RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12977
(226 letters)
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 223 bits (572), Expect = 4e-74
Identities = 101/178 (56%), Positives = 135/178 (75%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR++ A APTGSGKT AF IPI+ L+ P N GFRA+I+ PTRELA Q + E +++SEG
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G R H+I K AA+KFGP+S++KFD+L+TTPN+L+YLL+ DPP ++LA+VEWL+VDESD
Sbjct: 126 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVGLR 226
KLFE G GFRDQLA I+ AC+ ++R MFSAT DV +WC+ L + +++G R
Sbjct: 186 KLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 132 bits (334), Expect = 8e-37
Identities = 28/176 (15%), Positives = 68/176 (38%), Gaps = 14/176 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ APTG GKT ++ + R G ++ +V PT L KQT +L++
Sbjct: 36 GKSFTMVAPTGVGKTTFGMMTALWLARK----GKKSALVFPTVTLVKQTLERLQKLADEK 91
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQK--FDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+++ ++ +S ++ + +L+ + + + L+ +++ VD+
Sbjct: 92 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ----FVSKNREKLSQKRFDFVFVDD 147
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
D + +A ++ + R FS + + + + ++
Sbjct: 148 VDAVLKA---SRNIDTLLMMVGIP-EEIIRKAFSTIKQGKIYERPKNLKPGILVVS 199
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 126 bits (319), Expect = 3e-36
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL---GFRAVIVCPTRELAKQTYNETVRLS 105
G+ + A TGSGKT AFL+P++ +L + G +I+ PTRELA QT+ ++
Sbjct: 62 GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121
Query: 106 EGLGLRAHVI--GK--IQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
+ A +I GK +A ++L+ TP +L+ + + + + +++
Sbjct: 122 KNHDFSAGLIIGGKDLKHEAERINNI------NILVCTPGRLLQHMD-ETVSFHATDLQM 174
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLKRRVQ 220
L++DE+D++ + GF D + + P ++ + FSAT T+ V R LK
Sbjct: 175 LVLDEADRILDM---GFADTMNAVIENL--PKKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 221 INV 223
+ V
Sbjct: 230 VWV 232
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 121 bits (306), Expect = 5e-34
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL---RGPKNLGFRAVIVCPTRELAKQTYNETVRLS 105
GR + A A TGSGKT AFLIP + + R G +I+ PTRELA QT+ L
Sbjct: 91 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150
Query: 106 EGLGLRAH-VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIV 164
++G ++AE + ++++ TP +L+ +Q + P N++ L++
Sbjct: 151 THHVHTYGLIMGGSNRSAEAQ--KLGNGINIIVATPGRLLDHMQ-NTPGFMYKNLQCLVI 207
Query: 165 DESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLKR 217
DE+D++ + GF ++L I P ++ M FSAT T V R LK+
Sbjct: 208 DEADRILDV---GFEEELKQIIKLL--PTRRQTMLFSATQTRKVEDLARISLKK 256
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 118 bits (298), Expect = 5e-33
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 21/182 (11%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL-RGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
GR I A TGSGKT AF +PI+++L P+ A+++ PTRELA Q + L
Sbjct: 80 GRDIIGLAETGSGKTGAFALPILNALLETPQ--RLFALVLTPTRELAFQISEQFEALGSS 137
Query: 108 LGLRAHVI-G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
+G+++ VI G Q A P ++I TP +L+ L+ + NL +++L
Sbjct: 138 IGVQSAVIVGGIDSMSQSLALAKKP------HIIIATPGRLIDHLE-NTKGFNLRALKYL 190
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLKRRVQI 221
++DE+D++ F ++ I P ++ FSAT T+ V K R LK V+
Sbjct: 191 VMDEADRILNM---DFETEVDKILKVI--PRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245
Query: 222 NV 223
V
Sbjct: 246 AV 247
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 114 bits (289), Expect = 1e-31
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGF------RAVIVCPTRELAKQTYNE 100
R I ACA TGSGKTAAFLIPII+ L + + + +I+ PTRELA Q +E
Sbjct: 60 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119
Query: 101 TVRLSEGLGLRAHVI----GKIQQAAE-KFGPRSAQKFDVLITTPNKLVYLLQMDPPALN 155
+ + S LR+ V+ Q E + G +L+ TP +LV ++ ++
Sbjct: 120 SQKFSLNTPLRSCVVYGGADTHSQIREVQMGC------HLLVATPGRLVDFIEK--NKIS 171
Query: 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKR---GMFSATHTEDVAKWCR 212
L +++++DE+D++ + GF Q+ I + P+ MFSAT +++ K
Sbjct: 172 LEFCKYIVLDEADRMLDM---GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 228
Query: 213 RKLKRRVQINVG 224
L + + VG
Sbjct: 229 DFLYNYIFMTVG 240
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 115 bits (291), Expect = 1e-30
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 49 GRQIFACAPTGSGKTAAFLIPII-HSLRGPKNLGF---RAVIVCPTRELAKQTYNETVRL 104
GR + ACA TGSGKTAAFL+PI+ L P L + VIV PTRELA Q +NE +
Sbjct: 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152
Query: 105 SEGLGLRAHVI----GKIQQAAE-KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANV 159
+ L+ ++ Q G V+I TP +L+ + + +
Sbjct: 153 AFESYLKIGIVYGGTSFRHQNECITRGC------HVVIATPGRLLDFVDR--TFITFEDT 204
Query: 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKR--GMFSATHTEDVAKWCRRKLKR 217
++++DE+D++ + GF + + I + + MFSAT E++ + LK
Sbjct: 205 RFVVLDEADRMLDM---GFSEDMRRIMTHVTMRP-EHQTLMFSATFPEEIQRMAGEFLKN 260
Query: 218 RVQINVG 224
V + +G
Sbjct: 261 YVFVAIG 267
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 108 bits (272), Expect = 3e-29
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 49 GRQIFACAPTGSGKTAAFLIP-IIHSLRGP---KNLGFRAVIVCPTRELAKQTYNETVRL 104
G + A TGSGKT ++L+P I+H P + G +++ PTRELA+Q
Sbjct: 66 GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125
Query: 105 SEGLGLRAHVI----GKIQQAAE-KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANV 159
L++ I K Q + + G ++ I TP +L+ L+ NL
Sbjct: 126 CRACRLKSTCIYGGAPKGPQIRDLERGV------EICIATPGRLIDFLECG--KTNLRRT 177
