2i4i_A ATP-dependent RNA helic 86.4 3 0.0001 34.5 8.4 75 80-166 275-352 (417)
244 3sqw_A ATP-dependent RNA helic 86.4 9.4 0.00032 33.3 11.9 80 80-168 287-369 (579)
245 3exa_A TRNA delta(2)-isopenten 86.4 0.36 1.2E-05 39.4 2.5 17 50-66 4-20 (322)
246 2qmh_A HPR kinase/phosphorylas 86.3 0.36 1.2E-05 36.7 2.4 20 47-66 32-51 (205)
247 1y63_A LMAJ004144AAA protein; 86.3 0.42 1.4E-05 35.2 2.7 19 48-66 9-27 (184)
248 3tr0_A Guanylate kinase, GMP k 86.3 0.41 1.4E-05 35.7 2.7 19 48-66 6-24 (205)
249 3bgw_A DNAB-like replicative h 85.9 0.96 3.3E-05 38.6 5.0 39 47-89 195-233 (444)
250 3qf4_B Uncharacterized ABC tra 85.8 0.8 2.7E-05 40.6 4.7 46 156-206 507-552 (598)
251 3d8b_A Fidgetin-like protein 1 85.8 0.43 1.5E-05 39.4 2.8 20 48-67 116-135 (357)
252 3a8t_A Adenylate isopentenyltr 85.7 0.41 1.4E-05 39.4 2.5 17 50-66 41-57 (339)
253 2j0s_A ATP-dependent RNA helic 85.6 3.1 0.00011 34.3 8.0 74 82-167 277-353 (410)
254 1u94_A RECA protein, recombina 85.6 0.86 2.9E-05 37.7 4.5 39 48-90 62-100 (356)
255 4gp7_A Metallophosphoesterase; 85.5 0.4 1.4E-05 35.0 2.2 21 47-67 7-27 (171)
256 2r62_A Cell division protease 85.5 0.2 6.8E-06 39.3 0.6 19 49-67 44-62 (268)
257 4fcw_A Chaperone protein CLPB; 85.5 0.39 1.3E-05 38.4 2.3 18 50-67 48-65 (311)
258 3a00_A Guanylate kinase, GMP k 85.5 0.45 1.5E-05 35.2 2.5 17 50-66 2-18 (186)
259 1ly1_A Polynucleotide kinase; 85.4 0.4 1.4E-05 34.8 2.2 17 50-66 3-19 (181)
260 1knq_A Gluconate kinase; ALFA/ 85.3 0.44 1.5E-05 34.6 2.4 19 48-66 7-25 (175)
261 3b5x_A Lipid A export ATP-bind 85.1 1.3 4.4E-05 39.1 5.6 42 156-202 496-537 (582)
262 4eun_A Thermoresistant glucoki 84.8 0.53 1.8E-05 35.2 2.7 19 48-66 28-46 (200)
263 3kb2_A SPBC2 prophage-derived 84.8 0.45 1.5E-05 34.2 2.2 16 51-66 3-18 (173)
264 2gza_A Type IV secretion syste 84.8 0.42 1.4E-05 39.6 2.3 21 45-65 171-191 (361)
265 2ewv_A Twitching motility prot 84.7 0.6 2.1E-05 38.9 3.2 21 46-66 133-153 (372)
266 1hqc_A RUVB; extended AAA-ATPa 84.6 0.36 1.2E-05 38.8 1.7 18 49-66 38-55 (324)
267 1ixz_A ATP-dependent metallopr 84.6 0.52 1.8E-05 36.6 2.6 17 50-66 50-66 (254)
268 1s96_A Guanylate kinase, GMP k 84.4 0.56 1.9E-05 35.9 2.7 21 46-66 13-33 (219)
269 1g8p_A Magnesium-chelatase 38 84.4 0.31 1.1E-05 39.6 1.3 18 49-66 45-62 (350)
270 2v1x_A ATP-dependent DNA helic 84.2 4.8 0.00016 35.6 8.9 76 80-167 266-344 (591)
271 2r8r_A Sensor protein; KDPD, P 84.2 1.2 4.3E-05 34.3 4.5 25 51-75 8-32 (228)
272 1z6g_A Guanylate kinase; struc 84.2 0.57 1.9E-05 35.7 2.6 22 45-66 19-40 (218)
273 3jvv_A Twitching mobility prot 84.1 0.6 2.1E-05 38.7 2.9 26 48-74 122-147 (356)
274 1gvn_B Zeta; postsegregational 84.1 1.3 4.4E-05 35.3 4.8 19 48-66 32-50 (287)
275 2ze6_A Isopentenyl transferase 84.1 0.47 1.6E-05 37.1 2.2 16 51-66 3-18 (253)
276 3u4q_B ATP-dependent helicase/ 83.9 0.73 2.5E-05 44.2 3.7 39 53-92 5-43 (1166)
277 3cm0_A Adenylate kinase; ATP-b 83.7 0.45 1.5E-05 34.9 1.8 19 48-66 3-21 (186)
278 4f4c_A Multidrug resistance pr 83.7 2.3 7.7E-05 41.5 7.0 31 156-189 570-600 (1321)
279 3foz_A TRNA delta(2)-isopenten 83.6 0.53 1.8E-05 38.3 2.3 17 50-66 11-27 (316)
280 2r2a_A Uncharacterized protein 83.6 0.8 2.7E-05 34.6 3.2 52 159-212 88-141 (199)
281 1oyw_A RECQ helicase, ATP-depe 83.6 2.7 9.4E-05 36.5 7.0 75 81-167 236-313 (523)
282 2ffh_A Protein (FFH); SRP54, s 83.5 19 0.00066 30.4 14.0 21 48-68 97-117 (425)
283 1s2m_A Putative ATP-dependent 83.5 3.7 0.00013 33.7 7.6 75 81-167 258-335 (400)
284 1hv8_A Putative ATP-dependent 83.5 2.6 9E-05 33.9 6.6 76 80-167 237-315 (367)
285 4a15_A XPD helicase, ATP-depen 83.4 0.28 9.5E-06 43.9 0.6 44 130-173 173-219 (620)
286 1tev_A UMP-CMP kinase; ploop, 83.1 0.57 1.9E-05 34.4 2.2 18 49-66 3-20 (196)
287 2x8a_A Nuclear valosin-contain 83.1 0.64 2.2E-05 36.9 2.6 17 50-66 45-61 (274)
288 3qf4_A ABC transporter, ATP-bi 83.1 0.48 1.7E-05 42.0 2.0 42 156-202 495-536 (587)
289 4a1f_A DNAB helicase, replicat 83.1 1.6 5.4E-05 35.9 5.0 50 47-101 44-93 (338)
290 2pt7_A CAG-ALFA; ATPase, prote 82.9 0.54 1.9E-05 38.5 2.1 19 47-65 169-187 (330)
291 2rhm_A Putative kinase; P-loop 82.8 0.57 1.9E-05 34.4 2.1 18 49-66 5-22 (193)
292 3uie_A Adenylyl-sulfate kinase 82.8 0.64 2.2E-05 34.7 2.4 20 47-66 23-42 (200)
293 2j37_W Signal recognition part 82.7 23 0.00079 30.6 12.9 19 50-68 102-120 (504)
294 1znw_A Guanylate kinase, GMP k 82.6 0.76 2.6E-05 34.5 2.7 21 46-66 17-37 (207)
295 1u0j_A DNA replication protein 82.3 1 3.4E-05 35.8 3.4 17 51-67 106-122 (267)
296 2l8b_A Protein TRAI, DNA helic 82.0 0.62 2.1E-05 34.8 1.9 108 49-202 51-158 (189)
297 4ag6_A VIRB4 ATPase, type IV s 82.0 1.4 4.9E-05 36.6 4.5 25 48-72 34-58 (392)
298 1in4_A RUVB, holliday junction 81.9 0.88 3E-05 37.1 3.0 18 50-67 52-69 (334)
299 1iy2_A ATP-dependent metallopr 81.7 0.76 2.6E-05 36.2 2.6 17 50-66 74-90 (278)
300 1c9k_A COBU, adenosylcobinamid 81.6 4.8 0.00016 29.8 6.7 45 52-104 2-46 (180)
301 2bdt_A BH3686; alpha-beta prot 81.5 0.58 2E-05 34.4 1.7 19 49-67 2-20 (189)
302 2plr_A DTMP kinase, probable t 81.5 0.79 2.7E-05 34.1 2.5 19 48-66 3-21 (213)
303 1zuh_A Shikimate kinase; alpha 81.3 0.82 2.8E-05 32.9 2.4 18 50-67 8-25 (168)
304 3fb4_A Adenylate kinase; psych 81.2 0.77 2.6E-05 34.5 2.3 16 51-66 2-17 (216)
305 2c95_A Adenylate kinase 1; tra 81.1 0.8 2.7E-05 33.7 2.3 19 48-66 8-26 (196)
306 3pxg_A Negative regulator of g 81.1 0.77 2.6E-05 39.4 2.5 26 48-74 200-225 (468)
307 3dl0_A Adenylate kinase; phosp 81.0 0.79 2.7E-05 34.5 2.3 16 51-66 2-17 (216)
308 3t61_A Gluconokinase; PSI-biol 80.9 0.75 2.6E-05 34.3 2.2 17 50-66 19-35 (202)
309 2db3_A ATP-dependent RNA helic 80.8 4.5 0.00015 34.0 7.2 72 83-166 302-376 (434)
310 2v54_A DTMP kinase, thymidylat 80.7 0.97 3.3E-05 33.5 2.7 19 48-66 3-21 (204)
311 1via_A Shikimate kinase; struc 80.7 0.83 2.8E-05 33.2 2.3 17 50-66 5-21 (175)
312 1g41_A Heat shock protein HSLU 80.5 0.91 3.1E-05 38.8 2.7 18 49-66 50-67 (444)
313 2wv9_A Flavivirin protease NS2 80.4 5.5 0.00019 35.8 7.9 70 81-164 410-479 (673)
314 3lnc_A Guanylate kinase, GMP k 80.2 0.76 2.6E-05 35.1 2.0 21 46-66 24-44 (231)
315 2iyv_A Shikimate kinase, SK; t 80.2 0.94 3.2E-05 33.1 2.4 17 50-66 3-19 (184)
316 2qt1_A Nicotinamide riboside k 80.0 0.93 3.2E-05 33.9 2.4 20 47-66 19-38 (207)
317 3crm_A TRNA delta(2)-isopenten 80.0 0.86 2.9E-05 37.2 2.3 17 50-66 6-22 (323)
318 2pez_A Bifunctional 3'-phospho 79.9 0.93 3.2E-05 33.0 2.3 19 48-66 4-22 (179)
319 3c8u_A Fructokinase; YP_612366 79.9 0.81 2.8E-05 34.4 2.0 18 48-65 21-38 (208)
320 1e6c_A Shikimate kinase; phosp 79.9 0.94 3.2E-05 32.6 2.3 17 50-66 3-19 (173)
321 2ce7_A Cell division protein F 79.7 0.9 3.1E-05 39.2 2.4 17 50-66 50-66 (476)
322 1ye8_A Protein THEP1, hypothet 79.5 1 3.5E-05 33.2 2.4 16 51-66 2-17 (178)
323 2cdn_A Adenylate kinase; phosp 79.5 1.2 3.9E-05 33.2 2.8 18 49-66 20-37 (201)
324 2yvu_A Probable adenylyl-sulfa 79.5 1 3.5E-05 33.0 2.5 20 47-66 11-30 (186)
325 3d3q_A TRNA delta(2)-isopenten 79.4 0.94 3.2E-05 37.3 2.4 17 50-66 8-24 (340)
326 1aky_A Adenylate kinase; ATP:A 79.2 1.1 3.9E-05 33.8 2.7 18 49-66 4-21 (220)
327 1cke_A CK, MSSA, protein (cyti 79.0 1.1 3.7E-05 33.9 2.5 17 50-66 6-22 (227)
328 1nks_A Adenylate kinase; therm 79.0 0.84 2.9E-05 33.4 1.8 16 51-66 3-18 (194)
329 2v9p_A Replication protein E1; 79.0 1.6 5.6E-05 35.2 3.6 21 45-65 122-142 (305)
330 3euj_A Chromosome partition pr 78.9 2.3 7.9E-05 36.7 4.8 40 156-204 412-451 (483)
331 2bwj_A Adenylate kinase 5; pho 78.9 0.99 3.4E-05 33.2 2.2 18 49-66 12-29 (199)
332 1cr0_A DNA primase/helicase; R 78.8 1.7 5.9E-05 34.5 3.8 25 45-69 31-55 (296)
333 3asz_A Uridine kinase; cytidin 78.8 0.94 3.2E-05 33.9 2.1 19 48-66 5-23 (211)
334 3f9v_A Minichromosome maintena 78.7 0.75 2.6E-05 40.9 1.7 15 51-65 329-343 (595)
335 2vli_A Antibiotic resistance p 78.7 0.95 3.2E-05 32.9 2.0 18 49-66 5-22 (183)
336 2wwf_A Thymidilate kinase, put 78.7 1.1 3.7E-05 33.5 2.4 19 48-66 9-27 (212)
337 3tif_A Uncharacterized ABC tra 78.5 1.2 4.1E-05 34.5 2.6 31 156-189 161-191 (235)
338 2yjt_D ATP-dependent RNA helic 79.8 0.43 1.5E-05 34.8 0.0 76 81-168 30-108 (170)
339 3m6a_A ATP-dependent protease 78.2 1.1 3.9E-05 39.2 2.7 19 48-66 107-125 (543)
340 1nn5_A Similar to deoxythymidy 78.0 1.2 4E-05 33.3 2.4 19 48-66 8-26 (215)
341 1zd8_A GTP:AMP phosphotransfer 78.0 1.1 3.8E-05 34.1 2.3 18 49-66 7-24 (227)
342 3tbk_A RIG-I helicase domain; 77.7 12 0.0004 32.0 9.1 80 81-168 389-480 (555)
343 1qf9_A UMP/CMP kinase, protein 77.6 1 3.4E-05 32.9 1.9 17 50-66 7-23 (194)
344 3eph_A TRNA isopentenyltransfe 77.6 1 3.4E-05 38.0 2.0 16 51-66 4-19 (409)
345 3lda_A DNA repair protein RAD5 77.5 2.2 7.4E-05 35.9 4.1 42 48-89 177-220 (400)
346 2p5t_B PEZT; postsegregational 77.3 0.93 3.2E-05 35.3 1.7 19 48-66 31-49 (253)
347 3pxi_A Negative regulator of g 77.2 1.1 3.9E-05 40.7 2.5 20 48-67 200-219 (758)
348 2pt5_A Shikimate kinase, SK; a 77.2 1.2 4.3E-05 31.8 2.3 16 51-66 2-17 (168)
349 2cbz_A Multidrug resistance-as 77.1 1.4 4.7E-05 34.1 2.6 22 44-65 26-47 (237)
350 2v6i_A RNA helicase; membrane, 77.1 3.2 0.00011 35.0 5.2 68 81-162 171-238 (431)
351 1zak_A Adenylate kinase; ATP:A 77.1 1.2 4.2E-05 33.7 2.3 18 49-66 5-22 (222)
352 2vhj_A Ntpase P4, P4; non- hyd 76.9 1.8 6E-05 35.5 3.2 20 49-68 123-142 (331)
353 1m7g_A Adenylylsulfate kinase; 76.7 1.4 4.8E-05 33.1 2.5 21 46-66 22-42 (211)
354 3nwj_A ATSK2; P loop, shikimat 76.6 1.4 4.8E-05 34.5 2.6 18 49-66 48-65 (250)
355 1ukz_A Uridylate kinase; trans 76.6 1.2 4.3E-05 33.0 2.2 17 50-66 16-32 (203)
356 3a4m_A L-seryl-tRNA(SEC) kinas 76.3 1.2 4.2E-05 34.8 2.2 17 50-66 5-21 (260)
357 3p32_A Probable GTPase RV1496/ 76.2 23 0.00079 28.8 10.0 18 50-67 80-97 (355)
358 3i32_A Heat resistant RNA depe 76.1 11 0.00036 30.2 7.7 75 81-167 28-105 (300)
359 2r2a_A Uncharacterized protein 76.1 1.5 5.3E-05 33.0 2.6 22 51-72 7-28 (199)
360 3tlx_A Adenylate kinase 2; str 75.9 1.4 4.7E-05 34.1 2.3 18 49-66 29-46 (243)
361 1ak2_A Adenylate kinase isoenz 75.9 1.6 5.5E-05 33.4 2.7 19 48-66 15-33 (233)
362 3qf7_A RAD50; ABC-ATPase, ATPa 75.8 1.1 3.7E-05 37.1 1.8 39 157-198 302-340 (365)
363 2z0h_A DTMP kinase, thymidylat 75.7 1.4 4.7E-05 32.4 2.2 16 52-67 3-18 (197)
364 2bbw_A Adenylate kinase 4, AK4 75.6 1.5 5.3E-05 33.7 2.6 18 49-66 27-44 (246)
365 2pbr_A DTMP kinase, thymidylat 75.6 1.4 4.6E-05 32.3 2.2 16 51-66 2-17 (195)
366 3umf_A Adenylate kinase; rossm 75.6 1.4 4.6E-05 33.8 2.2 19 48-66 28-46 (217)
367 3sr0_A Adenylate kinase; phosp 75.5 1.3 4.4E-05 33.6 2.0 16 51-66 2-17 (206)
368 1e4v_A Adenylate kinase; trans 75.5 1.3 4.4E-05 33.3 2.0 16 51-66 2-17 (214)
369 2i3b_A HCR-ntpase, human cance 75.4 2.1 7.3E-05 31.8 3.2 43 156-203 103-145 (189)
370 2if2_A Dephospho-COA kinase; a 75.4 1.4 4.6E-05 32.8 2.1 16 51-66 3-18 (204)
371 1jjv_A Dephospho-COA kinase; P 75.3 1.4 4.7E-05 32.8 2.2 16 51-66 4-19 (206)
372 1ypw_A Transitional endoplasmi 75.3 1.4 4.8E-05 40.6 2.5 20 47-66 236-255 (806)
373 2jaq_A Deoxyguanosine kinase; 75.2 1.4 4.8E-05 32.5 2.1 16 51-66 2-17 (205)
374 1zu4_A FTSY; GTPase, signal re 75.2 3.3 0.00011 33.6 4.5 20 48-67 104-123 (320)
375 4e22_A Cytidylate kinase; P-lo 75.0 1.8 6E-05 33.7 2.8 19 48-66 26-44 (252)
376 1pzn_A RAD51, DNA repair and r 75.0 2.4 8.1E-05 34.9 3.6 23 47-69 129-151 (349)
377 3eiq_A Eukaryotic initiation f 74.9 3 0.0001 34.3 4.3 75 81-167 280-357 (414)
378 1f2t_A RAD50 ABC-ATPase; DNA d 74.8 1.5 5.2E-05 31.2 2.2 16 50-65 24-39 (149)
379 2ghi_A Transport protein; mult 74.6 1.7 5.9E-05 34.1 2.6 42 156-202 171-212 (260)
380 2eyq_A TRCF, transcription-rep 74.5 7.9 0.00027 37.2 7.5 80 81-170 812-894 (1151)
381 4akg_A Glutathione S-transfera 74.5 1.4 4.9E-05 45.8 2.6 19 48-66 1266-1284(2695)
382 3bs4_A Uncharacterized protein 74.4 5.1 0.00017 31.5 5.3 53 47-104 19-71 (260)
383 1htw_A HI0065; nucleotide-bind 74.2 1.9 6.5E-05 31.1 2.6 19 47-65 31-49 (158)
384 2dhr_A FTSH; AAA+ protein, hex 74.1 1.6 5.5E-05 37.9 2.4 17 50-66 65-81 (499)
385 3kta_A Chromosome segregation 74.0 1.4 4.8E-05 32.0 1.9 17 50-66 27-43 (182)
386 1mv5_A LMRA, multidrug resista 73.8 1.6 5.5E-05 33.8 2.2 22 44-65 23-44 (243)
387 3be4_A Adenylate kinase; malar 73.7 1.7 5.7E-05 32.9 2.3 18 49-66 5-22 (217)
388 1sgw_A Putative ABC transporte 73.7 1.6 5.4E-05 33.3 2.1 48 156-207 149-196 (214)
389 2jlq_A Serine protease subunit 73.6 13 0.00044 31.5 8.0 68 82-163 189-256 (451)
390 2ff7_A Alpha-hemolysin translo 73.4 1.7 5.8E-05 33.9 2.3 42 156-202 161-202 (247)
391 2xb4_A Adenylate kinase; ATP-b 73.2 1.7 5.7E-05 33.1 2.1 16 51-66 2-17 (223)
392 1r6b_X CLPA protein; AAA+, N-t 73.2 1.7 6E-05 39.5 2.6 20 48-67 206-225 (758)
393 3nh6_A ATP-binding cassette SU 73.1 1.8 6.3E-05 34.9 2.5 41 156-201 206-246 (306)
394 3tqc_A Pantothenate kinase; bi 73.1 1.8 6E-05 35.3 2.4 16 51-66 94-109 (321)
395 1b0u_A Histidine permease; ABC 72.8 2 6.9E-05 33.7 2.6 31 156-189 169-199 (262)
396 1svm_A Large T antigen; AAA+ f 72.7 2.2 7.6E-05 35.5 2.9 21 46-66 166-186 (377)
397 2pze_A Cystic fibrosis transme 72.7 2.1 7.3E-05 32.8 2.7 22 44-65 29-50 (229)
398 2yz2_A Putative ABC transporte 72.4 2.1 7.2E-05 33.7 2.6 31 156-189 154-184 (266)
399 3gfo_A Cobalt import ATP-bindi 72.3 2.2 7.4E-05 33.9 2.7 31 156-189 159-189 (275)
400 2zu0_C Probable ATP-dependent 72.3 2.1 7.2E-05 33.7 2.6 41 157-201 181-221 (267)
401 2ixe_A Antigen peptide transpo 72.3 2.1 7.3E-05 33.8 2.6 42 156-200 172-213 (271)
402 1vpl_A ABC transporter, ATP-bi 72.2 2.1 7.3E-05 33.5 2.6 43 156-202 162-204 (256)
403 4a2p_A RIG-I, retinoic acid in 72.1 8.3 0.00028 33.0 6.6 100 59-168 370-481 (556)
404 1wp9_A ATP-dependent RNA helic 72.0 15 0.00053 30.3 8.1 76 81-168 361-447 (494)
405 3tqf_A HPR(Ser) kinase; transf 71.9 2.5 8.6E-05 31.3 2.7 22 46-67 13-34 (181)
406 2pcj_A ABC transporter, lipopr 71.8 2 6.9E-05 32.8 2.3 41 156-200 156-196 (224)
407 1g6h_A High-affinity branched- 71.7 2.3 7.8E-05 33.3 2.7 48 156-207 169-216 (257)
408 1ji0_A ABC transporter; ATP bi 71.6 2.3 8E-05 32.8 2.7 52 156-211 155-206 (240)
409 2jeo_A Uridine-cytidine kinase 71.5 2.1 7.2E-05 33.0 2.4 20 47-66 23-42 (245)
410 1rz3_A Hypothetical protein rb 71.5 1.8 6.1E-05 32.3 1.9 19 48-66 21-39 (201)
411 1ltq_A Polynucleotide kinase; 71.5 1.9 6.4E-05 34.2 2.2 17 50-66 3-19 (301)
412 1rj9_A FTSY, signal recognitio 71.4 3 0.0001 33.6 3.3 19 48-66 101-119 (304)
413 1vht_A Dephospho-COA kinase; s 71.4 2.1 7.1E-05 32.2 2.3 17 50-66 5-21 (218)
414 2olj_A Amino acid ABC transpor 71.3 2.3 7.9E-05 33.5 2.6 51 156-210 175-225 (263)
415 3cmw_A Protein RECA, recombina 71.3 3.8 0.00013 40.9 4.5 41 47-91 32-72 (1706)
416 3b85_A Phosphate starvation-in 71.2 2.8 9.4E-05 31.7 2.9 20 47-66 20-39 (208)
417 4g1u_C Hemin import ATP-bindin 71.1 2.4 8.1E-05 33.5 2.6 42 158-202 165-206 (266)
418 2z0m_A 337AA long hypothetical 71.0 6.1 0.00021 31.3 5.2 73 80-168 219-294 (337)
419 3b9q_A Chloroplast SRP recepto 70.7 3 0.0001 33.5 3.2 21 47-67 98-118 (302)
420 1uf9_A TT1252 protein; P-loop, 70.5 1.9 6.4E-05 31.8 1.8 17 50-66 9-25 (203)
421 2d2e_A SUFC protein; ABC-ATPas 70.5 2.5 8.7E-05 32.9 2.7 42 157-202 160-201 (250)
422 2oca_A DAR protein, ATP-depend 70.3 20 0.00069 30.4 8.6 92 83-189 349-443 (510)
423 2qi9_C Vitamin B12 import ATP- 70.2 2.6 8.8E-05 32.9 2.7 38 161-202 154-191 (249)
424 3t0q_A AGR253WP; kinesin, alph 70.1 2.6 9E-05 34.7 2.8 22 45-66 80-103 (349)
425 1r6b_X CLPA protein; AAA+, N-t 70.0 2.1 7E-05 39.0 2.3 17 51-67 490-506 (758)
426 2nq2_C Hypothetical ABC transp 69.9 2.6 9E-05 32.9 2.7 51 156-209 144-194 (253)
427 1nij_A Hypothetical protein YJ 69.7 3.3 0.00011 33.4 3.3 16 51-66 6-21 (318)
428 4eaq_A DTMP kinase, thymidylat 69.7 2.3 7.8E-05 32.6 2.2 19 48-66 25-43 (229)
429 3auy_A DNA double-strand break 69.5 1.9 6.6E-05 35.6 1.9 15 52-66 28-42 (371)
430 3v9p_A DTMP kinase, thymidylat 69.4 2.1 7.4E-05 32.9 2.0 22 45-66 21-42 (227)
431 2f1r_A Molybdopterin-guanine d 68.9 2.4 8.3E-05 31.0 2.1 16 51-66 4-19 (171)
432 4a2q_A RIG-I, retinoic acid in 68.6 12 0.00041 34.1 7.2 100 59-168 611-722 (797)
433 2z83_A Helicase/nucleoside tri 68.6 8.1 0.00028 32.8 5.7 70 81-164 190-259 (459)
434 3oiy_A Reverse gyrase helicase 68.5 7.2 0.00025 32.3 5.2 72 82-168 253-330 (414)
435 4a2w_A RIG-I, retinoic acid in 68.5 21 0.00072 33.4 8.8 99 59-167 611-721 (936)
436 3aez_A Pantothenate kinase; tr 68.5 2.5 8.6E-05 34.2 2.3 20 47-66 88-107 (312)
437 2grj_A Dephospho-COA kinase; T 68.1 2.6 8.9E-05 31.4 2.2 16 51-66 14-29 (192)
438 1uj2_A Uridine-cytidine kinase 68.0 2.5 8.7E-05 32.7 2.2 16 51-66 24-39 (252)
439 2ihy_A ABC transporter, ATP-bi 68.0 3 0.0001 33.1 2.7 22 44-65 42-63 (279)
440 3kta_B Chromosome segregation 67.8 5.4 0.00019 29.2 3.8 39 158-200 86-124 (173)
441 1tf7_A KAIC; homohexamer, hexa 67.8 5.4 0.00018 34.6 4.4 49 47-100 279-327 (525)
442 1gtv_A TMK, thymidylate kinase 67.7 1.3 4.4E-05 33.1 0.4 16 51-66 2-17 (214)
443 1goj_A Kinesin, kinesin heavy 67.7 2.9 0.0001 34.5 2.6 21 46-66 76-98 (355)
444 3ake_A Cytidylate kinase; CMP 67.6 2.7 9.2E-05 31.1 2.2 16 51-66 4-19 (208)
445 2ykg_A Probable ATP-dependent 67.5 51 0.0017 29.2 10.9 92 81-184 398-501 (696)
446 2bbs_A Cystic fibrosis transme 67.4 2.8 9.5E-05 33.5 2.3 22 44-65 59-80 (290)
447 3lre_A Kinesin-like protein KI 67.2 3 0.0001 34.4 2.5 21 46-66 101-123 (355)
448 4gl2_A Interferon-induced heli 67.2 2.3 7.8E-05 38.1 2.0 106 81-202 400-518 (699)
449 1q3t_A Cytidylate kinase; nucl 67.1 3.5 0.00012 31.5 2.8 20 48-67 15-34 (236)
450 1odf_A YGR205W, hypothetical 3 67.0 2.7 9.1E-05 33.6 2.2 17 50-66 32-48 (290)
451 3qks_A DNA double-strand break 66.9 2.8 9.6E-05 31.4 2.2 18 49-66 23-40 (203)
452 2og2_A Putative signal recogni 66.9 3.7 0.00013 33.9 3.1 21 47-67 155-175 (359)
453 3bfn_A Kinesin-like protein KI 66.5 2.8 9.5E-05 35.1 2.2 21 46-66 94-116 (388)
454 1jr3_D DNA polymerase III, del 66.4 13 0.00045 29.9 6.3 43 156-203 74-117 (343)
455 1j8m_F SRP54, signal recogniti 66.4 5.7 0.00019 31.8 4.0 20 49-68 98-117 (297)
456 2v3c_C SRP54, signal recogniti 66.3 3.7 0.00013 34.8 3.0 19 50-68 100-118 (432)
457 3r20_A Cytidylate kinase; stru 66.2 2.9 0.0001 32.3 2.2 17 50-66 10-26 (233)
458 2vp4_A Deoxynucleoside kinase; 66.1 3.1 0.00011 31.7 2.3 19 47-65 18-36 (230)
459 3vkg_A Dynein heavy chain, cyt 66.0 6.9 0.00024 41.6 5.3 24 45-68 902-925 (3245)
460 2pjz_A Hypothetical protein ST 66.0 3.4 0.00012 32.5 2.5 47 156-209 144-190 (263)
461 3vkg_A Dynein heavy chain, cyt 65.8 2.5 8.7E-05 44.7 2.2 19 47-65 1302-1320(3245)
462 2f6r_A COA synthase, bifunctio 65.3 2.7 9.1E-05 33.3 1.8 18 50-67 76-93 (281)
463 1xjc_A MOBB protein homolog; s 65.3 3.5 0.00012 30.2 2.3 23 51-74 6-28 (169)
464 1np6_A Molybdopterin-guanine d 65.0 3.2 0.00011 30.4 2.1 16 50-65 7-22 (174)
465 4akg_A Glutathione S-transfera 64.6 4 0.00014 42.6 3.3 22 47-68 921-942 (2695)
466 2h92_A Cytidylate kinase; ross 64.5 3.7 0.00013 30.7 2.5 17 50-66 4-20 (219)
467 1pui_A ENGB, probable GTP-bind 64.3 3.5 0.00012 30.4 2.2 21 45-65 22-42 (210)
468 1tvm_A PTS system, galactitol- 64.0 27 0.00093 23.3 6.6 57 81-141 21-78 (113)
469 3d31_A Sulfate/molybdate ABC t 63.7 3.7 0.00013 33.8 2.5 31 156-189 143-173 (348)
470 1sq5_A Pantothenate kinase; P- 63.6 3.2 0.00011 33.3 2.0 19 48-66 79-97 (308)
471 1ry6_A Internal kinesin; kines 63.3 3.6 0.00012 34.0 2.3 20 48-67 82-103 (360)
472 2qen_A Walker-type ATPase; unk 63.2 4 0.00014 32.6 2.6 39 160-200 130-171 (350)
473 3dc4_A Kinesin-like protein NO 63.0 3.4 0.00012 34.0 2.1 20 47-66 91-112 (344)
474 1z47_A CYSA, putative ABC-tran 63.0 4.7 0.00016 33.2 3.0 22 44-65 36-57 (355)
475 4edh_A DTMP kinase, thymidylat 62.9 4 0.00014 30.9 2.4 20 47-66 4-23 (213)
476 3fvq_A Fe(3+) IONS import ATP- 62.9 3.7 0.00013 33.9 2.3 22 44-65 25-46 (359)
477 2yyz_A Sugar ABC transporter, 62.8 4.2 0.00014 33.6 2.6 22 44-65 24-45 (359)
478 3zvl_A Bifunctional polynucleo 62.8 3.5 0.00012 34.7 2.2 17 50-66 259-275 (416)
479 1bg2_A Kinesin; motor protein, 62.6 3.5 0.00012 33.6 2.0 20 47-66 74-95 (325)
480 2it1_A 362AA long hypothetical 62.4 4.3 0.00015 33.6 2.6 22 44-65 24-45 (362)
481 3end_A Light-independent proto 62.2 9.2 0.00032 30.3 4.6 23 49-71 41-63 (307)
482 1f9v_A Kinesin-like protein KA 62.0 4 0.00014 33.6 2.3 21 46-66 80-102 (347)
483 3ice_A Transcription terminati 61.7 6.2 0.00021 33.2 3.4 23 45-67 170-192 (422)
484 1tf7_A KAIC; homohexamer, hexa 61.6 5.3 0.00018 34.6 3.2 22 47-68 37-58 (525)
485 3qkt_A DNA double-strand break 61.6 3.8 0.00013 33.3 2.2 15 52-66 26-40 (339)
486 3sop_A Neuronal-specific septi 61.6 3.7 0.00013 32.4 2.0 15 51-65 4-18 (270)
487 1ypw_A Transitional endoplasmi 61.6 2.3 7.9E-05 39.2 0.9 19 48-66 510-528 (806)
488 4tmk_A Protein (thymidylate ki 61.6 3.9 0.00013 31.0 2.1 19 48-66 2-20 (213)
489 2onk_A Molybdate/tungstate ABC 61.6 4.5 0.00015 31.3 2.5 31 156-189 142-172 (240)
490 3rlf_A Maltose/maltodextrin im 61.5 4.5 0.00015 33.7 2.6 22 44-65 24-45 (381)
491 2h58_A Kinesin-like protein KI 61.4 3.8 0.00013 33.5 2.1 21 46-66 76-98 (330)
492 3nwn_A Kinesin-like protein KI 61.3 3.3 0.00011 34.2 1.8 21 46-66 100-122 (359)
493 1v43_A Sugar-binding transport 60.9 4.7 0.00016 33.5 2.6 31 156-189 157-187 (372)
494 3o8b_A HCV NS3 protease/helica 60.7 17 0.00057 32.7 6.2 66 81-163 396-461 (666)
495 1oxx_K GLCV, glucose, ABC tran 60.3 3.8 0.00013 33.8 1.9 31 156-189 156-186 (353)
496 4etp_A Kinesin-like protein KA 60.3 4.4 0.00015 34.1 2.4 20 47-66 137-158 (403)
497 4a82_A Cystic fibrosis transme 60.2 4.7 0.00016 35.5 2.6 42 156-202 493-534 (578)
498 2y65_A Kinesin, kinesin heavy 60.2 4 0.00014 33.8 2.0 20 47-66 81-102 (365)
499 2vvg_A Kinesin-2; motor protei 60.1 4 0.00014 33.6 2.0 20 47-66 86-107 (350)
500 1a7j_A Phosphoribulokinase; tr 60.0 2.6 9E-05 33.6 0.9 16 51-66 7-22 (290)
No 1
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=257.77 Aligned_cols=208 Identities=50% Similarity=0.864 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+.+.+++.+.+.+|..+++.|..+. .+.+|+++++.+|||+|||++|++|++..+......+++++|++|+++|+.|+
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHH
Confidence 46678999999999999999997775 67789999999999999999999999999876666778999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+.++++....+..+....++.............+++|+|+||+++.+++........+.+++++|+||||++.+++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 194 (245)
T 3dkp_A 115 HRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTG 194 (245)
T ss_dssp HHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--C
T ss_pred HHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccccc
Confidence 99999999888888887777765555555566778999999999999999875556789999999999999999865557
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
+...+..++..+.+++.|++++|||+|+++.++++.++++|+.+.+++|
T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 195 FRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999999998887778999999999999999999999999999999875
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-37 Score=249.38 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~~ 92 (226)
+++-+.+++.+.+.+|.+++++|..+. .+.+|+|+++.+|||+|||++|++|++..+... ...+++++|++|+++
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 34 ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHH
Confidence 346778999999999999999997775 677889999999999999999999999887542 234678999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
|+.|+.+.++.+....+.++....++....... .....+++|+|+||+++.+++.. ....+.+++++|+||||++.+
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI-RDLERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH-HHHHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeCHHHHhh
Confidence 999999999999998888888877765443322 22335689999999999999987 566789999999999999999
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
. ++...+..+++.+ ++..|++++|||+|+++.++++.++++|+.|++++
T Consensus 191 ~---~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 191 M---GFEPQIRKIVDQI-RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp T---TCHHHHHHHHTTS-CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred h---CcHHHHHHHHHhC-CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 8 6899999999888 67899999999999999999999999999999875
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=9.4e-37 Score=251.95 Aligned_cols=199 Identities=20% Similarity=0.197 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
+.+-+.+++.+.+++|..++++|..+. .++.+ +|+++++|||||||++|++|+++.+.. ...+++++|++||++||
T Consensus 97 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~lil~PtreLa 175 (300)
T 3fmo_B 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELA 175 (300)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-cCCCceEEEEcCcHHHH
Confidence 456789999999999999999997775 55665 999999999999999999999999864 34567999999999999
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 95 KQTYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 95 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.|+++.++.+.... +..+....++... ......+++|+|+||+++.+++.+. +.+++++++++|+||+|++++.
