BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12978
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus
Star-Gsg Quaking Protein
Length = 140
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAK 77
AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 103 AEGEDSLKKMKLMELAILNGTYRDANLK 130
>pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73.
pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
Haemophilus Influenzae. Northeast Structural Genomics
Consortium Target Ir73
Length = 246
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 101 EEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGA-PLILSPR-------IPAIPT 152
++W+++A+AA ++ R + P + + +L+ A GA L L PR +P IP
Sbjct: 128 QQWQKIAIAACEQCGRNIVPEIRPL-XKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA 186
Query: 153 SAASLLNGSPGG 164
LL GS GG
Sbjct: 187 GGVRLLIGSEGG 198
>pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi0303, Pfam Duf558
Length = 257
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 101 EEWRRMAVAAAQETQRLLSPGMPGMATQLRTPTATPLGA-PLILSPR-------IPAIPT 152
++W+++A+AA ++ R + P + + +L+ A GA L L PR +P IP
Sbjct: 131 QQWQKIAIAACEQCGRNIVPEIRPL-XKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA 189
Query: 153 SAASLLNGSPGG 164
LL GS GG
Sbjct: 190 GGVRLLIGSEGG 201
>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site
Rna By Splicing Factor 1
Length = 131
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 27 LDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAK 77
++NV ++ +I N+ + + E +++L+K QL ELA +NGT R+++ +
Sbjct: 83 MENVKKAVEQIRNILKQGI--ETPEDQNDLRKMQLRELARLNGTLREDDNR 131
>pdb|2FTS|A Chain A, Crystal Structure Of The Glycine Receptor-Gephyrin Complex
pdb|2FU3|A Chain A, Crystal Structure Of Gephyrin E-Domain
pdb|2FU3|B Chain B, Crystal Structure Of Gephyrin E-Domain
Length = 419
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 66 IINGTYRDNNAKVLAAAVHI---LMLFPSSVSFS---AACDEEWRRMAVAAAQETQRLLS 119
IIN YRD +VLA V+ L FP+SV A D R + +Q ++
Sbjct: 27 IIN--YRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQ 84
Query: 120 PGMPGMATQLRTPTATPLGA 139
MPG ++ T P GA
Sbjct: 85 TVMPGQVMRVTTGAPIPCGA 104
>pdb|1T3E|A Chain A, Structural Basis Of Dynamic Glycine Receptor Clustering
pdb|1T3E|B Chain B, Structural Basis Of Dynamic Glycine Receptor Clustering
Length = 421
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 66 IINGTYRDNNAKVLAAAVHI---LMLFPSSVSFS---AACDEEWRRMAVAAAQETQRLLS 119
IIN YRD +VLA V+ L FP+SV A D R + +Q ++
Sbjct: 29 IIN--YRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQ 86
Query: 120 PGMPGMATQLRTPTATPLGA 139
MPG ++ T P GA
Sbjct: 87 TVMPGQVMRVTTGAPIPCGA 106
>pdb|1OG0|B Chain B, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|A Chain A, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|C Chain C, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|D Chain D, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|E Chain E, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|F Chain F, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|G Chain G, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|H Chain H, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
Length = 370
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 121 GMP----GMATQLRTPTATPLGAPLILSPRIPAIPTS 153
GMP G +R PL +P +L +IPA PTS
Sbjct: 11 GMPKVNQGAEEDVRILGYDPLASPALLQVQIPATPTS 47
>pdb|1HFB|A Chain A, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|B Chain B, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|C Chain C, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|D Chain D, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|E Chain E, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|F Chain F, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|G Chain G, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|H Chain H, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1OAB|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OAB|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OF8|A Chain A, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OF8|B Chain B, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OFA|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFA|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFB|A Chain A, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFB|B Chain B, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFO|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFO|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFP|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFQ|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFR|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OF6|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OFR|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
Length = 370
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 121 GMP----GMATQLRTPTATPLGAPLILSPRIPAIPTS 153
GMP G +R PL +P +L +IPA PTS
Sbjct: 11 GMPKVNQGAEEDVRILGYDPLASPALLQVQIPATPTS 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,134,576
Number of Sequences: 62578
Number of extensions: 226749
Number of successful extensions: 403
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 15
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)