Query psy12978
Match_columns 210
No_of_seqs 113 out of 146
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 16:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02395 SF1_like-KH Splicing f 99.3 7.4E-12 1.6E-16 98.9 5.2 52 21-72 68-120 (120)
2 KOG1588|consensus 99.2 1.2E-11 2.6E-16 109.9 5.2 57 20-78 160-219 (259)
3 KOG0119|consensus 98.8 2.9E-09 6.2E-14 102.3 3.5 54 22-75 204-260 (554)
4 COG5176 MSL5 Splicing factor ( 98.0 3.9E-06 8.3E-11 74.9 3.8 52 23-74 215-269 (269)
5 KOG1852|consensus 60.6 7.8 0.00017 34.3 2.7 41 28-69 40-83 (223)
6 KOG4797|consensus 40.1 7.3 0.00016 32.3 -0.7 46 31-76 46-91 (123)
7 cd04931 ACT_PAH ACT domain of 37.3 27 0.00059 26.4 2.1 28 19-46 55-82 (90)
8 PF05770 Ins134_P3_kin: Inosit 31.5 28 0.0006 32.1 1.6 52 136-209 136-187 (307)
9 cd04929 ACT_TPH ACT domain of 29.6 54 0.0012 23.8 2.5 26 19-45 41-66 (74)
10 PF15651 Tox-SGS: Salivary gla 27.8 31 0.00066 27.8 1.1 23 158-182 50-72 (100)
11 PRK13877 conjugal transfer rel 26.1 1.1E+02 0.0024 24.5 4.0 54 18-72 12-69 (114)
12 COG2160 AraA L-arabinose isome 24.2 1.1E+02 0.0025 30.4 4.3 41 27-67 218-259 (497)
13 cd04904 ACT_AAAH ACT domain of 24.1 67 0.0015 22.7 2.2 26 19-45 41-66 (74)
14 PHA02096 hypothetical protein 23.7 67 0.0014 25.8 2.3 40 9-48 16-55 (103)
15 PF10413 Rhodopsin_N: Amino te 23.5 17 0.00037 24.7 -1.0 19 170-190 13-31 (36)
16 PF10281 Ish1: Putative stress 23.0 71 0.0015 20.4 1.9 23 44-68 15-37 (38)
17 KOG1482|consensus 21.6 1.3E+02 0.0029 29.1 4.1 37 10-46 318-354 (379)
18 PF07582 AP_endonuc_2_N: AP en 20.8 89 0.0019 22.3 2.2 29 24-52 22-50 (55)
19 PRK05696 fliL flagellar basal 20.6 2.3E+02 0.0051 23.3 5.0 59 13-71 87-154 (170)
No 1
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=99.25 E-value=7.4e-12 Score=98.95 Aligned_cols=52 Identities=33% Similarity=0.519 Sum_probs=47.7
Q ss_pred EeeehhcchhHHHHHHHHHHHhhhcCCCCCcC-chHHHHHHHHHHHHHhcccc
Q psy12978 21 FQYFMELDNVTESSMKILNVEFSSVNPQQAEG-EDELKKRQLMELAIINGTYR 72 (210)
Q Consensus 21 ~~~f~D~qn~ae~kLkkAve~I~~LLvP~pEg-~DeLKR~QLrELAiLNGTyR 72 (210)
-|+++...+.+++++++|++.|++||.+..++ .|+|||+||||||++|||||
T Consensus 68 lhV~I~a~~~~~e~~~~A~~~I~~ll~~~~~~~~~~~k~~ql~~la~~nGt~~ 120 (120)
T cd02395 68 LHVLITAETPPEEALAKAVEAIEELLKPAIEGGNDELKREQLRELALLNGTYR 120 (120)
T ss_pred cEEEEEeCCcHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhcccCC
Confidence 67777777778999999999999999988776 99999999999999999997
No 2
>KOG1588|consensus
Probab=99.21 E-value=1.2e-11 Score=109.88 Aligned_cols=57 Identities=28% Similarity=0.380 Sum_probs=47.7
Q ss_pred EEeeehhc---chhHHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCchh
Q psy12978 20 SFQYFMEL---DNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKV 78 (210)
Q Consensus 20 ~~~~f~D~---qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~~~ 78 (210)