Query: 160 EWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRV 219
+L++DE+D++ + GF Q+ I P+ + M+SAT ++V + LK +
Sbjct: 178 TYLVLDEADRMLDM---GFEPQIRKIVDQIR-PDRQTLMWSATWPKEVRQLAEDFLKDYI 233
Query: 220 QINVG 224
IN+G
Sbjct: 234 HINIG 238
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 110 bits (278), Expect = 7e-29
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 49 GRQIFACAPTGSGKTAAFLIPII-HSLRGPKNLGFR----------------AVIVCPTR 91
R + ACA TGSGKTAAFL+PI+ R ++++ PTR
Sbjct: 52 KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111
Query: 92 ELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFG--PRSAQKF------DVLITTPNKL 143
ELA Q Y E + S +R V+ +G Q +L+ TP +L
Sbjct: 112 ELAVQIYEEARKFSYRSRVRPCVV---------YGGADIGQQIRDLERGCHLLVATPGRL 162
Query: 144 VYLLQMDPPALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACS-GPNLKR--GMFS 200
V +++ + L ++L++DE+D++ + GF Q+ I + P R MFS
Sbjct: 163 VDMMER--GKIGLDFCKYLVLDEADRMLDM---GFEPQIRRIVEQDTMPPKGVRHTMMFS 217
Query: 201 ATHTEDVAKWCRRKLKRRVQINVG 224
AT +++ R L + + VG
Sbjct: 218 ATFPKEIQMLARDFLDEYIFLAVG 241
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 105 bits (264), Expect = 7e-27
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR I A A G+GKTAAF+IP + ++ PK +A+I+ PTRELA QT L +
Sbjct: 58 GRDILARAKNGTGKTAAFVIPTLEKVK-PKLNKIQALIMVPTRELALQTSQVVRTLGKHC 116
Query: 109 GLRAHVI-G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
G+ V G + +L+ TP +++ L +L++ I
Sbjct: 117 GISCMVTTGGTNLRDDILRLNETV------HILVGTPGRVLDLASRK--VADLSDCSLFI 168
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE+DK+ R F+ + I + P + +FSAT V ++ + L + +IN+
Sbjct: 169 MDEADKMLS---RDFKTIIEQILSFLP-PTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 224
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 100 bits (251), Expect = 3e-26
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 49 GRQIFACAPTGSGKTAAFLIP-IIHSLRGPKNL----GFRAVIVCPTRELAKQTYNETVR 103
G + A TG+GKT ++L+P IH P + G +++ PTRELA E +
Sbjct: 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116
Query: 104 LSEGLGLRAHVI----GKIQQAAE-KFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLAN 158
S GL++ I + Q + G D++I TP +L L + ++NL +
Sbjct: 117 YSY-KGLKSICIYGGRNRNGQIEDISKGV------DIIIATPGRLNDLQMNN--SVNLRS 167
Query: 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRR 218
+ +L++DE+DK+ + F Q+ I P+ + M SAT + V + LK
Sbjct: 168 ITYLVIDEADKMLDM---EFEPQIRKILLDVR-PDRQTVMTSATWPDTVRQLALSYLKDP 223
Query: 219 VQINV 223
+ + V
Sbjct: 224 MIVYV 228
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 102 bits (257), Expect = 1e-25
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 29/199 (14%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSL---RGPKNLGFRAVIVCPTRELAKQTYNET 101
LS + A A TG+GKT AFLIPI L + +AVIV PTR+LA Q E
Sbjct: 107 LSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 166
Query: 102 VRLSEG----LGLRAH-VIG----KIQQAA-EKFGPRSAQKFDVLITTPNKLVYLLQMDP 151
++ + ++G + K P +++I TP +L+ +L+
Sbjct: 167 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP------NIVIATPGRLIDVLE-KY 219
Query: 152 PALNLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAA-----CSGPNLKRGM-FSATHTE 205
V++ ++DE+D+L E GFRD L I + + + FSAT +
Sbjct: 220 SNKFFRFVDYKVLDEADRLLEI---GFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276
Query: 206 DVAKWCRRKLKRRVQINVG 224
V K + ++ + +
Sbjct: 277 KVQKLANNIMNKKECLFLD 295
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 100 bits (250), Expect = 1e-24
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSL---RGPKNLGFRAVIVCPTRELAKQTYNET 101
LS + A A TG+GKT AFLIPI L + +AVIV PTR+LA Q E
Sbjct: 56 LSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115
Query: 102 VRLSEG----LGLRAH-VIG--KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPAL 154
++ + ++G + A K ++I TP +L+ +L+
Sbjct: 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN---IVIATPGRLIDVLE-KYSNK 171
Query: 155 NLANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRG------MFSATHTEDVA 208
V++ ++DE+D+L E GFRD L I + N K +FSAT + V
Sbjct: 172 FFRFVDYKVLDEADRLLEI---GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ 228
Query: 209 KWCRRKLKRRVQINVG 224
K + ++ + +
Sbjct: 229 KLANNIMNKKECLFLD 244
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 96.1 bits (240), Expect = 2e-24
Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 13/178 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKTA F I I+ L + +A+++ PTRELA+Q + L + +
Sbjct: 67 GYDVIAQAQSGTGKTATFAISILQQLE-IEFKETQALVLAPTRELAQQIQKVILALGDYM 125
Query: 109 GLRAH-VIG--KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVD 165
G H IG ++ +K + +++ TP ++ +L L+ ++ ++D
Sbjct: 126 GATCHACIGGTNVRNEMQKLQAEAPH---IVVGTPGRVFDMLNRR--YLSPKWIKMFVLD 180
Query: 166 ESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
E+D++ RGF+DQ+ I+ + +++ + SAT DV + ++ ++ ++I V
Sbjct: 181 EADEMLS---RGFKDQIYEIFQKLN-TSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 95.8 bits (239), Expect = 2e-24
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A +G+GKT F + SL +NL + +I+ PTRE+A Q ++ + +
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKM 119
Query: 109 -GLRAHVI-G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
GL HV G + +K + + +P ++ L+++D LN ++
Sbjct: 120 EGLECHVFIGGTPLSQDK-------TRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLF 170
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
I+DE+DKL E G F++Q+ IY++ + + SAT+ E +A + ++ +
Sbjct: 171 ILDEADKLLEEG--SFQEQINWIYSSLP-ASKQMLAVSATYPEFLANALTKYMRDPTFVR 227
Query: 223 V 223
+
Sbjct: 228 L 228