T Consensus 176 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~ 250 (300)
T 3fmo_B 176 LQTGKVIEQMGKFYPELKLAYAVRGNKL----ERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIAT 250 (300)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEESTTCCC----CTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHS
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccH----hhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhc
Confidence 99999999998765 4666666665332 2223567899999999999998653 5677899999999999999983
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
. ++...+..+.+.+ ++.+|+++||||+|+++.++++.++++|+.|.+++
T Consensus 251 ~--~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 251 Q--GHQDQSIRIQRML-PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp T--THHHHHHHHHTTS-CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred c--CcHHHHHHHHHhC-CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 2 6888899998888 67899999999999999999999999999999875
No 4
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.6e-36 Score=241.23 Aligned_cols=200 Identities=23% Similarity=0.312 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-+.+++.+.+.+|..+++.|..+. .+.+++|+++.+|||+|||++|+++++..+.. ...+.+++|++|+++|+.|+
T Consensus 36 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-EFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEECcHHHHHHH
Confidence 45678899999999999999997774 67788999999999999999999999998863 23456999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc
Q psy12977 98 YNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~ 177 (226)
.+.++.+....+..+....++..............++|+|+||+++.+.+.+ +...+.+++++|+||||++.+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~---~ 189 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSR---G 189 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHT---T
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhcc---C
Confidence 9999999888788877777665443333333344589999999999999887 5677889999999999999887 6
Q ss_pred hHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 178 FRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 178 ~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+...+..+++.+ ++..|++++|||+|+++.++++.++++|+.|.+++
T Consensus 190 ~~~~l~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 190 FKDQIYEIFQKL-NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp CHHHHHHHHHHS-CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 888888898888 57899999999999999999999999999998875
No 5
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.4e-36 Score=236.49 Aligned_cols=199 Identities=23% Similarity=0.318 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
++-+.+++.+++.+|.++++.|..+. .+.+++++++.+|||+|||++|++|++..+.. ...+.+++|++|+++|+.|+
T Consensus 10 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 10 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-CcCCceEEEEcCcHHHHHHH
Confidence 45678999999999999999997775 66788999999999999999999999998864 33467999999999999999
Q ss_pred HHHHHHHhhcC----CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 98 YNETVRLSEGL----GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 98 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.+.++++.... +..+....++...... ......+++|+|+||+++.+.+.. +...+.+++++|+||||++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKA-LEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLDM 165 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHT-TCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHHT
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCHHHH-HHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhhh
Confidence 99999998776 5666666666544333 334456889999999999999887 5677889999999999999987
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..+++.+ ++..|++++|||+|+++.+++++++++|+.+.+..
T Consensus 166 ---~~~~~l~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 166 ---GFITDVDQIAARM-PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp ---TCHHHHHHHHHTS-CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred ---ChHHHHHHHHHhC-CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 6888999999888 56889999999999999999999999999998753
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=239.07 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC-----CCCCceEEEEcccHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP-----KNLGFRAVIVCPTRE 92 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~~iil~Pt~~ 92 (226)
.+.+.+++.+.+.+|.+++++|..+. .+.+|+|+++.+|||+|||++|++|++..+... ...+++++|++|+++
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~ 105 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRE 105 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHH
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHH
Confidence 46689999999999999999997775 677899999999999999999999999877532 235678999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
|+.|+.+.++.+. ..+..+....++....... .....+++|+|+||+++.+++.. ....+.+++++|+||||++.+
T Consensus 106 L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 106 LALHVEAECSKYS-YKGLKSICIYGGRNRNGQI-EDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHHHHC-CTTCCEEEECC------CH-HHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHHHhc-ccCceEEEEECCCChHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhc
Confidence 9999999999986 3366666666554322211 12345689999999999998877 667789999999999999998
Q ss_pred cCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 173 AGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
. ++...+..+++.+ +++.|++++|||+|+++.++++.++++|+.|.|
T Consensus 182 ~---~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 182 M---EFEPQIRKILLDV-RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp T---TCHHHHHHHHHHS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred c---chHHHHHHHHHhC-CcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 8 6889999999888 678999999999999999999999999999865
No 7
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-35 Score=231.61 Aligned_cols=196 Identities=25% Similarity=0.372 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-+.+++.+.+++|.++++.|..+. .+.+++++++.+|||+|||++|++|++..+.. ...+++++|++|+++|+.|+
T Consensus 9 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcHHHHHHH
Confidence 35678999999999999999997775 66788999999999999999999999988753 33457899999999999999
Q ss_pred HHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 98 YNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
.+.++++.+.. +..+....++....... .....+++|+|+||+++.+.+.+ +...+.+++++|+||||++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~--- 161 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRDDI-MRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQ--- 161 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHH-HHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTST---
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHHHH-HhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhh---
Confidence 99999998876 67777766665433222 22346789999999999998886 5667889999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
++...+..+...+ ++..|++++|||+|+++.++++.++++|+.|+
T Consensus 162 ~~~~~l~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 206 (206)
T 1vec_A 162 DFVQIMEDIILTL-PKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206 (206)
T ss_dssp TTHHHHHHHHHHS-CTTCEEEEEESCCCHHHHHHHHHHCSSCEEEC
T ss_pred CcHHHHHHHHHhC-CccceEEEEEeeCCHHHHHHHHHHcCCCeEeC
Confidence 6888999999888 56899999999999999999999999999873
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=7.7e-36 Score=237.45 Aligned_cols=198 Identities=24% Similarity=0.326 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-+.+++.+++.+|.++++.|..+. .+.+|+|+++.+|||+|||++|++|++..+.. ...+++++|++|+++|+.|+
T Consensus 30 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL-ENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEeCCHHHHHHH
Confidence 45688999999999999999997775 66788999999999999999999999988763 23467999999999999999
Q ss_pred HHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 98 YNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
.+.++.+.... +.++....++........ ...+++|+|+||+++.+++.. +...+.+++++|+||||++.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-- 182 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQDKT--RLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEG-- 182 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHHHHH--HTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTT--
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHHHHH--hccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCc--
Confidence 99999998765 677777776654333221 224689999999999999876 56778899999999999998873
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
.+...+..+++.+ ++..|++++|||+|+++.+++++++++|++|.++
T Consensus 183 ~~~~~~~~i~~~~-~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 183 SFQEQINWIYSSL-PASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp SSHHHHHHHHHHS-CSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred chHHHHHHHHHhC-CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 3888999999888 5688999999999999999999999999999876
No 9
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.8e-35 Score=233.94 Aligned_cols=200 Identities=22% Similarity=0.286 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+++-+.+++.+.+.+|.++++.|..+. .+.+++++++.+|||+|||++|+++++..+.. ...+++++|++|+++|+.|
T Consensus 19 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q 97 (224)
T 1qde_A 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 97 (224)
T ss_dssp GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEEECCHHHHHH
Confidence 346788999999999999999997775 67788999999999999999999999998864 3346799999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+.++....++........ ...+++|+|+||+++.+.+.+ ....+.+++++|+||||++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~--- 170 (224)
T 1qde_A 98 IQKVVMALAFHMDIKVHACIGGTSFVEDAE--GLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSS--- 170 (224)
T ss_dssp HHHHHHHHTTTSCCCEEEECC------------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHT---
T ss_pred HHHHHHHHhcccCceEEEEeCCcchHHHHh--cCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhh---
Confidence 999999998888888877777654333222 223489999999999998887 5677889999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
++...+..++..+ ++..|++++|||+|+++.+++++++++|+.+.++++
T Consensus 171 ~~~~~l~~i~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 171 GFKEQIYQIFTLL-PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp TCHHHHHHHHHHS-CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhHHHHHHHHHhC-CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 6888888888888 578999999999999999999999999999988753
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.6e-36 Score=237.80 Aligned_cols=201 Identities=25% Similarity=0.396 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC---CCCCceEEEEcccHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP---KNLGFRAVIVCPTRELA 94 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~---~~~~~~~iil~Pt~~L~ 94 (226)
++-+.+++.+++.+|..+++.|..+. .+.+++++++.+|||+|||++|++|++..+... ...+++++|++|+++|+
T Consensus 31 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~ 110 (236)
T 2pl3_A 31 PLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH
Confidence 45678899999999999999997775 777899999999999999999999998876421 23467899999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 95 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
.|+.+.++.+....+..+....++........ ...+++|+|+||+++.+.+... ....+.+++++|+||||++.+.
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~- 186 (236)
T 2pl3_A 111 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE--RINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDM- 186 (236)
T ss_dssp HHHHHHHHHHTTTSSCCEEEECCC--CHHHHH--HHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHT-
T ss_pred HHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH--hCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcC-
Confidence 99999999998887888877777654332211 1257899999999999988763 3466889999999999999988
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
++...+..+++.+ ++..|++++|||+|+++.++++.++.+|+++.+++|
T Consensus 187 --~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 187 --GFADTMNAVIENL-PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp --TTHHHHHHHHHTS-CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred --CcHHHHHHHHHhC-CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 6888999999888 568999999999999999999999999999999875
No 11
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=237.27 Aligned_cols=201 Identities=28% Similarity=0.361 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+++-+.+++.+++++|.++++.|..+. .+.+++++++.+|||+|||++|+++++..+... ..+++++|++|+++|+.|
T Consensus 48 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~~~~~lil~Ptr~L~~q 126 (249)
T 3ber_A 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-PQRLFALVLTPTRELAFQ 126 (249)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-CCCceEEEEeCCHHHHHH
Confidence 345678899999999999999997775 677889999999999999999999999887532 335689999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+.++....++....... .....+++|+|+||+++.+.+... ....+.+++++|+||||++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~--- 201 (249)
T 3ber_A 127 ISEQFEALGSSIGVQSAVIVGGIDSMSQS-LALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNM--- 201 (249)
T ss_dssp HHHHHHHHHGGGTCCEEEECTTSCHHHHH-HHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHT---
T ss_pred HHHHHHHHhccCCeeEEEEECCCChHHHH-HHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhcc---
Confidence 99999999988888888777765432221 223467899999999999988753 3456889999999999999988
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..+++.+ ++..|++++|||+++++.++++.++++|+.|.++.
T Consensus 202 ~~~~~l~~i~~~~-~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~~ 249 (249)
T 3ber_A 202 DFETEVDKILKVI-PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249 (249)
T ss_dssp TCHHHHHHHHHSS-CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECCC
T ss_pred ChHHHHHHHHHhC-CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEecC
Confidence 6888999999888 56899999999999999999999999999998863
No 12
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=233.12 Aligned_cols=200 Identities=24% Similarity=0.321 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+++-+.+++.+.+.+|+++++.|..+. .+.+++++++.+|||+|||++|+++++..+.. ...+++++|++|+++|+.|
T Consensus 19 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q 97 (220)
T 1t6n_A 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQ 97 (220)
T ss_dssp SCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-cCCCEEEEEEeCCHHHHHH
Confidence 346688999999999999999997775 66788999999999999999999999988764 2335689999999999999
Q ss_pred HHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 97 TYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
+.+.++++.+.. +.++....++..............++|+|+||+++.+.+.. ....+.+++++|+||||++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~- 174 (220)
T 1t6n_A 98 ISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQL- 174 (220)
T ss_dssp HHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSH-
T ss_pred HHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhccc-
Confidence 999999998776 67777777665433322222234579999999999999887 56678999999999999998732
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
++...+..+++.+ ++..|++++|||+|+++.+++++++.+|+.|++
T Consensus 175 -~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 175 -DMRRDVQEIFRMT-PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp -HHHHHHHHHHHTS-CSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred -CcHHHHHHHHHhC-CCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 5788888888877 568999999999999999999999999999875
No 13
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-35 Score=237.61 Aligned_cols=201 Identities=29% Similarity=0.404 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC--------CCCceEEEEcc
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK--------NLGFRAVIVCP 89 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~~iil~P 89 (226)
.+-+.+++.+.+.+|.++++.|..+. .+.+++|+++.+|||+|||++|++|++..+.... ..+++++|++|
T Consensus 29 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~P 108 (253)
T 1wrb_A 29 KLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 108 (253)
T ss_dssp SCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEEC
Confidence 34567788889999999999997775 6778899999999999999999999998875332 23469999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc
Q psy12977 90 TRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK 169 (226)
Q Consensus 90 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (226)
+++|+.|+.+.++.+....+..+....++....... .....+++|+|+||+++.+.+.. ....+.+++++|+||||+
T Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 109 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI-REVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADR 185 (253)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH-HHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCEEEEeCHHH
Confidence 999999999999999888788877776665433222 22346789999999999999887 566788999999999999
Q ss_pred ccccCccchHHHHHHHHHhcCCC---CceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 170 LFEAGVRGFRDQLAVIYAACSGP---NLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 170 l~~~~~~~~~~~i~~i~~~~~~~---~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
+.+. ++...+..+++.+..+ ..|++++|||+|+++.++++.++.+|+.+.+++
T Consensus 186 ~~~~---~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 186 MLDM---GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp HHHT---TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHhC---chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 9988 6888999998854222 689999999999999999999999999998864
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.4e-34 Score=226.01 Aligned_cols=197 Identities=26% Similarity=0.350 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~~L~~ 95 (226)
++-+.+++.+++.++.++++.|..+. .+.+++++++.+|||+|||.+|+.+++..+... ...+++++|++|+++|+.
T Consensus 7 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~ 86 (207)
T 2gxq_A 7 PLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELAL 86 (207)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHH
Confidence 35678899999999999999997775 677889999999999999999999999988532 234678999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 96 QTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 96 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
|+.+.++.+... .++....++....... .....+++|+|+||+++.+.+.. +...+.+++++|+||||++.+.
T Consensus 87 q~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~-- 159 (207)
T 2gxq_A 87 QVASELTAVAPH--LKVVAVYGGTGYGKQK-EALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSM-- 159 (207)
T ss_dssp HHHHHHHHHCTT--SCEEEECSSSCSHHHH-HHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHT--
T ss_pred HHHHHHHHHhhc--ceEEEEECCCChHHHH-HHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhcc--
Confidence 999999999765 4555555543321111 12235689999999999999887 6677899999999999999887
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++...+..++..+ ++..|++++|||+|+++.++++.++.+|+.+.++
T Consensus 160 -~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 160 -GFEEEVEALLSAT-PPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp -TCHHHHHHHHHTS-CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred -chHHHHHHHHHhC-CccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 6888899888887 5689999999999999999999999999999875
No 15
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=234.20 Aligned_cols=196 Identities=27% Similarity=0.376 Sum_probs=164.7
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC---CCCCceEEEEcccHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP---KNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~---~~~~~~~iil~Pt~~L~~ 95 (226)
+.+.+++.+++++|..++++|..+. .+..++|+++++|||+|||++|++|++..+... ...+.+++|++|+++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 5678999999999999999997775 667889999999999999999999999877432 224678999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 96 QTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 96 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
|+.+.++++....+..+....++....... .....+++|+|+||+++.+.+... ....+.+++++|+||||++.+.
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~~-- 216 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEA-QKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILDV-- 216 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHH-HHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHHT--
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHH-HHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhhh--
Confidence 999999999988888888777765443332 123345899999999999988763 3466889999999999999998
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC-CCeEE
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK-RRVQI 221 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~p~~i 221 (226)
++...+..+++.+ ++.+|++++|||+|+++.++++.+++ +|+++
T Consensus 217 -~~~~~l~~i~~~~-~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~~v 261 (262)
T 3ly5_A 217 -GFEEELKQIIKLL-PTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261 (262)
T ss_dssp -TCHHHHHHHHHHS-CSSSEEEEECSSCCHHHHHHHHHHCSSCCEEC
T ss_pred -hHHHHHHHHHHhC-CCCCeEEEEEecCCHHHHHHHHHHcCCCCeee
Confidence 6889999999888 57899999999999999999999987 45443
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-34 Score=246.91 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC----CCCCceEEEEcccHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP----KNLGFRAVIVCPTRE 92 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~----~~~~~~~iil~Pt~~ 92 (226)
+.+-+.+++.+++++|.+++|+|.++. .+++|+|+++++|||||||++|++|++..+... ...+++++|++||++
T Consensus 61 ~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 61 ADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 346788999999999999999997775 778899999999999999999999999887432 234679999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccc
Q psy12977 93 LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFE 172 (226)
Q Consensus 93 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~ 172 (226)
|+.|+++.++++....+.++..+.|+....... .....+++|+|+||+++.+++.+ ....+.+++++|+||||++++
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRHQN-ECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHH-HHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHHHH-HHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEccHhhhhc
Confidence 999999999999988888887777765433222 23446799999999999999987 567789999999999999999
Q ss_pred cCccchHHHHHHHHHhcC-CCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 173 AGVRGFRDQLAVIYAACS-GPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 173 ~~~~~~~~~i~~i~~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
. ++...+..++..+. ++..|++++|||+|+++.+++..++.+|+.+.+.
T Consensus 218 ~---gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 267 (434)
T 2db3_A 218 M---GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267 (434)
T ss_dssp T---TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEES
T ss_pred c---CcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEec
Confidence 8 68999999988752 5678999999999999999999999999988765
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.4e-31 Score=229.15 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+.+-+.+++.+++.+|.+++|+|..+. .+.+++++++.+|||+|||++|++|+++.+.. ...+.+++|++|+++|+.|
T Consensus 42 ~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~Pt~~L~~q 120 (410)
T 2j0s_A 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-QVRETQALILAPTRELAVQ 120 (410)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-ccCCceEEEEcCcHHHHHH
Confidence 345688999999999999999997775 67788999999999999999999999988753 3346799999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+..+....++....... .....+++|+|+||+++.+.+.. ....+.+++++|+||+|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~--- 194 (410)
T 2j0s_A 121 IQKGLLALGDYMNVQCHACIGGTNVGEDI-RKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNK--- 194 (410)
T ss_dssp HHHHHHHHTTTTTCCEEEECTTSCHHHHH-HHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTST---
T ss_pred HHHHHHHHhccCCeEEEEEECCCCHHHHH-HHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHHhh---
Confidence 99999999988888888777665433322 12335679999999999999887 5677889999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++...+..+++.+ ++..|++++|||+|+++.+++..++.+|..+.+.
T Consensus 195 ~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (410)
T 2j0s_A 195 GFKEQIYDVYRYL-PPATQVVLISATLPHEILEMTNKFMTDPIRILVK 241 (410)
T ss_dssp TTHHHHHHHHTTS-CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred hhHHHHHHHHHhC-ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec
Confidence 6888888888877 6789999999999999999999999999988764
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=3.4e-31 Score=226.90 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC-----------------CCC
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP-----------------KNL 80 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~-----------------~~~ 80 (226)
.+-+.+++.+...+|.+++|+|..+. .+..++|+++.+|||+|||++|++|+++.+... ...
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 45678999999999999999997775 677899999999999999999999998876422 122
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+++++|++|+++|+.|+.+.++.+....+.++....++....... .....+++|+|+||+++.+.+.. ....+.+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI-RDLERGCHLLVATPGRLVDMMER--GKIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH-HHHTTCCSEEEECHHHHHHHHHT--TSBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH-HHhhCCCCEEEEChHHHHHHHHc--CCcChhhCc
Confidence 468999999999999999999999988888888777765433322 22346789999999999999887 567788999
Q ss_pred EEEEcccccccccCccchHHHHHHHHHhcC---CCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 161 WLIVDESDKLFEAGVRGFRDQLAVIYAACS---GPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 161 ~lViDE~h~l~~~~~~~~~~~i~~i~~~~~---~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++|+||+|.+.+. ++...+..+..... ....|++++|||+|+++..++..++.+|..+.+.
T Consensus 178 ~iViDEah~~~~~---~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 178 YLVLDEADRMLDM---GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp EEEESSHHHHHHT---TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEEEChhHhhcc---CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999988 68888888887532 1268999999999999999999999999887764
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=226.71 Aligned_cols=201 Identities=22% Similarity=0.309 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+++-+..++.+.+.+|..+++.|..+. .+..++++++.+|||+|||++|++++++.+.. ...+.+++|++|+++|+.|
T Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q 123 (414)
T 3eiq_A 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVLAPTRELAQQ 123 (414)
T ss_dssp GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-cCCceeEEEEeChHHHHHH
Confidence 345678899999999999999997774 77789999999999999999999999998864 3346689999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+..+....++.............+++|+|+||+++.+.+.. ....+.+++++|+||+|++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~--- 198 (414)
T 3eiq_A 124 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSR--- 198 (414)
T ss_dssp HHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHHT---
T ss_pred HHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhcc---
Confidence 99999999988888888777765554444333447789999999999999887 6677888999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..++..+ ++..|++++|||+++++.+++..++.+|..+.+..
T Consensus 199 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 246 (414)
T 3eiq_A 199 GFKDQIYDIFQKL-NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 246 (414)
T ss_dssp TTHHHHHHHHTTS-CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC
T ss_pred CcHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC
Confidence 6888888898888 67899999999999999999999999998887653
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=227.07 Aligned_cols=199 Identities=20% Similarity=0.197 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
+.+.+.+++.+.+++|..++|+|..+. .++.+ +++++.||||||||++|++|++..+.. ...++++||++|+++|+
T Consensus 97 ~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La 175 (479)
T 3fmp_B 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELA 175 (479)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEEECSSHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEEEeChHHHH
Confidence 456789999999999999999997775 55555 899999999999999999999988864 33456899999999999
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 95 KQTYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 95 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.|+.+.++++.... +..+....++... .......++|+|+||+++.+++.+. ..+++.+++++|+||+|.+.+.
T Consensus 176 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 176 LQTGKVIEQMGKFYPELKLAYAVRGNKL----ERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp HHHHHHHHHHHTTSTTCCEEEESTTCCC----CTTCCCCCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHHTS
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCccc----cccccCCCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHhhc
Confidence 99999999998764 3555555554321 2223456799999999999988653 5677899999999999999874
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
. ++...+..+.+.+ ++.+|++++|||++.++..++..++.+|..+.+.+
T Consensus 251 ~--~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 299 (479)
T 3fmp_B 251 Q--GHQDQSIRIQRML-PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (479)
T ss_dssp T--THHHHHHHHHTTS-CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-
T ss_pred C--CcHHHHHHHHhhC-CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc
Confidence 3 5777888888777 67899999999999999999999999999887654
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.7e-30 Score=220.72 Aligned_cols=201 Identities=23% Similarity=0.311 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+-+.+++.+++.+|.+++|.|..+. .+..++++++.+|||+|||++|+++++..+.. ...+.+++|++|+++|+.|+
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-cCCCeeEEEECCCHHHHHHH
Confidence 45688999999999999999997775 67788999999999999999999999988753 33456899999999999999
Q ss_pred HHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 98 YNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
.+.++++.+.. +.++....++..............++|+|+||+++.+.+.. ....+.+++++|+||||.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~~~~~-- 168 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQL-- 168 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHHTSSH--
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHHhhcc--
Confidence 99999998776 67777777665433322222234579999999999998887 56678899999999999998742
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..++... ++..|++++|||++++....+..++.+|..+.+..
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 216 (391)
T 1xti_A 169 DMRRDVQEIFRMT-PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 216 (391)
T ss_dssp HHHHHHHHHHHTS-CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC
T ss_pred chHHHHHHHHhhC-CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC
Confidence 5777888888777 56899999999999999999999999998887653
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.4e-30 Score=221.19 Aligned_cols=199 Identities=22% Similarity=0.284 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+.+-+.+++.+.+.+|.+++|.|..+. .+..++++++.+|||+|||++|++|++..+.. ...+++++|++|+++|+.|
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q 104 (394)
T 1fuu_A 26 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 104 (394)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-cCCCCCEEEEcCCHHHHHH
Confidence 356788999999999999999997775 66788999999999999999999999988764 3346799999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.+..+....+.++....++......... ..+++|+|+||+++.+.+.. ....+.+++++|+||+|.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~--- 177 (394)
T 1fuu_A 105 IQKVVMALAFHMDIKVHACIGGTSFVEDAEG--LRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSS--- 177 (394)
T ss_dssp HHHHHHHHTTTSCCCEEEECSSCCHHHHHHH--HHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHT---
T ss_pred HHHHHHHHhccCCeeEEEEeCCCchHHHHhh--cCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCC---
Confidence 9999999988888888877776543322111 12578999999999998887 5667889999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..+...+ ++..|++++|||+++.+.++...++.+|..+.+..
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
T 1fuu_A 178 GFKEQIYQIFTLL-PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 225 (394)
T ss_dssp TCHHHHHHHHHHS-CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC
T ss_pred CcHHHHHHHHHhC-CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC
Confidence 5888888888887 67899999999999999999999999999887653
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=5.9e-30 Score=218.58 Aligned_cols=198 Identities=20% Similarity=0.201 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELA 94 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~ 94 (226)
+++-+.+++.+++.+|..++|.|..+. .+..+ +++++.+|||+|||++|++|++..+.. ...+++++|++|+++|+
T Consensus 30 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~ 108 (412)
T 3fht_A 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELA 108 (412)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-cCCCCCEEEECCCHHHH
Confidence 456789999999999999999997775 45555 899999999999999999999988864 34456899999999999
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 95 KQTYNETVRLSEGL-GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 95 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
.|+.+.++++.... +..+....++... .......++|+|+||+++.+.+... ....+.+++++|+||+|++.+.
T Consensus 109 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~~~ 183 (412)
T 3fht_A 109 LQTGKVIEQMGKFYPELKLAYAVRGNKL----ERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIAT 183 (412)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEECTTCCC----CTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHHST
T ss_pred HHHHHHHHHHHhhcccceEEEeecCcch----hhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHhhc
Confidence 99999999998765 4566655554322 2223456899999999999988653 5667889999999999999874
Q ss_pred CccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 174 GVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 174 ~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
. ++...+..+...+ ++..|++++|||+++.+..++..++.+|..+.+.
T Consensus 184 ~--~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 231 (412)
T 3fht_A 184 Q--GHQDQSIRIQRML-PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 231 (412)
T ss_dssp T--TTHHHHHHHHHTS-CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCC
T ss_pred C--CcHHHHHHHHhhC-CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeec
Confidence 3 5777788888777 6789999999999999999999999999888764
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=4.5e-30 Score=218.94 Aligned_cols=199 Identities=27% Similarity=0.373 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 18 ISIIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+.+-+.+++.+.+.+|++++|.|..+. .+.+++++++.+|||+|||++|++|++..+.. ...+.+++|++|+++|+.|
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q 104 (400)
T 1s2m_A 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMVPTRELALQ 104 (400)
T ss_dssp GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-ccCCccEEEEcCCHHHHHH
Confidence 345688999999999999999997775 66788999999999999999999999988763 2345689999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+..+....++....... .....+++|+|+||+++.+.+.. ....+.+++++|+||+|++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~--- 178 (400)
T 1s2m_A 105 TSQVVRTLGKHCGISCMVTTGGTNLRDDI-LRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSR--- 178 (400)
T ss_dssp HHHHHHHHTTTTTCCEEEECSSSCHHHHH-HHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSH---
T ss_pred HHHHHHHHhcccCceEEEEeCCcchHHHH-HHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhh---
Confidence 99999999988888887777665433322 12346789999999999998876 5667889999999999999877
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++...+..+...+ ++..|++++|||+|+.+.+++..++.+|..+.+.
T Consensus 179 ~~~~~~~~i~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 1s2m_A 179 DFKTIIEQILSFL-PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 225 (400)
T ss_dssp HHHHHHHHHHTTS-CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred chHHHHHHHHHhC-CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec
Confidence 5778888888777 5688999999999999999999999998877654
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=7.2e-30 Score=216.58 Aligned_cols=195 Identities=19% Similarity=0.300 Sum_probs=163.9
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK 95 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~ 95 (226)
++-+.+++.+.+.+|.+++|.|..+. .+..+ +++++.+|||+|||++|+.+++..+.. ...+++++|++|+++|+.
T Consensus 11 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-EDASPQAICLAPSRELAR 89 (395)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-CCCCccEEEECCCHHHHH
Confidence 45678999999999999999997775 55555 899999999999999999999988764 334669999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 96 QTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 96 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
|+.+.++++....+.......++.... ....+++|+|+||+++.+.+.. ....+.+++++|+||+|++.+..
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~- 161 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEK-----NKQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQ- 161 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCT-----TSCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHST-
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhh-----hccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCcc-
Confidence 999999999888787777766553322 2235789999999999999877 66778999999999999998742
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++...+..+...+ ++..|++++|||+++.+.++...++.++..+.+.
T Consensus 162 -~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 208 (395)
T 3pey_A 162 -GLGDQCIRVKRFL-PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQ 208 (395)
T ss_dssp -THHHHHHHHHHTS-CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCC
T ss_pred -ccHHHHHHHHHhC-CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcc
Confidence 5777888888777 6789999999999999999999999988877654
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.6e-29 Score=212.42 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-cCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-LSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
++.+.+++.+++.+|.+++|.|..+. .+.++ +++++.+|||+|||++++.+++..+... .+.+++|++|+++|+.|
T Consensus 12 ~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 12 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQ 89 (367)
T ss_dssp SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHH
Confidence 46788999999999999999997775 44555 7999999999999999999998887543 45689999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.++.+....+..+....++........ ...+++|+|+||+++.+.+.. ....+.+++++|+||+|.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~--- 162 (367)
T 1hv8_A 90 VADEIESLKGNKNLKIAKIYGGKAIYPQIK--ALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNM--- 162 (367)
T ss_dssp HHHHHHHHHCSSCCCEEEECTTSCHHHHHH--HHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTT---
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHHh--hcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhh---
Confidence 999999998887888877776654332211 113689999999999999887 5667889999999999999887
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~ 224 (226)
++...+..++..+ ++..+++++|||++++..+++..++.++..+...
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 209 (367)
T 1hv8_A 163 GFIKDVEKILNAC-NKDKRILLFSATMPREILNLAKKYMGDYSFIKAK 209 (367)
T ss_dssp TTHHHHHHHHHTS-CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred chHHHHHHHHHhC-CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec
Confidence 6888888888877 6789999999999999999999999988777653
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=3.8e-29 Score=208.04 Aligned_cols=186 Identities=28% Similarity=0.434 Sum_probs=158.1
Q ss_pred HHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
+.+.+.+++++|.+++|.|..+. .+.+++++++.+|||+|||++|+.+++.. +.+++|++|+++|+.|+.+.
T Consensus 3 ~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 3 EKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASH 75 (337)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHH
Confidence 56788999999999999997775 66788999999999999999999998764 45899999999999999999
Q ss_pred HHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHH
Q psy12977 101 TVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRD 180 (226)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~ 180 (226)
++++....+..+....++........ ...+++|+|+||+++.+.+.. ....+.+++++|+||+|++.+. ++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~---~~~~ 148 (337)
T 2z0m_A 76 IRDIGRYMDTKVAEVYGGMPYKAQIN--RVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEM---GFID 148 (337)
T ss_dssp HHHHTTTSCCCEEEECTTSCHHHHHH--HHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHT---TCHH
T ss_pred HHHHhhhcCCcEEEEECCcchHHHHh--hcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhcc---ccHH
Confidence 99998888888887777654333221 113489999999999998876 5667889999999999999888 6888
Q ss_pred HHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 181 QLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 181 ~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
.+..++... +...+++++|||+|++..+.+..++.++..+.
T Consensus 149 ~~~~~~~~~-~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 189 (337)
T 2z0m_A 149 DIKIILAQT-SNRKITGLFSATIPEEIRKVVKDFITNYEEIE 189 (337)
T ss_dssp HHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHhhC-CcccEEEEEeCcCCHHHHHHHHHhcCCceeee
Confidence 888888877 56889999999999999999999998887764
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=6.4e-30 Score=228.39 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCC--CCCeEEEECCCCchHhHHHHHHHHHHhcCCC---CCCceEEEEcccHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSP--LGRQIFACAPTGSGKTAAFLIPIIHSLRGPK---NLGFRAVIVCPTREL 93 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~--~~~~~li~apTGsGKT~~~~~~~~~~~~~~~---~~~~~~iil~Pt~~L 93 (226)
+-+.+++.+.+++|.+++|+|..+. .++ .++++++.+|||+|||++|++|+++.+.... ..++++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 5678999999999999999997775 444 6789999999999999999999998874332 335689999999999
Q ss_pred HHHHHHHHHHHhhc----CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc
Q psy12977 94 AKQTYNETVRLSEG----LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK 169 (226)
Q Consensus 94 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (226)
+.|+.+.++.+... ....+....++.............+++|+|+||+++.+.+... ....++.++++|+||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHH
Confidence 99999999998643 2345555555544333322222346899999999999888652 234577899999999999
Q ss_pred ccccCccchHHHHHHHHHhcC------CCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 170 LFEAGVRGFRDQLAVIYAACS------GPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 170 l~~~~~~~~~~~i~~i~~~~~------~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
++++ +|...+..+...++ .+.+|++++|||+++.+.+++..++.+|..+.+
T Consensus 187 l~~~---gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~ 243 (579)
T 3sqw_A 187 LLEI---GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 243 (579)
T ss_dssp HTST---TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred hhcC---CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEE
Confidence 9998 57777766665542 237799999999999999999999998877654
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=2.1e-29 Score=224.15 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=155.5
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCC--CCCeEEEECCCCchHhHHHHHHHHHHhcCCC---CCCceEEEEcccHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSP--LGRQIFACAPTGSGKTAAFLIPIIHSLRGPK---NLGFRAVIVCPTREL 93 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~--~~~~~li~apTGsGKT~~~~~~~~~~~~~~~---~~~~~~iil~Pt~~L 93 (226)
+-+.++..+.+++|.+++|+|..+. .++ .++|+++.+|||+|||++|++|+++.+.... ..++++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 5678899999999999999997775 444 5789999999999999999999998875332 234689999999999
Q ss_pred HHHHHHHHHHHhhc----CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc
Q psy12977 94 AKQTYNETVRLSEG----LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK 169 (226)
Q Consensus 94 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~ 169 (226)
+.|+.+.++.+... ....+....++.............+++|+|+||+++.+.+.+. ....++.++++|+||||+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHH
Confidence 99999999998543 2344555555544333322222457899999999999888652 123477899999999999
Q ss_pred ccccCccchHHHHHHHHHhcC------CCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 170 LFEAGVRGFRDQLAVIYAACS------GPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 170 l~~~~~~~~~~~i~~i~~~~~------~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
++++ ++...+..+...++ .+.+|++++|||+|+.+.+++..++.++..+.+
T Consensus 238 l~~~---~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~ 294 (563)
T 3i5x_A 238 LLEI---GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 294 (563)
T ss_dssp HTST---TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred Hhcc---chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE
Confidence 9998 46666666655541 347899999999999999999999988776654
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.5e-28 Score=214.05 Aligned_cols=195 Identities=20% Similarity=0.255 Sum_probs=147.0
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCC--CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLG--RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~--~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
+-+..++.+.+.++..+++.|..+. .+.++ +++++.+|||+|||++|+++++..+.. ...+++++|++|+++|+.|
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~-~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA-SVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT-TCCSCCEEEECSCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh-CCCCceEEEEECcHHHHHH
Confidence 3456677788889999999998875 55555 899999999999999999999998864 3345699999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+.+.+++++...+.......++..... ...+++|+|+||+++.+.+.+ ....+.+++++|+||+|.+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~-- 275 (508)
T 3fho_A 205 IMDVVTEMGKYTEVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQ-- 275 (508)
T ss_dssp HHHHHHHHSTTSSCCEEC---------------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC---
T ss_pred HHHHHHHhCCccCeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccC--
Confidence 999999998776666554444322211 234789999999999998887 56678999999999999998732
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCC
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGL 225 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 225 (226)
++...+..+...+ ++..|++++|||+++.+..+...++.++..+.+..