-.||.+++ .+++.++|.+|+|+|+++|+|.+|++| ||+||||||+|||||+.+..++
T Consensus 160 pLHVlIe~~~p~~ea~~rl~~AleeI~klL~P~~e~~d--k~~QL~ELa~lngt~~~~~~~~ 219 (259)
T KOG1588|consen 160 PLHVLIETEAPPAEAYARLAYALEEIKKLLVPDHEDED--KREQLRELAILNGTYLRSESRK 219 (259)
T ss_pred CcEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHhhcCCccccccccc
Confidence 35666555 489999999999999999999999999 9999999999999955444433
No 3
>KOG0119|consensus
Probab=98.80 E-value=2.9e-09 Score=102.28 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=48.5
Q ss_pred eeehhcchhHHHHHHHHHHHhhhcC---CCCCcCchHHHHHHHHHHHHHhccccCCC
Q psy12978 22 QYFMELDNVTESSMKILNVEFSSVN---PQQAEGEDELKKRQLMELAIINGTYRDNN 75 (210)
Q Consensus 22 ~~f~D~qn~ae~kLkkAve~I~~LL---vP~pEg~DeLKR~QLrELAiLNGTyRe~~ 75 (210)
-.|..+...+++|||+|++.|++|+ |.++|++|+|||.||||||.+|||+|+++
T Consensus 204 pLH~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela~lNgt~r~~d 260 (554)
T KOG0119|consen 204 PLHCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELARLNGTLRDDD 260 (554)
T ss_pred ceeEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHHhCCCCCccc
Confidence 3455566778899999999999999 58999999999999999999999999988
No 4
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Probab=98.04 E-value=3.9e-06 Score=74.92 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=40.7
Q ss_pred eehhcchhHHHHHHHHHHHhhhcC---CCCCcCchHHHHHHHHHHHHHhccccCC
Q psy12978 23 YFMELDNVTESSMKILNVEFSSVN---PQQAEGEDELKKRQLMELAIINGTYRDN 74 (210)
Q Consensus 23 ~f~D~qn~ae~kLkkAve~I~~LL---vP~pEg~DeLKR~QLrELAiLNGTyRe~ 74 (210)
.|-+++...+.|+.++..-+...+ +.+|||+|||||-||++||-+|||+|++
T Consensus 215 lhcLI~adsedki~~~ik~~~n~I~~a~~~PeGqnDlkR~qlr~la~lngtlr~d 269 (269)
T COG5176 215 LHCLIEADSEDKICRLIKSQLNAIREARRNPEGQNDLKRFQLRWLAHLNGTLRAD 269 (269)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHhcceecCC
Confidence 344556677777777755444444 6789999999999999999999999975
No 5
>KOG1852|consensus
Probab=60.64 E-value=7.8 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCcCchH--HHHHHHHHHHH-Hhc
Q psy12978 28 DNVTESSMKILNVEFSSVNPQQAEGEDE--LKKRQLMELAI-ING 69 (210)
Q Consensus 28 qn~ae~kLkkAve~I~~LLvP~pEg~De--LKR~QLrELAi-LNG 69 (210)
|.-++..+|.-...|.++|.| |||+|| .|-..||.+.+ |||
T Consensus 40 qqyiqq~ikadpsnv~~iltp-pe~qdegvwkyehlrqfc~elng 83 (223)
T KOG1852|consen 40 QQYIQQNIKADPSNVDKILTP-PEGQDEGVWKYEHLRQFCLELNG 83 (223)
T ss_pred HHHHHHHhccCchhHHHhcCC-CcccccchhhHHHHHHHHHHhhh
Confidence 344555666656778888887 688887 68888888764 777
No 6
>KOG4797|consensus
Probab=40.10 E-value=7.3 Score=32.25 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCc
Q psy12978 31 TESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNA 76 (210)
Q Consensus 31 ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~ 76 (210)
++-||.+|.+-++.-|.=.--.+-|.-|.|.+||..-|..++.++.