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 93.8 bits (234), Expect = 7e-24
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
LG + A +G GKTA F++ + L P +++C TRELA Q E R S+
Sbjct: 50 LGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTRELAFQISKEYERFSKY 108
Query: 108 L-GLRAHVI-G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
+ ++ V G K + K +++ TP +++ L + +LNL +++
Sbjct: 109 MPNVKVAVFFGGLSIKKDEEVLKKNCP-----HIVVGTPGRILALARNK--SLNLKHIKH 161
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKR-GMFSATHTEDVAKWCRRKLKRRVQ 220
I+DE DK+ E R + I+ P+ K+ MFSAT ++++ CR+ ++ ++
Sbjct: 162 FILDECDKMLEQ--LDMRRDVQEIFRMT--PHEKQVMMFSATLSKEIRPVCRKFMQDPME 217
Query: 221 INV 223
I V
Sbjct: 218 IFV 220
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 97.3 bits (243), Expect = 7e-24
Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 18/180 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR + A + +G+GKTA F I ++ L + +A+I+ PTRELA Q + L + +
Sbjct: 74 GRDVIAQSQSGTGKTATFSISVLQCLD-IQVRETQALILAPTRELAVQIQKGLLALGDYM 132
Query: 109 GLRAH-VIG----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
++ H IG +G V+ TP ++ +++ +L ++ L+
Sbjct: 133 NVQCHACIGGTNVGEDIRKLDYGQ------HVVAGTPGRVFDMIRRR--SLRTRAIKMLV 184
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE+D++ +GF++Q+ +Y P + + SAT ++ + + + ++I V
Sbjct: 185 LDEADEMLN---KGFKEQIYDVYRYLP-PATQVVLISATLPHEILEMTNKFMTDPIRILV 240
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 93.0 bits (232), Expect = 2e-23
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKT F I + + +A+++ PTRELA Q + L+ +
Sbjct: 51 GHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALMLAPTRELALQIQKVVMALAFHM 109
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
++ H E + +++ TP ++ +Q ++ I+DE+D
Sbjct: 110 DIKVHACIGGTSFVEDA--EGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEAD 165
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
++ GF++Q+ I+ P + + SAT DV + + ++ V+I V
Sbjct: 166 EMLS---SGFKEQIYQIFTLLP-PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 96.5 bits (241), Expect = 2e-23
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
LS R + + +G+GKTAAF + ++ + +A+ + P+RELA+Q + +
Sbjct: 154 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVD-ASVPKPQAICLAPSRELARQIMDVVTEM 212
Query: 105 SEGLGLRAH-VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
+ ++ I K ++I TP ++ L++ L+ +++ +
Sbjct: 213 GKYTEVKTAFGIKDSVPKGAKIDA------QIVIGTPGTVMDLMKRR--QLDARDIKVFV 264
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE+D + + +G DQ I N + +FSAT +E V K+ R +I +
Sbjct: 265 LDEADNMLD--QQGLGDQSMRIKHLLP-RNTQIVLFSATFSERVEKYAERFAPNANEIRL 321
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 91.4 bits (228), Expect = 4e-23
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR I A A G+GK+ A+LIP++ L K +A+++ PTRELA Q +++S+ +
Sbjct: 40 GRDILARAKNGTGKSGAYLIPLLERLD-LKKDNIQAMVIVPTRELALQVSQICIQVSKHM 98
Query: 109 -GLRAHVI-G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
G + G + V+I TP +++ L++ + +V+ +
Sbjct: 99 GGAKVMATTGGTNLRDDIMRLDDTV------HVVIATPGRILDLIKKG--VAKVDHVQMI 150
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
++DE+DKL + F + I N + ++SAT V K+ L++ +IN
Sbjct: 151 VLDEADKLLS---QDFVQIMEDIILTLP-KNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 91.5 bits (228), Expect = 5e-23
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 24/185 (12%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + + TG+GKT A+L+PI+ ++ P+ +AVI PTRELA Q Y+ET+++++
Sbjct: 41 GESMVGQSQTGTGKTHAYLLPIMEKIK-PERAEVQAVITAPTRELATQIYHETLKITKFC 99
Query: 109 GLRAHV----------IGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLAN 158
+ K P ++I TP ++ ++ AL++
Sbjct: 100 PKDRMIVARCLIGGTDKQK-ALEKLNVQP------HIVIGTPGRINDFIREQ--ALDVHT 150
Query: 159 VEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRR 218
L+VDE+D + + GF + I A +L+ +FSAT E + + ++ ++
Sbjct: 151 AHILVVDEADLMLD---MGFITDVDQIAARMP-KDLQMLVFSATIPEKLKPFLKKYMENP 206
Query: 219 VQINV 223
++V
Sbjct: 207 TFVHV 211
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 94.6 bits (236), Expect = 5e-23
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
LG + A +G GKTA F++ + L P +++C TRELA Q E R S+
Sbjct: 44 LGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTRELAFQISKEYERFSKY 102
Query: 108 L-GLRAHVI--GK-IQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
+ ++ V G I++ E +++ TP +++ L + +LNL +++ I
Sbjct: 103 MPNVKVAVFFGGLSIKKDEEVLKKNCPH---IVVGTPGRILALARNK--SLNLKHIKHFI 157
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE DK+ E R + I+ + MFSAT ++++ CR+ ++ ++I V
Sbjct: 158 LDECDKMLEQ--LDMRRDVQEIFRMTP-HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 94.1 bits (235), Expect = 7e-23
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKT F I + + +A+++ PTRELA Q + L+ +
Sbjct: 58 GHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALMLAPTRELALQIQKVVMALAFHM 116
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
++ H E + +++ TP ++ +Q ++ I+DE+D
Sbjct: 117 DIKVHACIGGTSFVEDA--EGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEAD 172
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
++ GF++Q+ I+ P + + SAT DV + + ++ V+I V
Sbjct: 173 EMLS---SGFKEQIYQIFTLLP-PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 93.4 bits (233), Expect = 2e-22
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKTA F I I+ + +A+++ PTRELA+Q + L + +
Sbjct: 77 GYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQIQKVVMALGDYM 135
Query: 109 GLRAHV------IGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
G H + Q + P +++ TP ++ +L L+ ++
Sbjct: 136 GASCHACIGGTNVRAEVQKLQMEAP------HIIVGTPGRVFDMLNRR--YLSPKYIKMF 187