T Consensus 276 ~~~~~~~~i~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~ 323 (508)
T 3fho_A 276 GLGDQSMRIKHLL-PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT 323 (508)
T ss_dssp -CHHHHHHHHHHS-CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCC
T ss_pred CcHHHHHHHHHhC-CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecc
Confidence 5888888888888 56899999999999999999999999998887654
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=1.3e-25 Score=204.61 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=138.6
Q ss_pred HHHHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 20 IIVTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
+.+.+.+.+++.+|++++|.|+.+. .+.+++++++++|||+|||.++.+++++.+.. +.+++|++|+++|+.|++
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La~q~~ 85 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKY 85 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHHHHHH
Confidence 6778889999999999999998775 56789999999999999999999999988763 458999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
+.++.+. ..+.++....|+..... ....+++|+|+||+++...+.+ ....+++++++|+||+|.+.+..+...
T Consensus 86 ~~~~~~~-~~g~~v~~~~G~~~~~~----~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (702)
T 2p6r_A 86 ESFKKWE-KIGLRIGISTGDYESRD----EHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGAT 158 (702)
T ss_dssp HHHTTTT-TTTCCEEEECSSCBCCS----SCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHH
T ss_pred HHHHHHH-hcCCEEEEEeCCCCcch----hhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccH
Confidence 9996443 44788887777643322 2235789999999999998887 445588999999999999987632223
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~ 216 (226)
.+.+...++.. .+..|++++|||+++ ..++. .++.
T Consensus 159 ~~~ll~~l~~~-~~~~~ii~lSATl~n-~~~~~-~~l~ 193 (702)
T 2p6r_A 159 LEILVTKMRRM-NKALRVIGLSATAPN-VTEIA-EWLD 193 (702)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEECCCTT-HHHHH-HHTT
T ss_pred HHHHHHHHHhc-CcCceEEEECCCcCC-HHHHH-HHhC
Confidence 33333333333 468999999999984 33333 4444
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=4.2e-27 Score=201.90 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=134.3
Q ss_pred HHHHHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
.+..+.+++...-+++|.|..+. .+.+++|+++.+|||+|||++|+.+++.... .+++++|++|+++|+.|+.+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHHHHH
Confidence 34455555544447899997775 6778899999999999999999999887763 366899999999999999999
Q ss_pred HHHHhhcCCCeEEEEecchhhh---hhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc--
Q psy12977 101 TVRLSEGLGLRAHVIGKIQQAA---EKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV-- 175 (226)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~-- 175 (226)
++.+.+ .+.++..+.|+.... ........+.++|+|+||+++.+.+.. ..+.+++++|+||||++.+++.
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchh
Confidence 999887 788888888776542 122122234489999999999887763 4567899999999998765320
Q ss_pred ------cchHHH-HHHHHHhcC----------CCCceEEEEeee-CchhHH
Q psy12977 176 ------RGFRDQ-LAVIYAACS----------GPNLKRGMFSAT-HTEDVA 208 (226)
Q Consensus 176 ------~~~~~~-i~~i~~~~~----------~~~~q~v~~SAT-~~~~~~ 208 (226)
.++... +..++..++ .+..|++++||| .|+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 145555 666776652 167899999999 666554
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=6.1e-26 Score=202.65 Aligned_cols=187 Identities=19% Similarity=0.255 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhh-ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSN-SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~-~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
++.+...+.+++ ++|..|+|.|..+. .+++|+|+++.+|||+|||++|++|++.. +.++||++|+++|+.|
T Consensus 27 ~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~L~~q 99 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLISLMED 99 (591)
T ss_dssp TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHHHHHH
Confidence 456778888888 79999999997775 77789999999999999999999998652 3489999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhC--C---CcCCCCCEEEECchHHHH---hHhcCCCCCCCCCccEEEEcccc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFG--P---RSAQKFDVLITTPNKLVY---LLQMDPPALNLANVEWLIVDESD 168 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~IiV~Tp~~l~~---~~~~~~~~~~~~~~~~lViDE~h 168 (226)
+.+.+..+ +..+..+.++........ . .....++|+|+||+++.. ++........+.+++++|+||||
T Consensus 100 ~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH 175 (591)
T 2v1x_A 100 QLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVH 175 (591)
T ss_dssp HHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGG
T ss_pred HHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcc
Confidence 99999887 677777776654332211 0 124678999999998742 22211123346789999999999
Q ss_pred cccccC--ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCC
Q psy12977 169 KLFEAG--VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRR 218 (226)
Q Consensus 169 ~l~~~~--~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p 218 (226)
++.+++ ++.....+..+...+ +..|++++|||+++.+.+.+..++..+
T Consensus 176 ~is~~g~dfr~~~~~l~~l~~~~--~~~~ii~lSAT~~~~v~~~i~~~l~~~ 225 (591)
T 2v1x_A 176 CCSQWGHDFRPDYKALGILKRQF--PNASLIGLTATATNHVLTDAQKILCIE 225 (591)
T ss_dssp GGSTTCTTCCGGGGGGGHHHHHC--TTSEEEEEESSCCHHHHHHHHHHTTCC
T ss_pred cccccccccHHHHHHHHHHHHhC--CCCcEEEEecCCCHHHHHHHHHHhCCC
Confidence 998875 222233333444444 679999999999999988888877643
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=1.8e-25 Score=204.25 Aligned_cols=173 Identities=23% Similarity=0.252 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-c-CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-L-SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~-~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
++.+...+.+++.+|.+++|.|+.+. . +.+++++++++|||+|||.++.+++++.+... +.+++|++|+++|+.|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEE 83 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHH
Confidence 35667888999999999999998876 3 57899999999999999999999998877522 5699999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+++.++.+.+ .+.++....|+..... ....+++|+|+||+++...+.. ....+++++++|+||+|.+.+.
T Consensus 84 ~~~~~~~l~~-~g~~v~~~~G~~~~~~----~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~--- 153 (720)
T 2zj8_A 84 KFQEFQDWEK-IGLRVAMATGDYDSKD----EWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSR--- 153 (720)
T ss_dssp HHHHTGGGGG-GTCCEEEECSCSSCCC----GGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCT---
T ss_pred HHHHHHHHHh-cCCEEEEecCCCCccc----cccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCC---
Confidence 9999965544 4788887777543222 2235789999999999998887 4555889999999999999876
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
+....+..++..+. ...|++++|||+++
T Consensus 154 ~r~~~~~~ll~~l~-~~~~ii~lSATl~n 181 (720)
T 2zj8_A 154 DRGATLEVILAHML-GKAQIIGLSATIGN 181 (720)
T ss_dssp TTHHHHHHHHHHHB-TTBEEEEEECCCSC
T ss_pred cccHHHHHHHHHhh-cCCeEEEEcCCcCC
Confidence 46677777777774 38999999999874
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=6e-25 Score=200.62 Aligned_cols=172 Identities=22% Similarity=0.256 Sum_probs=139.8
Q ss_pred HHHHHHHHHHhhccccCCCCcccccc-c-CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSNSIFKHFEPHFTITY-L-SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~~~Q~~~~-~-~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
++.+...+.+++.+|.+++|.|+++. . +.+++++++++|||+|||.++.+++++.+... +.+++|++|+++|+.|
T Consensus 14 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La~q 90 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALTNE 90 (715)
T ss_dssp SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHHHH
Confidence 35678888999999999999998886 3 57899999999999999999999999877522 4699999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCcc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVR 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~ 176 (226)
+++.++.+ ...+.++....|+...... ...+++|+|+||+++...+.. ....+++++++|+||+|.+.+.
T Consensus 91 ~~~~~~~~-~~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~--- 160 (715)
T 2va8_A 91 KYLTFKDW-ELIGFKVAMTSGDYDTDDA----WLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDP--- 160 (715)
T ss_dssp HHHHHGGG-GGGTCCEEECCSCSSSCCG----GGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCT---
T ss_pred HHHHHHHh-hcCCCEEEEEeCCCCCchh----hcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCc---
Confidence 99999644 3457888877776433222 224789999999999998887 4455889999999999998765
Q ss_pred chHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 177 GFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 177 ~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
.+...+..++..+ +..|++++|||+++
T Consensus 161 ~~~~~l~~i~~~~--~~~~ii~lSATl~n 187 (715)
T 2va8_A 161 ERGPVVESVTIRA--KRRNLLALSATISN 187 (715)
T ss_dssp TTHHHHHHHHHHH--HTSEEEEEESCCTT
T ss_pred ccchHHHHHHHhc--ccCcEEEEcCCCCC
Confidence 4666777777666 38899999999874
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-25 Score=209.36 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=144.1
Q ss_pred HHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 27 VVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 27 ~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
.+...+.-+++|.|..+. .+..|++++++||||+|||++|.++++..+.. +.+++|++|+++|+.|+++.+.+++
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 344556667899997774 77889999999999999999999999988853 5699999999999999999999986
Q ss_pred hcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHH
Q psy12977 106 EGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVI 185 (226)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i 185 (226)
. .+..+.|+.. ...+++|+|+||+++.+++.+ +...+.++++||+||||++.+. ++...+..+
T Consensus 252 ~----~VglltGd~~--------~~~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~---~rg~~~e~i 314 (1108)
T 3l9o_A 252 G----DVGLMTGDIT--------INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDK---ERGVVWEET 314 (1108)
T ss_dssp S----SEEEECSSCB--------CCCSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSH---HHHHHHHHH
T ss_pred C----CccEEeCccc--------cCCCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhcccc---chHHHHHHH
Confidence 5 4555555532 335689999999999999887 5556889999999999999887 577888888
Q ss_pred HHhcCCCCceEEEEeeeCch--hHHHHHHHhcCCCeEEe
Q psy12977 186 YAACSGPNLKRGMFSATHTE--DVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 186 ~~~~~~~~~q~v~~SAT~~~--~~~~~~~~~~~~p~~i~ 222 (226)
+..+ ++..|++++|||+|. ++.+|+.....+|..+.
T Consensus 315 i~~l-~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi 352 (1108)
T 3l9o_A 315 IILL-PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIV 352 (1108)
T ss_dssp HHHS-CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEE
T ss_pred HHhc-CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 8888 678999999999886 46789988887776654
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=4.2e-25 Score=215.46 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=132.3
Q ss_pred cccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC-------CCCCceEEEEcccHHHHHHHHHHHH
Q psy12977 32 IFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP-------KNLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 32 ~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~-------~~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
+|+++|++|+..+ .+.+++|++++||||+|||+++.+++++.+.+. ...+.++||++|+++||.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 6889999998886 456789999999999999999999999988532 2246799999999999999999999
Q ss_pred HHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch-HH-
Q psy12977 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF-RD- 180 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~-~~- 180 (226)
+..+..|+++....|+.... .....+++|+|+||+++..++++......+++++++|+||+|.+.+. |+. ++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~----~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~--RG~~lE~ 229 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLC----KEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDD--RGPVLEA 229 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSC----CTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGST--THHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCC----ccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCc--cHHHHHH
Confidence 99999999998888775322 12235689999999998777665323334788999999999977653 232 22
Q ss_pred HHHHHH---HhcCCCCceEEEEeeeCc--hhHHHHH
Q psy12977 181 QLAVIY---AACSGPNLKRGMFSATHT--EDVAKWC 211 (226)
Q Consensus 181 ~i~~i~---~~~~~~~~q~v~~SAT~~--~~~~~~~ 211 (226)
.+.+++ +.. ++..|++++|||+| +++.+|+
T Consensus 230 ~l~rl~~~~~~~-~~~~riI~LSATl~N~~dvA~wL 264 (1724)
T 4f92_B 230 LVARAIRNIEMT-QEDVRLIGLSATLPNYEDVATFL 264 (1724)
T ss_dssp HHHHHHHHHHHH-TCCCEEEEEECSCTTHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCCcEEEEecccCCHHHHHHHh
Confidence 222332 233 57889999999987 4455554
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=2.1e-25 Score=217.60 Aligned_cols=184 Identities=22% Similarity=0.261 Sum_probs=140.2
Q ss_pred HHHHHHHhhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
+.....+.+..|+.|+|+|++++ ....++|++++||||||||+++.+++++.+.+. .+.+++|++|+++||.|.++
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHHHHHHH
Confidence 45667777888999999998886 445678999999999999999999999988643 24589999999999999999
Q ss_pred HHHHH-hhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 100 ETVRL-SEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
.+++. .+..+.++....|+.....+ ...+++|+|+||+++..+++++.....+++++++|+||+|.+.+..+..+
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~----~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~l 1066 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLK----LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1066 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHH----HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHH
T ss_pred HHHHHhchhcCCEEEEEECCCCcchh----hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccH
Confidence 98765 45578888888877554332 22457999999999988887755555688999999999998876532112
Q ss_pred HHHHHH---HHHhcCCCCceEEEEeeeCc--hhHHHHHH
Q psy12977 179 RDQLAV---IYAACSGPNLKRGMFSATHT--EDVAKWCR 212 (226)
Q Consensus 179 ~~~i~~---i~~~~~~~~~q~v~~SAT~~--~~~~~~~~ 212 (226)
...+.+ +.... +++.|++++|||++ +++.+|+.
T Consensus 1067 e~il~rl~~i~~~~-~~~~riI~lSATl~N~~dla~WL~ 1104 (1724)
T 4f92_B 1067 EVICSRMRYISSQI-ERPIRIVALSSSLSNAKDVAHWLG 1104 (1724)
T ss_dssp HHHHHHHHHHHHTT-SSCCEEEEEESCBTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc-CCCceEEEEeCCCCCHHHHHHHhC
Confidence 222222 22233 56899999999987 45566663
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-24 Score=199.59 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=137.2
Q ss_pred hhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 29 SNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
+...|+ +++.|..+. .+.+++++++++|||+|||++|.++++..+.. +.+++|++|+++|+.|+++.+.+++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 344554 899997775 66788999999999999999999999888753 56999999999999999999998875
Q ss_pred CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHH
Q psy12977 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYA 187 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~ 187 (226)
.+....|+.. ....++|+|+||+++.+++.+ +...+.+++++|+||+|.+.+. ++...+..++.
T Consensus 155 ---~vglltGd~~--------~~~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~---~rg~~~e~il~ 218 (1010)
T 2xgj_A 155 ---DVGLMTGDIT--------INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDK---ERGVVWEETII 218 (1010)
T ss_dssp ---CEEEECSSCE--------ECTTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCT---TTHHHHHHHHH
T ss_pred ---CEEEEeCCCc--------cCCCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhccc---chhHHHHHHHH
Confidence 4555665532 124578999999999998877 5667889999999999999887 46666777777
Q ss_pred hcCCCCceEEEEeeeCchh--HHHHHHHhcCCCeEEe
Q psy12977 188 ACSGPNLKRGMFSATHTED--VAKWCRRKLKRRVQIN 222 (226)
Q Consensus 188 ~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~p~~i~ 222 (226)
.+ ++..|++++|||+|.. ..+|+......+..+.
T Consensus 219 ~l-~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi 254 (1010)
T 2xgj_A 219 LL-PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIV 254 (1010)
T ss_dssp HS-CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEE
T ss_pred hc-CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 77 6789999999999864 4577777666665543
No 40
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.91 E-value=1.2e-24 Score=192.08 Aligned_cols=187 Identities=20% Similarity=0.225 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhh-ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHH
Q psy12977 19 SIIVTTLAVVSN-SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQ 96 (226)
Q Consensus 19 ~~~~~~l~~~~~-~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q 96 (226)
.+-+...+.+++ ++|..++|.|..+. .+++|+|+++.+|||+|||++|++|++.. ..+++|++|+++|+.|
T Consensus 8 ~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL~~q 80 (523)
T 1oyw_A 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISLMKD 80 (523)
T ss_dssp SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHHHHH
Confidence 345678888888 89999999997775 67789999999999999999999998753 2479999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 97 TYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
+.+.++.+ +.....+.++....... .....+.++|+++||+++...... ..+...+++++|+||||++.++
T Consensus 81 ~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~--~~l~~~~~~~vViDEaH~i~~~ 154 (523)
T 1oyw_A 81 QVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL--EHLAHWNPVLLAVDEAHCISQW 154 (523)
T ss_dssp HHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH--HHHTTSCEEEEEESSGGGGCTT
T ss_pred HHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH--HHHhhCCCCEEEEeCccccCcC
Confidence 99998875 66777776654332211 112245689999999998632211 2233478999999999999887
Q ss_pred Cc--cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhc--CCCeE
Q psy12977 174 GV--RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKL--KRRVQ 220 (226)
Q Consensus 174 ~~--~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~--~~p~~ 220 (226)
++ +.....+..+.+.+ ++.+++++|||+++.+.+.+.+.+ .+|..
T Consensus 155 g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 203 (523)
T 1oyw_A 155 GHDFRPEYAALGQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (523)
T ss_dssp SSCCCHHHHGGGGHHHHC--TTSCEEEEESCCCHHHHHHHHHHHTCCSCEE
T ss_pred CCccHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE
Confidence 52 22234445555555 578999999999988766554444 34443
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.91 E-value=2e-24 Score=190.81 Aligned_cols=166 Identities=20% Similarity=0.162 Sum_probs=128.7
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
+++|.|..+. .++.++++++.+|||+|||++|++|+++.+.... ..+.+++|++|+++|+.|+.+.++.++...+.++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5678886664 6668899999999999999999999998886432 2266899999999999999999999999888888
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHHHHHHHHhc--
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC-- 189 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~-- 189 (226)
..+.|+....... .....+++|+|+||+++.+.+.. +.. .+.+++++|+||||++.+.. .+...+...+...
T Consensus 84 ~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 84 ASISGATSDSVSV-QHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKLG 158 (555)
T ss_dssp EEECTTTGGGSCH-HHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHTS
T ss_pred EEEcCCCcchhhH-HHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhhc
Confidence 8888776433221 11234589999999999999876 445 68899999999999998763 3444443444332
Q ss_pred --CCCCceEEEEeeeCch
Q psy12977 190 --SGPNLKRGMFSATHTE 205 (226)
Q Consensus 190 --~~~~~q~v~~SAT~~~ 205 (226)
..+.+|++++|||++.
T Consensus 159 ~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCSCCCEEEEEESCCCC
T ss_pred cccCCCCeEEEEecCccc
Confidence 1256899999999853
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.91 E-value=3.2e-24 Score=195.05 Aligned_cols=175 Identities=19% Similarity=0.135 Sum_probs=131.5
Q ss_pred HHHHhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHHHHHHH
Q psy12977 25 LAVVSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 25 l~~~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
-..+..+++.++++.|.... .++.|+|+++.+|||+|||++|++++++.+.... ..+.+++|++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34677899999999997764 6678999999999999999999999998775322 223689999999999999999999
Q ss_pred HHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHH
Q psy12977 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQ 181 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~ 181 (226)
++.+..+.++..+.|+....... .....+++|+|+||+++.+.+.. +.+ .+.+++++|+||||++.+.. .+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i 157 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMI 157 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCH-HHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHH
T ss_pred HHhccCCceEEEEeCCccccccH-HHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHH
Confidence 99988788888887765322111 11224689999999999999886 445 68899999999999988653 34444
Q ss_pred HHHHHHh----cCCCCceEEEEeeeCc
Q psy12977 182 LAVIYAA----CSGPNLKRGMFSATHT 204 (226)
Q Consensus 182 i~~i~~~----~~~~~~q~v~~SAT~~ 204 (226)
+...+.. ..++.++++++|||+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 4333332 2246789999999986
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.91 E-value=2.1e-24 Score=190.93 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=124.4
Q ss_pred cccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 32 IFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 32 ~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
..-+++|.|..+. .++.++++++.+|||+|||++|++|+++.+.... ..+.+++|++|+++|+.|+.+.++.++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3457888997774 6668899999999999999999999998886533 2266899999999999999999999998888
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHHHHHHHHh
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAA 188 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~ 188 (226)
.++..+.|+....... .....+++|+|+||+++.+.+.. +.. .+.+++++|+||||++.+.+ .+...+...+..
T Consensus 84 ~~~~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~ 158 (556)
T 4a2p_A 84 YSVQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLEQ 158 (556)
T ss_dssp CCEEECCCC-----CH-HHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS--HHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcchhH-HHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc--hHHHHHHHHHHh
Confidence 8888887775332211 11224589999999999999876 455 78999999999999998773 233333333322
Q ss_pred -cC--CCCceEEEEeeeCc
Q psy12977 189 -CS--GPNLKRGMFSATHT 204 (226)
Q Consensus 189 -~~--~~~~q~v~~SAT~~ 204 (226)
+. .+..|++++|||++
T Consensus 159 ~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHCC---CCEEEEEESCCC
T ss_pred hhcccCCCCeEEEEeCCcc
Confidence 21 35689999999985
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=1.7e-24 Score=204.57 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=129.7
Q ss_pred ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 31 SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 31 ~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
.+| +++|+|..+. .++.|+|++++||||+|||++++.+++..+. .+++++|++||++||.|+.+.++.+. ..+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 455 6999997774 7788999999999999999998888887773 36689999999999999999999977 667
Q ss_pred CeEEEEecchhh---hhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC-------c-cch
Q psy12977 110 LRAHVIGKIQQA---AEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG-------V-RGF 178 (226)
Q Consensus 110 ~~~~~~~~~~~~---~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~-------~-~~~ 178 (226)
.++..+.|+... .........+.++|+|+||+++.+++.. +.+.+++++|+||||++.+.+ . .+|
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 888888877654 2222222234589999999999887763 456789999999998766521 0 145
Q ss_pred HHH-HHHHHHhcC----------CCCceEEEEeee-CchhHH
Q psy12977 179 RDQ-LAVIYAACS----------GPNLKRGMFSAT-HTEDVA 208 (226)
Q Consensus 179 ~~~-i~~i~~~~~----------~~~~q~v~~SAT-~~~~~~ 208 (226)
... +..+++.++ .+..|++++||| .|+.+.
T Consensus 225 ~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~ 266 (1104)
T 4ddu_A 225 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 266 (1104)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSST
T ss_pred CHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHH
Confidence 555 777777662 167899999999 666554
No 45
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=165.93 Aligned_cols=168 Identities=16% Similarity=0.121 Sum_probs=120.3
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcC-CCCCCceEEEEcccHHHHHHHHHHHHHHhh-cCCCe
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSE-GLGLR 111 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~-~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~-~~~~~ 111 (226)
.++++|.... .+..|+++++.||||||||..+..++++.... ....+.+++++.|+++++.|+.+.+..... ..+..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4677786664 66788999999999999999888888776532 222345899999999999999888766543 23333
Q ss_pred EEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc-cccCccchH-HHHHHHHHhc
Q psy12977 112 AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL-FEAGVRGFR-DQLAVIYAAC 189 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l-~~~~~~~~~-~~i~~i~~~~ 189 (226)
+...... .. .....+++|+|+||+++.+.+.. .+++++++|+||+|.+ .+. ++. ..+..+....
T Consensus 141 ~g~~~~~----~~--~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~~~---~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 141 CGYSVRF----ES--ILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDINT---DFLLVVLRDVVQAY 206 (235)
T ss_dssp EEEEETT----EE--ECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCHHH---HHHHHHHHHHHHHC
T ss_pred EEEeech----hh--ccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCcch---HHHHHHHHHHHhhC
Confidence 3321111 11 11125688999999999999876 2789999999999985 555 455 4666666665
Q ss_pred CCCCceEEEEeeeCchhHHHHHHHhcCCCeEE
Q psy12977 190 SGPNLKRGMFSATHTEDVAKWCRRKLKRRVQI 221 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i 221 (226)
++.|++++|||++.+. +.+|+.+.-.+
T Consensus 207 --~~~~~il~SAT~~~~~---~~~~~~~~pvi 233 (235)
T 3llm_A 207 --PEVRIVLMSATIDTSM---FCEYFFNCPII 233 (235)
T ss_dssp --TTSEEEEEECSSCCHH---HHHHTTSCCCE
T ss_pred --CCCeEEEEecCCCHHH---HHHHcCCCCEE
Confidence 5799999999999776 44555544333
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.90 E-value=2.4e-23 Score=192.10 Aligned_cols=170 Identities=17% Similarity=0.126 Sum_probs=127.5
Q ss_pred hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHHHHHHHHHhhc
Q psy12977 30 NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETVRLSEG 107 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~~~~~~~~~~~ 107 (226)
.+++.+++|.|..+. .++.|+++++.+|||+|||++|++|++..+.... ..+.+++|++|+++|+.|+.+.++.++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 456788999997774 6678899999999999999999999998886532 22668999999999999999999999988
Q ss_pred CCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
.+.++..+.|+....... .....+++|+|+||+++.+.+.. ..+ .+.+++++|+||||++.+.. .+...+....
T Consensus 323 ~~~~v~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~ 397 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYL 397 (797)
T ss_dssp GTCCEEEECCC-----CH-HHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhH-HHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHH
Confidence 888888888776332211 12235689999999999999876 455 78899999999999998763 2333333333
Q ss_pred Hhc---CCCCceEEEEeeeCc
Q psy12977 187 AAC---SGPNLKRGMFSATHT 204 (226)
Q Consensus 187 ~~~---~~~~~q~v~~SAT~~ 204 (226)
... ..+.+|++++|||++
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCC
T ss_pred HHhhccCCCCCeEEEEcCCcc
Confidence 321 145689999999985
No 47
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=168.75 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=111.9
Q ss_pred hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccHHHHHH-HHHHHHHHh
Q psy12977 30 NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTRELAKQ-TYNETVRLS 105 (226)
Q Consensus 30 ~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~~L~~q-~~~~~~~~~ 105 (226)
.....++++.|..+. .+..++++++.+|||+|||++++.++...+... ...+.+++|++|+++|+.| +.+.+..+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 344457888997775 566789999999999999999999988766421 1235689999999999999 777888876
Q ss_pred hcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCC----CCCCCCccEEEEcccccccccCccchHHH
Q psy12977 106 EGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPP----ALNLANVEWLIVDESDKLFEAGVRGFRDQ 181 (226)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~----~~~~~~~~~lViDE~h~l~~~~~~~~~~~ 181 (226)
.. +..+....++....... .....+++|+|+||+.+.+.+..... ...+.+++++|+||||++.+. ++...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~---~~~~~ 182 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE---AVYNN 182 (216)
T ss_dssp TT-TSCEEECCC---CCCCH-HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----------CHHH
T ss_pred cc-CceEEEEeCCcccchhH-HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC---CcHHH
Confidence 65 56666655543211110 01123588999999999998876321 256788999999999999765 34444
Q ss_pred H-HHHHHhc------------CCCCceEEEEeee
Q psy12977 182 L-AVIYAAC------------SGPNLKRGMFSAT 202 (226)
Q Consensus 182 i-~~i~~~~------------~~~~~q~v~~SAT 202 (226)
+ ..+.... ..+.++++++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 2322211 1267899999998
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.89 E-value=1.6e-23 Score=189.77 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHh-----hccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 18 ISIIVTTLAVVS-----NSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 18 ~~~~~~~l~~~~-----~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
..++|..++.++ ..+| .++++|.... .+++|+ +..++||+|||++|.+|++..... +++++|++||+
T Consensus 62 d~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptr 134 (844)
T 1tf5_A 62 DDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNE 134 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCH
Confidence 445666666555 4788 9999997774 667777 999999999999999999844322 55899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcC----CCCCCCCCccEEEEcc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMD----PPALNLANVEWLIVDE 166 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~----~~~~~~~~~~~lViDE 166 (226)
+||.|..+++..+...++.++.++.++.....+ ....++||+|+||+++ ++++... .+...+..+.++|+||
T Consensus 135 eLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r---~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDE 211 (844)
T 1tf5_A 135 YLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK---REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDE 211 (844)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH---HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEET
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH---HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECc
Confidence 999999999999999999999988887654333 2345799999999999 5555432 2346688999999999
Q ss_pred ccccc-ccCcc------------chHHHHHHHHHhcCC--------CCceEE-----------------EEeeeCc---h
Q psy12977 167 SDKLF-EAGVR------------GFRDQLAVIYAACSG--------PNLKRG-----------------MFSATHT---E 205 (226)
Q Consensus 167 ~h~l~-~~~~~------------~~~~~i~~i~~~~~~--------~~~q~v-----------------~~SAT~~---~ 205 (226)
||.++ +.+.. ++...+..+...++. +..|+. ++|||.+ .
T Consensus 212 aD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~ 291 (844)
T 1tf5_A 212 VDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNH 291 (844)
T ss_dssp HHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHH
T ss_pred hhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHH
Confidence 99988 55311 377889999998853 467887 8999977 4
Q ss_pred hHHHHH
Q psy12977 206 DVAKWC 211 (226)
Q Consensus 206 ~~~~~~ 211 (226)
.+.+.+
T Consensus 292 ~i~~al 297 (844)
T 1tf5_A 292 HINQAL 297 (844)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=4.8e-23 Score=193.20 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=128.1
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++++.|..+. .+.+|+++++.+|||+|||++|++++...... +.+++|++|+++|+.|+++.+++.+. +..+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~ 112 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKETFD--DVNIG 112 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTTC----CCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEE
Confidence 4788997664 77789999999999999999999988877653 56899999999999999999888754 56677
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
...|+.. ....++|+|+||+++.+.+.. ....+.+++++|+||+|++.+++ +...+..++..+ ++.
T Consensus 113 ~l~G~~~--------~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~---~g~~~e~ii~~l-~~~ 178 (997)
T 4a4z_A 113 LITGDVQ--------INPDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQD---RGVVWEEVIIML-PQH 178 (997)
T ss_dssp EECSSCE--------ECTTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTC---TTCCHHHHHHHS-CTT
T ss_pred EEeCCCc--------cCCCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccc---hHHHHHHHHHhc-ccC
Confidence 7766532 224578999999999998876 56668899999999999998883 555566666677 578
Q ss_pred ceEEEEeeeCch--hHHHHHHHhc
Q psy12977 194 LKRGMFSATHTE--DVAKWCRRKL 215 (226)
Q Consensus 194 ~q~v~~SAT~~~--~~~~~~~~~~ 215 (226)
.|++++|||+|+ +..+|+....
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~ 202 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTK 202 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCChHHHHHHHhccc
Confidence 999999999874 4566665443
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.89 E-value=2.3e-24 Score=203.40 Aligned_cols=172 Identities=19% Similarity=0.158 Sum_probs=130.6
Q ss_pred HhhccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 28 VSNSIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 28 ~~~~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
.+.++|. + ++|..+. .+++|+|+++.+|||||||+ |.+|++..+.. .+++++|++||++|+.|+.+.++.++.
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3458999 8 9997775 67789999999999999998 88888877653 356899999999999999999999998
Q ss_pred cCCC----eEEEEecchhhhhh--hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHH
Q psy12977 107 GLGL----RAHVIGKIQQAAEK--FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRD 180 (226)
Q Consensus 107 ~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~ 180 (226)
..+. ++....|+...... ....+.. ++|+|+||+++.+++.+ +++++++|+||||++++.+ .
T Consensus 125 ~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~~~-----~ 192 (1054)
T 1gku_B 125 KAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILKAS-----K 192 (1054)
T ss_dssp TTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHTST-----H
T ss_pred hcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhhcc-----c
Confidence 8887 78777776544331 1122333 89999999999987764 6689999999999998742 3
Q ss_pred HHHHHHHhcC----------CCCceEEEEeeeCchhHHHHHHHhcCCC
Q psy12977 181 QLAVIYAACS----------GPNLKRGMFSATHTEDVAKWCRRKLKRR 218 (226)
Q Consensus 181 ~i~~i~~~~~----------~~~~q~v~~SAT~~~~~~~~~~~~~~~p 218 (226)
.+..++..+. +...|++++|||.+.. ..+...++.++
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~ 239 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQL 239 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHH
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcc
Confidence 4444444431 3467899999998876 53443443333
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.88 E-value=1.8e-22 Score=188.78 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=126.7
Q ss_pred ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC-CCCceEEEEcccHHHHHHHHHHHHHHhhcC
Q psy12977 31 SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK-NLGFRAVIVCPTRELAKQTYNETVRLSEGL 108 (226)
Q Consensus 31 ~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~-~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~ 108 (226)
.++.+++|.|..+. .++.|+++++.+|||+|||++|++|++..+.... ..+.+++|++|+++|+.|+.+.++.++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34678899997764 6678999999999999999999999988876432 125689999999999999999999999888
Q ss_pred CCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCC-CCCCccEEEEcccccccccCccchHHHHHHHHH
Q psy12977 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL-NLANVEWLIVDESDKLFEAGVRGFRDQLAVIYA 187 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~-~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~ 187 (226)
+.++..+.|+...... ......+++|+|+||+++.+.+.. ... .+.+++++|+||||++.+.. .+...+..+..
T Consensus 324 ~~~v~~~~G~~~~~~~-~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~~ 398 (936)
T 4a2w_A 324 GYSVQGISGENFSNVS-VEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (936)
T ss_dssp TCCEEEECCC-----C-CHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred CceEEEEECCcchhhH-HHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 8888888877533221 112234689999999999999886 444 68899999999999988763 24444434433
Q ss_pred hc---CCCCceEEEEeeeCc
Q psy12977 188 AC---SGPNLKRGMFSATHT 204 (226)
Q Consensus 188 ~~---~~~~~q~v~~SAT~~ 204 (226)
.. ..+..|++++|||++
T Consensus 399 ~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCC
T ss_pred HhhccCCCcCeEEEecCCcc
Confidence 21 145689999999985
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=6.1e-22 Score=171.30 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=124.8
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++.|.|.... .+..+ ++++.+|||+|||++++.++...+. ..+.+++|++|+++|+.|+.+.+.++.......+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 5678886664 45555 9999999999999999999888765 23558999999999999999999998754445777
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
.+.|+....... ....+++|+|+||+.+.+.+.. +.....+++++|+||||++.+. .....+...+... .+.
T Consensus 85 ~~~g~~~~~~~~--~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~---~~~~~~~~~~~~~-~~~ 156 (494)
T 1wp9_A 85 ALTGEKSPEERS--KAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGN---YAYVFIAREYKRQ-AKN 156 (494)
T ss_dssp EECSCSCHHHHH--HHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTT---CHHHHHHHHHHHH-CSS
T ss_pred EeeCCcchhhhh--hhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCC---CcHHHHHHHHHhc-CCC
Confidence 776665433221 1123578999999999998876 5667889999999999999765 2344444444444 467
Q ss_pred ceEEEEeeeCch---hHHHHHHH
Q psy12977 194 LKRGMFSATHTE---DVAKWCRR 213 (226)
Q Consensus 194 ~q~v~~SAT~~~---~~~~~~~~ 213 (226)
.+++++|||++. ++.+++..
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHh
Confidence 899999999873 34455543
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.3e-22 Score=165.68 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=114.1
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++++.|..+. ....+++.++.+|||+|||.+++.++...+... +.+++|++|+++|+.|+.+.++++.......+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhcccccceEE
Confidence 6777787765 455567889999999999999988777666421 338999999999999999999998765556666
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
.+.++..... ....+++|+|+||+.+.+. ....+.+++++|+||||++.+. .+..+++.+ .+.
T Consensus 190 ~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~-----~~~~~~~~~~vIiDEaH~~~~~-------~~~~il~~~-~~~ 252 (282)
T 1rif_A 190 KIGGGASKDD----KYKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLATGK-------SISSIISGL-NNC 252 (282)
T ss_dssp ECSTTCSSTT----CCCTTCSEEEECHHHHTTS-----CGGGGGGEEEEEEETGGGCCHH-------HHHHHTTTC-TTC
T ss_pred EEeCCCcchh----hhccCCcEEEEchHHHHhh-----HHHHHhhCCEEEEECCccCCcc-------cHHHHHHHh-hcC
Confidence 6655532221 2336789999999876443 2234678899999999998643 555666666 457
Q ss_pred ceEEEEeeeCchhH
Q psy12977 194 LKRGMFSATHTEDV 207 (226)
Q Consensus 194 ~q~v~~SAT~~~~~ 207 (226)
.+++++|||+++..
