BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12978
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 104/158 (65%), Gaps = 23/158 (14%)
Query: 49 QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAV 108
QAEGEDELKKRQLMELAIINGTYRD AK + A CDEEWRR+
Sbjct: 237 QAEGEDELKKRQLMELAIINGTYRDTTAKSV-----------------AVCDEEWRRL-- 277
Query: 109 AAAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPGGQLMN 168
AA +++ L S G+PG+A Q+R P A PLGAPLIL+PR+ +PT+AAS+L+
Sbjct: 278 VAASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRM-TVPTTAASILSAQAAPTAAF 336
Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGG 206
H +I+ PY DYANYAAL G+PLLTEY ADHS G
Sbjct: 337 DQTGHGMIFAPY-DYANYAALAGNPLLTEY--ADHSVG 371
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 66/133 (49%), Gaps = 29/133 (21%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A + R+
Sbjct: 184 AEGEDSLKKMQLMELAILNGTYRDANLKSPALA------------FSLAATAQAPRIITG 231
Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS--PGGQLM 167
A P +P A LRTP TP G L+ P I I T A + NG+ P LM
Sbjct: 232 PA--------PVLPPAA--LRTP--TPAGPTLM--PLIRQIQT-ATVMPNGTPHPTATLM 276
Query: 168 NPADAHQLIYTPY 180
+ A LIYTPY
Sbjct: 277 SQAPEAGLIYTPY 289
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 65/133 (48%), Gaps = 30/133 (22%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A + R+
Sbjct: 184 AEGEDSLKKMQLMELAILNGTYRDANLKSPALA------------FSLAATGQAPRIITG 231
Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSPG--GQLM 167
A +LSP LRTP TP G L+ P I I T A + NG+P LM
Sbjct: 232 PAP----VLSPA------ALRTP--TPAGHTLM--PLIRQIQT--AVMPNGTPHPTATLM 275
Query: 168 NPADAHQLIYTPY 180
A LIYTPY
Sbjct: 276 QQAPEGGLIYTPY 288
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 65/137 (47%), Gaps = 37/137 (27%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A A
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLA----------A 220
Query: 110 AAQETQRLLS---PGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG-- 163
AQ R+++ P +P A LRTPT A P PLI A + NG+P
Sbjct: 221 TAQAAPRIITGPAPVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPT 271
Query: 164 GQLMNPADAHQLIYTPY 180
++ P LIYTPY
Sbjct: 272 AAIVPPGPEAGLIYTPY 288
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 62/134 (46%), Gaps = 32/134 (23%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A + R+
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLAATAQAPRIITG 230
Query: 110 AAQETQRLLSPGMPGMATQLRTPT-ATPLGAPLILSPRIPAIPTSAASLLNGSPG--GQL 166
A P +P A LRTPT A P PLI A + NG+P +
Sbjct: 231 PA--------PVLPPAA--LRTPTPAGPTIMPLIRQ-------IQTAVMPNGTPHPTAAI 273
Query: 167 MNPADAHQLIYTPY 180
+ P LIYTPY
Sbjct: 274 VPPGPEAGLIYTPY 287
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A S++ +AA + R +A
Sbjct: 183 AEGEDNLKKMQLMELAILNGTYRDTNIKAPTLAF--------SLAAAAAAAQGPRLIAAP 234
Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLL-NGSPGGQLMN 168
Q +L P LR P TP G P++ R PT A++L NG+P L+
Sbjct: 235 PGQ----VLPPA------TLRPP--TPAGTPIMNIIR----PTQMATVLPNGTP--TLVP 276
Query: 169 PADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGL 207
P +IYT DY A T L EY +HSG L
Sbjct: 277 PTPDAGIIYTTPYDYPYALAPTS---LLEY-PIEHSGVL 311
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 76/160 (47%), Gaps = 33/160 (20%)
Query: 50 AEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVHILMLFPSSVSFSAACDEEWRRMAVA 109
AEGED LKK QLMELAI+NGTYRD N K A A FS A + R+
Sbjct: 183 AEGEDSLKKMQLMELAILNGTYRDANIKSPALA------------FSLAATAQAPRIMTG 230
Query: 110 AAQETQRLLSPGMPGMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGS--PGGQLM 167
+P MP A LRTP T AP ++ P I I TSA + G+ P L+
Sbjct: 231 P--------TPVMPNAA--LRTPAPT---APTLM-PLIRQIQTSAL-MPTGTPHPTATLL 275