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
++DE+D++ RGF+DQ+ I+ + N + + SAT DV + ++ ++ ++I
Sbjct: 188 VLDEADEMLS---RGFKDQIYDIFQKLN-SNTQVVLLSATMPSDVLEVTKKFMRDPIRIL 243
Query: 223 V 223
V
Sbjct: 244 V 244
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 88.3 bits (220), Expect = 6e-21
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + A TGSGKTAA+ IPI+ G ++++V PTREL +Q + + +
Sbjct: 31 GKNVVVRAKTGSGKTAAYAIPILE--LGM-----KSLVVTPTRELTRQVASHIRDIGRYM 83
Query: 109 GLRAHVI--GKIQQAAEKFGP--RSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIV 164
+ + G + + D+++ TP +L+ L ++L++ E +I+
Sbjct: 84 DTKVAEVYGG------MPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVII 135
Query: 165 DESDKLFEAGVRGFRDQLAVIYAACSGPNLKR-GMFSATHTEDVAKWCRRKLKRRVQINV 223
DE+D +FE GF D + +I A N K G+FSAT E++ K + + +I
Sbjct: 136 DEADLMFEM---GFIDDIKIILAQT--SNRKITGLFSATIPEEIRKVVKDFITNYEEIEA 190
Query: 224 GLR 226
+
Sbjct: 191 CIG 193
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 85.7 bits (213), Expect = 6e-21
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--RGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
G+ + A TG+GKT AF +PI L + RA+++ PTRELA Q +E ++
Sbjct: 38 GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97
Query: 107 GLGLRAHVIG----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWL 162
L + A V G Q+ A G D ++ TP + + L+ L+L+ VE
Sbjct: 98 HLKVVA-VYGGTGYGKQKEALLRGA------DAVVATPGRALDYLRQG--VLDLSRVEVA 148
Query: 163 IVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGM-FSATHTEDVAKWCRRKLKRRVQI 221
++DE+D++ GF +++ + +A P ++ + FSAT + R +K V I
Sbjct: 149 VLDEADEMLSM---GFEEEVEALLSAT--PPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
Query: 222 NV 223
NV
Sbjct: 204 NV 205
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 85.9 bits (213), Expect = 3e-20
Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
L+ + + A + +G+GKTAAF++ ++ + P N + + + PT ELA QT ++
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCLSPTYELALQTGKVIEQM 185
Query: 105 SEGL-GLRAHVI--GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEW 161
+ L+ G + +K ++I TP ++ ++ ++
Sbjct: 186 GKFYPELKLAYAVRGNKLERGQKISE------QIVIGTPGTVLDWCS-KLKFIDPKKIKV 238
Query: 162 LIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQI 221
++DE+D + +G +DQ I N + +FSAT + V K+ ++ + I
Sbjct: 239 FVLDEADVMIAT--QGHQDQSIRIQRMLP-RNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
Query: 222 NV 223
+
Sbjct: 296 KL 297
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 85.4 bits (212), Expect = 1e-19
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
L+ + + A + +G+GKTAAF++ ++ + P N + + + PT ELA QT ++
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCLSPTYELALQTGKVIEQM 185
Query: 105 SEGL-GLRAHVI--GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD----PPALNLA 157
+ L+ G + +K ++I TP + +D ++
Sbjct: 186 GKFYPELKLAYAVRGNKLERGQKISE------QIVIGTPGTV-----LDWCSKLKFIDPK 234
Query: 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKR 217
++ ++DE+D + +G +DQ I N + +FSAT + V K+ ++ +
Sbjct: 235 KIKVFVLDEADVMIAT--QGHQDQSIRIQRMLP-RNCQMLLFSATFEDSVWKFAQKVVPD 291
Query: 218 RVQINV 223
I +
Sbjct: 292 PNVIKL 297
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 85.3 bits (212), Expect = 1e-19
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
L+ + + A + +G+GKTAAF++ ++ + P N + + + PT ELA QT ++
Sbjct: 60 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCLSPTYELALQTGKVIEQM 118
Query: 105 SEGL-GLRAHVI--GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMD----PPALNLA 157
+ L+ G + +K ++I TP + +D ++
Sbjct: 119 GKFYPELKLAYAVRGNKLERGQKISE------QIVIGTPGTV-----LDWCSKLKFIDPK 167
Query: 158 NVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKR 217
++ ++DE+D + +G +DQ I N + +FSAT + V K+ ++ +
Sbjct: 168 KIKVFVLDEADVMIAT--QGHQDQSIRIQRMLP-RNCQMLLFSATFEDSVWKFAQKVVPD 224
Query: 218 RVQINV 223
I +
Sbjct: 225 PNVIKL 230
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 84.5 bits (210), Expect = 2e-19
Identities = 35/180 (19%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 45 LSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
L R + A + +G+GKTAAF + ++ + P++ +A+ + P+RELA+QT +
Sbjct: 40 LHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN-PEDASPQAICLAPSRELARQTLEVVQEM 98
Query: 105 SEGLGLRAH-VIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
+ + + ++ + ++ V++ TP ++ L++ + L ++ +
Sbjct: 99 GKFTKITSQLIVPDSFEKNKQINA------QVIVGTPGTVLDLMRRK--LMQLQKIKIFV 150
Query: 164 VDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+DE+D + + +G DQ + + + +FSAT + V ++ ++ + + +
Sbjct: 151 LDEADNMLDQ--QGLGDQCIRVKRFLP-KDTQLVLFSATFADAVRQYAKKIVPNANTLEL 207
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 78.0 bits (193), Expect = 4e-17
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 56 APTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115
A TGSGKTA+F IP+I + + A+I+ PTRELA Q +E L L+ I
Sbjct: 51 ARTGSGKTASFAIPLIELVNENNGI--EAIILTPTRELAIQVADEIESLKGNKNLKIAKI 108
Query: 116 -G----KIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESDKL 170
G Q A K ++++ TP +++ + LNL NV++ I+DE+D++
Sbjct: 109 YGGKAIYPQIKALKNA-------NIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEM 159
Query: 171 FEAGVRGFRDQLAVIYAACSGPNLKR-GMFSATHTEDVAKWCRRKLKRRVQINV 223
GF + I AC KR +FSAT ++ ++ + I
Sbjct: 160 LNM---GFIKDVEKILNAC--NKDKRILLFSATMPREILNLAKKYMGDYSFIKA 208
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 63.7 bits (154), Expect = 5e-12
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 16/178 (8%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
PTG GKT ++ + L + +++ PT+ L Q
