RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12977
(226 letters)
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 74.6 bits (182), Expect = 7e-17
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 29/190 (15%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
A APTG GKT+ L + K R ++ PT L Q + +E
Sbjct: 58 KESFAATAPTGVGKTSFGLAMSLFLALKGK----RCYVIFPTSLLVIQAAETIRKYAEKA 113
Query: 109 GLRAHVIGKIQQAAEKFGPR-----SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLI 163
G+ + + + + F ++ITT L + L + +++
Sbjct: 114 GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIF 167
Query: 164 VDESDKLFEAGVR--------GFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKL 215
VD+ D + +A GF L + +AT + + +L
Sbjct: 168 VDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVG-EARGCLMVSTATAKKGK----KAEL 222
Query: 216 KRR-VQINVG 224
R+ + ++G
Sbjct: 223 FRQLLNFDIG 232
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 73.0 bits (178), Expect = 2e-16
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSL--------RGPKNLGFRAVIVCPTRELAKQTYNE 100
R I ACA TGSGKTAAFLIPII+ L R K + +I+ PTRELA Q +E
Sbjct: 58 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117
Query: 101 TVRLSEGLGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVE 160
+ + S LR+ V+ + +L+ TP +LV ++ + ++L +
Sbjct: 118 SQKFSLNTPLRSCVVYGGADTHSQIR-EVQMGCHLLVATPGRLVDFIEKN--KISLEFCK 174
Query: 161 WLIVDESDKLFEAGVRGFRDQLAVIYAACSGP---NLKRGMFSATHTEDVAKWCRRKLKR 217
++++DE+D++ + GF Q+ I + P N + MFSAT +++ K L
Sbjct: 175 YIVLDEADRMLD---MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYN 231
Query: 218 RVQINVG 224
+ + VG
Sbjct: 232 YIFMTVG 238
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 72.0 bits (176), Expect = 3e-16
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
I A A TGSGKTA+F IP+I +N G A+I+ PTRELA Q +E L
Sbjct: 42 EYNIVAQARTGSGKTASFAIPLIE--LVNENNGIEAIILTPTRELAIQVADEIESLKGNK 99
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
L+ I + + ++ + ++++ TP +++ + LNL NV++ I+DE+D
Sbjct: 100 NLKIAKIYGGKAIYPQI--KALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEAD 155
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
++ GF + I AC+ + + +FSAT ++ ++ + I
Sbjct: 156 EMLN---MGFIKDVEKILNACN-KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 71.5 bits (174), Expect = 2e-15
Identities = 29/167 (17%), Positives = 46/167 (27%), Gaps = 26/167 (15%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
R G+GKT +L I+ G R +I+ PTR +A + L
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREAIKR---GLRTLILAPTRVVAAEMEEA-------L 58
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
AE G V + L + N +I+DE+
Sbjct: 59 RGLPIRYQTPAIRAEHTGR-----EIVDLMCHATFTMRLLSPI---RVPNYNLIIMDEAH 110
Query: 169 KLFEAG--VRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRR 213
A RG+ + +AT + +
Sbjct: 111 FTDPASIAARGYISTRVEM------GEAAGIFMTATPPGSRDPFPQS 151
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 67.6 bits (164), Expect = 2e-14
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKTA F I I+ + +A+++ PTRELA+Q + L + +
Sbjct: 49 GYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQIQKVVMALGDYM 107
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G H + + +++ TP ++ +L L+ ++ ++DE+D
Sbjct: 108 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY--LSPKYIKMFVLDEAD 165
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
++ RGF+DQ+ I+ + N + + SAT DV + ++ ++ ++I V
Sbjct: 166 EMLS---RGFKDQIYDIFQKLN-SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 65.6 bits (159), Expect = 9e-14
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A A +G+GKT F I + + +A+++ PTRELA Q + L+ +
Sbjct: 47 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHM 105
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
++ H I + + +++ TP ++ + ++ I+DE+D
Sbjct: 106 DIKVHAC--IGGTSFVEDAEGLRDAQIVVGTPGRVFD--NIQRRRFRTDKIKMFILDEAD 161
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
++ GF++Q+ I+ P + + SAT DV + + ++ V+I V
Sbjct: 162 EMLS---SGFKEQIYQIFTLLP-PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 62.2 bits (150), Expect = 2e-12
Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR + A + +G+GKTA F I ++ L +A+I+ PTRELA Q + L + +
Sbjct: 54 GRDVIAQSQSGTGKTATFSISVLQCLDIQVR-ETQALILAPTRELAVQIQKGLLALGDYM 112
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
++ H + + V+ TP ++ +++ ++ L++DE+D