T Consensus 253 ~~~l~lSATp~~~~ 266 (282)
T 1rif_A 253 MFKFGLSGSLRDGK 266 (282)
T ss_dssp CEEEEECSSCCTTS
T ss_pred CeEEEEeCCCCCcc
Confidence 99999999998653
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.86 E-value=2.8e-22 Score=181.39 Aligned_cols=165 Identities=20% Similarity=0.144 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
+..+.|...+.+++..+. .++++|.... .++.|+ +..++||+|||++|.+|++..... +++++|++||+
T Consensus 52 ld~~lpeafA~vrea~~R~lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTr 125 (853)
T 2fsf_A 52 LENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVND 125 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSH
T ss_pred hhhhhHHHHHHHHHHHHHHcCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCH
Confidence 455677888877776664 8899997774 666776 999999999999999999865432 55899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCC----CCCCCCCccEEEEcc
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDP----PALNLANVEWLIVDE 166 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~----~~~~~~~~~~lViDE 166 (226)
+||.|+++++..+.+.++.++..+.|+.....+ ....+++|+|+||+++ ++++.... +...+++++++|+||
T Consensus 126 eLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r---~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDE 202 (853)
T 2fsf_A 126 YLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK---REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDE 202 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH---HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESC
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH---HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECc
Confidence 999999999999999999999988887654322 2345789999999999 67776421 236688999999999
Q ss_pred ccccc-ccCc------------cchHHHHHHHHHhcC
Q psy12977 167 SDKLF-EAGV------------RGFRDQLAVIYAACS 190 (226)
Q Consensus 167 ~h~l~-~~~~------------~~~~~~i~~i~~~~~ 190 (226)
||.++ +.+. .++...+..+...++
T Consensus 203 aD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 203 VDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp HHHHTTTTTTCEEEEEEC-------------------
T ss_pred hHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 99998 4321 135667777777774
No 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.86 E-value=1.2e-21 Score=169.90 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=116.5
Q ss_pred cccCCCCcccccccCCCCCeE-EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC
Q psy12977 32 IFKHFEPHFTITYLSPLGRQI-FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL 110 (226)
Q Consensus 32 ~~~~~~~~Q~~~~~~~~~~~~-li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~ 110 (226)
|+..++|+|+..+.+++++++ ++++|||||||.+|++|++..+.. .+.+++|++||++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCCCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHHHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 567889999877777777766 999999999999999998876543 25689999999999999999774 22
Q ss_pred eEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcC
Q psy12977 111 RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS 190 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~ 190 (226)
.+...... .......+..|.++|++.+.+.+.+. ..+.+++++|+||+|.+ +. .+...+..+.....
T Consensus 72 ~v~~~~~~------~~~~~~~~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~-~~---~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 72 PIRYQTPA------VKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFT-DP---CSVAARGYISTRVE 138 (451)
T ss_dssp CEEECCTT------CSCCCCSSCCEEEEEHHHHHHHHHHC---SCCCCCSEEEEETTTCC-SH---HHHHHHHHHHHHHH
T ss_pred eeeeeecc------ccccCCCCceEEEEChHHHHHHhhCc---ccccCCCEEEEeCCccC-Cc---chHHHHHHHHHhhc
Confidence 22211111 11122345679999999998877653 45789999999999977 33 23333333333333
Q ss_pred CCCceEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 191 GPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 191 ~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
.++.|+++||||+|.+...+ +..++..+.
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~ 167 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIED 167 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEE
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEe
Confidence 56899999999998765433 234454444
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.86 E-value=1.1e-21 Score=177.85 Aligned_cols=187 Identities=21% Similarity=0.194 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhh-----ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 17 VISIIVTTLAVVSN-----SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 17 ~~~~~~~~l~~~~~-----~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
+..+.|...+.+++ .++ .++++|.... .++.|+ +..++||+|||++|.+|++..... +.+++|++||
T Consensus 89 ld~~lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpT 161 (922)
T 1nkt_A 89 LDDLLPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVN 161 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCC
Confidence 45566776666655 444 8999997774 566776 999999999999999999754332 4589999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcC----CCCCCCCCccEEEEc
Q psy12977 91 RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMD----PPALNLANVEWLIVD 165 (226)
Q Consensus 91 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~----~~~~~~~~~~~lViD 165 (226)
++||.|..+++..+...+++++.++.++.....+ ....++||+++||++| ++++... .+...+..+.++|+|
T Consensus 162 reLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r---~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVD 238 (922)
T 1nkt_A 162 DYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER---RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVD 238 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH---HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEET
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH---HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEe
Confidence 9999999999999999999999988887654332 2345789999999999 6766542 134668899999999
Q ss_pred cccccc-ccCc------------cchHHHHHHHHHhcCC--------CCceEE-----------------EEeeeCch--
Q psy12977 166 ESDKLF-EAGV------------RGFRDQLAVIYAACSG--------PNLKRG-----------------MFSATHTE-- 205 (226)
Q Consensus 166 E~h~l~-~~~~------------~~~~~~i~~i~~~~~~--------~~~q~v-----------------~~SAT~~~-- 205 (226)
|||+++ +.+. .++...+..+...++. +..|+. ++|||.++
T Consensus 239 EaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~ 318 (922)
T 1nkt_A 239 EVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLV 318 (922)
T ss_dssp THHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHH
T ss_pred ChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHH
Confidence 999998 4311 2477899999999952 678888 89999764
Q ss_pred -hHHHHHHH
Q psy12977 206 -DVAKWCRR 213 (226)
Q Consensus 206 -~~~~~~~~ 213 (226)
.+.+.++.
T Consensus 319 ~~i~~aL~A 327 (922)
T 1nkt_A 319 SYLNNALKA 327 (922)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55554433
No 57
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=3.4e-22 Score=179.20 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=127.0
Q ss_pred echhhhhhhHHHHHHHHHHHhhccccCCCCccccc-ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEE
Q psy12977 9 LGIFTIGFVISIIVTTLAVVSNSIFKHFEPHFTIT-YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIV 87 (226)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Q~~~-~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil 87 (226)
+|+|..++ +.+.+..++.+... .+.++|+|+.. +.+.+++|+++.+|||||||++|++|+++.+.. .+.+++|+
T Consensus 147 vg~~~~~~-l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl 221 (618)
T 2whx_A 147 IGLYGNGV-VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLIL 221 (618)
T ss_dssp EEECCC----------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEE
T ss_pred eccccccc-ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEE
Confidence 46666553 12223333333332 47788888655 477889999999999999999999999988754 35689999
Q ss_pred cccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccc
Q psy12977 88 CPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167 (226)
Q Consensus 88 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~ 167 (226)
+||++||.|+.+.++ +..+.. ... ........+..+.++|.+.+.+.+... ..+++++++|+|||
T Consensus 222 ~PtreLa~Qi~~~l~------~~~v~~-~~~-----~l~~~~tp~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEa 286 (618)
T 2whx_A 222 APTRVVAAEMEEALR------GLPIRY-QTP-----AVKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEA 286 (618)
T ss_dssp ESSHHHHHHHHHHTT------TSCEEE-CCT-----TSSCCCCSSSCEEEEEHHHHHHHHHHC---SSCCCCSEEEEEST
T ss_pred cChHHHHHHHHHHhc------CCceeE-ecc-----cceeccCCCceEEEEChHHHHHHHhcc---ccccCCeEEEEECC
Confidence 999999999998775 222221 111 111122334567788888887766652 45889999999999
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEec
Q psy12977 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223 (226)
Q Consensus 168 h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~ 223 (226)
|++ +. ++...+..+.+.++.+..|+++||||+|+.+..+.. .++..+.+
T Consensus 287 h~~-~~---~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v 335 (618)
T 2whx_A 287 HFT-DP---CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDI 335 (618)
T ss_dssp TCC-SH---HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEE
T ss_pred CCC-Cc---cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeee
Confidence 998 44 577777777777644789999999999987654433 24544443
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.85 E-value=5.8e-22 Score=174.18 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=119.0
Q ss_pred cCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeE
Q psy12977 34 KHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~ 112 (226)
.+++|.|..+. .+..+++.++++|||+|||.+++.++...+... +.+++|++|+++|+.|+.+.++++....+..+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 37888897764 556678999999999999999999888777532 34999999999999999999988866555677
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
..+.++...... ....++|+|+||+.+... ....+.+++++|+||+|++.+. .+..+++.+ .+
T Consensus 189 ~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~~-----~~~~~~~~~liIiDE~H~~~~~-------~~~~il~~~-~~ 251 (510)
T 2oca_A 189 KKIGGGASKDDK----YKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLATGK-------SISSIISGL-NN 251 (510)
T ss_dssp EECGGGCCTTGG----GCTTCSEEEEEHHHHTTS-----CGGGGGGEEEEEEETGGGCCHH-------HHHHHGGGC-TT
T ss_pred EEEecCCccccc----cccCCcEEEEeHHHHhhc-----hhhhhhcCCEEEEECCcCCCcc-------cHHHHHHhc-cc
Confidence 766666433332 346789999999976432 2345778999999999998653 455666666 56
Q ss_pred CceEEEEeeeCchhH
Q psy12977 193 NLKRGMFSATHTEDV 207 (226)
Q Consensus 193 ~~q~v~~SAT~~~~~ 207 (226)
..+++++|||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 252 CMFKFGLSGSLRDGK 266 (510)
T ss_dssp CCEEEEEESCGGGCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 789999999998664
No 59
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=183.01 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=117.4
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC--CCCceEEEEcccHHHHHHH-HHHHHHHhhcCCC
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK--NLGFRAVIVCPTRELAKQT-YNETVRLSEGLGL 110 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~--~~~~~~iil~Pt~~L~~q~-~~~~~~~~~~~~~ 110 (226)
+++|.|..+. .++.|+++++.+|||+|||++|++|++..+.... ..+.++||++|+++|+.|+ .+.+++++.. +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 5778886664 6677899999999999999999999988764321 1235899999999999999 9999999875 46
Q ss_pred eEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhc----CCCCCCCCCccEEEEcccccccccCccchHHHHHHHH
Q psy12977 111 RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQM----DPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIY 186 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~----~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~ 186 (226)
.+..+.|+....... ......++|+|+||+++.+.+.. ....+.+.+++++|+||||++.... .+...+...+
T Consensus 86 ~v~~~~g~~~~~~~~-~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~--~~~~i~~~~l 162 (699)
T 4gl2_A 86 RVIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA--VYNNIMRHYL 162 (699)
T ss_dssp CEEEEC----CCCCH-HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTB--SSCSHHHHHH
T ss_pred eEEEEeCCcchhhHH-HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccc--hHHHHHHHHH
Confidence 777777664322111 11225689999999999988742 1245678899999999999886542 2222222222
Q ss_pred Hh----c--------CCCCceEEEEeeeCch
Q psy12977 187 AA----C--------SGPNLKRGMFSATHTE 205 (226)
Q Consensus 187 ~~----~--------~~~~~q~v~~SAT~~~ 205 (226)
.. . ..+.+|++++|||++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HhhhcccccccccccCCCCCEEEEecccccc
Confidence 11 1 1256799999999886
No 60
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.85 E-value=1.2e-21 Score=179.04 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=121.3
Q ss_pred HHHhhccccCCCCcccccc-cCCCC------CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 26 AVVSNSIFKHFEPHFTITY-LSPLG------RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 26 ~~~~~~~~~~~~~~Q~~~~-~~~~~------~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
+.+++.+| ++++.|..+. .+..+ .+.++++|||||||.+|+.+++..+.. +.+++|++||++|+.|++
T Consensus 360 ~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 360 EFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHH
Confidence 34567788 8999997664 33222 589999999999999999999988763 568999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCc
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGV 175 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~ 175 (226)
+.++++....+.++..+.|+.....+. .....+.++|+|+||+.+.+ ...+.+++++|+||+|++....
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~q- 506 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQ- 506 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHH-
Confidence 999999988889998888776543321 11223568999999987743 3457899999999999874331
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
. ..+... ...+++++||||+.++....
T Consensus 507 ---r----~~l~~~-~~~~~vL~mSATp~p~tl~~ 533 (780)
T 1gm5_A 507 ---R----EALMNK-GKMVDTLVMSATPIPRSMAL 533 (780)
T ss_dssp --------CCCCSS-SSCCCEEEEESSCCCHHHHH
T ss_pred ---H----HHHHHh-CCCCCEEEEeCCCCHHHHHH
Confidence 0 111111 24689999999977655443
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.83 E-value=4.5e-20 Score=165.29 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=108.6
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
.+.+.|...+ .+.++++++++||||||||.++.+++++. +.+++|++|+++||.|+++.+.+.. +..+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPN 286 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-------CCeEEEEcchHHHHHHHHHHHHHHh---CCCee
Confidence 4445565555 55677899999999999999999888762 4589999999999999998765554 44444
Q ss_pred EEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPN 193 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~ 193 (226)
...++.. ...+++|+|+||+++. .. ..+.+++++++|+||+|.+ +. ++...+..+++.++...
T Consensus 287 ~~vG~~~--------~~~~~~IlV~TPGrLl---~~--~~l~l~~l~~lVlDEAH~l-~~---~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 287 IRTGVRT--------ITTGAPVTYSTYGKFL---AD--GGCSGGAYDIIICDECHST-DS---TTILGIGTVLDQAETAG 349 (666)
T ss_dssp EECSSCE--------ECCCCSEEEEEHHHHH---HT--TSCCTTSCSEEEETTTTCC-SH---HHHHHHHHHHHHTTTTT
T ss_pred EEECcEe--------ccCCCCEEEECcHHHH---hC--CCcccCcccEEEEccchhc-Cc---cHHHHHHHHHHhhhhcC
Confidence 4444421 3467899999999973 33 5677889999999999754 44 47778888888884322
Q ss_pred -ceEEEEeeeCchh
Q psy12977 194 -LKRGMFSATHTED 206 (226)
Q Consensus 194 -~q~v~~SAT~~~~ 206 (226)
..++++|||+|+.
T Consensus 350 ~~llil~SAT~~~~ 363 (666)
T 3o8b_A 350 ARLVVLATATPPGS 363 (666)
T ss_dssp CSEEEEEESSCTTC
T ss_pred CceEEEECCCCCcc
Confidence 2377889999874
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.83 E-value=3e-20 Score=176.54 Aligned_cols=173 Identities=19% Similarity=0.217 Sum_probs=126.0
Q ss_pred hhccccCCCCcccccc-cCCC----CC--eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 29 SNSIFKHFEPHFTITY-LSPL----GR--QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 29 ~~~~~~~~~~~Q~~~~-~~~~----~~--~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
..++|+ ++|.|..+. .+.. ++ +.++++|||+|||.+++.+++..+.. +.+++|++||++|+.|+++.+
T Consensus 598 ~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 598 DSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechHHHHHHHHHHH
Confidence 345565 599997764 3322 55 99999999999999999888877653 569999999999999999999
Q ss_pred HHHhhcCCCeEEEEecchhhhhh---hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 102 VRLSEGLGLRAHVIGKIQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
++.+...+.++....+....... ......+.++|+|+||+.+. ..+.+.+++++|+||+|++... .
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g~~----~ 741 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFGVR----H 741 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSCHH----H
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcChH----H
Confidence 99988878888877654332221 11122356899999997652 3456889999999999996322 2
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEe
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~ 222 (226)
...++.+ ....+++++|||+++.........+.++..+.
T Consensus 742 ----~~~l~~l-~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~ 780 (1151)
T 2eyq_A 742 ----KERIKAM-RANVDILTLTATPIPRTLNMAMSGMRDLSIIA 780 (1151)
T ss_dssp ----HHHHHHH-HTTSEEEEEESSCCCHHHHHHHTTTSEEEECC
T ss_pred ----HHHHHHh-cCCCCEEEEcCCCChhhHHHHHhcCCCceEEe
Confidence 2333344 35789999999988777777766666555443
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.81 E-value=6.7e-20 Score=159.58 Aligned_cols=135 Identities=19% Similarity=0.084 Sum_probs=105.3
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe-E
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR-A 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~-~ 112 (226)
+++|.|..+. .+..+++.++.+|||+|||+.++.++... +.+++|++|+++|+.|+.+.++++ +.. +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----CCcce
Confidence 5677886664 55677889999999999999998887764 458999999999999999988884 666 6
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
..+.++.. ..++|+|+|++.+....... ..+++++|+||+|++.+. .+.. +.+.+ +
T Consensus 162 ~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~---~~~~----~~~~~--~ 217 (472)
T 2fwr_A 162 GEFSGRIK----------ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAE---SYVQ----IAQMS--I 217 (472)
T ss_dssp EEBSSSCB----------CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTST---TTHH----HHHTC--C
T ss_pred EEECCCcC----------CcCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCCh---HHHH----HHHhc--C
Confidence 66665532 35789999999998876531 235899999999999876 3433 44444 5
Q ss_pred CceEEEEeeeCc
Q psy12977 193 NLKRGMFSATHT 204 (226)
Q Consensus 193 ~~q~v~~SAT~~ 204 (226)
..+++++|||++
T Consensus 218 ~~~~l~lSATp~ 229 (472)
T 2fwr_A 218 APFRLGLTATFE 229 (472)
T ss_dssp CSEEEEEESCCC
T ss_pred CCeEEEEecCcc
Confidence 678999999987
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=1.9e-19 Score=143.51 Aligned_cols=137 Identities=19% Similarity=0.085 Sum_probs=101.9
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe-E
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR-A 112 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~-~ 112 (226)
++++.|..+. .+..+++.++++|||+|||..++.++... +.+++|++|+++|+.|+.+.+.++ +.. +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeE
Confidence 5566776554 45667789999999999999987776543 347999999999999999988773 556 6
Q ss_pred EEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
..+.++.. ...+|+|+|++.+....... ..+++++|+||+|.+.+. .+. .+.+.+ +
T Consensus 162 ~~~~g~~~----------~~~~i~v~T~~~l~~~~~~~-----~~~~~llIiDEaH~l~~~---~~~----~i~~~~--~ 217 (237)
T 2fz4_A 162 GEFSGRIK----------ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAE---SYV----QIAQMS--I 217 (237)
T ss_dssp EEESSSCB----------CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEECSSCCCTT---THH----HHHHTC--C
T ss_pred EEEeCCCC----------CcCCEEEEeHHHHHhhHHHh-----cccCCEEEEECCccCCCh---HHH----HHHHhc--c
Confidence 66655432 35689999999988766531 245899999999999765 332 344455 4
Q ss_pred CceEEEEeeeCchh
Q psy12977 193 NLKRGMFSATHTED 206 (226)
Q Consensus 193 ~~q~v~~SAT~~~~ 206 (226)
..+++++|||+++.
T Consensus 218 ~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 APFRLGLTATFERE 231 (237)
T ss_dssp CSEEEEEEESCC--
T ss_pred CCEEEEEecCCCCC
Confidence 67899999998753
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.79 E-value=1.1e-20 Score=163.57 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=96.1
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
.+.+|+|+++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.++.+ + +....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~------ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQA------ 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSC------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEeccc------
Confidence 45789999999999999999999999987653 2568999999999999999987633 2 2111100
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhc------CCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEE
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQM------DPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM 198 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~------~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~ 198 (226)
. -.++||+++.+++.. ......+.+++++|+||+|++ +. ++...+..+.+....+++|+++
T Consensus 69 ~---------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~---~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 69 F---------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DP---ASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp C---------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SH---HHHHHHHHHHHHHHTTSCEEEE
T ss_pred c---------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Cc---chHHHHHHHHHHhccCCceEEE
Confidence 0 026666555432221 112345789999999999998 33 3444444444444346899999
Q ss_pred EeeeCchhHHHHH
Q psy12977 199 FSATHTEDVAKWC 211 (226)
Q Consensus 199 ~SAT~~~~~~~~~ 211 (226)
||||+++.+..+.
T Consensus 136 ~SAT~~~~~~~~~ 148 (440)
T 1yks_A 136 MTATPPGTSDEFP 148 (440)
T ss_dssp ECSSCTTCCCSSC
T ss_pred EeCCCCchhhhhh
Confidence 9999987754433
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.78 E-value=4.9e-19 Score=153.87 Aligned_cols=144 Identities=18% Similarity=0.104 Sum_probs=97.7
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
.+.+++++++++|||||||++|++|+++.+.. .+.+++|++|+++|+.|+.+.++ +..+........
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~---- 83 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ---- 83 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccc----
Confidence 56778999999999999999999999987653 25689999999999999999876 222221111100
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.....+..+.++|.+.+.+.+.. ...+.+++++|+||||..... ....+..+......+..|+++||||+|
T Consensus 84 --~~~t~~~~i~~~~~~~l~~~l~~---~~~l~~~~~iViDEaH~~~~~----~~~~~~~~~~~~~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 84 --REHQGNEIVDVMCHATLTHRLMS---PNRVPNYNLFVMDEAHFTDPA----SIAARGYIATKVELGEAAAIFMTATPP 154 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHS---CC-CCCCSEEEESSTTCCSHH----HHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred --cCCCCCcEEEEEchHHHHHHhhc---cccccCCcEEEEECCccCCch----hhHHHHHHHHHhccCCccEEEEEcCCC
Confidence 00123345778888888776664 345889999999999984211 222222222222246899999999999
Q ss_pred hhHHHH
Q psy12977 205 EDVAKW 210 (226)
Q Consensus 205 ~~~~~~ 210 (226)
+++..+
T Consensus 155 ~~~~~~ 160 (459)
T 2z83_A 155 GTTDPF 160 (459)
T ss_dssp TCCCSS
T ss_pred cchhhh
Confidence 876444
No 67
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=1.1e-18 Score=158.22 Aligned_cols=146 Identities=23% Similarity=0.216 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhh-----ccccCCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 18 ISIIVTTLAVVSN-----SIFKHFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 18 ~~~~~~~l~~~~~-----~~~~~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
..+.|.-.+.+++ .++ +++++|.... .+++|+ +..++||+|||++|.+|++..... +.+++|++||+
T Consensus 58 ddlLpEAFAvvREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTr 130 (997)
T 2ipc_A 58 DELLPMAFALTRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVND 130 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCH
Confidence 4455665555554 666 8899997764 667777 999999999999999999644432 45799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHH-HHhHhcCC----CCCCCC---CccEEE
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL-VYLLQMDP----PALNLA---NVEWLI 163 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~~~~~~----~~~~~~---~~~~lV 163 (226)
+||.|.++.+..+...+++++..+.++.....+ ....++||+|+||+.+ ++++.... ....+. .+.++|
T Consensus 131 eLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r---~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 131 YLARRDAEWMGPVYRGLGLSVGVIQHASTPAER---RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH---HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH---HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEE
Confidence 999999999999999999999988877654332 2335689999999999 77776531 245677 899999
Q ss_pred Eccccccccc
Q psy12977 164 VDESDKLFEA 173 (226)
Q Consensus 164 iDE~h~l~~~ 173 (226)
+||+|.++..
T Consensus 208 IDEaDsmLiD 217 (997)
T 2ipc_A 208 IDEVDSILID 217 (997)
T ss_dssp ETTHHHHTTS
T ss_pred EechHHHHHh
Confidence 9999988744
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.78 E-value=2e-19 Score=160.81 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=93.9
Q ss_pred CCCCcccccc-cCC-----CCCeEEEECCCCchHhHHHHHHHHHHhcCC-----CCCCceEEEEcccHHHHHHHH-HHHH
Q psy12977 35 HFEPHFTITY-LSP-----LGRQIFACAPTGSGKTAAFLIPIIHSLRGP-----KNLGFRAVIVCPTRELAKQTY-NETV 102 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~-----~~~~~li~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~~iil~Pt~~L~~q~~-~~~~ 102 (226)
.+++.|..+. .+. .++++++++|||+|||++++..+...+... ...+++++|++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6788886663 222 346799999999999999765544444322 124679999999999999998 6665
Q ss_pred HHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcC--CCCCCCCCccEEEEcccccccccCccchHH
Q psy12977 103 RLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD--PPALNLANVEWLIVDESDKLFEAGVRGFRD 180 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~--~~~~~~~~~~~lViDE~h~l~~~~~~~~~~ 180 (226)
.+ +.....+.+. ....+.+|+|+||+++....... ...+....++++|+||||++.+.. ..
T Consensus 258 ~~----~~~~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----~~ 320 (590)
T 3h1t_A 258 PF----GDARHKIEGG---------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----NS 320 (590)
T ss_dssp TT----CSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------
T ss_pred hc----chhhhhhhcc---------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc----hH
Confidence 44 3333332221 23456799999999998765321 134556789999999999987641 24
Q ss_pred HHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCe
Q psy12977 181 QLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRV 219 (226)
Q Consensus 181 ~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~ 219 (226)
.+..+++.+ +..+++++|||+.+........++..++
T Consensus 321 ~~~~il~~~--~~~~~l~lTATP~~~~~~~~~~~f~~~~ 357 (590)
T 3h1t_A 321 NWREILEYF--EPAFQIGMTATPLREDNRDTYRYFGNPI 357 (590)
T ss_dssp -CHHHHHHS--TTSEEEEEESSCSCTTTHHHHHHSCSCS
T ss_pred HHHHHHHhC--CcceEEEeccccccccchhHHHHcCCce
Confidence 556666677 4578999999988654444445555544
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.78 E-value=1.9e-19 Score=162.55 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=105.4
Q ss_pred Hhhcccc-----CCCCccc-----ccc-cCC------CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 28 VSNSIFK-----HFEPHFT-----ITY-LSP------LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 28 ~~~~~~~-----~~~~~Q~-----~~~-~~~------~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
+...+|. .++++|+ .+. .++ +++|+++++|||||||++|+++++..+.. .+.+++|++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPT 279 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPT 279 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESS
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccH
Confidence 4455666 8899998 553 444 79999999999999999999999987643 35689999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc
Q psy12977 91 RELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL 170 (226)
Q Consensus 91 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l 170 (226)
++||.|+++.++.+ ++. ...+ ........+.-+-..+.+.+.+.+.. ...+.+++++|+||+|++
T Consensus 280 r~La~Q~~~~l~~~----~i~--~~~~------~l~~v~tp~~ll~~l~~~~l~~~l~~---~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----PVR--YLTP------AVQREHSGNEIVDVMCHATLTHRLMS---PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp HHHHHHHHHHTTTS----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHS---SSCCCCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHhcC----Cee--eecc------cccccCCHHHHHHHHHhhhhHHHHhc---ccccccceEEEEeCCccc
Confidence 99999999887644 222 1000 00000011112333344444433332 245889999999999998
Q ss_pred cccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 171 FEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 171 ~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
+. .+...+..+......+..|+++||||+++.+.++.
T Consensus 345 -~~---~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~ 381 (673)
T 2wv9_A 345 -DP---ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFP 381 (673)
T ss_dssp -CH---HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -Cc---cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhc
Confidence 22 23344444444443467999999999987755443
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.77 E-value=9.6e-19 Score=150.92 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=95.9
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.|+++++++|||||||.+|+.++++.+.. .+.+++|++||++|+.|+.+.+. +..+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~------ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS------ 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc------
Confidence 36899999999999999999998855532 25689999999999999988764 3344433332111
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
....+..+.+.|.+.+.+.+.. ...+.+++++|+||+|++ +. .+......+.....++.+|++++|||+++.+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~---~~~~~~l~~vViDEaH~~-~~---~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ---GVRVPNYNLYIMDEAHFL-DP---ASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH---TCCCCCCSEEEEESTTCC-SH---HHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred cCCCCceEEEEchHHHHHHHhc---CccccCCCEEEEeCCccC-Cc---cHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1112345677788888766554 344788999999999997 33 2344444444433346899999999999765
Q ss_pred HH
Q psy12977 208 AK 209 (226)
Q Consensus 208 ~~ 209 (226)
.+
T Consensus 139 ~~ 140 (431)
T 2v6i_A 139 EA 140 (431)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 71
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.75 E-value=2.9e-18 Score=157.26 Aligned_cols=186 Identities=18% Similarity=0.125 Sum_probs=121.8
Q ss_pred HHHHHHHHhhccccCCCCcccccc--cCCCCCeEEEECCCCchHhHHHHHHHHHHh-cCCCCCCceEEEEcccHHHHHHH
Q psy12977 21 IVTTLAVVSNSIFKHFEPHFTITY--LSPLGRQIFACAPTGSGKTAAFLIPIIHSL-RGPKNLGFRAVIVCPTRELAKQT 97 (226)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~Q~~~~--~~~~~~~~li~apTGsGKT~~~~~~~~~~~-~~~~~~~~~~iil~Pt~~L~~q~ 97 (226)
.+...+.++..+ ..+++.|+... .+..++++++.||||+|||.. +|++... ......+.++++++|+++++.|+
T Consensus 80 ~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~La~q~ 156 (773)
T 2xau_A 80 TPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVAAMSV 156 (773)
T ss_dssp CHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHHHHHH
Confidence 455666676666 67777775553 555678899999999999993 4443211 11111256799999999999999
Q ss_pred HHHHHHHh-hcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccc-ccccCc
Q psy12977 98 YNETVRLS-EGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDK-LFEAGV 175 (226)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~-l~~~~~ 175 (226)
.+.+.+.. ...+..+..... .......+.+|+++||+++.+.+.. ...+.+++++|+||+|. .++..
T Consensus 157 ~~~l~~~~~~~v~~~vG~~i~-------~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~R~ld~d- 225 (773)
T 2xau_A 157 AQRVAEEMDVKLGEEVGYSIR-------FENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHERTLATD- 225 (773)
T ss_dssp HHHHHHHTTCCBTTTEEEEET-------TEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGGCCHHHH-
T ss_pred HHHHHHHhCCchhheecceec-------cccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccccccchH-
Confidence 88664443 222222221111 1112235788999999999988775 24588999999999995 55541
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcCCCeEEecCCC
Q psy12977 176 RGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226 (226)
Q Consensus 176 ~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 226 (226)
.....+..+.... +..|++++|||++.+ .+.+++.++..+.+.+|
T Consensus 226 -~~~~~l~~l~~~~--~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 226 -ILMGLLKQVVKRR--PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp -HHHHHHHHHHHHC--TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCC
T ss_pred -HHHHHHHHHHHhC--CCceEEEEeccccHH---HHHHHhcCCCcccccCc
Confidence 2344455555444 578999999999643 34466776666766654
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.70 E-value=1.9e-17 Score=155.19 Aligned_cols=156 Identities=16% Similarity=0.070 Sum_probs=105.8
Q ss_pred cCCCCcccccc-cCC--------------CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHH
Q psy12977 34 KHFEPHFTITY-LSP--------------LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTY 98 (226)
Q Consensus 34 ~~~~~~Q~~~~-~~~--------------~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~ 98 (226)
..+.|.|..+. .+. .+++.+++++||||||+++ ++++..+.. .....++||++|+++|+.|+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-LDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-CTTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-cCCCceEEEEeCcHHHHHHHH
Confidence 35788886553 221 2478999999999999997 556665543 233469999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccch
Q psy12977 99 NETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGF 178 (226)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~ 178 (226)
+.+..+.... +.++.............+++|+|+||+++...+........+....++|+||||++...
T Consensus 348 ~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~----- 416 (1038)
T 2w00_A 348 KEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG----- 416 (1038)
T ss_dssp HHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH-----
T ss_pred HHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch-----
Confidence 9998876431 11111100100001134689999999999988765322224567889999999997543
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 179 RDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 179 ~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
.....+.+.+ ++.++++||||+..
T Consensus 417 -~~~~~I~~~~--p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 417 -EAQKNLKKKF--KRYYQFGFTGTPIF 440 (1038)
T ss_dssp -HHHHHHHHHC--SSEEEEEEESSCCC
T ss_pred -HHHHHHHHhC--CcccEEEEeCCccc
Confidence 2344556666 56899999999874
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=5.9e-16 Score=139.71 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=99.7
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhh
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (226)
..+++++++++||||||||... +..+... .+++|++|+++||.|+++.+++. +..+....|+.....
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a----l~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv- 217 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA----IQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV- 217 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH----HHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-
T ss_pred HhcCCCEEEEEcCCCCCHHHHH----HHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-
Confidence 4468899999999999999833 3333221 24599999999999999998776 667777766532211
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.-.....+++++|++.+. ....++++|+||+|.+.+. ++...+..++..++....+++++|||.+
T Consensus 218 --~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~---~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 218 --QPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDP---ARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp --STTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCT---TTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred --cCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCc---cchHHHHHHHHccCccceEEEeccchHH
Confidence 111123678888886431 2467799999999999877 6888888888888557889999999953
Q ss_pred hhHHHHHH
Q psy12977 205 EDVAKWCR 212 (226)
Q Consensus 205 ~~~~~~~~ 212 (226)
.+..+..
T Consensus 283 -~i~~l~~ 289 (677)
T 3rc3_A 283 -LVMELMY 289 (677)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3444443
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.64 E-value=1.2e-16 Score=141.88 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=95.4
Q ss_pred CCCCccccc-----ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 35 HFEPHFTIT-----YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 35 ~~~~~Q~~~-----~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
++.|.|... ..+..|+++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+.+..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 455666432 14567899999999999999999999987 256999999999999999999988877767
Q ss_pred CeEEEEecchhh-hhh-------------------------------h------------------CCCcCCCCCEEEEC
Q psy12977 110 LRAHVIGKIQQA-AEK-------------------------------F------------------GPRSAQKFDVLITT 139 (226)
Q Consensus 110 ~~~~~~~~~~~~-~~~-------------------------------~------------------~~~~~~~~~IiV~T 139 (226)
.++..+.|...- ... . .+.....++|+|+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 777766553210 000 0 01113468999999
Q ss_pred chHHHHhHhcCCCCCC-CCCccEEEEcccccccc
Q psy12977 140 PNKLVYLLQMDPPALN-LANVEWLIVDESDKLFE 172 (226)
Q Consensus 140 p~~l~~~~~~~~~~~~-~~~~~~lViDE~h~l~~ 172 (226)
++.+.+...+. ... .....++|+||||++.+
T Consensus 156 ~~~l~~~~~~~--~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYRE--FIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHT--TSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHH--hcCCCcCCeEEEEecccchHH
Confidence 99999876542 222 24678999999999988
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.59 E-value=1.4e-15 Score=134.62 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=84.9
Q ss_pred cccCCCCccccc-----ccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 32 IFKHFEPHFTIT-----YLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 32 ~~~~~~~~Q~~~-----~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
+| ++.|.|... ..+..++++++.+|||+|||++|++|++.. +.+++|++||++|++|+.+.+..+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 45 678888553 245678999999999999999999998653 458999999999999999887764
Q ss_pred cCCCeEEEEecchh---------h-------------------------------------hhhhCCCcCCCCCEEEECc
Q psy12977 107 GLGLRAHVIGKIQQ---------A-------------------------------------AEKFGPRSAQKFDVLITTP 140 (226)
Q Consensus 107 ~~~~~~~~~~~~~~---------~-------------------------------------~~~~~~~~~~~~~IiV~Tp 140 (226)
+.++....+... . .....+.....++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 333333222110 0 0000123345689999999
Q ss_pred hHHHHhHhcCC-C----CCCCCCccEEEEccccccc
Q psy12977 141 NKLVYLLQMDP-P----ALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 141 ~~l~~~~~~~~-~----~~~~~~~~~lViDE~h~l~ 171 (226)
+.+.+...... . ...+.+.+++|+||||++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99987553310 1 0124667899999999994
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.57 E-value=5.8e-15 Score=129.27 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=100.9
Q ss_pred CCCCcccccc-cC----CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 35 HFEPHFTITY-LS----PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 35 ~~~~~Q~~~~-~~----~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
.+.|.|.... ++ ..+++.++..+||+|||+.++..+...... ....+++|+|| .+|+.|+.++++++.. +
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--NELTPSLVICP-LSVLKNWEEELSKFAP--H 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--TCCSSEEEEEC-STTHHHHHHHHHHHCT--T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEcc-HHHHHHHHHHHHHHCC--C
Confidence 5677886553 22 457889999999999999875554444332 22458999999 5699999999999875 3
Q ss_pred CeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
.++....++.. .......+|+|+|++.+.+... +....++++|+||||++.+.. ......+..+
T Consensus 112 ~~v~~~~g~~~------~~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~-----~~~~~~l~~l 175 (500)
T 1z63_A 112 LRFAVFHEDRS------KIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQ-----TKIFKAVKEL 175 (500)
T ss_dssp SCEEECSSSTT------SCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTT-----SHHHHHHHTS
T ss_pred ceEEEEecCch------hccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHh-----HHHHHHHHhh
Confidence 44544444431 1223567899999999865433 223468999999999986542 1233444455
Q ss_pred CCCCceEEEEeeeCc
Q psy12977 190 SGPNLKRGMFSATHT 204 (226)
Q Consensus 190 ~~~~~q~v~~SAT~~ 204 (226)
+..+.+++|||+.