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGG---KVLMLAPTKPLVLQHAES---FRRL 75
Query: 108 LGLRAHVIGKIQ-QAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
L I + + + + ++ + V++ TP + L ++L +V ++ DE
Sbjct: 76 FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDE 133
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATH---TEDVAKWCRRKLKRRVQI 221
+ + G + P + +A+ E + + ++
Sbjct: 134 AHRA--VGNYAYVFIAREYKRQAKNPLV--IGLTASPGSTPEKIMEVINNLGIEHIEY 187
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 62.9 bits (153), Expect = 9e-12
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ PT SGKT I ++H + G +AV + P + LA++ + E E +
Sbjct: 39 GKNALISIPTASGKTLIAEIAMVHRIL---TQGGKAVYIVPLKALAEEKFQEFQDW-EKI 94
Query: 109 GLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
GLR A G K+D++I T K LL+ + +V+ L+ DE
Sbjct: 95 GLRVAMATGDYDS-----KDEWLGKYDIIIATAEKFDSLLRHGSSWIK--DVKILVADEI 147
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTEDVAKWCRRKL 215
+ RG ++ + + + G+ SAT + E++A+W +L
Sbjct: 148 HLIGSRD-RGATLEVILAHMLGKAQII--GL-SATIGNPEELAEWLNAEL 193
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 60.5 bits (147), Expect = 6e-11
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G ++ +PTGSGKT + II L G +A+ V P R L + Y +
Sbjct: 46 GNRLLLTSPTGSGKTLIAEMGIISFL---LKNGGKAIYVTPLRALTNEKYLTFKDWEL-I 101
Query: 109 GLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
G + A G + +D++ITT KL L + P LN V + ++DE
Sbjct: 102 GFKVAMTSGDYDT-----DDAWLKNYDIIITTYEKLDSLWRHRPEWLNE--VNYFVLDEL 154
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKR--GMFSAT--HTEDVAKW 210
L + RG V+ + + + SAT + + +AKW
Sbjct: 155 HYLNDPE-RG-----PVVESVTIRAKRRNLLAL-SATISNYKQIAKW 194
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 57.9 bits (140), Expect = 1e-10
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 54 ACAPTGSGKT--AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111
C PTGSGKT A ++ + + + +++ L +Q + + + R
Sbjct: 53 ICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 112
Query: 112 AHVIGKIQQAAEKFGPRSAQKFDVLITTP----NKLVYLLQMDPPALNLANVEWLIVDE 166
+ Q F P + D++I+T N L+ L + + L++ +I+DE
Sbjct: 113 VIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDE 170
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 56.0 bits (135), Expect = 2e-09
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + PT +GKT + ++ G +++ V P R LA + Y + E +
Sbjct: 40 GKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYESFKKW-EKI 94
Query: 109 GLR-AHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
GLR G + D+++TT K L++ + V L+VDE
Sbjct: 95 GLRIGISTGDYE-----SRDEHLGDCDIIVTTSEKADSLIRNRASWIK--AVSCLVVDE 146
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 54.1 bits (129), Expect = 7e-09
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLR-GPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
G+ CAPTG GKT L+ H L+ P + V + +Q R E
Sbjct: 18 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77
Query: 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQ 148
LG I + + D++I TP LV L
Sbjct: 78 RLGYNIASISGATSDSVSVQ-HIIEDNDIIILTPQILVNNLN 118
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 51.6 bits (124), Expect = 6e-08
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 29 SNSIFKHFEPHFTITYLSPLGRQI-----------FA-CAPTGSGKTAAFLIPIIHSLRG 76
+ + K F F P Q FA APTG GKT+ F + SL
Sbjct: 39 EDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTS-FGL--AMSLFL 95
Query: 77 PKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI-----GKIQQAAEKFGPRSAQ 131
G R ++ PT L Q + +E G+ + G+I + ++ ++ +
Sbjct: 96 ALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR 154
Query: 132 KFDVLITTPNKLVYLLQ-MDPPALNLANVEWLIVDESDKLFEAG 174
F ++ITT +L + L + +++ VD+ D + +A
Sbjct: 155 NFKIVITTTQ---FLSKHYR----ELGHFDFIFVDDVDAILKAS 191
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 50.4 bits (119), Expect = 2e-07
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ CAPTGSGKT ++ H + P + V + + +Q N E
Sbjct: 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
G I + + + D+++ TP LV + D +L+ +I DE
Sbjct: 323 QGYSVQGISGENFSNVSVE-KVIEDSDIIVVTPQILVNSFE-DGTLTSLSIFTLMIFDEC 380
Query: 168 DK 169
Sbjct: 381 HN 382
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 49.9 bits (118), Expect = 2e-07
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLR-GPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ CAPTGSGKT ++ H + P + V + + +Q N E
Sbjct: 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
G I + + + D+++ TP LV + D +L+ +I DE
Sbjct: 82 QGYSVQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFE-DGTLTSLSIFTLMIFDE 138
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 49.8 bits (118), Expect = 2e-07
Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 24/175 (13%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A T +GKT I SL+ R + P + L+ Q Y E + +
Sbjct: 199 GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLAEFGDV 254
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
GL + G I + L+ T L +L + V W+I DE
Sbjct: 255 GL---MTGDITINPDA---------GCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEVH 300
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTEDVAKWCRRKLKRRVQI 221
+ + RG + +I ++ SAT + + A+W + + I
Sbjct: 301 YMRDKE-RGVVWEETIILLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHI 351
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 49.8 bits (118), Expect = 3e-07
Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 24/175 (13%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A T +GKT I SL+ R + P + L+ Q Y E + +