T Consensus 46 IDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777222122456667899999999999986654
No 7
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.27 E-value=27 Score=26.43 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=22.7
Q ss_pred EEEeeehhcchhHHHHHHHHHHHhhhcC
Q psy12978 19 FSFQYFMELDNVTESSMKILNVEFSSVN 46 (210)
Q Consensus 19 ~~~~~f~D~qn~ae~kLkkAve~I~~LL 46 (210)
+.|.+|+|++..-+.+++++++.+++.|
T Consensus 55 ~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 55 DEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 5577889998644688999999998877
No 8
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=31.47 E-value=28 Score=32.09 Aligned_cols=52 Identities=25% Similarity=0.450 Sum_probs=28.5
Q ss_pred CCCCCeeeccCCCCCCCcccccCCCCCCCcCCCCCCCCceeeccCCCcccchhccCCcccccccccCCCCcccc
Q psy12978 136 PLGAPLILSPRIPAIPTSAASLLNGSPGGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHSGGLYV 209 (210)
Q Consensus 136 p~gaPiilsP~~~~~ptt~a~l~ngt~~~~~~~~~~~~glIytPy~dY~~yAaLa~~~~l~EY~~~dhsg~l~~ 209 (210)
-+.-|+|.-|+.. .||.-+ |.=.+||.+=. .. .|..+-++.|| ++|+|+||+
T Consensus 136 gL~fPlI~KPlvA----------~Gsa~S------H~Maivf~~~g-L~---~L~~P~VlQeF--VNHggvLfK 187 (307)
T PF05770_consen 136 GLKFPLICKPLVA----------CGSADS------HKMAIVFNEEG-LK---DLKPPCVLQEF--VNHGGVLFK 187 (307)
T ss_dssp TS-SSEEEEESB-----------SSTSCC------CEEEEE-SGGG-GT---T--SSEEEEE------TTEEEE
T ss_pred CCcccEEeeehhh----------cCCccc------eEEEEEECHHH-Hh---hcCCCEEEEEe--ecCCCEEEE
Confidence 4668888877663 354432 33378887652 33 36666789999 599999996
No 9
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.65 E-value=54 Score=23.82 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=21.1
Q ss_pred EEEeeehhcchhHHHHHHHHHHHhhhc
Q psy12978 19 FSFQYFMELDNVTESSMKILNVEFSSV 45 (210)
Q Consensus 19 ~~~~~f~D~qn~ae~kLkkAve~I~~L 45 (210)
+-+.+|.|++...+ +++++.+.+++.
T Consensus 41 ~~y~F~id~e~~~~-~i~~~l~~l~~~ 66 (74)
T cd04929 41 SEFEIFVDCECDQR-RLDELVQLLKRE 66 (74)
T ss_pred ceEEEEEEEEcCHH-HHHHHHHHHHHh
Confidence 56788999997765 899999988763
No 10
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=27.83 E-value=31 Score=27.76 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=16.6
Q ss_pred CCCCCCCcCCCCCCCCceeeccCCC
Q psy12978 158 LNGSPGGQLMNPADAHQLIYTPYAD 182 (210)
Q Consensus 158 ~ngt~~~~~~~~~~~~glIytPy~d 182 (210)
-||.| ...=.|.+++||||||..