Query: 168 NPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGL 207
+IY PY DY YA + +L EY D SG L
Sbjct: 276 PQTPESGIIYAPY-DYP-YALAPATSIL-EY-PIDSSGVL 311
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 4/36 (11%)
Query: 51 EGEDELKKRQLMELAIINGTYR----DNNAKVLAAA 82
EG DELK++QLMELAIINGTYR N A+V+ A
Sbjct: 307 EGTDELKRKQLMELAIINGTYRPMKSPNPARVMTAV 342
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 LDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVL 79
++NV ++ +I N+ + + E +++L+K QL ELA +NGT R+++ ++L
Sbjct: 212 MENVKKAVEQIRNILKQGI--ETPEDQNDLRKMQLRELARLNGTLREDDNRIL 262
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 LDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVL 79
++NV ++ +I N+ + + E +++L+K QL ELA +NGT R+++ ++L
Sbjct: 212 MENVKKAVEQIRNILKQGI--ETPEDQNDLRKMQLRELARLNGTLREDDNRIL 262
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 37.0 bits (84), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNN 75
EG+++LK+ QL ELA++NGT R++N
Sbjct: 247 EGQNDLKRGQLRELAVLNGTLREDN 271
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNNAKVL 79
EG+++LK+ QL +LA +NGT RD+ +V
Sbjct: 283 EGQNDLKRNQLRQLATLNGTLRDDENQVC 311
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNNAKV---LAAAVHILMLFPSSVSFSA 97
EG++ELK+ QL ELA +NGT RD+ + H P +F+A
Sbjct: 278 EGQNELKRNQLRELAALNGTLRDDENQACQNCGQIGHRKYDCPEQRNFTA 327
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 51 EGEDELKKRQLMELAIINGTYRDN 74
EG++ELK+ QL ELA +NGT RD+
Sbjct: 276 EGQNELKRSQLRELAALNGTLRDD 299
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 32 ESSMKILN--VEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNN---AKVLAAAVHIL 86
+ +K++N +E ++ P EGE++ K+ QL ELA +NGT RD+ K H
Sbjct: 324 KKCIKLINQVIETAASTP---EGENDHKRNQLRELAALNGTLRDDENQLCKNCGNKGHRA 380
Query: 87 MLFPSSVSFSA 97
P +++A
Sbjct: 381 FECPEQRNWTA 391
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 51 EGEDELKKRQLMELAIINGTYRDN 74
EG++ELK+ QL ELA +NGT RD+
Sbjct: 293 EGQNELKRNQLRELAALNGTLRDD 316
>sp|B6EIB2|THII_ALISL tRNA sulfurtransferase OS=Aliivibrio salmonicida (strain LFI1238)
GN=thiI PE=3 SV=1
Length = 482
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 22 QYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLAA 81
+ F++ D+V + ++IL S+ + +G + + +R +E++ ++GTYR+ +VL A
Sbjct: 10 EVFVKSDSVRKRFIRILETNLRSIIQRDTKGVEVINRRDYIEVSGLDGTYRN---QVLTA 66
Query: 82 AVH 84
H
Sbjct: 67 VTH 69
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNN 75
EG++ELK+ QL ELA +NGT R++N
Sbjct: 232 EGQNELKRGQLRELAELNGTLREDN 256
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNN 75
EG+++LK+ QL ELA +NGT R++N
Sbjct: 246 EGQNDLKRGQLRELAELNGTLREDN 270
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNNAKV---LAAAVHILMLFPSSVSFSA 97
EGE++ K+ QL ELA +NGT RD+ ++ H P +SA
Sbjct: 342 EGENDHKRNQLRELASLNGTLRDDENQLCQNCGEKGHRRWECPQQRVYSA 391
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNNAKV---LAAAVHILMLFPSSVSFSA 97
EGE++ K+ QL ELA +NGT RD+ ++ H P +SA
Sbjct: 342 EGENDHKRNQLRELASLNGTLRDDENQLCQNCGEKGHRRWECPQQRVYSA 391
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 52 GEDELKKRQLMELAIINGTYRD 73
G+++LK+ QL ELAI+NGT R+
Sbjct: 275 GQNDLKRGQLRELAILNGTLRE 296
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 51 EGEDELKKRQLMELAIINGTYRDNNA 76
EG++E K++QL ELA +NGT R+ A
Sbjct: 270 EGKNEHKRQQLRELAEMNGTLRERPA 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,107,289
Number of Sequences: 539616
Number of extensions: 3041739
Number of successful extensions: 8431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 8361
Number of HSP's gapped (non-prelim): 83
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)