Sbjct: 101 GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLAEFGDV 156
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
GL + G I + L+ T L +L + V W+I DE
Sbjct: 157 GL---MTGDITINPDA---------GCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEVH 202
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTEDVAKWCRRKLKRRVQI 221
+ + RG + +I ++ SAT + + A+W + + I
Sbjct: 203 YMRDKE-RGVVWEETIILLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHI 253
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 49.2 bits (116), Expect = 4e-07
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLR-GPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ CAPTG GKT L+ H L+ P+ + V + +Q + + E
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
G R I + + D++I TP LV L+ +L+ +I DE
Sbjct: 88 HGYRVTGISGATAENVPVE-QIVENNDIIILTPQILVNNLKKG-TIPSLSIFTLMIFDEC 145
Query: 168 DK 169
Sbjct: 146 HN 147
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 45.3 bits (106), Expect = 8e-06
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRG-PKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
G+ CAPTGSGKT ++ H + P + V + + +Q N E
Sbjct: 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
G I + D+++ TP LV + D +L+ +I DE
Sbjct: 323 QGYSVQGISGENFSNVSVEKVIEDS-DIIVVTPQILVNSFE-DGTLTSLSIFTLMIFDEC 380
Query: 168 DK 169
Sbjct: 381 HN 382
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 44.8 bits (106), Expect = 8e-06
Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%)
Query: 49 GRQIFACAPTGSGKT--AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSE 106
R PTGSGKT A I L +IV PT LA+Q E
Sbjct: 109 KRGCI-VLPTGSGKTHVAMAAI---------NELSTPTLIVVPTLALAEQWKERLGIFGE 158
Query: 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+G +F R + + ++T + + L LI DE
Sbjct: 159 ------EYVG-------EFSGRIKELKPLTVSTYDSAYVNAEKLGNRFML-----LIFDE 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 1e-05
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 51/210 (24%)
Query: 23 TTLA--VVSNSIFKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNL 80
T +A V + + F I +L+ L + ++ ++ + L
Sbjct: 164 TWVALDVCLSYKVQCKMD-FKIFWLN-LKNC----------NSPETVLEML------QKL 205
Query: 81 GFRAVIVCPTRELAKQTYNETVRLSEG-LGLRAHVIGKIQQAAEKFGPRS---------- 129
++ I + + N +R+ LR + K
Sbjct: 206 LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLVLLNVQNA 256
Query: 130 --AQKFD----VLITTPNKLV--YLLQMDPPALNLANVEW-LIVDESDKLFEAGVRGFRD 180
F+ +L+TT K V +L ++L + L DE L +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 181 QLAVIYAACSGPNLKRGMFSATHTEDVAKW 210
L + + + + + + +A W
Sbjct: 317 DLPR--EVLTTNPRRLSIIAESIRDGLATW 344
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 42.0 bits (99), Expect = 8e-05
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
+ +PTGSGKT L + K + + + T +Q E LS +
Sbjct: 22 SYGVALESPTGSGKTIMALKSALQYSSERKL---KVLYLVRTNSQEEQVIKELRSLSSTM 78
Query: 109 GLRA 112
+RA
Sbjct: 79 KIRA 82
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 41.0 bits (96), Expect = 1e-04
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 18/118 (15%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G G+GKT FL P I L R +++ PTR + + L
Sbjct: 8 GMTTVLDFHPGAGKTRRFL-PQI--LAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 64
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+A + + + L Y + + N E +I+DE
Sbjct: 65 HTQAFSA------------HGSGREVIDAMCHATLTYRMLEPT---RVVNWEVIIMDE 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 52/326 (15%), Positives = 82/326 (25%), Gaps = 129/326 (39%)
Query: 12 FTIGFVISII----VTTLAVVSNSIFKHFEPHFTITYLSPLGRQI--FACAPTGSGKT-- 63
F +G+V S++ V V N FE YL G I A T
Sbjct: 64 F-LGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYLE--GNDIHALAAKLLQENDTTL 116
Query: 64 ------------AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAK-------QTYNETVRL 104
A + + L FRAV A+ Q +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSAL-FRAV----GEGNAQLVAIFGGQGNTDDY-F 170
Query: 105 SEGLGLR-------AHVIGKIQQAAEKFGPRSAQK----------FDVL--ITTPNK--- 142
E LR V I+ +AE ++L + P+
Sbjct: 171 EE---LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 143 ------------LVYLLQM------------DPPALN------LANVEWLIV-------D 165
L+ ++Q+ P L + + L+ D
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 166 ESDKLFEAGVR--------GFRDQLAVIYAACSGP------NLKRG------MFSAT--- 202
+ F + + G R A Y S P +L+ M S +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 203 --HTEDVAKWCRRKLKRRVQINVGLR 226
+D L Q+ + L
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 38.5 bits (89), Expect = 0.001
Identities = 45/267 (16%), Positives = 74/267 (27%), Gaps = 94/267 (35%)
Query: 18 IS---IIVTTLAVVSNSIFKHFEPHFTITYLSPLG------RQIFACAPTGSGK---TAA 65
IS I V LA H+ +T LG R A TG + TA
Sbjct: 236 ISCPLIGVIQLA------------HYVVT-AKLLGFTPGELRSYLKGA-TGHSQGLVTAV 281
Query: 66 ----------FLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL------- 108
F + + ++ +G R P L +++ +EG+
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 109 -GL-RAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLV--------YLLQMD------PP 152
L + V + + P Q L+ LV Y L + P
Sbjct: 342 SNLTQEQVQDYVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 153 ALN----------------------------LANVEWLIVDESDKLFEAGVRGFRDQLAV 184
L+ L LI + L + V + +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD---LVKNNVSFNAKDIQI 457
Query: 185 -IYAACSGPNLKRGMFSATHTEDVAKW 210
+Y G +L R + S + +E +
Sbjct: 458 PVYDTFDGSDL-RVL-SGSISERIVDC 482
Score = 31.6 bits (71), Expect = 0.27
Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 49/153 (32%)
Query: 25 LAVVSNSIFKHFEPHFTITYLSPLGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLG-FR 83