T Consensus 176 --~~~~~l~LTaTP~ 188 (500)
T 1z63_A 176 --KSKYRIALTGTPI 188 (500)
T ss_dssp --CEEEEEEECSSCS
T ss_pred --ccCcEEEEecCCC
Confidence 3567899999974
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.56 E-value=3.1e-15 Score=140.35 Aligned_cols=159 Identities=18% Similarity=0.088 Sum_probs=104.2
Q ss_pred CCCCcccccc-cC--CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCe
Q psy12977 35 HFEPHFTITY-LS--PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111 (226)
Q Consensus 35 ~~~~~Q~~~~-~~--~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~ 111 (226)
++.|.|..+. .+ ..+.+.++.++||+|||+.++..+...+... ...+++|++|+ +|+.|+.+.+.+.+ +..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 5667775553 22 2356899999999999999877776666543 23489999999 99999999887665 556
Q ss_pred EEEEecchhhhhhhC-CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccc--hHHHHHHHHHh
Q psy12977 112 AHVIGKIQQAAEKFG-PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRG--FRDQLAVIYAA 188 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~--~~~~i~~i~~~ 188 (226)
+..+.+......... .......+|+|+|++.+....... ..+...+++++|+||+|++....... ....+..+.
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~-- 303 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-EHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA-- 303 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-HHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH--
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-HHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh--
Confidence 555555443222221 233456799999999876432110 12335578999999999996543111 122333332
Q ss_pred cCCCCceEEEEeeeCc
Q psy12977 189 CSGPNLKRGMFSATHT 204 (226)
Q Consensus 189 ~~~~~~q~v~~SAT~~ 204 (226)
....+++++|||+-
T Consensus 304 --~~~~~~L~LTATPi 317 (968)
T 3dmq_A 304 --EHVPGVLLLTATPE 317 (968)
T ss_dssp --TTCSSEEESCSSCS
T ss_pred --hcCCcEEEEEcCCc
Confidence 34567999999974
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.40 E-value=4.7e-12 Score=114.21 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=102.1
Q ss_pred CCCCcccccc-cC---------CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCC---CCceEEEEcccHHHHHHHHHHH
Q psy12977 35 HFEPHFTITY-LS---------PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKN---LGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 35 ~~~~~Q~~~~-~~---------~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~---~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
.+.|.|.... ++ ..++..++..++|.|||+..+..+...+..... ...+++|++|+ +|+.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 5677775442 11 456789999999999999887666665543322 23469999997 8999999999
Q ss_pred HHHhhcCCCeEEEEecchhhhh-----hh--CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccC
Q psy12977 102 VRLSEGLGLRAHVIGKIQQAAE-----KF--GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAG 174 (226)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~ 174 (226)
.++... ......+.++..... .. ........+|+|+|++.+..... .+....++++|+||+|++-...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceecCChh
Confidence 999765 344444444322211 00 01112357899999998876533 3344578899999999986542
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 175 VRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 175 ~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
......+..+ .....+++|||+-
T Consensus 209 -----~~~~~al~~l--~~~~rl~LTgTPi 231 (644)
T 1z3i_X 209 -----NQTYLALNSM--NAQRRVLISGTPI 231 (644)
T ss_dssp -----HHHHHHHHHH--CCSEEEEECSSCS
T ss_pred -----hHHHHHHHhc--ccCcEEEEecCcc
Confidence 1222333344 3557899999963
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-12 Score=120.50 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=98.8
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
..+++.++..++|.|||+..+..+...+.. ......++|+|| .+++.|+.+.+.++.. +..+....|.........
T Consensus 253 ~~~~~~ILademGlGKT~~ai~~i~~l~~~-~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~ 328 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQTVAFISWLIFA-RRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIR 328 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHHHHHHHHHHHH-HSCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHH
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHHh-cCCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHH
Confidence 467899999999999999876555444321 112346899999 7799999999998875 455555555443222110
Q ss_pred -----------CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCce
Q psy12977 127 -----------PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLK 195 (226)
Q Consensus 127 -----------~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q 195 (226)
......++|+|+|++.+...... +....+++||+||||++-... ....+.+..+ ....
T Consensus 329 ~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----l~~~~w~~vIvDEaH~lkn~~-----s~~~~~l~~l--~~~~ 397 (800)
T 3mwy_W 329 EYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----LGSIKWQFMAVDEAHRLKNAE-----SSLYESLNSF--KVAN 397 (800)
T ss_dssp HHHSCSCC-----CCCCCSEEEECTTHHHHTHHH----HHTSEEEEEEETTGGGGCCSS-----SHHHHHHTTS--EEEE
T ss_pred HHHhhccccccccccccCCEEEecHHHHHhhHHH----HhcCCcceeehhhhhhhcCch-----hHHHHHHHHh--hhcc
Confidence 12345689999999999875432 112367899999999985432 1333344444 3556
Q ss_pred EEEEeeeCc----hhHHHHHH
Q psy12977 196 RGMFSATHT----EDVAKWCR 212 (226)
Q Consensus 196 ~v~~SAT~~----~~~~~~~~ 212 (226)
.+++|||+- .++..+++
T Consensus 398 rl~LTgTPiqN~l~el~~ll~ 418 (800)
T 3mwy_W 398 RMLITGTPLQNNIKELAALVN 418 (800)
T ss_dssp EEEECSCCCSSCSHHHHHHHH
T ss_pred EEEeeCCcCCCCHHHHHHHHH
Confidence 788999963 44554443
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.14 E-value=6e-11 Score=106.36 Aligned_cols=149 Identities=22% Similarity=0.140 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHhhcccc----CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 17 VISIIVTTLAVVSNSIFK----HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~----~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
+..+.|+..+.+++.... .+..+|.... .+..|+ +....||+|||+++.+|++-.... |..+.+++|+.
T Consensus 53 ldd~lpeafAvvREAa~R~lg~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~nd 126 (822)
T 3jux_A 53 ADEHLFEAFALVREAARRTLGMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVND 126 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccH
Confidence 345566666666655544 4455675554 444555 899999999999999998744332 56799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEecchh-----------------------------------------------hhhh
Q psy12977 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQ-----------------------------------------------AAEK 124 (226)
Q Consensus 92 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 124 (226)
+||.|-++++..+.+.+|.++.++..... ....
T Consensus 127 yLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 206 (822)
T 3jux_A 127 YLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKE 206 (822)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCB
T ss_pred HHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCH
Confidence 99999999999999999999988876210 0011
Q ss_pred hCCCcCCCCCEEEECchHHHHhHhcC-----CCCCCCCCccEEEEccccccc
Q psy12977 125 FGPRSAQKFDVLITTPNKLVYLLQMD-----PPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 125 ~~~~~~~~~~IiV~Tp~~l~~~~~~~-----~~~~~~~~~~~lViDE~h~l~ 171 (226)
..+.....|||+.+|.+-+--.+-++ ..........+.|+||+|.++
T Consensus 207 ~err~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 207 ITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CCHHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred HHHHHHhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 11223466899999988875433221 123335678899999999775
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.93 E-value=4.2e-09 Score=94.36 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=85.3
Q ss_pred CCcccccc-cCCCCCeEEEECCCCchHh--HHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE
Q psy12977 37 EPHFTITY-LSPLGRQIFACAPTGSGKT--AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAH 113 (226)
Q Consensus 37 ~~~Q~~~~-~~~~~~~~li~apTGsGKT--~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 113 (226)
++.|..+. ..+.++.++++|++||||| .+++++.+..... ..+.++++++||...+.++.+.+.......+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHH
Confidence 56675554 5567899999999999999 5566666655422 23568999999999999999888777665543211
Q ss_pred EEecchhhhhhhCCCcCCCCC-EEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCC
Q psy12977 114 VIGKIQQAAEKFGPRSAQKFD-VLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGP 192 (226)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~ 192 (226)
..... .. .....+ ++-.+|+.. . +.. .......++++|+||++.+ +. ..+..+++.+ +.
T Consensus 229 ~~~~~-------~~-~~~Tih~ll~~~~~~~-~-~~~--~~~~~l~~d~lIIDEAsml-~~------~~~~~Ll~~l-~~ 288 (608)
T 1w36_D 229 QKKRI-------PE-DASTLHRLLGAQPGSQ-R-LRH--HAGNPLHLDVLVVDEASMI-DL------PMMSRLIDAL-PD 288 (608)
T ss_dssp CCCSC-------SC-CCBTTTSCC---------------CTTSCCSCSEEEECSGGGC-BH------HHHHHHHHTC-CT
T ss_pred HHhcc-------ch-hhhhhHhhhccCCCch-H-HHh--ccCCCCCCCEEEEechhhC-CH------HHHHHHHHhC-CC
Confidence 10000 00 000111 111222211 0 111 1122337899999999944 32 3566677777 56
Q ss_pred CceEEEEeee
Q psy12977 193 NLKRGMFSAT 202 (226)
Q Consensus 193 ~~q~v~~SAT 202 (226)
..|++++.-.
T Consensus 289 ~~~liLvGD~ 298 (608)
T 1w36_D 289 HARVIFLGDR 298 (608)
T ss_dssp TCEEEEEECT
T ss_pred CCEEEEEcch
Confidence 7899998755
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.83 E-value=4.5e-09 Score=94.34 Aligned_cols=70 Identities=21% Similarity=0.188 Sum_probs=58.4
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK 117 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 117 (226)
.+.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.+..+....+.++..+.|
T Consensus 18 ~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 18 SLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred HHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 34578999999999999999999999987753 24699999999999999999999998766666555444
No 83
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.27 E-value=4.2e-06 Score=74.40 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=72.8
Q ss_pred CCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEE
Q psy12977 36 FEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHV 114 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 114 (226)
+++-|..+. ....++.+++.||+|+|||.... .++..+.. .+.++++++||...+.++.+.. +.....
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~-------~~~a~T 258 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES---LGLEVGLCAPTGKAARRLGEVT-------GRTAST 258 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH---TTCCEEEEESSHHHHHHHHHHH-------TSCEEE
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEecCcHHHHHHhHhhh-------cccHHH
Confidence 455565553 44567889999999999997543 33343332 2457999999999888776543 211111
Q ss_pred EecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCc
Q psy12977 115 IGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNL 194 (226)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~ 194 (226)
+. .+.. . .|+ .+.. ........+++|+||++.+.. ..+..+++.+ +...
T Consensus 259 ih-------~ll~-------~---~~~----~~~~--~~~~~~~~dvlIIDEasml~~-------~~~~~Ll~~~-~~~~ 307 (574)
T 3e1s_A 259 VH-------RLLG-------Y---GPQ----GFRH--NHLEPAPYDLLIVDEVSMMGD-------ALMLSLLAAV-PPGA 307 (574)
T ss_dssp HH-------HHTT-------E---ETT----EESC--SSSSCCSCSEEEECCGGGCCH-------HHHHHHHTTS-CTTC
T ss_pred HH-------HHHc-------C---Ccc----hhhh--hhcccccCCEEEEcCccCCCH-------HHHHHHHHhC-cCCC
Confidence 10 0000 0 000 0011 122344678999999996532 2555666666 4677
Q ss_pred eEEEEeee
Q psy12977 195 KRGMFSAT 202 (226)
Q Consensus 195 q~v~~SAT 202 (226)
+++++.-.
T Consensus 308 ~lilvGD~ 315 (574)
T 3e1s_A 308 RVLLVGDT 315 (574)
T ss_dssp EEEEEECT
T ss_pred EEEEEecc
Confidence 88876544
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.26 E-value=6.6e-07 Score=80.72 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=46.5
Q ss_pred CCCcccccc-cCCCCC-eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 36 FEPHFTITY-LSPLGR-QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~-~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
+++-|..+. ..+..+ -.+|+||+|||||......+.+.+.. +.++++++||..=+.++.+.+...
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 445554443 223334 57999999999998766655565553 458999999999999988877654
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.16 E-value=6.9e-06 Score=71.05 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred HHhhccccCCCCccccccc-C----CC-CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH
Q psy12977 27 VVSNSIFKHFEPHFTITYL-S----PL-GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 27 ~~~~~~~~~~~~~Q~~~~~-~----~~-~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
.++-+.|..+++-|..+.. + .+ ...+++.|++|||||.... .++..+.... ..++++++||..-+..+.+.
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG--ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT--CCCEEEEESSHHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC--CceEEEecCcHHHHHHHHhh
Confidence 4566788899998866642 1 11 2489999999999997543 3344433221 13689999999888766554
Q ss_pred H
Q psy12977 101 T 101 (226)
Q Consensus 101 ~ 101 (226)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 3
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.15 E-value=2.5e-06 Score=76.61 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 36 FEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
+++-|..+. ..+.+...+++||+|||||......+...+.. .+.++++++||..-+.++.+.+.+.
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 444554443 33345678999999999998754443333321 3458999999999999998887654
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.9e-06 Score=75.69 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=46.9
Q ss_pred CCCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 35 HFEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 35 ~~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
.+++-|..+. ..+.+...+|+||+|||||......+...+.. .+.++++++||..-+.++.+.+.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 3455565443 33455668999999999998754433333321 2458999999999999999988765
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.99 E-value=9.3e-06 Score=74.79 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=45.1
Q ss_pred CCCcccccc-cCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 36 FEPHFTITY-LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 36 ~~~~Q~~~~-~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
+++-|..+. ..+.+...+++||+|||||......+...... .+.++++++||..-+.++.+.+...
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 344454443 23345678999999999998654433333321 3458999999999999988877654
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.79 E-value=3.5e-05 Score=69.18 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=56.1
Q ss_pred ccCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 33 FKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 33 ~~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
+..+++.|..+.. ..+..++|.|++|||||.....-+...+........+++++++|+..+.++.+.+..+.
T Consensus 7 ~~~Ln~~Q~~av~-~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 7 LDSLNDKQREAVA-APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp HTTCCHHHHHHHT-CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHh-CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4677888876664 33678999999999999887666666665433344589999999999999999888775
No 90
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.73 E-value=0.00015 Score=59.48 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=24.0
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
.+++++||+|.+.... .....+..++......+.++++.|.
T Consensus 99 ~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp CSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999886521 2334444554443234556666443
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=0.00023 Score=53.14 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=28.2
Q ss_pred CccEEEEcccccc-cccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 158 NVEWLIVDESDKL-FEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 158 ~~~~lViDE~h~l-~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
+.+++|+||++.. .+. .....+..++......+..+++.|...+++
T Consensus 100 ~~~llilDE~~~~~~~~---~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSD---WQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSEEEEETCSSSCCCH---HHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCCEEEEeCCCCCcCCH---HHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 4579999999953 222 244455566655533456777766666554
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=0.00011 Score=53.60 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=16.6
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.+.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999753
No 93
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.42 E-value=0.0011 Score=50.25 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..-.++++||+|.+... ....+..++... ..+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~----~~~~l~~~l~~~-~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD----AQAALRRTMEMY-SKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHT-TTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH----HHHHHHHHHHhc-CCCCeEEEEeCC
Confidence 45679999999988654 455666666654 455666665443
No 94
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.39 E-value=0.0015 Score=52.13 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
.+++++.||+|+|||....
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3689999999999997643
No 95
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.39 E-value=0.002 Score=50.14 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
..|.-.++.|++|+|||...+-.+..... .+.+++++.|...- . .. .++....+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~----~g~kVli~~~~~d~--r-~~--~~i~srlG~~--------------- 65 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY----ADVKYLVFKPKIDT--R-SI--RNIQSRTGTS--------------- 65 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEEECCCG--G-GC--SSCCCCCCCS---------------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh----cCCEEEEEEeccCc--h-HH--HHHHHhcCCC---------------
Confidence 34566889999999999876544444333 24578888776521 0 00 0111111110
Q ss_pred CCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 127 PRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
...+-+.+...+.+.+.. ...-.+.++||+||++.+... ....+..+. +.+.+++++.-
T Consensus 66 -----~~~~~~~~~~~i~~~i~~---~~~~~~~dvViIDEaQ~l~~~----~ve~l~~L~----~~gi~Vil~Gl 124 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMS---NSFNDETKVIGIDEVQFFDDR----ICEVANILA----ENGFVVIISGL 124 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHS---TTSCTTCCEEEECSGGGSCTH----HHHHHHHHH----HTTCEEEEECC
T ss_pred -----ccccccCCHHHHHHHHHH---HhhCCCCCEEEEecCccCcHH----HHHHHHHHH----hCCCeEEEEec
Confidence 012335566667766654 222345799999999965322 333443333 23566666543
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00086 Score=50.56 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=27.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
.|+-.++.||.|+|||...+-.+...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~----g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG----KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT----TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeecc
Confidence 35667899999999998764433333322 44788888884
No 97
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.34 E-value=0.00076 Score=57.91 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
+.+++++||+|.+.+.. .....+..++..+...+.++++.|...|.+
T Consensus 194 ~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp TCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred CCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 45699999999987531 244455555555434566777755444443
No 98
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.31 E-value=0.00077 Score=57.69 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
..+-.++.|++|+|||....- .+. . .+.++++||++++..+.+.+... +..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~----~~~-~----~~~lVlTpT~~aa~~l~~kl~~~----~~~---------------- 210 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILS----RVN-F----EEDLILVPGRQAAEMIRRRANAS----GII---------------- 210 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHH----HCC-T----TTCEEEESCHHHHHHHHHHHTTT----SCC----------------
T ss_pred cccEEEEEcCCCCCHHHHHHH----Hhc-c----CCeEEEeCCHHHHHHHHHHhhhc----Ccc----------------
Confidence 335568999999999986432 222 1 25699999999998887766322 100
Q ss_pred CcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccc
Q psy12977 128 RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL 170 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l 170 (226)
.....-|.|-++++- +. ........+.+|+||+-.+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~--~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NY--GKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TT--TSSCCCCCSEEEEETGGGS
T ss_pred ---ccccceEEEeHHhhc--CC--CCCCCCcCCEEEEeCcccC
Confidence 001122666665432 21 2222335789999999844
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0034 Score=51.49 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=19.5
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
.+.++++.||||+|||...-. ++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 457899999999999986544 33444
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.0012 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.4
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 101
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.13 E-value=0.002 Score=48.91 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.0
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
.|+-.++.||.|+|||...+-.+..... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEecc
Confidence 4566789999999999876544444332 256889998884
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.11 E-value=0.0005 Score=62.73 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred cccCCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 32 IFKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 32 ~~~~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
.+..+++-|..+... .+.+++|.|+.|||||.....-+...+........++++++.|+..|.++.+.+..+..
T Consensus 8 ~l~~Ln~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 8 LLAHLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp HHTTSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred HHhhCCHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 456789988776543 35789999999999999876666666653333345899999999999999988887743
No 103
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.10 E-value=0.018 Score=43.98 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=24.2
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
..-.++|+||+|.+... ....+...+... +....+++.|.
T Consensus 125 ~~~~vlviDe~~~l~~~----~~~~l~~~l~~~-~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGGGSCHH----HHHHHHHHHHSC-CTTEEEEEEES
T ss_pred CCceEEEEECcccccHH----HHHHHHHHHhcC-CCceEEEEEeC
Confidence 34569999999987543 445555555443 34555555543
No 104
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.0011 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.1
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
+++++.||+|+|||.... .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 789999999999997543 344444
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.96 E-value=0.0011 Score=55.94 Aligned_cols=145 Identities=9% Similarity=-0.027 Sum_probs=79.5
Q ss_pred CCCCccccccc-CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCC--e
Q psy12977 35 HFEPHFTITYL-SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGL--R 111 (226)
Q Consensus 35 ~~~~~Q~~~~~-~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~--~ 111 (226)
.+.|.|..... +...+-+++..+-+.|||......++..+.. ..+..++++.|+++-|..+++.++.+.+.... +
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 45666644431 1134668999999999998766555543322 23558999999999999998888887664431 1
Q ss_pred EEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCC
Q psy12977 112 AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG 191 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~ 191 (226)
-...... . .. -...+++.|.+.+.+ -+-+. =.+.+++|+||+|.+.+. +..+..+...+.. .
T Consensus 241 ~~~~~~~-~--~~--I~f~nGs~i~~lsa~--~~slr-------G~~~~~viiDE~a~~~~~--~el~~al~~~ls~--~ 302 (385)
T 2o0j_A 241 PGIVEWN-K--GS--IELDNGSSIGAYASS--PDAVR-------GNSFAMIYIEDCAFIPNF--HDSWLAIQPVISS--G 302 (385)
T ss_dssp CCEEEEC-S--SE--EEETTSCEEEEEECS--HHHHH-------TSCCSEEEEESGGGSTTH--HHHHHHHHHHHHS--T
T ss_pred hhhccCC-c--cE--EEeCCCCEEEEEECC--CCCcc-------CCCCCEEEechhhhcCCC--HHHHHHHHHHhhc--C
Confidence 0000000 0 00 011234445444321 11111 124579999999987541 1344444433322 1
Q ss_pred CCceEEEE
Q psy12977 192 PNLKRGMF 199 (226)
Q Consensus 192 ~~~q~v~~ 199 (226)
++.++++.
T Consensus 303 ~~~kiiii 310 (385)
T 2o0j_A 303 RRSKIIIT 310 (385)
T ss_dssp TCCEEEEE
T ss_pred CCCcEEEE
Confidence 34555544
No 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.0012 Score=51.46 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
..|.-+++.||+|+|||......+...... +.+++++... .-..++.+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcc-CCHHHHHHHHH
Confidence 456788999999999998654444444432 3356776533 33455555444
No 107
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.91 E-value=0.0036 Score=51.05 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=26.7
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+.+++++||+|.+... .....+..+++.. +.++++++.+..
T Consensus 105 ~~~vliiDEi~~l~~~---~~~~~L~~~le~~-~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA---ESQRHLRSFMEAY-SSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGH---HHHHHHHHHHHHH-GGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcH---HHHHHHHHHHHhC-CCCcEEEEEeCC
Confidence 6679999999988622 2455666666654 345677764433
No 108
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.90 E-value=0.0044 Score=51.55 Aligned_cols=18 Identities=28% Similarity=0.139 Sum_probs=15.5
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999764
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.88 E-value=0.0059 Score=49.30 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
.+.++++.||+|+|||....
T Consensus 66 ~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45689999999999997643
No 110
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0042 Score=51.42 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=24.0
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
-.++|+||+|.+.+.........+..........+..+++.|.
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 5599999999987542124555555555443233444455443
No 111
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.0045 Score=44.47 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=17.2
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45688999999999999764
No 112
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.005 Score=52.04 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 378999999999999854
No 113
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.77 E-value=0.0095 Score=48.70 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999754
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.76 E-value=0.0041 Score=55.39 Aligned_cols=72 Identities=14% Similarity=-0.003 Sum_probs=50.7
Q ss_pred CCCccccccc-CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCC
Q psy12977 36 FEPHFTITYL-SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109 (226)
Q Consensus 36 ~~~~Q~~~~~-~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~ 109 (226)
++|.|..... +...+..++..+-|+|||......++..+... .+.+++++.|+++.+..+++.++.+.+..+
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 4566644431 12346789999999999987654444333322 245899999999999999998888876654
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.75 E-value=0.0012 Score=59.56 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=52.3
Q ss_pred CCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 35 HFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 35 ~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
.+++-|..+... .+.+++|.|+.|||||.....-+...+........++++++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~-~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC-CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 356777665532 36789999999999998766555555543222345899999999999999998887754
No 116
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.0033 Score=51.72 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
...+++++||+|.+... ....+...++.. +....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~----~~~~Ll~~le~~-~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD----AQSALRRTMETY-SGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH----HHHHHHHHHHHT-TTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH----HHHHHHHHHHhc-CCCceEEEEeC
Confidence 35579999999988654 445666666665 34556666443
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.75 E-value=0.0071 Score=43.31 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=27.0
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
..+++||+|.+... ....+...++...+.+..+++.|...+++
T Consensus 77 ~~l~lDei~~l~~~----~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~ 119 (143)
T 3co5_A 77 GVLYVGDIAQYSRN----IQTGITFIIGKAERCRVRVIASCSYAAGS 119 (143)
T ss_dssp SEEEEEECTTCCHH----HHHHHHHHHHHHTTTTCEEEEEEEECTTT
T ss_pred CeEEEeChHHCCHH----HHHHHHHHHHhCCCCCEEEEEecCCCHHH
Confidence 47899999988654 34445555554434456777766655443
No 118
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.012 Score=48.46 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
.+.+++|+||+|.+ +. .....+..+++.. ++++.+++.|...
T Consensus 133 ~~~~vlilDE~~~L-~~---~~~~~L~~~le~~-~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TK---DAQAALRRTMEKY-SKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CH---HHHHHHHHHHHHS-TTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CH---HHHHHHHHHHHhh-cCCCEEEEEeCCH
Confidence 46779999999984 43 3566777777776 4456666655443
No 119
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.72 E-value=0.006 Score=49.41 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.+-.++|+||+|.+... ....+...++.. +..+.+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~----~~~~L~~~le~~-~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD----AQQALRRTMEMF-SSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHT-TTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH----HHHHHHHHHHhc-CCCCeEEEEe
Confidence 35679999999988654 455666666654 4556666644
No 120
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.70 E-value=0.018 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+.++++.||+|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34578999999999999754
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.70 E-value=0.013 Score=48.20 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=25.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
..+.+++|+||+|.+... ....+.+.++.- ++++-+++.|.
T Consensus 106 ~~~~kvviIdead~l~~~----a~naLLk~lEep-~~~~~~Il~t~ 146 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDA----AANALLKTLEEP-PAETWFFLATR 146 (334)
T ss_dssp TSSCEEEEESCGGGBCHH----HHHHHHHHHTSC-CTTEEEEEEES
T ss_pred cCCcEEEEECchhhcCHH----HHHHHHHHhcCC-CCCeEEEEEeC
Confidence 356789999999998654 334444555432 34455555443
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.69 E-value=0.058 Score=39.43 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
.+++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.68 E-value=0.021 Score=48.84 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc-ccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC-PTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
+..+++.|++|+|||.....-+..... .+.+++++. ++..-+ ..+.+..+....+..+......
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~----~G~kVllv~~D~~r~~--a~eqL~~~~~~~gv~~~~~~~~--------- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK----RGYKVGLVAADVYRPA--AYDQLLQLGNQIGVQVYGEPNN--------- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH----TTCCEEEEEECCSCHH--HHHHHHHHHHTTTCCEECCTTC---------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH----cCCeEEEEecCccchh--HHHHHHHHHHhcCCceeecccc---------
Confidence 456889999999999765433322222 133555544 332211 1234444544444432211110
Q ss_pred CcCCCCCEEEECchHHH-HhHhcCCCCCCCCCccEEEEccccccc--ccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 128 RSAQKFDVLITTPNKLV-YLLQMDPPALNLANVEWLIVDESDKLF--EAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~-~~~~~~~~~~~~~~~~~lViDE~h~l~--~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
..|..+. ..+.. ....+.+++|+|++-+.. .. ......+..+.+.. .+..-++.++|+..
T Consensus 162 ----------~dp~~i~~~al~~----a~~~~~DvvIIDTaGr~~~~~d--~~lm~el~~i~~~~-~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 ----------QNPIEIAKKGVDI----FVKNKMDIIIVDTAGRHGYGEE--TKLLEEMKEMYDVL-KPDDVILVIDASIG 224 (433)
T ss_dssp ----------SCHHHHHHHHHHH----TTTTTCSEEEEEECCCSSSCCT--THHHHHHHHHHHHH-CCSEEEEEEEGGGG
T ss_pred ----------CCHHHHHHHHHHH----HHhcCCCEEEEECCCCccccCC--HHHHHHHHHHHHhh-CCcceEEEEeCccc
Confidence 1233332 22222 112467899999997654 22 15777788877777 45566677888876
Q ss_pred hhHHHHHHHhc
Q psy12977 205 EDVAKWCRRKL 215 (226)
Q Consensus 205 ~~~~~~~~~~~ 215 (226)
.+..+.++.+-
T Consensus 225 q~a~~~a~~f~ 235 (433)
T 3kl4_A 225 QKAYDLASRFH 235 (433)
T ss_dssp GGGHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 66555555443
No 124
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.67 E-value=0.0079 Score=46.35 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
.|+-.++.|+-|+|||...+-.+..... .+.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEeccC
Confidence 3455678999999999876555444433 2568999998864
No 125
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.66 E-value=0.00071 Score=55.30 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=16.4
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0052 Score=50.94 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.++++++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.65 E-value=0.0049 Score=51.26 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=22.0
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC 88 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~ 88 (226)
.+++.||+|+|||...- .+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~--~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT--TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC--CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc--CeeEEEEe
Confidence 79999999999998643 3444443211 23455553
No 128
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.63 E-value=0.019 Score=47.40 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=24.8
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+-.++|+||+|.+... ....+...++.. +..+.+++.|
T Consensus 117 ~~~~~vliiDe~~~l~~~----~~~~Ll~~le~~-~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH----HHHHHHHHHHSC-CSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH----HHHHHHHHHhcC-CCceEEEEEe
Confidence 345679999999988654 445555555543 3445555543
No 129
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.012 Score=44.64 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
.++=.++.||.|+|||...+-.+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccc
Confidence 46667899999999997655555444432 4588999887
No 130
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.54 E-value=0.0093 Score=49.58 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.6
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999764
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.52 E-value=0.0039 Score=60.16 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCCcccccccCCCCCeEEEECCCCchHhHHHHHHHHHHhcCCC--CCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 35 HFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPK--NLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 35 ~~~~~Q~~~~~~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~--~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
.+|+-|..+... .+++++|.|+.|||||...+--++..+.... ....+++++++|++.+..+.+.+....
T Consensus 10 ~~t~eQ~~~i~~-~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS-TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC-CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 467777666543 3789999999999999987766777765422 234589999999999999998887754
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.03 Score=44.53 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
...+.+++.||+|+|||...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 34578999999999999754
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.08 Score=38.68 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 134
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.0083 Score=49.16 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 478999999999999754
No 135
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.46 E-value=0.03 Score=49.42 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=38.3
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc-hhHHHHHHHhcCCCe
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT-EDVAKWCRRKLKRRV 219 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~-~~~~~~~~~~~~~p~ 219 (226)
-++|+||+|.+...........+.++.+.-......+++.|..+. +.+...++..+...+
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI 405 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI 405 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEE
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEE
Confidence 389999999887543334666777887777666777777666554 233444444444333
No 136
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.43 E-value=0.022 Score=43.90 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=27.1
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
.|.-.++.||-|+|||...+-.+ .+... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~---~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIY---AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHH---TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHH---cCCceEEEEeccC
Confidence 45667899999999997654444 33322 2457899988764
No 137
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.40 E-value=0.0096 Score=50.01 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+++++.||+|+|||...
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.035 Score=45.13 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..+.+++|+||+|.+... ....+.+.++.- ++.+.+++.+ +-|.
T Consensus 80 ~~~~kvviIdead~lt~~----a~naLLk~LEep-~~~t~fIl~t-~~~~ 123 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ----AANAFLKALEEP-PEYAVIVLNT-RRWH 123 (305)
T ss_dssp SSSSEEEEETTGGGBCHH----HHHHTHHHHHSC-CTTEEEEEEE-SCGG
T ss_pred cCCceEEEeccHHHhCHH----HHHHHHHHHhCC-CCCeEEEEEE-CChH
Confidence 346789999999998765 345566666553 4556666654 4343
No 139
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.28 E-value=0.028 Score=42.94 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=17.5
Q ss_pred CCCCeEEEECCCCchHhHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~ 68 (226)
..|.-+.+.||+|+|||.....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHH
Confidence 4567889999999999975433
No 140
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.013 Score=50.38 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 388999999999999754
No 141
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.26 E-value=0.019 Score=46.95 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=15.1
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.++++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.25 E-value=0.11 Score=44.51 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc-c-cHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC-P-TRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~-P-t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
..-+++.|++|+|||....--+ ..+.. .+.+++++. . .+.-+ .++++.+....+..+......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~-------- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE-------- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC--------
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC--------
Confidence 3567899999999998654333 33332 133555544 3 33322 344555555555543221111
Q ss_pred CCcCCCCCEEEECchHHH-HhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCch
Q psy12977 127 PRSAQKFDVLITTPNKLV-YLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTE 205 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~~l~-~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~ 205 (226)
..|..+. +.+.. ......+++|+|.+=..... ......+..+.... .+..-++.+.|+-..
T Consensus 165 -----------~dp~~i~~~al~~----a~~~~~DvVIIDTaGrl~~d--~~lm~el~~i~~~~-~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 165 -----------KDAIKLAKEGVDY----FKSKGVDIIIVDTAGRHKED--KALIEEMKQISNVI-HPHEVILVIDGTIGQ 226 (443)
T ss_dssp -----------CCHHHHHHHHHHH----HHHTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHH-CCSEEEEEEEGGGGG
T ss_pred -----------CCHHHHHHHHHHH----HHhCCCCEEEEECCCcccch--HHHHHHHHHHHHhh-cCceEEEEEeCCCch
Confidence 1232222 11111 00124678888887543221 13455555555555 345556667777665
Q ss_pred hHHHHHHHhc
Q psy12977 206 DVAKWCRRKL 215 (226)
Q Consensus 206 ~~~~~~~~~~ 215 (226)
+..+.++.+.
T Consensus 227 ~a~~~a~~f~ 236 (443)
T 3dm5_A 227 QAYNQALAFK 236 (443)
T ss_dssp GHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555554443
No 143
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.015 Score=47.73 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
...+++|+||+|.+... ....+..+++.. +..+.+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~----~~~~L~~~le~~-~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA----AQNALRRVIERY-TKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH----HHHHHHHHHHHT-TTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH----HHHHHHHHHhcC-CCCeEEEEEe
Confidence 35789999999988654 455666777665 4556666543
No 144
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.00 E-value=0.024 Score=44.21 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
.|+-.++.|+-|+|||...+-.+..... .+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~----~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT----TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH----CCCeEEEEeecCC
Confidence 4666788999999999876555444433 3568899988764
No 145
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.82 E-value=0.017 Score=52.11 Aligned_cols=65 Identities=25% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCCCcccccc-----cCCCC-CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 35 HFEPHFTITY-----LSPLG-RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 35 ~~~~~Q~~~~-----~~~~~-~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
.|++.|..+. .+..| +..++.+.||||||+.+.-. +.... ..++|++|+..+|.|+++.++.+.+
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~-~~~~~------~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKV-IEALG------RPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHT------CCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHH-HHHhC------CCEEEEecCHHHHHHHHHHHHHHCC
Confidence 6667774442 12233 35678999999999876433 33332 2489999999999999999999964
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.018 Score=46.43 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=25.4
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
+-.++|+||+|.+... ....+...++.. ++.+.+++.|.