T Consensus 50 w~G~p--Sv~C~Gq~ssfiyTp~~~ 72 (100)
T PF15651_consen 50 WHGQP--SVSCDGQQSSFIYTPYET 72 (100)
T ss_pred ECCcc--ceeeccceeeeEEccccC
Confidence 45544 345568889999999973
No 11
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=26.11 E-value=1.1e+02 Score=24.48 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=36.7
Q ss_pred EEEEeeehhcchhHHHHHHHH----HHHhhhcCCCCCcCchHHHHHHHHHHHHHhcccc
Q psy12978 18 SFSFQYFMELDNVTESSMKIL----NVEFSSVNPQQAEGEDELKKRQLMELAIINGTYR 72 (210)
Q Consensus 18 ~~~~~~f~D~qn~ae~kLkkA----ve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyR 72 (210)
.+.|.+..+=...++.|.++| .+-|+++..-- .=.-.+-.++++||+-|||.+.
T Consensus 12 ~I~vrvt~eE~~~I~~kA~~AGlS~SeYLR~~aLg~-~I~s~~D~e~v~eL~~in~dlg 69 (114)
T PRK13877 12 HLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQGY-QIKGVIDYEYVRELARINGDLG 69 (114)
T ss_pred eeEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHcCC-CccccCCHHHHHHHHHhcccHH
Confidence 456777777778888888886 46666665310 0011355789999999999884
No 12
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=24.17 E-value=1.1e+02 Score=30.44 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHHhhhcC-CCCCcCchHHHHHHHHHHHHH
Q psy12978 27 LDNVTESSMKILNVEFSSVN-PQQAEGEDELKKRQLMELAII 67 (210)
Q Consensus 27 ~qn~ae~kLkkAve~I~~LL-vP~pEg~DeLKR~QLrELAiL 67 (210)
...++|..++...|+++++- .+.++..+++||.+..|-|.+
T Consensus 218 ~~~vse~eV~~l~eey~~~y~i~p~~~~~e~~~~av~eqaki 259 (497)
T COG2160 218 VNEVSEGEVEALLEEYRSLYIITPDTDPAELKRAAVLEQAKI 259 (497)
T ss_pred HHhccHHHHHHHHHHHHHhccCCcccCChHHHHHHHHHHHHH
Confidence 34667788888899999987 555677789999988877766
No 13
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.07 E-value=67 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEeeehhcchhHHHHHHHHHHHhhhc
Q psy12978 19 FSFQYFMELDNVTESSMKILNVEFSSV 45 (210)
Q Consensus 19 ~~~~~f~D~qn~ae~kLkkAve~I~~L 45 (210)
+.|.+|.|++. -+.+++++.+++++.
T Consensus 41 ~~y~Ffvd~~~-~~~~~~~~l~~L~~~ 66 (74)
T cd04904 41 SEYEFFVDCEV-DRGDLDQLISSLRRV 66 (74)
T ss_pred ceEEEEEEEEc-ChHHHHHHHHHHHHh
Confidence 56788899997 556788888888764
No 14
>PHA02096 hypothetical protein
Probab=23.75 E-value=67 Score=25.75 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=32.0
Q ss_pred hhccceeEEEEEEeeehhcchhHHHHHHHHHHHhhhcCCC
Q psy12978 9 QWTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVNPQ 48 (210)
Q Consensus 9 ~~~~~~~~~~~~~~~f~D~qn~ae~kLkkAve~I~~LLvP 48 (210)
++.+.-..-+|+--+|-|.-+.++..|++|-+.|++.|+-
T Consensus 16 hfv~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylkg 55 (103)
T PHA02096 16 HFVSGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLKG 55 (103)
T ss_pred EeecCcccccccceEEeccHHHhhhHHHHHHHHHHHHhcc
Confidence 3344444557888899999999999999999999988853
No 15
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=23.48 E-value=17 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.756 Sum_probs=13.8