L ++ + F+ + I P FA G HS LG +
Sbjct: 1736 LTLMEKAAFEDLKSKGLI----PAD-ATFA----G------------HS------LGEYA 1768
Query: 84 AVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKL 143
A + + + V + + R G Q A + ++ P ++
Sbjct: 1769 A-LASLADVM---SIESLVEV---VFYR----GMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 144 VYLLQMDPPALNLANVEWL---IVDESDKLFEA 173
+ + ++++ + + L E
Sbjct: 1818 A-------ASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 29.2 bits (65), Expect = 1.2
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 58/178 (32%)
Query: 40 FTITYLSPLGRQIFACAPTGSGKTAAFLIP-IIHS----LRGPKNLGFRAVIVCPTRELA 94
T+++ GS + L+P L+ F ++ PT A
Sbjct: 9 LTLSH--------------GSLEHV-LLVPTASFFIASQLQE----QFNKILPEPTEGFA 49
Query: 95 KQTYNETVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLV-------YLL 147
+E +E L +G + E P +FD ++ L YL
Sbjct: 50 AD--DEPTTPAE---LVGKFLGYVSSLVE---PSKVGQFDQVL----NLCLTEFENCYLE 97
Query: 148 QMDPPALNLANVEWLIVDESDKLFEAG--VRGFRDQLAVIYAAC--SGPNLKRGMFSA 201
D AL L+ + L + ++ + A + + SA
Sbjct: 98 GNDIHAL----AAKLLQENDTTLVKTKELIKNY-------ITARIMAKRPFDKKSNSA 144
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 38.4 bits (90), Expect = 0.001
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 59 GSGKT---AAFLIPIIHSLRGPKNLGFRAVIVCPT-------RELAKQTYNETVRLSEGL 108
G GKT + ++ K + ++V P+ E+ K ++
Sbjct: 89 GLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDG 148
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVY-LLQMDPPALNLANVEWLIVDE 166
G + + K+ + G R +LI + Y ++ L+ V +I DE
Sbjct: 149 GSKDEIDSKLVNFISQQGMRI--PTPILIIS-----YETFRLHAEVLHKGKVGLVICDE 200
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 22/47 (46%)
Query: 115 IGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNL-ANVE 160
+ K+Q + + + SA PAL + A +E
Sbjct: 22 LKKLQASLKLYADDSA---------------------PALAIKATME 47
Score = 29.1 bits (64), Expect = 0.81
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 12/34 (35%)
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
KL +A ++ +YA S P L AT
Sbjct: 24 KL-QASLK--------LYADDSAPALA---IKAT 45
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 36.6 bits (85), Expect = 0.004
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 33/116 (28%)
Query: 55 CAPTGSGKT--AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112
PTGSGKT A I L +IV PT LA+Q E
Sbjct: 114 VLPTGSGKTHVAMAAI---------NELSTPTLIVVPTLALAEQWKERLGIFGE------ 158
Query: 113 HVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEW--LIVDE 166
+G+ ++ P + ++T + LI DE
Sbjct: 159 EYVGEFSGRIKELKP-------LTVST-------YDSAYVNAEKLGNRFMLLIFDE 200
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 36.4 bits (84), Expect = 0.005
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
R + TG+GK+ L + ++ G R VIV P ++ + + +
Sbjct: 54 RHLLVNGATGTGKS-VLLRELAYTGL---LRGDRMVIVDPNGDMLSKFGRDKDII 104
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 36.5 bits (84), Expect = 0.006
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
+ APTGSGKT L+ + + + V T Y + ++ E
Sbjct: 22 NFLVALNAPTGSGKTLFSLLVSLEVKP-------KVLFVVRTHNEFYPIYRDLTKIREKR 74
Query: 109 GLRAHVIG 116
+ +
Sbjct: 75 NITFSFLV 82
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 33.8 bits (77), Expect = 0.043
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + A G GKT + + + +I T Y + L
Sbjct: 26 GKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNA----KLL 74
Query: 109 GLRAHVIGKIQQ 120
GL+ +
Sbjct: 75 GLKTGFLIGKSA 86
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 32.1 bits (73), Expect = 0.14
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 56 APTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115
G+GKT L P I +R R +I+ PTR +A + LR I
Sbjct: 26 LHPGAGKTKRIL-PSI--VREALLRRLRTLILAPTRVVAAEMEEA---------LRGLPI 73
Query: 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
A + V + L + N +++DE
Sbjct: 74 RYQTPAVKSDHTGREI---VDLMCHATFTTRLLSSTR---VPNYNLIVMDE 118
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 32.1 bits (74), Expect = 0.14
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 42/122 (34%)
Query: 59 GSGKTA---AFLIPIIHSLRGPKNLGFRAVIVCPT-------RELAKQTYNETVRLSEGL 108
G GKT A +L ++CP EL+K
Sbjct: 66 GLGKTLQTIAVFSDAKKENELTPSL-----VICPLSVLKNWEEELSKFA----------P 110
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVY-LLQMDPPALNLANVEW--LIVD 165
LR V + + + + +D+++TT Y +L D L VEW +++D
Sbjct: 111 HLRFAVFHEDRSKIK------LEDYDIILTT-----YAVLLRD---TRLKEVEWKYIVID 156
Query: 166 ES 167
E+
Sbjct: 157 EA 158
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 31.9 bits (72), Expect = 0.16
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 56 APTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115
APTGSGK+ +P ++ +G ++ +++ P+ +S+ G+ ++
Sbjct: 239 APTGSGKSTK--VPAAYAAQG-----YKVLVLNPSVAATLGFGA---YMSKAHGIDPNI- 287
Query: 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLV---YLLQMDPPALNLANVEWLIVDESD 168
+ G R+ P L + + +I DE
Sbjct: 288 --------RTGVRTITT-----GAPVTYSTYGKFLADGGC--SGGAYDIIICDECH 328
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 31.0 bits (70), Expect = 0.34
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 56 APTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVI 115
G+GKT L ++ K R VI+ PTR +A + Y LR I
Sbjct: 9 LHPGAGKTRRVLPQLVRE--AVKKRL-RTVILAPTRVVASEMYEA---------LRGEPI 56
Query: 116 GKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+ A V + L + N I+DE
Sbjct: 57 RYMTPA---VQSERTGNEIVDFMCHSTFTMKLLQGV---RVPNYNLYIMDE 101
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.9 bits (70), Expect = 0.37