T Consensus 107 ~~~viiiDe~~~l~~~----~~~~L~~~le~~-~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG----AQQALRRTMELY-SNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH----HHHTTHHHHHHT-TTTEEEEEEES
T ss_pred CceEEEEECcccCCHH----HHHHHHHHHhcc-CCCceEEEEeC
Confidence 3679999999988654 344455555554 45566666543
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.015 Score=50.78 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
..-.++++||+|.+.... ++....+..+++. .+..+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~-~~~l~~L~~~l~~---~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD-RGGVGQLAQFCRK---TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTS-TTHHHHHHHHHHH---CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhh-HHHHHHHHHHHHh---cCCCEEEEEcCC
Confidence 345699999999987642 2344555555554 355677777764
No 148
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.65 E-value=0.023 Score=43.09 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH-HHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE-LAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG 126 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
....+++..++|.|||.+++-.++..+.. |.+++++.-.+. ....-.+.+..+ ++.+.....+ +
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~g------f- 91 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATG------F- 91 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTT------C-
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccc------c-
Confidence 34679999999999999887777777753 557888743331 000001122222 3332222210 0
Q ss_pred CCcCCCCCEEEECch------HHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 127 PRSAQKFDVLITTPN------KLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 127 ~~~~~~~~IiV~Tp~------~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
...++. .....+......+.-.++++||+||+-.....+.- -...+...+... ++..-+|+.+
T Consensus 92 ---------~~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-~~~ev~~~l~~R-p~~~~vIlTG 160 (196)
T 1g5t_A 92 ---------TWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL-PLEEVISALNAR-PGHQTVIITG 160 (196)
T ss_dssp ---------CCCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-CHHHHHHHHHTS-CTTCEEEEEC
T ss_pred ---------ccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC-CHHHHHHHHHhC-cCCCEEEEEC
Confidence 011111 11111111112233467899999999755444322 333455555554 4566777777
Q ss_pred eeCchhHHHHH
Q psy12977 201 ATHTEDVAKWC 211 (226)
Q Consensus 201 AT~~~~~~~~~ 211 (226)
--.|+++.+.+
T Consensus 161 r~ap~~l~e~A 171 (196)
T 1g5t_A 161 RGCHRDILDLA 171 (196)
T ss_dssp SSCCHHHHHHC
T ss_pred CCCcHHHHHhC
Confidence 77788777665
No 149
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.64 E-value=0.031 Score=47.84 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999754
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.59 E-value=0.022 Score=48.93 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.+++++||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999997543
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.58 E-value=0.019 Score=46.29 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=14.1
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.24 E-value=0.19 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=19.3
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPI 70 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~ 70 (226)
+..|.-+++.||+|+|||......+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3567889999999999997654433
No 153
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.14 E-value=0.096 Score=45.36 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
..+....+.+-+|+||++...- +.... +..+++++|+...|.|+++.++.+.+
T Consensus 12 ~~~~~~~l~g~~gs~ka~~~a~-l~~~~------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 12 KAGEQRLLGELTGAACATLVAE-IAERH------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp STTCEEEEECCCTTHHHHHHHH-HHHHS------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCCeEEEeCCCchHHHHHHHH-HHHHh------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567789999999999986432 22222 22589999999999999999998864
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.14 E-value=0.19 Score=43.07 Aligned_cols=40 Identities=20% Similarity=0.043 Sum_probs=26.0
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEc
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVC 88 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~ 88 (226)
+..|.-+++.|++|+|||...+..+....... +..++|+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s 239 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFS 239 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 34567789999999999976554444443211 33566665
No 155
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.06 E-value=0.068 Score=48.19 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=39.1
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~ 106 (226)
+...+.+.||+|||+...- ++.... ..++|++|+..+|.|.++.++.+..
T Consensus 33 ~~~~l~g~~gs~k~~~~a~-~~~~~~------~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 33 KHQTLLGATGTGKTFTVSN-LIKEVN------KPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SEEEEEECTTSCHHHHHHH-HHHHHC------CCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CcEEEECcCCcHHHHHHHH-HHHHhC------CCEEEEECCHHHHHHHHHHHHHHcC
Confidence 3567889999999986543 333332 1489999999999999999999965
No 156
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.95 E-value=0.46 Score=38.52 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETV 102 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~ 102 (226)
..|.-+++.|+||+|||...+-.+.+...+ +..++|++-- .-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHH
Confidence 446778999999999997655444454442 2467776532 33344444433
No 157
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.87 E-value=0.028 Score=46.96 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
.|+-+++.+|+|+|||...+..+...... +.+++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 35678999999999997655444444332 3367777644
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.85 E-value=0.0024 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=17.9
Q ss_pred CCCCeEEEECCCCchHhHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~ 68 (226)
..|.-+.+.||+|+|||.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 4677899999999999976443
No 159
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.072 Score=41.00 Aligned_cols=43 Identities=12% Similarity=-0.077 Sum_probs=25.9
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCP 89 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~P 89 (226)
..|.-+.+.||+|+|||.....-+...+... ...+..++++.-
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4567889999999999986544443323211 001335666653
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.80 E-value=0.17 Score=43.87 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
...+.+++.||+|+|||...
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34578999999999999854
No 161
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.78 E-value=0.38 Score=35.22 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=70.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-+..+.+.+... +..+..+.++.....+. .....+..+|+|+|.. ....+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~--------~~~Gldi~ 98 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL--------FGRGMDIE 98 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC--------CSTTCCGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc--------hhcCcchh
Confidence 348999999999999999888765 66777777664333221 1122467789999953 22678888
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHhcC
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLK 216 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~ 216 (226)
+++++|.-+...-.. .+.+.+-+.-+.- .+..-+++++..-.....+.+.+.+.
T Consensus 99 ~~~~Vi~~d~p~~~~----~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 99 RVNIAFNYDMPEDSD----TYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp GCSEEEESSCCSSHH----HHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred hCCEEEEECCCCCHH----HHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 999988755442111 3455555544433 23334444433322233344444443
No 162
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.67 E-value=0.031 Score=56.06 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTREL 93 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L 93 (226)
.++++++.+|+|+|||......+.+...+ +.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEccccc
Confidence 47899999999999998765555554442 5578888765443
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.0025 Score=49.68 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVR 103 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~ 103 (226)
|.-+++.|+||+|||...+-.+.+...+. +..++|+.- .+-.+++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~-E~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTL-EERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEES-SSCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecc-cCCHHHHHHHHHH
Confidence 56789999999999975544344433221 224566543 2334454444433
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.42 E-value=0.52 Score=41.88 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.7
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
+..++.+++.||+|+|||..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 345789999999999999754
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.42 E-value=0.02 Score=47.56 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
.|+-+++.||+|+|||...+..+...... +.+++|+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 35678999999999998655544444432 3467777643
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.20 E-value=0.042 Score=45.91 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=15.8
Q ss_pred CCCeEEE--ECCCCchHhHHHH
Q psy12977 48 LGRQIFA--CAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li--~apTGsGKT~~~~ 67 (226)
.+..+++ .||+|+|||....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHH
Confidence 3457888 9999999997643
No 167
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.18 E-value=0.063 Score=48.25 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=29.8
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~ 99 (226)
...++.|+-|.|||.+.-+.+ ..+.. +++|.+|+.+-+...++
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~-a~~~~------~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLI-SRIAG------RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHH-HHSSS------CEEEECSSCCSCHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHH-HHHHh------CcEEECCCHHHHHHHHH
Confidence 457999999999996654443 33321 36999999887665444
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.06 E-value=0.061 Score=46.00 Aligned_cols=40 Identities=23% Similarity=0.071 Sum_probs=25.8
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
..|.-+++.|++|+|||...+-.+.+..... +..++|+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE---GVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 3456789999999999976554444444321 335666653
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.04 E-value=0.042 Score=50.55 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
-+.+++.||+|+|||...
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 378999999999999854
No 170
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.01 E-value=0.098 Score=42.27 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
.++.+.+.||+|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467788999999999976543
No 171
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.99 E-value=0.083 Score=42.99 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=32.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCC--------CCCC----ceEEEEcccHHH-HHHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGP--------KNLG----FRAVIVCPTREL-AKQTYNETVRL 104 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~--------~~~~----~~~iil~Pt~~L-~~q~~~~~~~~ 104 (226)
.|.-+++.||+|+|||...+..+.+..... ...+ .+++|+.-...+ .+++.+.++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 356789999999999976544444322110 0112 578887654432 45555444443
No 172
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.83 E-value=0.14 Score=42.18 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=27.2
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTR 91 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~ 91 (226)
.|.-+++.||+|+|||......+....... ...+.+++|+....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456789999999999986544444432211 01244778876544
No 173
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.78 E-value=0.41 Score=43.68 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.7
Q ss_pred eEEEECCCCchHhHHHH
Q psy12977 51 QIFACAPTGSGKTAAFL 67 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~ 67 (226)
++++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998643
No 174
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.75 E-value=1.5 Score=35.39 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
.++-+.+.+|+|+|||.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHH
Confidence 345678999999999976443
No 175
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.61 E-value=0.15 Score=46.91 Aligned_cols=55 Identities=16% Similarity=0.052 Sum_probs=27.8
Q ss_pred ccEEEEcccccccccCc-------cchHHHHHHHHHhc--CCCCceEEEEeee-CchhHHHHHHH
Q psy12977 159 VEWLIVDESDKLFEAGV-------RGFRDQLAVIYAAC--SGPNLKRGMFSAT-HTEDVAKWCRR 213 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~-------~~~~~~i~~i~~~~--~~~~~q~v~~SAT-~~~~~~~~~~~ 213 (226)
-..+.+||+|.+..... ......+..++..+ ......++++.|| .|+.+...+.+
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllR 635 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHS
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcC
Confidence 35899999998864311 01112334444333 1345567888888 44445444544
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.39 E-value=0.054 Score=45.03 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
|.-+++.+|+|+|||...+..+..... .+.+++|+..-.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~----~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK----MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEeccc
Confidence 456889999999999754433333222 134677776543
No 177
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.07 E-value=2.5 Score=33.98 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=25.4
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
-++|+||+|.+.+.....+...+..+.... ++..+++.+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL--KRIKFIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC--TTEEEEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC--CCeEEEEEcC
Confidence 489999999886521225666776666554 3556666443
No 178
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.00 E-value=0.74 Score=33.17 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-++.+.+.+... +..+..+.++.....+. .....+..+|+|+|.. .. ..+++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~---~Gld~~ 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AA---RGIDIE 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GT---TTCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hh---cCCchh
Confidence 347999999999999999888765 67777777764333221 1122456789999942 12 678888
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 9999887554
No 179
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.94 E-value=1.9 Score=31.27 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=52.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-+..+.+.+... +..+..+.++.....+. .....+..+|+|+|.. ....+++.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~--------~~~Gid~~ 101 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV--------CARGIDVK 101 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS--------CCTTTCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc--------hhcCCCcc
Confidence 458999999999999988877664 67777777764433221 1122466789999953 22678899
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
.++++|.-+.
T Consensus 102 ~~~~Vi~~d~ 111 (175)
T 2rb4_A 102 QVTIVVNFDL 111 (175)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 9999986443
No 180
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.54 E-value=0.39 Score=36.38 Aligned_cols=22 Identities=23% Similarity=0.036 Sum_probs=17.3
Q ss_pred CCCCeEEEECCCCchHhHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~ 68 (226)
..|.-+.+.||+|+|||.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4567789999999999975433
No 181
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.42 E-value=0.17 Score=41.45 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCC
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGP 127 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (226)
.| -+++.+|+|+|||...+-.+...... ..+.+++|+..-.++... .++++ +... +
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~--g~g~~vlyId~E~s~~~~---ra~~l----Gvd~----------d---- 83 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQ--YPDAVCLFYDSEFGITPA---YLRSM----GVDP----------E---- 83 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHH--CTTCEEEEEESSCCCCHH---HHHHT----TCCG----------G----
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEeccchhhHH---HHHHh----CCCH----------H----
Confidence 45 68999999999998665555444432 124588888766555321 23333 3210 0
Q ss_pred CcCCCCCEEEECchHHHHh----HhcCCCCCCCCCccEEEEccccccc
Q psy12977 128 RSAQKFDVLITTPNKLVYL----LQMDPPALNLANVEWLIVDESDKLF 171 (226)
Q Consensus 128 ~~~~~~~IiV~Tp~~l~~~----~~~~~~~~~~~~~~~lViDE~h~l~ 171 (226)
++++..|....+. .... ..+.-.+++++|+|-+..+.
T Consensus 84 ------~llv~~~~~~E~~~l~i~~~l-~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------RVIHTPVQSLEQLRIDMVNQL-DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GEEEEECSBHHHHHHHHHHHH-HTCCTTCCEEEEEECSTTCB
T ss_pred ------HeEEEcCCCHHHHHHHHHHHH-HHhhccCceEEEEecccccc
Confidence 2445544444333 2110 01223468999999999886
No 182
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.31 E-value=0.62 Score=34.78 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=52.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.++.. +..+..+.++.....+. .....+..+|+|+|.. .. ..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-----~~---~Gldi~ 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-----AS---KGLDFP 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-----HH---TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-----hh---cCCCcc
Confidence 347999999999999999888766 67777777764332221 1122456789999932 22 577888
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-+.
T Consensus 122 ~v~~VI~~d~ 131 (191)
T 2p6n_A 122 AIQHVINYDM 131 (191)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 9998887543
No 183
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.21 E-value=3.4 Score=33.02 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
.++.+.+.+++|+|||....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 55677788999999997543
No 184
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.12 E-value=0.11 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
..++++.||+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4579999999999997543
No 185
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.93 E-value=1.1 Score=38.67 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
+..|.-+++.|++|+|||...+-.+.+.... .+.+++|+.- ..-..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEES-SSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEec-cCCHHHHHHHH
Confidence 3456778999999999998655555554432 1335666653 22334544443
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.80 E-value=3.5 Score=33.59 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=30.6
Q ss_pred ccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHHHh
Q psy12977 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRK 214 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~~~ 214 (226)
.+.+++|.+-..-.. ......+..+.+.+ .+...++.+.++-..++.+.++.+
T Consensus 212 ~d~vliDtaG~~~~~--~~l~~eL~~i~ral-~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETN--RNLMDEMKKIARVT-KPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTT--TCHHHHHHHHHHHH-CCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHH--HHHHHHHHHHHHHh-cCCCCEEEEecHHHHHHHHHHHHH
Confidence 456677776643221 14556666665555 455666677777666665555554
No 187
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.63 E-value=1.6 Score=39.26 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=55.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC---CCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG---PRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++|+.-++.+.+.+.+. +..+...+++.....+.. ....+..+|+|+|.- ....+++.
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~--------l~~GlDip 512 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL--------LREGLDIP 512 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC--------CSTTCCCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch--------hhCCcccC
Confidence 459999999999999988887775 666666665532222111 112356789999953 22688899
Q ss_pred CccEEEEcccccc
Q psy12977 158 NVEWLIVDESDKL 170 (226)
Q Consensus 158 ~~~~lViDE~h~l 170 (226)
+++++|+-|++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999999865
No 188
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.22 E-value=0.22 Score=49.47 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=58.0
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
|+-+.+.+|.|||||...+..+.+..+. +..++++.+-.++.... ++.+ |+.. +
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~----g~~~~~i~~e~~~~~~~---~~~~----Gv~~----------~----- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY---ARKL----GVDI----------D----- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHH---HHHT----TCCG----------G-----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEEecCCCCCHHH---HHHc----CCCH----------H-----
Confidence 5779999999999998776655555443 55789988877776554 2233 4331 1
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccccccccc
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~ 173 (226)
++++.-|+.-.+.+..-...+.-..++.+|+|.+..+...
T Consensus 1485 -----~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1485 -----NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp -----GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCT
T ss_pred -----HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcc
Confidence 1566666443222211001122346789999999988754
No 189
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.14 Score=43.76 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||..+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 378999999999999754
No 190
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.10 E-value=0.79 Score=42.46 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.||||+|||...-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999997643
No 191
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.02 E-value=0.92 Score=37.12 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=73.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+++.+++. +..+..+.++....++. .....+..+|+|+|.- ....+++.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~--------~~~Gidip 310 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV--------LARGIDIP 310 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG--------GSSSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh--------hhcCCCcc
Confidence 458999999999999998888765 66677776654332221 1122456789999953 12688899
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCC--CCceEEEEeeeCchhHHHHHHHhcCCCe
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSG--PNLKRGMFSATHTEDVAKWCRRKLKRRV 219 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~--~~~q~v~~SAT~~~~~~~~~~~~~~~p~ 219 (226)
+++++|..+...+.... .+....++++-+.... ...-+++++..-.....+.+++++.+..
T Consensus 311 ~~~~Vi~~~~p~~~~~~-~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQ-ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE 373 (395)
T ss_dssp TEEEEEESSCCBCTTSS-BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCC
T ss_pred cCCEEEEcCCCCCCcCC-CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCce
Confidence 99999987665432110 0223333333333211 1223334333333445566666665433
No 192
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.81 E-value=0.26 Score=41.71 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
...++++.|+||+|||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4578999999999999875
No 193
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.58 E-value=7.6 Score=34.82 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=65.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhC---CCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG---PRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++|+.-++.+.+.+.+. +..+...+++.....+.. ....+..+|+|||.. ....+++.
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~--------l~~GlDip 506 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL--------LREGLDIP 506 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC--------CCTTCCCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh--------hhcCccCC
Confidence 459999999999999988887765 666666665532222111 122466789999953 22688899
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEE
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMF 199 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~ 199 (226)
+++++|+=+++...-.. +....+.++-+.-.......+.+
T Consensus 507 ~v~lVI~~d~d~~G~p~--s~~~~iQr~GRagR~~~G~~i~~ 546 (664)
T 1c4o_A 507 EVSLVAILDADKEGFLR--SERSLIQTIGRAARNARGEVWLY 546 (664)
T ss_dssp TEEEEEETTTTSCSGGG--SHHHHHHHHGGGTTSTTCEEEEE
T ss_pred CCCEEEEeCCcccCCCC--CHHHHHHHHCccCcCCCCEEEEE
Confidence 99999999987542211 23344444444332233344444
No 194
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.58 E-value=1 Score=36.92 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=53.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.+.+. +..+..+.++....++. .....+..+|+|+|.. ....+++.
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--------~~~Gidi~ 317 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL--------FGRGMDIE 317 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC--------CSSCBCCT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh--------hhcCCCcc
Confidence 458999999999999998888765 66677776654332221 1123456789999952 22688899
Q ss_pred CccEEEEcccc
Q psy12977 158 NVEWLIVDESD 168 (226)
Q Consensus 158 ~~~~lViDE~h 168 (226)
+++++|..+..
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999976654
No 195
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.31 E-value=0.76 Score=33.16 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.++.. +..+..+.++.....+. .....+..+|+|+|.. .. ..+++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~---~G~d~~ 97 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LA---RGIDVQ 97 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GT---TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hh---cCCCcc
Confidence 458999999999999998888765 66777777664333221 1122466789999943 12 577888
Q ss_pred CccEEEEcccc
Q psy12977 158 NVEWLIVDESD 168 (226)
Q Consensus 158 ~~~~lViDE~h 168 (226)
+++++|.-+..
T Consensus 98 ~~~~Vi~~~~p 108 (165)
T 1fuk_A 98 QVSLVINYDLP 108 (165)
T ss_dssp SCSEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99998876543
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.18 Score=43.01 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.8
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||..+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 378999999999999864
No 197
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.19 E-value=0.21 Score=38.21 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=18.5
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
.+.+++.||+|+|||..+ ..++..+
T Consensus 58 kn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred ccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 456999999999999754 4455544
No 198
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.14 E-value=0.2 Score=42.68 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 378999999999999754
No 199
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.85 E-value=0.19 Score=39.07 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+.+++.||+|+|||...
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3477999999999999754
No 200
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.80 E-value=0.2 Score=37.00 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|+-+.+.||+|+|||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35678899999999999753
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.69 E-value=0.2 Score=40.33 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.9
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++.+++.||+|+|||...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 34688999999999999754
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.67 E-value=0.18 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.4
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.++.+++.||+|+|||...
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999754
No 203
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.54 E-value=0.21 Score=36.40 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.4
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
++.+++.|++|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999764
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.20 E-value=0.42 Score=48.19 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=27.6
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
.|.-+++.||+|+|||...+-.+.+.... +.+++|+.--.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~----G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcCC
Confidence 45778999999999998665555555432 34677776433
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.09 E-value=0.83 Score=33.81 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=52.4
Q ss_pred CchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCE
Q psy12977 59 GSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDV 135 (226)
Q Consensus 59 GsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~I 135 (226)
.+.|-. .+.-++.... .+.++||.++++.-+..+.+.++.. +..+..+.++.....+. .....+..+|
T Consensus 29 ~~~K~~-~L~~ll~~~~----~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATG----KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHHH-HHHHHHHHC-----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHHH-HHHHHHHhcC----CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 455654 3344444321 3558999999999999998888764 66777666654322211 1112356789
Q ss_pred EEECchHHHHhHhcCCCCCCCCCccEEEEccc
Q psy12977 136 LITTPNKLVYLLQMDPPALNLANVEWLIVDES 167 (226)
Q Consensus 136 iV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~ 167 (226)
+|+|.. + . ..+++.+++++|.-+.
T Consensus 100 LvaT~~-~----~---~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 100 LVATAV-A----A---RGLDISNVKHVINFDL 123 (185)
T ss_dssp EEEEC--------------CCCSBSEEEESSC
T ss_pred EEEcCh-h----h---cCCCcccCCEEEEeCC
Confidence 999942 1 1 5677888988887443
No 206
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.98 E-value=0.6 Score=40.67 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=35.5
Q ss_pred EEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc-hhHHHHHHHhcCCCeEE
Q psy12977 161 WLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT-EDVAKWCRRKLKRRVQI 221 (226)
Q Consensus 161 ~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~-~~~~~~~~~~~~~p~~i 221 (226)
++|+||+|.+++.........+.++.+.-......+++.|..++ +.+..+++..+...+..
T Consensus 300 vlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 300 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 79999999887642223444555555554334666776655555 33555565655544443
No 207
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.91 E-value=0.21 Score=41.28 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+++++.||||+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.89 E-value=0.21 Score=39.78 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+++++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.83 E-value=0.19 Score=41.38 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=18.7
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
++.+++.||+|+|||.... .+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHh
Confidence 4789999999999998643 334444
No 210
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=88.65 E-value=1.1 Score=43.21 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=41.6
Q ss_pred CeEEEECCCCchHhHHHHHHHHHHhcCC--------CCCCceEEEEcccHHHHHHHHHHHHHHh
Q psy12977 50 RQIFACAPTGSGKTAAFLIPIIHSLRGP--------KNLGFRAVIVCPTRELAKQTYNETVRLS 105 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~~iil~Pt~~L~~q~~~~~~~~~ 105 (226)
...+|.|+-|||||....--++..+... ...-.++++++=|++=|..+.+.+.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 4459999999999998766666666431 1233589999999998888877766653
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.5 Score=40.20 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 378999999999999854
No 212
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.28 E-value=0.48 Score=39.50 Aligned_cols=47 Identities=17% Similarity=-0.048 Sum_probs=33.0
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
.-.++|+||+|.+++.........+..+.+...+.+.-+++.|.++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 35699999999998632224666777777777556777777777654
No 213
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.21 E-value=0.26 Score=36.96 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=14.7
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999753
No 214
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.08 E-value=1.8 Score=32.71 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=52.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.+... +..+..++++.....+. .....+..+|+|+|.- ....+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~--------~~~Gidi~ 98 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV--------AARGLDIP 98 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT--------TTCSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh--------hhcCCCCc
Confidence 348999999999999998888775 67777777764333221 1223466789999943 22678888
Q ss_pred CccEEEEcc
Q psy12977 158 NVEWLIVDE 166 (226)
Q Consensus 158 ~~~~lViDE 166 (226)
+++++|.=+
T Consensus 99 ~v~~Vi~~~ 107 (212)
T 3eaq_A 99 QVDLVVHYR 107 (212)
T ss_dssp CBSEEEESS
T ss_pred cCcEEEECC
Confidence 999888533
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.95 E-value=0.33 Score=35.52 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=17.2
Q ss_pred CCCCeEEEECCCCchHhHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~ 67 (226)
..++.+++.|++|+|||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998643
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.83 E-value=0.27 Score=38.31 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.3
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999754
No 217
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.82 E-value=7.5 Score=33.68 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=55.5
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.++||.++++.-++.+++.+++.... +..+..++++.....+. .....+..+|+|+|.- + . ..+++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~--~GiDi 408 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-A--RGMDF 408 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-T--SSCCC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h-h--cCCCc
Confidence 3568999999999999999988877542 56666666654332221 1122466789999963 1 2 68889
Q ss_pred CCccEEEEcccc
Q psy12977 157 ANVEWLIVDESD 168 (226)
Q Consensus 157 ~~~~~lViDE~h 168 (226)
.+++++|.-..-
T Consensus 409 p~v~~VI~~~~p 420 (563)
T 3i5x_A 409 PNVHEVLQIGVP 420 (563)
T ss_dssp TTCCEEEEESCC
T ss_pred ccCCEEEEECCC
Confidence 999998866543
No 218
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.78 E-value=0.66 Score=45.19 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+++|+||+=.-+|. .....+...++..
T Consensus 1233 lr~~~ILiLDEaTSaLD~---~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDT---ESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTS---HHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCH---HHHHHHHHHHHHH
Confidence 456679999999988887 5777888777776
No 219
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.75 E-value=0.23 Score=39.84 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=14.8
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999754
No 220
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.74 E-value=0.3 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
.+.+++.|++|+|||....
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999997643
No 221
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.73 E-value=0.14 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.4
Q ss_pred cCCCCCeEEEECCCCchHhHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.++++.||+|+|||...
T Consensus 37 al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 37 AALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHTCEEEEECCSSSSHHHHH
T ss_pred HHhcCCeeEeecCchHHHHHHH
Confidence 4456789999999999999753
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.72 E-value=0.31 Score=36.50 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++.+++.|++|+|||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 45678999999999999764
No 223
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.64 E-value=0.26 Score=36.38 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|..+.+.||+|+|||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45678899999999999753
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.56 E-value=0.36 Score=38.16 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=17.0
Q ss_pred CCCCCeEEEECCCCchHhHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~ 65 (226)
...|..+.+.||||+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677889999999999975
No 225
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.45 E-value=0.63 Score=39.44 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=19.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLR 75 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~ 75 (226)
.+..+++.||||||||... ..++..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL-~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL-YAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHH-HHHHhhcC
Confidence 4566899999999999753 44455553
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.45 E-value=0.32 Score=36.75 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677899999999999753
No 227
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.43 E-value=0.34 Score=36.10 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|.-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35678899999999999753
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.42 E-value=0.27 Score=39.93 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=28.4
Q ss_pred HHHHHHHhhccccCCCCccccc----ccCCCCCeEEEECCCCchHhHHH
Q psy12977 22 VTTLAVVSNSIFKHFEPHFTIT----YLSPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~Q~~~----~~~~~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.++...+..+-..+... ..+..++++++.||+|+|||...
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3455556666555554433111 23345789999999999999754
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.42 E-value=0.54 Score=35.32 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
..|.-+++.||+|+|||.....-+. . .+.+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~----~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---L----SGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---H----HCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---H----cCCcEEEEEC
Confidence 4567889999999999976443333 1 1346666653
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.08 E-value=0.37 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=16.9
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++-+++.||+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 46778999999999999753
No 231
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.81 E-value=2 Score=35.31 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=52.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-++.+.+.+.+. +..+..+.++....++. .....+..+|+|+|.- +. ..+++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~---~Gidip 333 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CA---RGIDVE 333 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GT---SSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----cc---cCCCcc
Confidence 348999999999999999888776 66667776664332221 1122456789999953 12 688899
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-+.
T Consensus 334 ~~~~Vi~~~~ 343 (412)
T 3fht_A 334 QVSVVINFDL 343 (412)
T ss_dssp TEEEEEESSC
T ss_pred CCCEEEEECC
Confidence 9999885443
No 232
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.77 E-value=0.33 Score=40.19 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
...++++.||+|+|||...
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4578999999999999754
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.75 E-value=0.36 Score=35.45 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=15.3
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.64 E-value=0.42 Score=36.12 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=17.2
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|+-+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 56788999999999999753
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.63 E-value=0.42 Score=40.87 Aligned_cols=26 Identities=42% Similarity=0.701 Sum_probs=18.9
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
.++++++.||+|+|||.... .+...+
T Consensus 62 ~~~~iLl~GppGtGKT~la~-ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL-AIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH-HHHHHh
Confidence 34789999999999997653 333433
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.60 E-value=0.3 Score=42.58 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
..|.++++.||||||||... ..++..+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 46788999999999999753 3344433
No 237
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.60 E-value=1.9 Score=36.61 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=46.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+.+++|+||+++-++.+++.+++. +.++..+++. ...........+..+|+|+|.-. ...+++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v~--------e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDIA--------EMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESSST--------TCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECChh--------heeeccC-ce
Confidence 458999999999999999888775 6677777763 22222233345678999999631 1678888 88
Q ss_pred EEEE
Q psy12977 161 WLIV 164 (226)
Q Consensus 161 ~lVi 164 (226)
++|.
T Consensus 243 ~VI~ 246 (440)
T 1yks_A 243 RVLD 246 (440)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8773
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.56 E-value=0.34 Score=36.39 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=15.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.55 E-value=0.32 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.52 E-value=0.35 Score=38.99 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+.++++.||||+|||...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34578999999999999754
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.50 E-value=0.84 Score=37.06 Aligned_cols=56 Identities=18% Similarity=0.039 Sum_probs=31.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcccHHH-HHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCPTREL-AKQTYNETVR 103 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~Pt~~L-~~q~~~~~~~ 103 (226)
.|.-+++.||+|+|||...+..+....... ...+.+++|+.-...+ .+++.+.++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 457789999999999976544444432210 0113477887654332 3444444333
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.47 E-value=0.37 Score=34.89 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=15.3
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+.+.||+|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999753
No 243
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.44 E-value=3 Score=34.46 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.++||.+++++-++.+.+.+++. +..+..++++....++. .....+..+|+|+|.- +. ..+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~---~Gidi 342 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----AA---RGLDI 342 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----HH---TTSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----hh---cCCCc
Confidence 4568999999999999998888765 66777777664433221 1122456789999952 22 57888
Q ss_pred CCccEEEEcc
Q psy12977 157 ANVEWLIVDE 166 (226)
Q Consensus 157 ~~~~~lViDE 166 (226)
.+++++|.-+
T Consensus 343 p~v~~Vi~~~ 352 (417)
T 2i4i_A 343 SNVKHVINFD 352 (417)
T ss_dssp CCEEEEEESS
T ss_pred ccCCEEEEEc
Confidence 8999888643
No 244
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.44 E-value=9.4 Score=33.34 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=55.6
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.++||.++++.-++.+++.+++.... +..+..++++.....+. .....+..+|+|+|.. + . ..+++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~-~--~GiDi 357 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-A--RGMDF 357 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-T--SSCCC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h-h--cCCCc
Confidence 3568999999999999999988877542 56666666654332221 1122466789999963 1 2 68889
Q ss_pred CCccEEEEcccc
Q psy12977 157 ANVEWLIVDESD 168 (226)
Q Consensus 157 ~~~~~lViDE~h 168 (226)
.+++++|.-..-
T Consensus 358 p~v~~VI~~~~p 369 (579)
T 3sqw_A 358 PNVHEVLQIGVP 369 (579)
T ss_dssp TTCCEEEEESCC
T ss_pred ccCCEEEEcCCC
Confidence 999999876654
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.36 E-value=0.36 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+-+++.||||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45789999999999754
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.35 E-value=0.36 Score=36.67 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.5
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++-+++.||||+|||...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHH
T ss_pred ECCEEEEEECCCCCCHHHHH
Confidence 45677999999999999643
No 247
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.33 E-value=0.42 Score=35.24 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.29 E-value=0.41 Score=35.66 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999753
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.87 E-value=0.96 Score=38.62 Aligned_cols=39 Identities=15% Similarity=-0.031 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcc
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCP 89 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~P 89 (226)
..|.-+++.|+||+|||...+-.+.+.... +.+++|++-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 345678999999999998665555555543 446777753
No 250
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.83 E-value=0.8 Score=40.63 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchh
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTED 206 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~ 206 (226)
+.+-+++++||+-.-+|. .....+...++.+. . ...+++.+.-.+.
T Consensus 507 ~~~p~illlDEpts~LD~---~~~~~i~~~l~~~~-~-~~t~i~itH~l~~ 552 (598)
T 3qf4_B 507 LANPKILILDEATSNVDT---KTEKSIQAAMWKLM-E-GKTSIIIAHRLNT 552 (598)
T ss_dssp HTCCSEEEECCCCTTCCH---HHHHHHHHHHHHHH-T-TSEEEEESCCTTH
T ss_pred hcCCCEEEEECCccCCCH---HHHHHHHHHHHHHc-C-CCEEEEEecCHHH
Confidence 456789999999988887 56667777766662 2 3455554443333
No 251
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.82 E-value=0.43 Score=39.38 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
..+.+++.||+|+|||...-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999997643
No 252
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.70 E-value=0.41 Score=39.40 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.6
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999754
No 253
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.60 E-value=3.1 Score=34.35 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=51.6
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCC
Q psy12977 82 FRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLAN 158 (226)
Q Consensus 82 ~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~ 158 (226)
.++||.++++.-++.+.+.+.+. +..+..++++....++. .....+..+|+|+|.. + ...+++.+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidi~~ 344 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W---ARGLDVPQ 344 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G---SSSCCCTT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h---hCcCCccc
Confidence 48999999999999998888765 66677776664332221 1122356789999963 1 26888999
Q ss_pred ccEEEEccc
Q psy12977 159 VEWLIVDES 167 (226)
Q Consensus 159 ~~~lViDE~ 167 (226)
++++|.-+.
T Consensus 345 v~~Vi~~~~ 353 (410)
T 2j0s_A 345 VSLIINYDL 353 (410)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEECC
Confidence 999886443
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.56 E-value=0.86 Score=37.72 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEccc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPT 90 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt 90 (226)
.|+-+++.+++|+|||...+..+...... +.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 45778999999999998665544444432 3367777653
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.49 E-value=0.4 Score=35.01 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.2
Q ss_pred CCCCeEEEECCCCchHhHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~ 67 (226)
..|.-+.+.||+|+|||...-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456778899999999997654
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.47 E-value=0.2 Score=39.28 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.6
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997643
No 257
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.47 E-value=0.39 Score=38.36 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.4
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.||+|+|||...-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 579999999999997643
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.45 E-value=0.45 Score=35.16 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=14.1
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.35 E-value=0.4 Score=34.78 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.1
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-+++.|++|||||...
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35789999999999754
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.30 E-value=0.44 Score=34.60 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.9
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.+.|++|+|||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999754
No 261
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.10 E-value=1.3 Score=39.14 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+.+-+++++||+-.-+|. .....+...++.+. . ...+++.+.
T Consensus 496 ~~~p~illlDEpts~LD~---~~~~~i~~~l~~~~-~-~~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDT---ESERAIQAALDELQ-K-NKTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCH---HHHHHHHHHHHHHc-C-CCEEEEEec
Confidence 566789999999988887 57777777777763 2 344555444
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.83 E-value=0.53 Score=35.17 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.+.||+|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999754
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.80 E-value=0.45 Score=34.23 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.8
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 264
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.77 E-value=0.42 Score=39.59 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.8
Q ss_pred cCCCCCeEEEECCCCchHhHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~ 65 (226)
.+..|..+.+.||||+|||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345688999999999999974
No 265
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.74 E-value=0.6 Score=38.87 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.1
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
...|..+++.||||+|||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999753
No 266
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.60 E-value=0.36 Score=38.79 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.5
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
..++++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999754
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.57 E-value=0.52 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999754
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.39 E-value=0.56 Score=35.93 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.6
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
...|+-+.+.||+|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 356788999999999999753
No 269
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.35 E-value=0.31 Score=39.61 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.4
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
..++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999754
No 270
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.24 E-value=4.8 Score=35.61 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=54.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.++||.|+++.-++++++.++.. +..+....++....++. .....+..+|+|+|.. ....++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a--------~~~GID~ 333 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA--------FGMGIDK 333 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT--------SCTTCCC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech--------hhcCCCc
Confidence 4568999999999999999988765 67777777664333221 1223567789999953 2267888
Q ss_pred CCccEEEEccc
Q psy12977 157 ANVEWLIVDES 167 (226)
Q Consensus 157 ~~~~~lViDE~ 167 (226)
.+++++|.-..