Sbjct: 113 NVQCHAC-IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSL--RTRAIKMLVLDEAD 169
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
++ +GF++Q+ +Y P + + SAT ++ + + + ++I V
Sbjct: 170 EMLN---KGFKEQIYDVYRYLP-PATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 59.5 bits (143), Expect = 1e-11
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + A +G GKTA F++ + L +++C TRELA Q E R S+ +
Sbjct: 38 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTG-QVSVLVMCHTRELAFQISKEYERFSKYM 96
Query: 109 GLRAHVIGKIQQAAEKFGPR-SAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
+ + +K +++ TP +++ +LNL +++ I+DE
Sbjct: 97 PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA--LARNKSLNLKHIKHFILDEC 154
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
DK+ E R + I+ + MFSAT ++++ CR+ ++ ++I V
Sbjct: 155 DKMLEQL--DMRRDVQEIFRMTP-HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 55.0 bits (131), Expect = 4e-10
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 14/169 (8%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G+ + PT +GKT + ++ + V P R LA + Y + +
Sbjct: 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY----VVPLRALAGEKYESFKKWEKIG 95
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G + E D+++TT K L + A + V L+VDE
Sbjct: 96 LRIGISTGDYESRDEHL-----GDCDIIVTTSEKADSL--IRNRASWIKAVSCLVVDEIH 148
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT--HTEDVAKWCRRKL 215
L + L + L+ SAT + ++A+W
Sbjct: 149 LLDSEKRGATLEILVTKMRRMN-KALRVIGLSATAPNVTEIAEWLDADY 196
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 52.7 bits (125), Expect = 4e-09
Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 13/177 (7%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR PTG GK+ + IP + V+V P + + ++ +
Sbjct: 40 GRDCLVVMPTGGGKSLCYQIPALLLNG-------LTVVVSPLIS-LMKDQVDQLQANGVA 91
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
+ +Q E + +L P + +L L N L VDE+
Sbjct: 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEHLAHWNPVLLAVDEAH 149
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRR---VQIN 222
+ + G + A+ P L +AT + + R L +QI+
Sbjct: 150 CISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS 206
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 52.7 bits (125), Expect = 4e-09
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR I A A G+GKTAAF+IP + PK +A+I+ PTRELA QT L +
Sbjct: 38 GRDILARAKNGTGKTAAFVIPTLEK-VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC 96
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G+ V R + +L+ TP +++ +L++ I+DE+D
Sbjct: 97 GISCMVTTGGTNL-RDDILRLNETVHILVGTPGRVLD--LASRKVADLSDCSLFIMDEAD 153
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINVG 224
K+ + +Q I + P + +FSAT V ++ + L + +IN+
Sbjct: 154 KMLSRDFKTIIEQ---ILSFLP-PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 50.0 bits (118), Expect = 3e-08
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 7/174 (4%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
GR I A A G+GK+ A+LIP++ L K +A+++ PTRELA Q +++S+ +
Sbjct: 40 GRDILARAKNGTGKSGAYLIPLLERLD-LKKDNIQAMVIVPTRELALQVSQICIQVSKHM 98
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
G + R V+I TP +++ + + +V+ +++DE+D
Sbjct: 99 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILD--LIKKGVAKVDHVQMIVLDEAD 156
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQIN 222
KL + F + I N + ++SAT V K+ L++ +IN
Sbjct: 157 KLLS---QDFVQIMEDIILTLP-KNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 46.7 bits (109), Expect = 4e-07
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 11/162 (6%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEG 107
PTG GKT ++ + L G + +++ PT+ L Q RL
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNL 78
Query: 108 LGLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDES 167
+ + + RS + + ++L +V ++ DE+
Sbjct: 79 PPEKIVALTGEK----SPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEA 134
Query: 168 DKLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAK 209
+ +A Y N +A+ K
Sbjct: 135 HRA---VGNYAYVFIAREYKRQ-AKNPLVIGLTASPGSTPEK 172
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 38.0 bits (87), Expect = 6e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG 109
R + TG+GK+ L + ++ G R VIV P ++ + + +
Sbjct: 51 RHLLVNGATGTGKS-VLLRELAYTGL---LRGDRMVIVDPNGDMLSKFGRDKDIILNPYD 106
Query: 110 LRAH 113
R
Sbjct: 107 QRTK 110
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 36.2 bits (82), Expect = 0.002
Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 4/175 (2%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G + + TG+GKT A+L+PI+ ++ + + + +
Sbjct: 38 GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
R V + +K I + AL++ L+VDE+D
Sbjct: 98 KDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 157
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSATHTEDVAKWCRRKLKRRVQINV 223
+ + GF + I A +L+ +FSAT E + + ++ ++ ++V
Sbjct: 158 LMLD---MGFITDVDQIAARMP-KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 34.7 bits (78), Expect = 0.003
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 22/154 (14%)
Query: 49 GRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGL 108
G G+GKT FL I+ R +++ PTR + + L
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 109 GLRAHVIGKIQQAAEKFGPRSAQKFDVLITTPNKLVYLLQMDPPALNLANVEWLIVDESD 168
+A + L Y + +N + I+DE+
Sbjct: 64 HTQAFSAHGSGREVIDA------------MCHATLTYRMLEPTRVVNWEVI---IMDEAH 108
Query: 169 KLFEAGVRGFRDQLAVIYAACSGPNLKRGMFSAT 202
L A + R A + +AT
Sbjct: 109 FLDPASI-AARGWAAHR---ARANESATILMTAT 138
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.4 bits (70), Expect = 0.042
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 55 CAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100
APTGSGK+ G++ +++ P+
Sbjct: 14 HAPTGSGKSTKVPAAYA-------AQGYKVLVLNPSVAATLGFGAY 52
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 28.3 bits (62), Expect = 0.77
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 58 TGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100
TG+GK + +I +L P A+++ P + LA Q E
Sbjct: 37 TGTGK-TVTMAKVIEALGRP------ALVLAPNKILAAQLAAE 72
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 28.2 bits (62), Expect = 0.87
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 58 TGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100
TG+GKT + +I + P +++ + LA Q Y+E
Sbjct: 40 TGTGKTF-TISNVIAQVNKP------TLVIAHNKTLAGQLYSE 75
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 2.4
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 50 RQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92
R + P+G+GK+ ++ L + F + TR
Sbjct: 1 RPVVLSGPSGAGKST-----LLKKLFQEHSSIFGFSVSHTTRN 38
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 26.2 bits (56), Expect = 3.3
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 52 IFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYNETVRL 104
+ A A GSGKT I H +RG V T + A++ +
Sbjct: 19 VLAGA--GSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 69
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 4.5
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRE 92
+ + + G G+ I ++L F I TR
Sbjct: 2 MRKTLVLLGAHGVGRRH-----IKNTLITKHPDRFAYPIPHTTRP 41
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 26.0 bits (57), Expect = 4.7
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 74 LRGPKNLGFRAVIVCPTRELAKQTYNETVRLSEGLG----LRAHVIGKIQQAAEKFGPRS 129
LR K+ +R +V + + + + +G ++ + K + S
Sbjct: 309 LRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDES 368
Query: 130 AQKFD 134
+Q++D
Sbjct: 369 SQQYD 373
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 4.8
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 110 LRAHVIGKIQQAAEKFGPRSAQKFDVLI 137
+R ++ K+ AEK+ D ++
Sbjct: 412 IREEIVLKVAILAEKYAVDYTWYVDTIL 439
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 25.3 bits (54), Expect = 6.1
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 65 AFLIP-IIHSLRGPKNLGFRAVIVCPTRELAKQTYNE 100
A L+ I GP V++ P + A + ++E
Sbjct: 3 ATLVAEIAERHAGP------VVLIAPDMQNALRLHDE 33
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.0 bits (53), Expect = 7.9
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 48 LGRQIFACAPTGSGKTAAFLIPIIHSLRGPKNLGFRAVIVCPTRELAKQTYN 99
+GR + P+ GK+ ++ LR + + TR +
Sbjct: 1 VGRVVVLSGPSAVGKST-----VVRCLRE-RIPNLHFSVSATTRAPRPGEVD 46
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 25.0 bits (54), Expect = 9.5
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 156 LANVEWLIVDESDKLFEAGVRGFRDQLAVIYAACSGPNLKRGMF 199
V+ +VD E G + S P R +F
Sbjct: 437 FFGVQPALVDNEGHPQEGATEG------NLVITDSWPGQARTLF 474
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.415
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,465
Number of extensions: 37303
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 34
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)