Q ss_pred CCCCceeeccCCCcccchhcc
Q psy12978 170 ADAHQLIYTPYADYANYAALT 190 (210)
Q Consensus 170 ~~~~glIytPy~dY~~yAaLa 190 (210)
...+|++=+|| +|+.|= |+
T Consensus 13 sN~TGvVRsP~-eYpQYY-L~ 31 (36)
T PF10413_consen 13 SNRTGVVRSPY-EYPQYY-LA 31 (36)
T ss_dssp TGTTSHHS-TT-TSHHTT-TS
T ss_pred ccccccccCCC-cCccee-ec
Confidence 45679999999 699876 44
No 16
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.99 E-value=71 Score=20.40 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.2
Q ss_pred hcCCCCCcCchHHHHHHHHHHHHHh
Q psy12978 44 SVNPQQAEGEDELKKRQLMELAIIN 68 (210)
Q Consensus 44 ~LLvP~pEg~DeLKR~QLrELAiLN 68 (210)
+--++++++. .+|.+|.++|--|
T Consensus 15 ~~gi~~~~~~--~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 15 SHGIPVPKSA--KTRDELLKLAKKN 37 (38)
T ss_pred HcCCCCCCCC--CCHHHHHHHHHHh
Confidence 3446666666 7899999988644
No 17
>KOG1482|consensus
Probab=21.62 E-value=1.3e+02 Score=29.13 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=34.0
Q ss_pred hccceeEEEEEEeeehhcchhHHHHHHHHHHHhhhcC
Q psy12978 10 WTSSVYKISFSFQYFMELDNVTESSMKILNVEFSSVN 46 (210)
Q Consensus 10 ~~~~~~~~~~~~~~f~D~qn~ae~kLkkAve~I~~LL 46 (210)
|.-+|-|+.+|-|+=.|-+++.++-|+++.+.|++--
T Consensus 318 WsiTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~ 354 (379)
T KOG1482|consen 318 WSITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRY 354 (379)
T ss_pred EEEecCceEEEEEEeecCCCCHHHHHHHHHHHHHhhc
Confidence 8888999999999999999999999999999988743
No 18
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=20.80 E-value=89 Score=22.29 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=17.6
Q ss_pred ehhcchhHHHHHHHHHHHhhhcCCCCCcC
Q psy12978 24 FMELDNVTESSMKILNVEFSSVNPQQAEG 52 (210)
Q Consensus 24 f~D~qn~ae~kLkkAve~I~~LLvP~pEg 52 (210)
|+|.--..+.-++++++-+++++++.+.+
T Consensus 22 ~ED~~~~~~~G~~~a~~~lr~~l~~~~~~ 50 (55)
T PF07582_consen 22 HEDALMDPEEGAREAAAFLRKLLIREPPG 50 (55)
T ss_dssp --STTTSHHHHHHHHHHHHHTT-------
T ss_pred eecCCCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 56666677889999999999999887654
No 19
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.62 E-value=2.3e+02 Score=23.27 Aligned_cols=59 Identities=8% Similarity=0.207 Sum_probs=38.7
Q ss_pred ceeEEEEEEeeeh-hcchhHHHHHHHHHHHhhhcC-------CCCCcCchHHHHHHHHHH-HHHhccc
Q psy12978 13 SVYKISFSFQYFM-ELDNVTESSMKILNVEFSSVN-------PQQAEGEDELKKRQLMEL-AIINGTY 71 (210)
Q Consensus 13 ~~~~~~~~~~~f~-D~qn~ae~kLkkAve~I~~LL-------vP~pEg~DeLKR~QLrEL-AiLNGTy 71 (210)
..-|++++..+-. +..+..+.++-.-.+.|..+| .-.++|.+.||++=++++ .+||..+
T Consensus 87 ryLkv~i~l~~~d~~~~~~~~~~~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~ 154 (170)
T PRK05696 87 RLVQIKVQLMVRGSDDEELAKKHIPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVT 154 (170)
T ss_pred eEEEEEEEEEECCHHHHHHHHHhhHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457888887653 344556666666778888777 345678888888777666 4566433
Done!