T Consensus 334 p~V~~VI~~~~ 344 (591)
T 2v1x_A 334 PDVRFVIHHSM 344 (591)
T ss_dssp SCEEEEEESSC
T ss_pred ccccEEEEeCC
Confidence 99999885443
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.24 E-value=1.2 Score=34.34 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=18.7
Q ss_pred eEEEECCCCchHhHHHHHHHHHHhc
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSLR 75 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~~ 75 (226)
++++.+++|+|||...+--+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 6899999999999876554444443
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.22 E-value=0.57 Score=35.70 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.6
Q ss_pred cCCCCCeEEEECCCCchHhHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~ 66 (226)
.+..|+-+.+.||+|+|||...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHH
Confidence 4456788999999999999753
No 273
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.13 E-value=0.6 Score=38.66 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
.+..+++.||||||||... ..++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 4557899999999999753 3334443
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.13 E-value=1.3 Score=35.34 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+++.||+|+|||...
T Consensus 32 ~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3466899999999999754
No 275
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.08 E-value=0.47 Score=37.12 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=13.6
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+++.||+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4689999999999754
No 276
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=83.89 E-value=0.73 Score=44.23 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=28.8
Q ss_pred EEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHH
Q psy12977 53 FACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92 (226)
Q Consensus 53 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~ 92 (226)
+|.|..|||||...+.-+...+... ..+.++++++|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc
Confidence 6889999999998776666665432 23468899988763
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.71 E-value=0.45 Score=34.87 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|..+++.|++|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457899999999999754
No 278
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.65 E-value=2.3 Score=41.50 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++-+++++||+=.-+|. .....+...++.+
T Consensus 570 ~~~~~IliLDE~tSaLD~---~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDA---ESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCT---TTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCH---HHHHHHHHHHHHH
Confidence 667789999999988887 4556666666555
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.65 E-value=0.53 Score=38.29 Aligned_cols=17 Identities=53% Similarity=0.704 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+-+++.||||+|||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 45789999999999754
No 280
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.63 E-value=0.8 Score=34.56 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=27.8
Q ss_pred ccEEEEcccccccccC--ccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHHH
Q psy12977 159 VEWLIVDESDKLFEAG--VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCR 212 (226)
Q Consensus 159 ~~~lViDE~h~l~~~~--~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~~ 212 (226)
-.++||||||.+.... ...... +...+..-.....++++++.. ++.+...++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~r-ll~~l~~~r~~~~~iil~tq~-~~~l~~~lr 141 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPE-NVQWLNTHRHQGIDIFVLTQG-PKLLDQNLR 141 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCH-HHHGGGGTTTTTCEEEEEESC-GGGBCHHHH
T ss_pred ceEEEEEChhhhccCccccchhHH-HHHHHHhcCcCCeEEEEECCC-HHHHhHHHH
Confidence 5599999999985321 111111 222222233456688887776 444444443
No 281
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.62 E-value=2.7 Score=36.48 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-++++++.++.. +..+...+++.....+. .....+..+|+|+|.. ....++..
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a--------~~~GiD~p 303 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA--------FGMGINKP 303 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT--------SCTTTCCT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech--------hhCCCCcc
Confidence 457999999999999999988775 66777777664433221 1223466899999963 22678889
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-..
T Consensus 304 ~v~~VI~~~~ 313 (523)
T 1oyw_A 304 NVRFVVHFDI 313 (523)
T ss_dssp TCCEEEESSC
T ss_pred CccEEEEECC
Confidence 9999886443
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.55 E-value=19 Score=30.37 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCchHhHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~ 68 (226)
.++.+.+.+++|+|||.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455677889999999976543
No 283
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.54 E-value=3.7 Score=33.66 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=52.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.+++. +..+..+.++.....+. .....+..+|+|+|.. ....+++.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~--------~~~Gidip 325 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL--------LTRGIDIQ 325 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC--------SSSSCCCT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc--------cccCCCcc
Confidence 458999999999999999888776 66676666654332221 1122456789999952 22678899
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-+.
T Consensus 326 ~~~~Vi~~~~ 335 (400)
T 1s2m_A 326 AVNVVINFDF 335 (400)
T ss_dssp TEEEEEESSC
T ss_pred CCCEEEEeCC
Confidence 9998886443
No 284
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.51 E-value=2.6 Score=33.90 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=51.5
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.+++|.+++++-++.+.+.+++. +..+..+.++.....+. .....+..+|+|+|.. +. ..+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~---~Gid~ 304 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MS---RGIDV 304 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HH---HHCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hh---cCCCc
Confidence 3458999999999999998888765 66677776654332221 1122456789999952 12 35667
Q ss_pred CCccEEEEccc
Q psy12977 157 ANVEWLIVDES 167 (226)
Q Consensus 157 ~~~~~lViDE~ 167 (226)
.+++++|.-+.
T Consensus 305 ~~~~~Vi~~~~ 315 (367)
T 1hv8_A 305 NDLNCVINYHL 315 (367)
T ss_dssp SCCSEEEESSC
T ss_pred ccCCEEEEecC
Confidence 88888887544
No 285
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.39 E-value=0.28 Score=43.85 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=29.0
Q ss_pred CCCCCEEEECchHHHHhHhcCC--C-CCCCCCccEEEEccccccccc
Q psy12977 130 AQKFDVLITTPNKLVYLLQMDP--P-ALNLANVEWLIVDESDKLFEA 173 (226)
Q Consensus 130 ~~~~~IiV~Tp~~l~~~~~~~~--~-~~~~~~~~~lViDE~h~l~~~ 173 (226)
...+||||+..+.+++...+.. + .....+-..+|+||||++.+.
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDI 219 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHH
Confidence 5678999999987765442210 0 011234569999999999764
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.15 E-value=0.57 Score=34.38 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356889999999999764
No 287
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.13 E-value=0.64 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999754
No 288
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.12 E-value=0.48 Score=41.97 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=28.8
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+.+-+++++||+-.-+|. .....+...++.+. .+ ..+++.+.
T Consensus 495 ~~~p~illlDEpts~LD~---~~~~~i~~~l~~~~-~~-~tvi~itH 536 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDP---ITEKRILDGLKRYT-KG-CTTFIITQ 536 (587)
T ss_dssp HTCCSEEEEESCCTTSCH---HHHHHHHHHHHHHS-TT-CEEEEEES
T ss_pred HcCCCEEEEECCcccCCH---HHHHHHHHHHHHhC-CC-CEEEEEec
Confidence 456789999999988887 57777777777662 23 44444333
No 289
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.10 E-value=1.6 Score=35.85 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNET 101 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~ 101 (226)
..|.-+++.|++|+|||...+-.+..... .+..++|++. ..-..|+...+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES-SSCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC-CCCHHHHHHHH
Confidence 44566899999999999865544444443 2446677653 22334444433
No 290
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.93 E-value=0.54 Score=38.45 Aligned_cols=19 Identities=42% Similarity=0.872 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHH
Q psy12977 47 PLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~ 65 (226)
..|+.+.+.||||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4578999999999999974
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.82 E-value=0.57 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.78 E-value=0.64 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|..+.+.||+|+|||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45677899999999999754
No 293
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.69 E-value=23 Score=30.63 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~ 68 (226)
+.+.+.+++|+|||....-
T Consensus 102 ~vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.61 E-value=0.76 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=16.5
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
+..|+-+.+.||+|+|||...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 356788899999999999753
No 295
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.32 E-value=1 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.8
Q ss_pred eEEEECCCCchHhHHHH
Q psy12977 51 QIFACAPTGSGKTAAFL 67 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~ 67 (226)
.+++.||+|+|||..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998654
No 296
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.99 E-value=0.62 Score=34.80 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCC
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPR 128 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (226)
..-.+++++-|++|+...+-.++...+. .|.++.+++|+..-.....+ ..+..-
T Consensus 51 ~~~~iv~g~ggs~~~~~~~a~L~~~a~~---~Gr~V~vLAp~~~s~~~l~~-------~~~l~~---------------- 104 (189)
T 2l8b_A 51 PSLAIVSGQGGAAGQRERVAELVMMARE---QGREVQIIAADRRSQMNMKQ-------DERLSG---------------- 104 (189)
T ss_dssp CCEECCBCSSCSHHHHHHHHHHHHHHHH---TTCCEEEECSTTHHHHHHSC-------TTTCSS----------------
T ss_pred CceEEEecccchHHHHHHHHHHHHHHHh---cCeEEEEEcCchHHHHHHHh-------hcCcCc----------------
Confidence 3456899999999998865555555443 36789999999866554332 111110
Q ss_pred cCCCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 129 SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 129 ~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+++ |-. .+.. ....+..=+.+||||+-.+... .+..++......+.|++++--+
T Consensus 105 -----~t~--t~~----~ll~--~~~~~tp~s~lIVD~AekLS~k-------E~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 105 -----ELI--TGR----RQLL--EGMAFTPGSTVIVDQGEKLSLK-------ETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp -----CSS--STT----TTTT--TSCCCCCCCEEEEEESSSHHHH-------HHHHHHHHHHHTTCCEEEEESS
T ss_pred -----cee--ehh----hhhc--CCCCCCCCCEEEEechhhcCHH-------HHHHHHHHHHhcCCEEEEeCCc
Confidence 000 110 1111 2222344458999999988554 3333433333467899987654
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.95 E-value=1.4 Score=36.55 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=19.0
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIH 72 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~ 72 (226)
.+.++++.||||+|||.....-+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999865444333
No 298
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.89 E-value=0.88 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 578999999999997643
No 299
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.73 E-value=0.76 Score=36.23 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 44999999999999754
No 300
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.57 E-value=4.8 Score=29.80 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=24.3
Q ss_pred EEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 52 ~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
++|.|++|||||....- +. . . +..++|+......-..+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~-la---~-~---~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI---G-D---APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH---C-S---CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHH-HH---h-c---CCCeEEEecCCCCCHHHHHHHHHH
Confidence 58999999999974332 21 1 1 335788887654433333434333
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.53 E-value=0.58 Score=34.44 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCeEEEECCCCchHhHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~ 67 (226)
|.-+++.||+|+|||...-
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457899999999997543
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.51 E-value=0.79 Score=34.14 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+++.|++|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567899999999999754
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.32 E-value=0.82 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.4
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
.++++.|++|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998643
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.23 E-value=0.77 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.13 E-value=0.8 Score=33.69 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3467899999999999754
No 306
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.09 E-value=0.77 Score=39.42 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=18.9
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHh
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
...++++.||+|+|||...-. +...+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 346899999999999986533 33443
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.98 E-value=0.79 Score=34.50 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.||+|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.92 E-value=0.75 Score=34.26 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.8
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+++.|++|+|||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999754
No 309
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.84 E-value=4.5 Score=34.04 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCc
Q psy12977 83 RAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANV 159 (226)
Q Consensus 83 ~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~ 159 (226)
++||.++++.-++.+.+.+.+. +..+..++++....++. .....+..+|+|+|.- + . ..+++.++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-----~-~--rGlDi~~v 369 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-----A-S--RGLDIKNI 369 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-----G-T--SSCCCTTC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-----h-h--CCCCcccC
Confidence 4999999999999998887765 67777777764433221 1223467889999963 1 2 68889999
Q ss_pred cEEEEcc
Q psy12977 160 EWLIVDE 166 (226)
Q Consensus 160 ~~lViDE 166 (226)
+++|.-+
T Consensus 370 ~~VI~~d 376 (434)
T 2db3_A 370 KHVINYD 376 (434)
T ss_dssp CEEEESS
T ss_pred CEEEEEC
Confidence 9988644
No 310
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.73 E-value=0.97 Score=33.50 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999754
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=80.72 E-value=0.83 Score=33.15 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.+++|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999754
No 312
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.55 E-value=0.91 Score=38.79 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999754
No 313
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=80.37 E-value=5.5 Score=35.84 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=49.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+.++||++|+++-++.+++.+++. +.++..+++. ...........+..+|+|+|.- +. ..+++. ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv-----~e---~GIDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI-----SE---MGANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG-----GG---TTCCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECch-----hh---cceeeC-Cc
Confidence 458999999999999988877665 6777777764 2223333344577899999953 12 567777 88
Q ss_pred EEEE
Q psy12977 161 WLIV 164 (226)
Q Consensus 161 ~lVi 164 (226)
++|.
T Consensus 476 ~VI~ 479 (673)
T 2wv9_A 476 RVID 479 (673)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.22 E-value=0.76 Score=35.10 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=13.3
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
+..|.-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 456778899999999999653
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.17 E-value=0.94 Score=33.07 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999754
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.04 E-value=0.93 Score=33.88 Aligned_cols=20 Identities=30% Similarity=0.059 Sum_probs=16.1
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+.-+.+.|++|+|||...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44567889999999999753
No 317
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.95 E-value=0.86 Score=37.22 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||||+|||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 318
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.94 E-value=0.93 Score=33.01 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|..+.+.|++|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999753
No 319
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.92 E-value=0.81 Score=34.40 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCeEEEECCCCchHhHH
Q psy12977 48 LGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~ 65 (226)
.|.-+.+.||+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999974
No 320
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.87 E-value=0.94 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999754
No 321
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.66 E-value=0.9 Score=39.20 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.0
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 66999999999999764
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.52 E-value=1 Score=33.23 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.4
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.51 E-value=1.2 Score=33.19 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.48 E-value=1 Score=32.98 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.5
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+..+++.|++|+|||...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 35677899999999999754
No 325
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.37 E-value=0.94 Score=37.27 Aligned_cols=17 Identities=41% Similarity=0.395 Sum_probs=14.3
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-++|.||||||||...
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 35789999999999754
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.21 E-value=1.1 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.01 E-value=1.1 Score=33.91 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+.+.||+|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.00 E-value=0.84 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.99 E-value=1.6 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.8
Q ss_pred cCCCCCeEEEECCCCchHhHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~ 65 (226)
.+..|..+.+.||+|+|||..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHH
T ss_pred EecCCCEEEEECCCCCcHHHH
Confidence 445788899999999999965
No 330
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.93 E-value=2.3 Score=36.71 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHT 204 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~ 204 (226)
...++++|+|||+.+-+ ........+++.+ +.|+++ ||++
T Consensus 412 ~~~~rlvvlDEA~kmD~----~~~~~~~~l~~~l---glQlii--atP~ 451 (483)
T 3euj_A 412 ILPCRLLFLDQAARLDA----MSINTLFELCERL---DMQLLI--AAPE 451 (483)
T ss_dssp CCCCCEEEESSGGGSCH----HHHHHHHHHHHHT---TCEEEE--EESS
T ss_pred CCceeEEEEeccccCCH----HHHHHHHHHHHHc---CCEEEE--ECcc
Confidence 35899999999954433 3667777777776 899986 5544
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.85 E-value=0.99 Score=33.24 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.79 E-value=1.7 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=19.4
Q ss_pred cCCCCCeEEEECCCCchHhHHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~~ 69 (226)
-+..|.-+++.||+|+|||.....-
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4456788999999999999765433
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.75 E-value=0.94 Score=33.90 Aligned_cols=19 Identities=32% Similarity=0.065 Sum_probs=15.1
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456789999999999753
No 334
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=78.74 E-value=0.75 Score=40.85 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=14.0
Q ss_pred eEEEECCCCchHhHH
Q psy12977 51 QIFACAPTGSGKTAA 65 (226)
Q Consensus 51 ~~li~apTGsGKT~~ 65 (226)
++++.||||+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999975
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.68 E-value=0.95 Score=32.89 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=11.3
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999764
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.67 E-value=1.1 Score=33.46 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999754
No 337
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.52 E-value=1.2 Score=34.45 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=23.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+..+++.+
T Consensus 161 ~~~p~llllDEPts~LD~---~~~~~i~~~l~~l 191 (235)
T 3tif_A 161 ANNPPIILADQPTWALDS---KTGEKIMQLLKKL 191 (235)
T ss_dssp TTCCSEEEEESTTTTSCH---HHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCH---HHHHHHHHHHHHH
Confidence 556789999999988887 5666777776666
No 338
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.78 E-value=0.43 Score=34.76 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=49.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.++++.-++.+.+.++.. +..+..+.++.....+. .....+..+|+|+|.. .. ..+++.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~---~Gid~~ 97 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDV-----AA---RGIDIP 97 (170)
Confidence 458999999999999988887665 55555555543322221 1222456789999942 11 566777
Q ss_pred CccEEEEcccc
Q psy12977 158 NVEWLIVDESD 168 (226)
Q Consensus 158 ~~~~lViDE~h 168 (226)
+++++|.-+..
T Consensus 98 ~~~~Vi~~~~p 108 (170)
T 2yjt_D 98 DVSHVFNFDMP 108 (170)
Confidence 88888765543
No 339
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.25 E-value=1.1 Score=39.18 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999754
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.02 E-value=1.2 Score=33.28 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.97 E-value=1.1 Score=34.09 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
...+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999754
No 342
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.71 E-value=12 Score=31.97 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=49.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec--------chhhhh---hhCCCcC-CCCCEEEECchHHHHhHh
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK--------IQQAAE---KFGPRSA-QKFDVLITTPNKLVYLLQ 148 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~~~-~~~~IiV~Tp~~l~~~~~ 148 (226)
+.++||.+++++-++.+.+.+.............+.| +....+ ....... +..+|+|+|..
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~------- 461 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV------- 461 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCC-------
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcch-------
Confidence 4589999999999999999998875433344444433 111111 1112223 56799999953
Q ss_pred cCCCCCCCCCccEEEEcccc
Q psy12977 149 MDPPALNLANVEWLIVDESD 168 (226)
Q Consensus 149 ~~~~~~~~~~~~~lViDE~h 168 (226)
....+++.+++++|.=+..
T Consensus 462 -~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 462 -ADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp -TTCCEETTSCSEEEEESCC
T ss_pred -hhcCCccccCCEEEEeCCC
Confidence 2268889999998875543
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.59 E-value=1 Score=32.93 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+++.|++|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.57 E-value=1 Score=38.05 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.6
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-++|.||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999754
No 345
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.46 E-value=2.2 Score=35.91 Aligned_cols=42 Identities=7% Similarity=-0.103 Sum_probs=25.8
Q ss_pred CCCeEEEECCCCchHhHHHHHHHHHHhcCC--CCCCceEEEEcc
Q psy12977 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGP--KNLGFRAVIVCP 89 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~~~~~~~~~~~--~~~~~~~iil~P 89 (226)
.|.-+.+.||+|+|||......++...... ...+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 457789999999999976543333333211 112346777754
No 346
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.27 E-value=0.93 Score=35.31 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4467899999999999754
No 347
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.18 E-value=1.1 Score=40.73 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=16.6
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
...++++.||+|+|||...-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 35689999999999998653
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=77.17 E-value=1.2 Score=31.76 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.15 E-value=1.4 Score=34.13 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHH
Confidence 4566788899999999999974
No 350
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.14 E-value=3.2 Score=35.00 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=46.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+.+++|++|+++-++.+++.+++. +.++..+++.. ..........+..+|+|+|.- +. ..+++. +.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~v-----~e---~GiDip-~~ 236 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTDI-----SE---MGANFK-AD 236 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECGG-----GG---TSCCCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECch-----HH---cCcccC-Cc
Confidence 347999999999999999888776 66777777652 222333334567899999963 12 466665 55
Q ss_pred EE
Q psy12977 161 WL 162 (226)
Q Consensus 161 ~l 162 (226)
.+
T Consensus 237 ~V 238 (431)
T 2v6i_A 237 RV 238 (431)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.13 E-value=1.2 Score=33.67 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=15.1
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
...+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999754
No 352
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.85 E-value=1.8 Score=35.46 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
++.+++.||+|+|||.....
T Consensus 123 gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45579999999999975443
No 353
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=76.67 E-value=1.4 Score=33.06 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.0
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
...+..+++.|++|+|||...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345678899999999999754
No 354
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.64 E-value=1.4 Score=34.49 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.4
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+.+.|++|+|||...
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 889999999999999764
No 355
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.57 E-value=1.2 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.4
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+++.|++|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=76.27 E-value=1.2 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+++.|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46889999999999754
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=76.16 E-value=23 Score=28.80 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.9
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
..+.+.|++|+|||....
T Consensus 80 ~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 358
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.14 E-value=11 Score=30.23 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=51.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.+... +..+..++++.....+. .....+..+|+|+|.- ....+++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v--------a~~Gidi~ 95 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV--------AARGLDIP 95 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST--------TTCSTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech--------hhcCcccc
Confidence 448999999999999888877654 67777777763332211 1222456789999953 12678889
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.=+.
T Consensus 96 ~v~~VI~~d~ 105 (300)
T 3i32_A 96 QVDLVVHYRM 105 (300)
T ss_dssp CCSEEEESSC
T ss_pred ceeEEEEcCC
Confidence 9998886443
No 359
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.10 E-value=1.5 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=16.1
Q ss_pred eEEEECCCCchHhHHHHHHHHH
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIH 72 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~ 72 (226)
-.++.|++|||||.....-+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999865443333
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.93 E-value=1.4 Score=34.13 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
...+++.||+|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.93 E-value=1.6 Score=33.36 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999754
No 362
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.85 E-value=1.1 Score=37.13 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEE
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM 198 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~ 198 (226)
.+.+++++||.-.-+|. .....+..+++.+...+..+++
T Consensus 302 ~~p~~lllDEpt~~LD~---~~~~~~~~~l~~l~~~g~tvi~ 340 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDT---ENKEKIASVLKELERLNKVIVF 340 (365)
T ss_dssp TTCCEEEEESCCTTSCH---HHHHHHHHHHHGGGGSSSEEEE
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHHHHHHHhCCCEEEE
Confidence 46689999999988887 5777777777777433344443
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.72 E-value=1.4 Score=32.41 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.4
Q ss_pred EEEECCCCchHhHHHH
Q psy12977 52 IFACAPTGSGKTAAFL 67 (226)
Q Consensus 52 ~li~apTGsGKT~~~~ 67 (226)
+++.|++|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6799999999997643
No 364
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.65 E-value=1.5 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.2
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+.+.||+|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999753
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.62 E-value=1.4 Score=32.27 Aligned_cols=16 Identities=38% Similarity=0.250 Sum_probs=13.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999754
No 366
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=75.58 E-value=1.4 Score=33.81 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
..+-+++.||+||||+.-.
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456789999999998754
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.46 E-value=1.3 Score=33.56 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.3
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.||+||||+.-.
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999754
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.46 E-value=1.3 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=75.44 E-value=2.1 Score=31.84 Aligned_cols=43 Identities=9% Similarity=-0.112 Sum_probs=26.4
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
..+.+++|+||+..+-.. ...+...+..+++.. ..+++-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~-~~~~~~~l~~~l~~~----~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELF-SQLFIQAVRQTLSTP----GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTT-CSHHHHHHHHHHHCS----SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccc-cHHHHHHHHHHHhCC----CcEEEEEeec
Confidence 456789999998766322 124777777776532 2345445664
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.43 E-value=1.4 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.7
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999753
No 371
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.35 E-value=1.4 Score=32.84 Aligned_cols=16 Identities=31% Similarity=0.235 Sum_probs=13.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.|++|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999754
No 372
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.34 E-value=1.4 Score=40.61 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=17.0
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..++.+++.||+|+|||...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 45688999999999999753
No 373
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.20 E-value=1.4 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999753
No 374
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.16 E-value=3.3 Score=33.57 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
.++-+.+.+++|+|||....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668899999999997644
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=75.05 E-value=1.8 Score=33.72 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+..+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 376
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.03 E-value=2.4 Score=34.87 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=17.6
Q ss_pred CCCCeEEEECCCCchHhHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIP 69 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~ 69 (226)
..|.-+.+.||+|+|||......
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34667889999999999754443
No 377
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.86 E-value=3 Score=34.33 Aligned_cols=75 Identities=17% Similarity=0.052 Sum_probs=44.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.++||.+++++-++.+.+.+.+. +..+..++++.....+. .....+..+|+|+|.. ....+++.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~--------~~~Gidip 347 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL--------LARGIDVQ 347 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS--------CC--CCGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc--------cccCCCcc
Confidence 347999999999999988877654 56666666553332211 1123456789999963 22678888
Q ss_pred CccEEEEccc
Q psy12977 158 NVEWLIVDES 167 (226)
Q Consensus 158 ~~~~lViDE~ 167 (226)
+++++|.-+.
T Consensus 348 ~v~~Vi~~~~ 357 (414)
T 3eiq_A 348 QVSLVINYDL 357 (414)
T ss_dssp GCSCEEESSC
T ss_pred CCCEEEEeCC
Confidence 9998886444
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=74.84 E-value=1.5 Score=31.18 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.6
Q ss_pred CeEEEECCCCchHhHH
Q psy12977 50 RQIFACAPTGSGKTAA 65 (226)
Q Consensus 50 ~~~li~apTGsGKT~~ 65 (226)
.-.++.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4568999999999975
No 379
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.62 E-value=1.7 Score=34.08 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=28.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+.+-+++++||.-.-+|. .....+..+++.+. .. ..++++..
T Consensus 171 ~~~p~lllLDEPts~LD~---~~~~~i~~~l~~l~-~~-~tviivtH 212 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDS---KTEYLFQKAVEDLR-KN-RTLIIIAH 212 (260)
T ss_dssp HHCCSEEEEECCCCTTCH---HHHHHHHHHHHHHT-TT-SEEEEECS
T ss_pred HcCCCEEEEECccccCCH---HHHHHHHHHHHHhc-CC-CEEEEEcC
Confidence 344579999999988887 56777777777773 33 45555443
No 380
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.52 E-value=7.9 Score=37.16 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=57.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCC
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLA 157 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~ 157 (226)
+.+++|++++++-++.+.+.+++... +.++...+|......+. .....+..+|+|||.- +. ..+++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v-----~e---~GiDip 881 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-----IE---TGIDIP 881 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST-----TG---GGSCCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc-----ce---eeeccc
Confidence 56899999999999999998888753 45666666654332221 1223467899999962 22 678899
Q ss_pred CccEEEEcccccc
Q psy12977 158 NVEWLIVDESDKL 170 (226)
Q Consensus 158 ~~~~lViDE~h~l 170 (226)
+++++|+..++..
T Consensus 882 ~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 882 TANTIIIERADHF 894 (1151)
T ss_dssp TEEEEEETTTTSS
T ss_pred CCcEEEEeCCCCC
Confidence 9999999888753
No 381
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.50 E-value=1.4 Score=45.80 Aligned_cols=19 Identities=47% Similarity=0.793 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.++++++.||||+|||...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3789999999999999754
No 382
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=74.36 E-value=5.1 Score=31.51 Aligned_cols=53 Identities=6% Similarity=-0.058 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~ 104 (226)
..|..+++.+.+|+|||...+.-+.+.+.+ +.+++|+.-. +-..++.+.++.+
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~~~----Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKS----DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHT----TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHHHC----CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 456778898777777774333334455543 5577777643 3344555555555
No 383
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.25 E-value=1.9 Score=31.12 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCCCeEEEECCCCchHhHH
Q psy12977 47 PLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~ 65 (226)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999974
No 384
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=74.06 E-value=1.6 Score=37.87 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.7
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
+.+++.||+|+|||...
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999754
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=74.04 E-value=1.4 Score=32.02 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.1
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-.++.||+|+|||...
T Consensus 27 g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 36789999999999753
No 386
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=73.78 E-value=1.6 Score=33.82 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.6
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHH
Confidence 4566788899999999999975
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.74 E-value=1.7 Score=32.85 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 388
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=73.69 E-value=1.6 Score=33.27 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=31.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
..+-+++++||.-.-+|. .....+..+++.+.. ....++++..-.+.+
T Consensus 149 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDE---DSKHKVLKSILEILK-EKGIVIISSREELSY 196 (214)
T ss_dssp TSCCSEEEEESTTTTSCT---TTHHHHHHHHHHHHH-HHSEEEEEESSCCTT
T ss_pred HhCCCEEEEECCCcCCCH---HHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH
Confidence 556789999999988887 566777776666522 233455544443333
No 389
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=73.63 E-value=13 Score=31.46 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=48.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCccE
Q psy12977 82 FRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161 (226)
Q Consensus 82 ~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~ 161 (226)
.++||.+|++.-++++++.+++. +..+..+.+.... ........+..+|+|+|.- +. ..+++.. ++
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~v-----~~---~GiDip~-~~ 254 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTDI-----SE---MGANFRA-GR 254 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECGG-----GG---SSCCCCC-SE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECCH-----HH---hCcCCCC-CE
Confidence 47999999999999988887654 6666666665432 3333444677899999953 22 5777777 77
Q ss_pred EE
Q psy12977 162 LI 163 (226)
Q Consensus 162 lV 163 (226)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 390
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=73.41 E-value=1.7 Score=33.87 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=29.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+-+++++||.-.-+|. .....+..+++.+ ..+ ..++++..
T Consensus 161 ~~~p~lllLDEPts~LD~---~~~~~i~~~l~~~-~~g-~tviivtH 202 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDY---ESEHVIMRNMHKI-CKG-RTVIIIAH 202 (247)
T ss_dssp TTCCSEEEECCCCSCCCH---HHHHHHHHHHHHH-HTT-SEEEEECS
T ss_pred hcCCCEEEEeCCcccCCH---HHHHHHHHHHHHH-cCC-CEEEEEeC
Confidence 556689999999988887 5677777777666 233 34554443
No 391
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.16 E-value=1.7 Score=33.09 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.6
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 392
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.16 E-value=1.7 Score=39.47 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
.+.++++.||+|+|||....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35789999999999997643
No 393
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=73.12 E-value=1.8 Score=34.93 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
+.+-+++++||+=.-+|. .....+...++.+. .. ..+++.+
T Consensus 206 ~~~p~iLlLDEPts~LD~---~~~~~i~~~l~~l~-~~-~Tvi~it 246 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDT---SNERAIQASLAKVC-AN-RTTIVVA 246 (306)
T ss_dssp HHCCSEEEEECCSSCCCH---HHHHHHHHHHHHHH-TT-SEEEEEC
T ss_pred HhCCCEEEEECCcccCCH---HHHHHHHHHHHHHc-CC-CEEEEEE
Confidence 345679999999988887 46666666666652 23 3444433
No 394
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=73.06 E-value=1.8 Score=35.30 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.3
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+-+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999753
No 395
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.78 E-value=2 Score=33.73 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=23.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+..+++.+
T Consensus 169 ~~~p~lllLDEPts~LD~---~~~~~~~~~l~~l 199 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDP---ELVGEVLRIMQQL 199 (262)
T ss_dssp HTCCSEEEEESTTTTSCH---HHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCH---HHHHHHHHHHHHH
Confidence 455689999999988887 5666666666665
No 396
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=72.73 E-value=2.2 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=17.2
Q ss_pred CCCCCeEEEECCCCchHhHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~ 66 (226)
+..++.+.+.||+|+|||...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345778999999999999753
No 397
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=72.68 E-value=2.1 Score=32.82 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.5
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHH
Confidence 4556788899999999999974
No 398
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.40 E-value=2.1 Score=33.69 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=24.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+..+++.+
T Consensus 154 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~l 184 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDR---EGKTDLLRIVEKW 184 (266)
T ss_dssp TTCCSEEEEESTTTTCCH---HHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCH---HHHHHHHHHHHHH
Confidence 556789999999988887 5666777666665
No 399
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=72.34 E-value=2.2 Score=33.90 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=23.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+..+++.+
T Consensus 159 ~~~P~lLlLDEPts~LD~---~~~~~i~~~l~~l 189 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDP---MGVSEIMKLLVEM 189 (275)
T ss_dssp TTCCSEEEEECTTTTCCH---HHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCH---HHHHHHHHHHHHH
Confidence 556789999999988887 4556666666555
No 400
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.30 E-value=2.1 Score=33.73 Aligned_cols=41 Identities=17% Similarity=0.052 Sum_probs=29.0
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSA 201 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SA 201 (226)
.+-+++++||.-.-+|. .....+..+++.+... ...++++.
T Consensus 181 ~~p~lLlLDEPts~LD~---~~~~~l~~~l~~l~~~-g~tviivt 221 (267)
T 2zu0_C 181 LEPELCILDESDSGLDI---DALKVVADGVNSLRDG-KRSFIIVT 221 (267)
T ss_dssp HCCSEEEEESTTTTCCH---HHHHHHHHHHHTTCCS-SCEEEEEC
T ss_pred hCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 34579999999988887 5777888888777333 33455433
No 401
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.29 E-value=2.1 Score=33.81 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=30.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+-+++++||.-.-+|. .....+..+++.+.......++++
T Consensus 172 ~~~p~lllLDEPts~LD~---~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDA---GNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TTCCSEEEEESTTTTCCH---HHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred hcCCCEEEEECCccCCCH---HHHHHHHHHHHHHHhhcCCEEEEE
Confidence 566789999999998887 577788888877733223445543
No 402
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.16 E-value=2.1 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
..+-+++++||.-.-+|. .....+..+++.+... ...++++..
T Consensus 162 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~l~~~-g~tiiivtH 204 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDV---LNAREVRKILKQASQE-GLTILVSSH 204 (256)
T ss_dssp TTCCSEEEEESTTTTCCH---HHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HcCCCEEEEeCCccccCH---HHHHHHHHHHHHHHhC-CCEEEEEcC
Confidence 556789999999988887 5666777666666222 334444433
No 403
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.14 E-value=8.3 Score=33.04 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=45.1
Q ss_pred CchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec--------chhhhh---hhCC
Q psy12977 59 GSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK--------IQQAAE---KFGP 127 (226)
Q Consensus 59 GsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~ 127 (226)
.++|-....-.+...... ..+.++||.++++.-++.+.+.+.+.....+.+...+.| +....+ ....
T Consensus 370 ~~~K~~~L~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRY--NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp CCHHHHHHHHHHHHHHHH--CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------
T ss_pred CChHHHHHHHHHHHHhcC--CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 466765433322232211 224589999999999999998887653222333332222 111111 1112
Q ss_pred CcC-CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccc
Q psy12977 128 RSA-QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168 (226)
Q Consensus 128 ~~~-~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h 168 (226)
... +..+|+|+|.- ....+++.++++||.=+..
T Consensus 448 F~~~g~~~vLvaT~~--------~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 448 FKTSKDNRLLIATSV--------ADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp ------CCEEEEEC-------------------CEEEEETCC
T ss_pred hcccCceEEEEEcCc--------hhcCCCchhCCEEEEeCCC
Confidence 223 56789999953 1267889999999875553
No 404
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.01 E-value=15 Score=30.33 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=50.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec--------chhhhhh---hCCCcCCCCCEEEECchHHHHhHhc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK--------IQQAAEK---FGPRSAQKFDVLITTPNKLVYLLQM 149 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~IiV~Tp~~l~~~~~~ 149 (226)
+.++||.+++++-+..+.+.++.. +..+..+.| +....++ ......+..+|+|+|.. + .
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~-~----~- 430 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-G----E- 430 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-G----G-
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCc-c----c-
Confidence 558999999999999988888776 667776666 2211111 11112355789999942 1 1
Q ss_pred CCCCCCCCCccEEEEcccc
Q psy12977 150 DPPALNLANVEWLIVDESD 168 (226)
Q Consensus 150 ~~~~~~~~~~~~lViDE~h 168 (226)
..+++..++++|.-+..