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 123 EKFGPRSAQKFDVLITTPNKLVY-LLQMDPPALNLANVEW--LIVDE 166
+ + KF+VL+TT Y + D L +++W + VDE
Sbjct: 336 PRAKGKKTMKFNVLLTT-----YEYILKDRAE--LGSIKWQFMAVDE 375
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 30.6 bits (69), Expect = 0.38
Identities = 24/119 (20%), Positives = 33/119 (27%), Gaps = 34/119 (28%)
Query: 56 APTGSGKT---AAFLIPIIHSLRGPKNLGFRAVIVC-PTR----ELAKQTYNETVRLSEG 107
GSGKT +I R V PTR E+A+ VR
Sbjct: 28 LHPGSGKTRKILPQIIKDAIQQRLR-------TAVLAPTRVVAAEMAEALRGLPVRYQTS 80
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
R H +I V + L + L + N ++DE
Sbjct: 81 AVQREHQGNEI----------------VDVMCHATLTHRLMSPN---RVPNYNLFVMDE 120
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 30.7 bits (70), Expect = 0.44
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 59 GSGKT--AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111
GSGKT A I L + GF+ + PT LA Q Y TV +
Sbjct: 399 GSGKTVVAQLAI-----LDNYEA-GFQTAFMVPTSILAIQHYRRTVESFSKFNIH 447
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA
binding protein; HET: DNA; 2.00A {Enterobacteria phage
T4} SCOP: c.37.1.23
Length = 282
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109
R+ PT +G++ + + L + + +I+ PT L Q ++ V
Sbjct: 129 RRRILNLPTSAGRSLIQALLARYYLENYE---GKILIIVPTTALTTQMADDFVDYRLFSH 185
Query: 110 LRAHVIG 116
IG
Sbjct: 186 AMIKKIG 192
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 1.8
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE---LAKQTYNETVRLSEG- 107
A G+GK+ ++ G R +I+ P RE + ++ + + G
Sbjct: 38 WTILAKPGAGKS-FTAKMLLLREYM---QGSRVIIIDPEREYKEMCRKLGGVWINCTGGE 93
Query: 108 -----LGLRAHVIGKIQQAAEKFGPRSAQKFDVLIT 138
L +R + + + F A L T
Sbjct: 94 GKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRT 129
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.7 bits (63), Expect = 1.8
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99
+ IF PT SGKT + + G V P + LA + +
Sbjct: 156 KIIFHSGPTNSGKTYHAIQKYFSAKSG--------VYCGPLKLLAHEIFE 197
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 28.2 bits (63), Expect = 2.3
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 56 APTGSGKT--AAFLIPIIHSLRGPKNLGFRAV---IVCPTRELAKQTYNE 100
TG+GKT A + + S R + +R + L ++
Sbjct: 205 MATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus,
VIZI enzymes involved in replication, ATP-binding, cell
membrane endosome; 1.65A {Chikungunya virus} PDB:
3gpo_A* 3gpq_A
Length = 168
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 54 ACAPTGSGK-TAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLR 111
+ P G+ K P+IH++ GP F Y E + LG+
Sbjct: 56 SATPVGTAKTVMCGTYPVIHAV-GPN---FSNYSESEGDRELAAAYREVAKEVTRLGVN 110
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Length = 221
Score = 27.7 bits (61), Expect = 3.0
Identities = 5/15 (33%), Positives = 5/15 (33%)
Query: 52 IFACAPTGSGKTAAF 66
AC P G F
Sbjct: 188 PMACTPERGGLKVTF 202
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 27.8 bits (62), Expect = 3.1
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 79 NLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAEK 124
N+G R I + E + +S+ G+ A ++G +++A +
Sbjct: 336 NMGHRMEIYIA-----PEHAEEVIGISKSFGIDAQIVGFVEEADKN 376
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.6 bits (61), Expect = 4.1
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 58 TGSGKT-----AAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRA 112
TGSGKT AA L + V ++L QT E R S +
Sbjct: 309 TGSGKTLTSFKAARLA-----TELDFI--DKVFFVVDRKDLDYQTMKEYQRFSPDSVNGS 361
Query: 113 ----HVIGKIQQAAEKFGPRSAQKFDVLI 137
+ + + K + QK + L+
Sbjct: 362 ENTAGLKRNLDKDDNKIIVTTIQKLNNLM 390
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Pectobacterium atrosepticum}
Length = 198
Score = 26.9 bits (59), Expect = 4.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 52 IFACAPTGSGKTAAF 66
+ C+P G +A F
Sbjct: 159 VMCCSPKRKGLSAEF 173
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 26.7 bits (58), Expect = 6.9
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 26/167 (15%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL--SE 106
G +F A T +GKT I + R + + P + L+ Q + +
Sbjct: 54 GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKETFDDV 109
Query: 107 GLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDE 166
+GL + A + LI T L +L + +VE++I DE
Sbjct: 110 NIGLITGDVQINPDA------------NCLIMTTEILRSMLYRGADLIR--DVEFVIFDE 155
Query: 167 SDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTEDVAKWC 211
+ + RG + +I ++K + SAT +T + A W
Sbjct: 156 VHYVNDQ-DRGVVWEEVIIMLP---QHVKFILLSATVPNTYEFANWI 198
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 26.4 bits (59), Expect = 9.2
Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 33/116 (28%)
Query: 52 IFACAPTGSGKTAAFLIPIIHSLRG-PKNLG--FRAV------IVCPTRELAKQT----- 97
+ A PTG+GKT H++ G P+ G RA+ E
Sbjct: 102 VLAYGPTGAGKT--------HTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTM 153
Query: 98 -----YNETVR-L----SEGLGLRAHVIGKIQ-QAAEKFGPRSAQKFDVLITTPNK 142
Y E V L S L +R G I + S F+ ++
Sbjct: 154 SYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASR 209
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 26.2 bits (58), Expect = 9.9
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 79 NLGFRAVIVCPTRELAKQTYNETVRLSEGLGLRAHVIGKIQQAAE 123
N+G R I + +++ + A +IG+++
Sbjct: 338 NMGHRLEIYTD-----AAHAEGMIAIAKKFNIEAKIIGRVEAPVA 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.415
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,450,175
Number of extensions: 205271
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 93
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)