T Consensus 431 --~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 431 --EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --GGGGSTTCCEEEESSCC
T ss_pred --cCCCchhCCEEEEeCCC
Confidence 57778889999876654
No 405
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.88 E-value=2.5 Score=31.33 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=17.9
Q ss_pred CCCCCeEEEECCCCchHhHHHH
Q psy12977 46 SPLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 46 ~~~~~~~li~apTGsGKT~~~~ 67 (226)
...|+-+++.|++|+|||...+
T Consensus 13 ~v~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHH
Confidence 3567889999999999996543
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.84 E-value=2 Score=32.83 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=28.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
..+-+++++||.-.-+|. .....+..+++.+...+ ..++++
T Consensus 156 ~~~p~lllLDEPt~~LD~---~~~~~~~~~l~~l~~~g-~tvi~v 196 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDS---ANTKRVMDIFLKINEGG-TSIVMV 196 (224)
T ss_dssp TTCCSEEEEESTTTTCCH---HHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred HcCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHHCC-CEEEEE
Confidence 556789999999988887 56677777766663233 344443
No 407
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=71.74 E-value=2.3 Score=33.27 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDV 207 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~ 207 (226)
..+-+++++||.-.-+|. .....+..+++.+... ...++++..-.+.+
T Consensus 169 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAP---GLAHDIFNHVLELKAK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HTCCSEEEEESTTTTCCH---HHHHHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred HcCCCEEEEeCCccCCCH---HHHHHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence 456789999999988887 5666677666665222 23444433333333
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.58 E-value=2.3 Score=32.84 Aligned_cols=52 Identities=8% Similarity=0.067 Sum_probs=32.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWC 211 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~~ 211 (226)
..+-+++++||.-.-+|. .....+..+++.+...+ ..++++..-.+.+..++
T Consensus 155 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~~~~~g-~tvi~vtHd~~~~~~~~ 206 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAP---ILVSEVFEVIQKINQEG-TTILLVEQNALGALKVA 206 (240)
T ss_dssp TTCCSEEEEECTTTTCCH---HHHHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHC
T ss_pred HcCCCEEEEcCCcccCCH---HHHHHHHHHHHHHHHCC-CEEEEEecCHHHHHHhC
Confidence 556789999999988887 56667777766662223 34444333333444433
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=71.53 E-value=2.1 Score=32.97 Aligned_cols=20 Identities=25% Similarity=0.057 Sum_probs=15.9
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..+.-+-+.||.|||||...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34556789999999999764
No 410
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.49 E-value=1.8 Score=32.27 Aligned_cols=19 Identities=21% Similarity=-0.088 Sum_probs=15.3
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+.+.|++|+|||...
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456789999999999754
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=71.46 E-value=1.9 Score=34.23 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999754
No 412
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.42 E-value=3 Score=33.60 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=15.5
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+.+.||+|+|||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3567889999999999754
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.38 E-value=2.1 Score=32.20 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.3
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+.+.|++|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.29 E-value=2.3 Score=33.49 Aligned_cols=51 Identities=4% Similarity=0.009 Sum_probs=31.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKW 210 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~~ 210 (226)
..+-+++++||.-.-+|. .....+..+++.+... ...++++..-.+.+..+
T Consensus 175 ~~~p~lllLDEPts~LD~---~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~ 225 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREV 225 (263)
T ss_dssp TTCCSEEEEESTTTTSCH---HHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCH---HHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHh
Confidence 556789999999988887 5666777776666323 34455543333333333
No 415
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.27 E-value=3.8 Score=40.91 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=29.3
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTR 91 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~ 91 (226)
..++.+++.+|+|+|||...+-.+...+.. +.+++|+.-..
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te~ 72 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 72 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEecC
Confidence 456899999999999997655555555543 44678876544
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.16 E-value=2.8 Score=31.72 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|.-+.+.||+|+|||...
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45777889999999999753
No 417
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=71.06 E-value=2.4 Score=33.45 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=27.0
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+-+++++||.=.-+|. .....+..+++.+.......++++..
T Consensus 165 ~p~lLllDEPts~LD~---~~~~~i~~~l~~l~~~~~~tvi~vtH 206 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDL---YHQQHTLRLLRQLTRQEPLAVCCVLH 206 (266)
T ss_dssp CCEEEEECCCCSSCCH---HHHHHHHHHHHHHHHHSSEEEEEECS
T ss_pred CCCEEEEeCccccCCH---HHHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 6789999999988887 46666666666652222234444333
No 418
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=71.00 E-value=6.1 Score=31.31 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=46.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCC
Q psy12977 80 LGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 80 ~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~ 156 (226)
.+.++||.+++++-++.+.+.+. ......++.....+. .....+..+|+|+|.. +. ..+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~---~Gid~ 282 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDV-----AS---RGLDI 282 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHH-----HH---TTCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCc-----cc---cCCCc
Confidence 34589999999998887766543 334444443222211 1122466789999952 22 57888
Q ss_pred CCccEEEEcccc
Q psy12977 157 ANVEWLIVDESD 168 (226)
Q Consensus 157 ~~~~~lViDE~h 168 (226)
.+++++|.-+..
T Consensus 283 ~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 283 PLVEKVINFDAP 294 (337)
T ss_dssp CCBSEEEESSCC
T ss_pred cCCCEEEEecCC
Confidence 999999875543
No 419
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.66 E-value=3 Score=33.52 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~ 67 (226)
..|.-+.+.||+|+|||....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 346678899999999997643
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=70.52 E-value=1.9 Score=31.82 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+.+.|++|||||...
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999754
No 421
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.51 E-value=2.5 Score=32.85 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=28.8
Q ss_pred CCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 157 ANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 157 ~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
.+-+++++||.-.-+|. .....+..+++.+... ...++++..
T Consensus 160 ~~p~lllLDEPts~LD~---~~~~~l~~~l~~l~~~-g~tvi~vtH 201 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDI---DALKVVARGVNAMRGP-NFGALVITH 201 (250)
T ss_dssp HCCSEEEEECGGGTTCH---HHHHHHHHHHHHHCST-TCEEEEECS
T ss_pred cCCCEEEEeCCCcCCCH---HHHHHHHHHHHHHHhc-CCEEEEEec
Confidence 34579999999988887 5777777777777333 334444333
No 422
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.26 E-value=20 Score=30.44 Aligned_cols=92 Identities=5% Similarity=-0.001 Sum_probs=56.3
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhh---CCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCc
Q psy12977 83 RAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKF---GPRSAQKFDVLITTPNKLVYLLQMDPPALNLANV 159 (226)
Q Consensus 83 ~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~ 159 (226)
+.++++.+.+-+..+.+.+.+. +.++..+.|+.....+. .....+..+|+|+|+..+. ..+++.++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-------~GiDip~v 417 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-------TGISVKNL 417 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-------HSCCCCSE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-------cccccccC
Confidence 4444455566665555555443 44677777665433221 1122466789999976553 35678899
Q ss_pred cEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 160 ~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
+++|+.+...-.. .+.+.+-+..+.-
T Consensus 418 ~~vi~~~~~~s~~----~~~Q~~GR~gR~g 443 (510)
T 2oca_A 418 HHVVLAHGVKSKI----IVLQTIGRVLRKH 443 (510)
T ss_dssp EEEEESSCCCSCC----HHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCHH----HHHHHHhcccccC
Confidence 9999998883322 4777777776655
No 423
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=70.22 E-value=2.6 Score=32.88 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=25.5
Q ss_pred EEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 161 WLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 161 ~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
++++||.-.-+|. .....+..+++.+... ...++++..
T Consensus 154 lllLDEPts~LD~---~~~~~l~~~l~~l~~~-g~tviivtH 191 (249)
T 2qi9_C 154 LLLLDEPMNSLDV---AQQSALDKILSALSQQ-GLAIVMSSH 191 (249)
T ss_dssp EEEESSTTTTCCH---HHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred EEEEECCcccCCH---HHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 9999999988887 5667777776666222 334444433
No 424
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.11 E-value=2.6 Score=34.70 Aligned_cols=22 Identities=50% Similarity=0.548 Sum_probs=17.4
Q ss_pred cCCCCCe--EEEECCCCchHhHHH
Q psy12977 45 LSPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 45 ~~~~~~~--~li~apTGsGKT~~~ 66 (226)
..++|.| ++.-|+||||||...
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHCCcceeEEEeCCCCCCCceEe
Confidence 3456766 678999999999875
No 425
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.01 E-value=2.1 Score=39.00 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.8
Q ss_pred eEEEECCCCchHhHHHH
Q psy12977 51 QIFACAPTGSGKTAAFL 67 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~ 67 (226)
++++.||||+|||...-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997643
No 426
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=69.86 E-value=2.6 Score=32.88 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
..+-+++++||.-.-+|. .....+..+++.+.......++++..-.+.+..
T Consensus 144 ~~~p~lllLDEPts~LD~---~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 194 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDL---ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA 194 (253)
T ss_dssp HTTCSEEEESSSSTTSCH---HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH
T ss_pred HcCCCEEEEeCCcccCCH---HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 445679999999988887 566667666666522213344544333333333
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.73 E-value=3.3 Score=33.42 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+++.|+.|+|||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4689999999999753
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=69.68 E-value=2.3 Score=32.62 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|.-+++.|++|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5677899999999999753
No 429
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=69.51 E-value=1.9 Score=35.61 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=0.0
Q ss_pred EEEECCCCchHhHHH
Q psy12977 52 IFACAPTGSGKTAAF 66 (226)
Q Consensus 52 ~li~apTGsGKT~~~ 66 (226)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 430
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=69.42 E-value=2.1 Score=32.90 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=14.1
Q ss_pred cCCCCCeEEEECCCCchHhHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~ 66 (226)
....|.-+++.|+.|+|||...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp --CCCCEEEEECCC---CHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHH
Confidence 3346778999999999999764
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=68.90 E-value=2.4 Score=30.98 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.1
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+.+.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 432
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=68.65 E-value=12 Score=34.15 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=49.0
Q ss_pred CchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEe--------cchhhhhh---hCC
Q psy12977 59 GSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIG--------KIQQAAEK---FGP 127 (226)
Q Consensus 59 GsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~ 127 (226)
.++|-....--+...+.. ..+.++||.++++..+..+.+.++......+.+...+. ++.....+ ...
T Consensus 611 ~~~K~~~L~~lL~~~~~~--~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRY--NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp CCHHHHHHHHHHHHHHHH--CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------
T ss_pred CChHHHHHHHHHHHHhcc--CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHH
Confidence 466765433322222221 22458999999999999999988764322222222221 22211111 112
Q ss_pred CcC-CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEcccc
Q psy12977 128 RSA-QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168 (226)
Q Consensus 128 ~~~-~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~h 168 (226)
... +..+|+|+|.. ....+++..+++||.=+..
T Consensus 689 F~~~g~~~vLVaT~~--------~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 689 FKTSKDNRLLIATSV--------ADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp -----CCSEEEEECC---------------CCCSEEEEESCC
T ss_pred hhccCCceEEEEcCc--------hhcCCCchhCCEEEEeCCC
Confidence 223 56789999953 1267889999999875553
No 433
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=68.60 E-value=8.1 Score=32.79 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=45.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+.++||.+|++.-++.+.+.++.. +..+..+.+.. ....+.....+..+|+|+|.-. ...+++.. +
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~v~--------~~GiDip~-~ 255 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTDIS--------EMGANFGA-S 255 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESSCC-----------CCCSC-S
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECChH--------HhCeecCC-C
Confidence 347999999999999999888776 66666666532 1122222335678999999531 14666777 6
Q ss_pred EEEE
Q psy12977 161 WLIV 164 (226)
Q Consensus 161 ~lVi 164 (226)
+||-
T Consensus 256 ~VI~ 259 (459)
T 2z83_A 256 RVID 259 (459)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 434
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=68.52 E-value=7.2 Score=32.26 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=50.3
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhcCCCeEE-EEecchhhhhhhCCCcCCCCCEEEE----CchHHHHhHhcCCCCCCC
Q psy12977 82 FRAVIVCPTRELAKQTYNETVRLSEGLGLRAH-VIGKIQQAAEKFGPRSAQKFDVLIT----TPNKLVYLLQMDPPALNL 156 (226)
Q Consensus 82 ~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~IiV~----Tp~~l~~~~~~~~~~~~~ 156 (226)
.++||.|+++.-++.+.+.++.. +..+. .+.+... . ......+..+|+|+ |.- ....+++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~~r--~-~~~f~~g~~~vLvat~s~T~~--------~~~GiDi 317 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEFEK--N-FEDFKVGKINILIGVQAYYGK--------LTRGVDL 317 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCHHH--H-HHHHHTTSCSEEEEECCTTCC--------CCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCcch--H-HHHHhCCCCeEEEEecCcCch--------hhccCcc
Confidence 58999999999999999888765 56665 4444322 1 33334567899999 642 2268889
Q ss_pred CC-ccEEEEcccc
Q psy12977 157 AN-VEWLIVDESD 168 (226)
Q Consensus 157 ~~-~~~lViDE~h 168 (226)
.+ ++++|.-+.-
T Consensus 318 p~~v~~VI~~~~p 330 (414)
T 3oiy_A 318 PERIKYVIFWGTP 330 (414)
T ss_dssp TTTCCEEEEESCC
T ss_pred ccccCEEEEECCC
Confidence 99 9998864443
No 435
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=68.50 E-value=21 Score=33.36 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=50.7
Q ss_pred CchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec--------chhhhhh---hCC
Q psy12977 59 GSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK--------IQQAAEK---FGP 127 (226)
Q Consensus 59 GsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~ 127 (226)
.++|-... .-++.... ....+.++||.++++..++.+.+.+.+.....+.+...+.| +....++ ...
T Consensus 611 ~~~K~~~L-~~lL~~~~-~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 611 ENPKLEEL-VCILDDAY-RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp CCHHHHHH-HHHHHHTT-TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCHHHHHH-HHHHHHHh-ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHH
Confidence 35665533 33333322 12335699999999999999999988763332333332222 2211111 112
Q ss_pred CcC-CCCCEEEECchHHHHhHhcCCCCCCCCCccEEEEccc
Q psy12977 128 RSA-QKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167 (226)
Q Consensus 128 ~~~-~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~~lViDE~ 167 (226)
... +..+|+|+|.- ....+++..+++||.-+.
T Consensus 689 Fr~~g~~~VLVaT~~--------~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 689 FKTSKDNRLLIATSV--------ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----CCSEEEEECC--------------CCCCSEEEEESC
T ss_pred hhccCCeeEEEEeCc--------hhcCCcchhCCEEEEeCC
Confidence 223 56789999952 226788999999997555
No 436
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=68.49 E-value=2.5 Score=34.17 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.0
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
..|.-+.+.||+|+|||...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCchHHHHH
Confidence 45566789999999999753
No 437
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.09 E-value=2.6 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.|++|||||...
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999764
No 438
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=68.01 E-value=2.5 Score=32.67 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.8
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.|++|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=68.00 E-value=3 Score=33.09 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.2
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
+.+..|.-+.+.||+|+|||..
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHH
Confidence 3456788889999999999975
No 440
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=67.83 E-value=5.4 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=28.9
Q ss_pred CccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 158 ~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
.-.++++||.+.-+|. .....+..+++.+ ....|+++.|
T Consensus 86 ~~~~llLDEp~a~LD~---~~~~~~~~~l~~~-~~~~~~ivit 124 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDD---ANVKRVADLIKES-SKESQFIVIT 124 (173)
T ss_dssp CCSEEEEESTTTTCCH---HHHHHHHHHHHHH-TTTSEEEEEC
T ss_pred CCCEEEECCCccCCCH---HHHHHHHHHHHHh-ccCCEEEEEE
Confidence 3479999999998887 5667777777776 3456777654
No 441
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.79 E-value=5.4 Score=34.60 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=28.7
Q ss_pred CCCCeEEEECCCCchHhHHHHHHHHHHhcCCCCCCceEEEEcccHHHHHHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~iil~Pt~~L~~q~~~~ 100 (226)
..|.-+.+.+|+|+|||......+-. ... .+.+++++++-.. ..|+...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~---~G~~vi~~~~ee~-~~~l~~~ 327 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVEN-ACA---NKERAILFAYEES-RAQLLRN 327 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH-HHT---TTCCEEEEESSSC-HHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH-HHh---CCCCEEEEEEeCC-HHHHHHH
Confidence 45677899999999999754433222 221 1445677765432 2344443
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=67.75 E-value=1.3 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.2
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+.+.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3679999999999753
No 443
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=67.67 E-value=2.9 Score=34.53 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=16.6
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.+.|.| ++.-|+||||||...
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 76 ILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HTTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCcceEEEECCCCCCcceEe
Confidence 356655 788999999999864
No 444
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=67.59 E-value=2.7 Score=31.06 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.8
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
.+.+.|++|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 445
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=67.54 E-value=51 Score=29.17 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=46.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEec--------chhhhhh---hCCCcC-CCCCEEEECchHHHHhHh
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGK--------IQQAAEK---FGPRSA-QKFDVLITTPNKLVYLLQ 148 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~-~~~~IiV~Tp~~l~~~~~ 148 (226)
+.++||.+++++-++.+.+.++........++..+.| +....++ ...... +..+|+|+|..
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v------- 470 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV------- 470 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES-------
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech-------
Confidence 4589999999999999999888864332345554432 2111111 112223 56789999953
Q ss_pred cCCCCCCCCCccEEEEcccccccccCccchHHHHHH
Q psy12977 149 MDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAV 184 (226)
Q Consensus 149 ~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~ 184 (226)
....+++.++++||.-+...-.. .+.+.+-+
T Consensus 471 -~~~GiDip~v~~VI~~d~p~s~~----~~~Qr~GR 501 (696)
T 2ykg_A 471 -ADEGIDIAQCNLVILYEYVGNVI----KMIQTRGR 501 (696)
T ss_dssp -SCCC---CCCSEEEEESCC--CC----CC------
T ss_pred -hhcCCcCccCCEEEEeCCCCCHH----HHHHhhcc
Confidence 23788999999999755542222 46666666
No 446
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=67.36 E-value=2.8 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.4
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|+-+.+.||+|+|||..
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHH
Confidence 3556788899999999999975
No 447
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.15 E-value=3 Score=34.45 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.8
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.++|.| ++.-|+||||||...
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCceeee
Confidence 356765 689999999999874
No 448
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=67.15 E-value=2.3 Score=38.08 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=59.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHH--hhcCCCeEEEEecc--------hhhh---hhhCCCcCCCCCEEEECchHHHHhH
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRL--SEGLGLRAHVIGKI--------QQAA---EKFGPRSAQKFDVLITTPNKLVYLL 147 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~IiV~Tp~~l~~~~ 147 (226)
+.++||.++++..++.+.+.+++. ....+.++..+.++ .... ........+..+|+|+|..
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~------ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV------ 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS------
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc------
Confidence 468999999999999999988764 22235666666655 2111 1111223466789999953
Q ss_pred hcCCCCCCCCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 148 QMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 148 ~~~~~~~~~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
....+++.++++||.-+.- + +....+.++-+. ...+..+++++..
T Consensus 474 --~~~GIDip~v~~VI~~d~p----~---s~~~~~Qr~GRA-rr~g~~~~l~~~~ 518 (699)
T 4gl2_A 474 --AEEGLDIKECNIVIRYGLV----T---NEIAMVQARGRA-RADESTYVLVAHS 518 (699)
T ss_dssp --CCTTSCCCSCCCCEEESCC----C---CHHHHHHHHTTS-CSSSCEEEEEEES
T ss_pred --cccCCccccCCEEEEeCCC----C---CHHHHHHHcCCC-CCCCceEEEEEeC
Confidence 2368888999988843322 1 233344444442 2345566666554
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=67.09 E-value=3.5 Score=31.45 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCchHhHHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~~ 67 (226)
.+..+.+.|++|+|||...-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999997643
No 450
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=67.04 E-value=2.7 Score=33.62 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=13.9
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-+.+.|++|+|||...
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45679999999999753
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=66.92 E-value=2.8 Score=31.43 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCeEEEECCCCchHhHHH
Q psy12977 49 GRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~ 66 (226)
..-.++.||+|+|||...
T Consensus 23 ~~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLL 40 (203)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 345689999999999753
No 452
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.91 E-value=3.7 Score=33.93 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.7
Q ss_pred CCCCeEEEECCCCchHhHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~ 67 (226)
..+.-+.+.||+|+|||....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHH
Confidence 346678899999999997643
No 453
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=66.47 E-value=2.8 Score=35.11 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=16.8
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.+.|.| ++.-|+||||||...
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHH
T ss_pred hhcCceeeEeeecCCCCCCCeEe
Confidence 456765 678999999999864
No 454
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=66.37 E-value=13 Score=29.90 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCCccEEEEccccc-ccccCccchHHHHHHHHHhcCCCCceEEEEeeeC
Q psy12977 156 LANVEWLIVDESDK-LFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH 203 (226)
Q Consensus 156 ~~~~~~lViDE~h~-l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~ 203 (226)
+.+-+++|+||+|. +... ....+...++.. ++.+.+++.+.++
T Consensus 74 f~~~kvvii~~~~~kl~~~----~~~aLl~~le~p-~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA----INEQLLTLTGLL-HDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT----HHHHHHHHHTTC-BTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChH----HHHHHHHHHhcC-CCCeEEEEEcCCC
Confidence 44678999999998 6543 555666666654 4456666654443
No 455
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=66.35 E-value=5.7 Score=31.78 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCeEEEECCCCchHhHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~ 68 (226)
++-+.+.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 55677899999999976443
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.28 E-value=3.7 Score=34.83 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.5
Q ss_pred CeEEEECCCCchHhHHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~~ 68 (226)
+.+.+.|++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5788999999999976543
No 457
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=66.19 E-value=2.9 Score=32.32 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+.+.||+|+|||...
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=66.05 E-value=3.1 Score=31.67 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.8
Q ss_pred CCCCeEEEECCCCchHhHH
Q psy12977 47 PLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~ 65 (226)
..|.-+.+.|+.|+|||..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCCEEEEEECSTTSCHHHH
T ss_pred CCceEEEEECCCCCCHHHH
Confidence 4566788999999999974
No 459
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.00 E-value=6.9 Score=41.58 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=19.6
Q ss_pred cCCCCCeEEEECCCCchHhHHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~~ 68 (226)
....++.+++.||||+|||.++-.
T Consensus 902 ~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 902 ILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHheeeEEEECCCCCCHHHHHHH
Confidence 334568899999999999998754
No 460
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=65.95 E-value=3.4 Score=32.52 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeeeCchhHHH
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT~~~~~~~ 209 (226)
..+-+++++||.-.-+|. .....+..+++.+. . .++++..-.+.+..
T Consensus 144 ~~~p~lllLDEPts~LD~---~~~~~l~~~L~~~~--~--tviivtHd~~~~~~ 190 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDA---ARRHVISRYIKEYG--K--EGILVTHELDMLNL 190 (263)
T ss_dssp HTCCSEEEEECTTTTCCH---HHHHHHHHHHHHSC--S--EEEEEESCGGGGGG
T ss_pred HhCCCEEEEECCccccCH---HHHHHHHHHHHHhc--C--cEEEEEcCHHHHHH
Confidence 445679999999988887 57778888887772 2 55554443344333
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.79 E-value=2.5 Score=44.65 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=16.6
Q ss_pred CCCCeEEEECCCCchHhHH
Q psy12977 47 PLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~ 65 (226)
..+++++++||||+|||..
T Consensus 1302 ~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHH
T ss_pred HCCCcEEEECCCCCCHHHH
Confidence 4578999999999999964
No 462
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=65.34 E-value=2.7 Score=33.32 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.6
Q ss_pred CeEEEECCCCchHhHHHH
Q psy12977 50 RQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~~ 67 (226)
..+.+.|++|||||...-
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 358899999999997643
No 463
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.27 E-value=3.5 Score=30.17 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=16.1
Q ss_pred eEEEECCCCchHhHHHHHHHHHHh
Q psy12977 51 QIFACAPTGSGKTAAFLIPIIHSL 74 (226)
Q Consensus 51 ~~li~apTGsGKT~~~~~~~~~~~ 74 (226)
-+.+.|++|+|||... ..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 4679999999999743 3344444
No 464
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=65.01 E-value=3.2 Score=30.41 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.4
Q ss_pred CeEEEECCCCchHhHH
Q psy12977 50 RQIFACAPTGSGKTAA 65 (226)
Q Consensus 50 ~~~li~apTGsGKT~~ 65 (226)
.-+.+.|++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 4578999999999974
No 465
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.62 E-value=4 Score=42.65 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.4
Q ss_pred CCCCeEEEECCCCchHhHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~ 68 (226)
..++.+++.||||+|||.++-.
T Consensus 921 ~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 921 KTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHCSEEEEECSTTSSHHHHHHH
T ss_pred HhcceEEEECCCCCCHHHHHHH
Confidence 3468899999999999988654
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=64.54 E-value=3.7 Score=30.71 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
..+.+.+++|||||...
T Consensus 4 ~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 4 INIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999864
No 467
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=64.31 E-value=3.5 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.0
Q ss_pred cCCCCCeEEEECCCCchHhHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~ 65 (226)
....+..+.+.|++|+|||..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHH
Confidence 345667799999999999964
No 468
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=63.96 E-value=27 Score=23.32 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=29.1
Q ss_pred CceEEEEcccHHHHHH-HHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECch
Q psy12977 81 GFRAVIVCPTRELAKQ-TYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPN 141 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~ 141 (226)
..+++++|++--=..+ +...+++.++..++.+.....+... ... ...++|++++|+.
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~---~~~-~~~~~DlIist~~ 78 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE---IET-YMDGVHLICTTAR 78 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTT---TTT-STTSCSEEEESSC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHH---Hhh-ccCCCCEEEECCc
Confidence 3467888875433333 2445555555556543222211111 111 1346899999985
No 469
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=63.70 E-value=3.7 Score=33.76 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+...++.+
T Consensus 143 ~~~P~lLLLDEP~s~LD~---~~~~~l~~~l~~l 173 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDP---RTQENAREMLSVL 173 (348)
T ss_dssp TSCCSEEEEESSSTTSCH---HHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCH---HHHHHHHHHHHHH
Confidence 556789999999888887 4566666665555
No 470
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.59 E-value=3.2 Score=33.29 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.1
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.+.-+-+.||+|+|||...
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4456779999999999753
No 471
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=63.34 E-value=3.6 Score=34.03 Aligned_cols=20 Identities=50% Similarity=0.594 Sum_probs=15.9
Q ss_pred CCCe--EEEECCCCchHhHHHH
Q psy12977 48 LGRQ--IFACAPTGSGKTAAFL 67 (226)
Q Consensus 48 ~~~~--~li~apTGsGKT~~~~ 67 (226)
.|.+ ++.-|+||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3655 6899999999998753
No 472
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=63.22 E-value=4 Score=32.64 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=24.3
Q ss_pred cEEEEccccccccc---CccchHHHHHHHHHhcCCCCceEEEEe
Q psy12977 160 EWLIVDESDKLFEA---GVRGFRDQLAVIYAACSGPNLKRGMFS 200 (226)
Q Consensus 160 ~~lViDE~h~l~~~---~~~~~~~~i~~i~~~~~~~~~q~v~~S 200 (226)
-++|+||+|.+.+. ....+...+..+.... ++..+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL--PNLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC--TTEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc--CCeEEEEEC
Confidence 48999999988751 1113556666665554 456666644
No 473
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.02 E-value=3.4 Score=34.00 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=15.7
Q ss_pred CCCCe--EEEECCCCchHhHHH
Q psy12977 47 PLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~--~li~apTGsGKT~~~ 66 (226)
++|.| ++.-|+||||||...
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCceEEEEecCCCCCCCeEE
Confidence 34554 688999999999874
No 474
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=63.00 E-value=4.7 Score=33.24 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.4
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHH
Confidence 4556788899999999999975
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=62.91 E-value=4 Score=30.94 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCCeEEEECCCCchHhHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~ 66 (226)
+.|.-+++.|+.|+|||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 45677899999999999764
No 476
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=62.90 E-value=3.7 Score=33.93 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.2
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHH
T ss_pred EEEcCCCEEEEECCCCchHHHH
Confidence 3556778889999999999974
No 477
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=62.82 E-value=4.2 Score=33.62 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.3
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHH
T ss_pred EEEcCCCEEEEEcCCCchHHHH
Confidence 3556788889999999999975
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=62.79 E-value=3.5 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.2
Q ss_pred CeEEEECCCCchHhHHH
Q psy12977 50 RQIFACAPTGSGKTAAF 66 (226)
Q Consensus 50 ~~~li~apTGsGKT~~~ 66 (226)
.-+++.|++|||||...
T Consensus 259 ~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 479
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.56 E-value=3.5 Score=33.63 Aligned_cols=20 Identities=45% Similarity=0.541 Sum_probs=16.2
Q ss_pred CCCCe--EEEECCCCchHhHHH
Q psy12977 47 PLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~--~li~apTGsGKT~~~ 66 (226)
+.|.| ++.-|+||||||...
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEECCCCCCCceEe
Confidence 45655 788999999999874
No 480
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=62.40 E-value=4.3 Score=33.62 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.3
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHH
T ss_pred EEECCCCEEEEECCCCchHHHH
Confidence 4556788889999999999975
No 481
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=62.24 E-value=9.2 Score=30.27 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=15.8
Q ss_pred CCeEEEECCCCchHhHHHHHHHH
Q psy12977 49 GRQIFACAPTGSGKTAAFLIPII 71 (226)
Q Consensus 49 ~~~~li~apTGsGKT~~~~~~~~ 71 (226)
.+-+.+.+.-|.|||.....-+.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHH
Confidence 35566668899999987554333
No 482
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.00 E-value=4 Score=33.60 Aligned_cols=21 Identities=52% Similarity=0.605 Sum_probs=16.6
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.++|.| ++.-|+||||||...
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHH
T ss_pred hcCCceeEEEEECCCCCCCcEec
Confidence 356655 678999999999875
No 483
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=61.71 E-value=6.2 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.8
Q ss_pred cCCCCCeEEEECCCCchHhHHHH
Q psy12977 45 LSPLGRQIFACAPTGSGKTAAFL 67 (226)
Q Consensus 45 ~~~~~~~~li~apTGsGKT~~~~ 67 (226)
.+-.|..+.+.+|+|+|||....
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHH
Confidence 44558999999999999997643
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.64 E-value=5.3 Score=34.63 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=18.4
Q ss_pred CCCCeEEEECCCCchHhHHHHH
Q psy12977 47 PLGRQIFACAPTGSGKTAAFLI 68 (226)
Q Consensus 47 ~~~~~~li~apTGsGKT~~~~~ 68 (226)
..|..+.+.+|+|+|||.....
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHH
Confidence 4678899999999999976544
No 485
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=61.64 E-value=3.8 Score=33.34 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred EEEECCCCchHhHHH
Q psy12977 52 IFACAPTGSGKTAAF 66 (226)
Q Consensus 52 ~li~apTGsGKT~~~ 66 (226)
.++.||+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=61.62 E-value=3.7 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.9
Q ss_pred eEEEECCCCchHhHH
Q psy12977 51 QIFACAPTGSGKTAA 65 (226)
Q Consensus 51 ~~li~apTGsGKT~~ 65 (226)
++.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999964
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=61.61 E-value=2.3 Score=39.15 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.++.+++.||+|+|||...
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 4577999999999999854
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=61.60 E-value=3.9 Score=31.04 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCCeEEEECCCCchHhHHH
Q psy12977 48 LGRQIFACAPTGSGKTAAF 66 (226)
Q Consensus 48 ~~~~~li~apTGsGKT~~~ 66 (226)
.|.-+++.|+.|+|||...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 489
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=61.58 E-value=4.5 Score=31.28 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+..+++.+
T Consensus 142 ~~~p~lllLDEPts~LD~---~~~~~~~~~l~~l 172 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDL---KTKGVLMEELRFV 172 (240)
T ss_dssp TTCCSSBEEESTTSSCCH---HHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCH---HHHHHHHHHHHHH
Confidence 556789999999988887 4666666666555
No 490
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=61.52 E-value=4.5 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.2
Q ss_pred ccCCCCCeEEEECCCCchHhHH
Q psy12977 44 YLSPLGRQIFACAPTGSGKTAA 65 (226)
Q Consensus 44 ~~~~~~~~~li~apTGsGKT~~ 65 (226)
..+..|.-+.+.||+|+|||..
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHH
T ss_pred EEECCCCEEEEEcCCCchHHHH
Confidence 3556788889999999999975
No 491
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=61.41 E-value=3.8 Score=33.49 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=16.6
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.++|.| ++.-|+||||||...
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 76 CIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhCCCEEEEEeECCCCCCCcEEE
Confidence 356665 678999999999864
No 492
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=61.32 E-value=3.3 Score=34.24 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=16.6
Q ss_pred CCCCCe--EEEECCCCchHhHHH
Q psy12977 46 SPLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 46 ~~~~~~--~li~apTGsGKT~~~ 66 (226)
.++|.| ++.-|+||||||...
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 355655 789999999999874
No 493
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=60.94 E-value=4.7 Score=33.51 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.-.-+|. .....+...++.+
T Consensus 157 ~~~P~lLLLDEP~s~LD~---~~r~~l~~~l~~l 187 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDA---KLRVAMRAEIKKL 187 (372)
T ss_dssp TTCCSEEEEESTTTTSCH---HHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCCccCCH---HHHHHHHHHHHHH
Confidence 556789999999888877 4555555555544
No 494
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=60.71 E-value=17 Score=32.74 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=46.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhhhhCCCcCCCCCEEEECchHHHHhHhcCCCCCCCCCcc
Q psy12977 81 GFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160 (226)
Q Consensus 81 ~~~~iil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~~~~~~~~~~~~~~~ 160 (226)
+.++||.+++++-++++++.+++. +..+..++++...... ..++.+|+|+|.- +. ..++++ ++
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er----~~~~~~VLVATdV-----ae---rGIDId-V~ 458 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI----PTIGDVVVVATDA-----LM---TGYTGD-FD 458 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS----CSSSCEEEEECTT-----HH---HHCCCC-BS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH----HhCCCcEEEECCh-----HH---ccCCCC-Cc
Confidence 558999999999999998887764 6777777776544332 2344589999952 12 244454 87
Q ss_pred EEE
Q psy12977 161 WLI 163 (226)
Q Consensus 161 ~lV 163 (226)
++|
T Consensus 459 ~VI 461 (666)
T 3o8b_A 459 SVI 461 (666)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 495
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=60.33 E-value=3.8 Score=33.79 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhc
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAAC 189 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~ 189 (226)
..+-+++++||.=.-+|. .....+...++.+
T Consensus 156 ~~~P~lLLLDEP~s~LD~---~~r~~l~~~l~~l 186 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDA---RMRDSARALVKEV 186 (353)
T ss_dssp TTCCSEEEEESTTTTSCG---GGHHHHHHHHHHH
T ss_pred HhCCCEEEEECCcccCCH---HHHHHHHHHHHHH
Confidence 556789999999888887 4556666555554
No 496
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.29 E-value=4.4 Score=34.06 Aligned_cols=20 Identities=50% Similarity=0.599 Sum_probs=16.1
Q ss_pred CCCCe--EEEECCCCchHhHHH
Q psy12977 47 PLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~--~li~apTGsGKT~~~ 66 (226)
++|.| ++.-|+||||||...
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEe
Confidence 45655 688999999999875
No 497
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=60.22 E-value=4.7 Score=35.49 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCCccEEEEcccccccccCccchHHHHHHHHHhcCCCCceEEEEeee
Q psy12977 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202 (226)
Q Consensus 156 ~~~~~~lViDE~h~l~~~~~~~~~~~i~~i~~~~~~~~~q~v~~SAT 202 (226)
+.+-+++++||+-.-+|. .....+...++.+. .+ ..+++.+.
T Consensus 493 ~~~p~illlDEpts~LD~---~~~~~i~~~l~~~~-~~-~t~i~itH 534 (578)
T 4a82_A 493 LNNPPILILDEATSALDL---ESESIIQEALDVLS-KD-RTTLIVAH 534 (578)
T ss_dssp HHCCSEEEEESTTTTCCH---HHHHHHHHHHHHHT-TT-SEEEEECS
T ss_pred HcCCCEEEEECccccCCH---HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 445679999999988887 46667777776663 23 45555444
No 498
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.21 E-value=4 Score=33.85 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=16.1
Q ss_pred CCCCe--EEEECCCCchHhHHH
Q psy12977 47 PLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~--~li~apTGsGKT~~~ 66 (226)
+.|.| ++.-|+||||||...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeecCCCCCCceEE
Confidence 45655 688999999999874
No 499
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=60.14 E-value=4 Score=33.61 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=16.1
Q ss_pred CCCCe--EEEECCCCchHhHHH
Q psy12977 47 PLGRQ--IFACAPTGSGKTAAF 66 (226)
Q Consensus 47 ~~~~~--~li~apTGsGKT~~~ 66 (226)
+.|.| ++.-|+||||||...
T Consensus 86 l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 86 LEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceeEEeecCCCCCCCEEe
Confidence 45655 788999999999874
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=59.98 E-value=2.6 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=10.5
Q ss_pred eEEEECCCCchHhHHH
Q psy12977 51 QIFACAPTGSGKTAAF 66 (226)
Q Consensus 51 ~~li~apTGsGKT~~~ 66 (226)
-+.+.||+|||||...
T Consensus 7 iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEEESCC---CCTHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4779999999999754
Done!