Query psy12978
Match_columns 210
No_of_seqs 113 out of 146
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 16:01:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 99.6 5.1E-16 1.7E-20 124.9 1.6 55 26-80 79-133 (140)
2 1k1g_A SF1-BO isoform; splicin 99.4 3E-14 1E-18 112.3 3.2 54 21-76 74-130 (131)
3 2yqr_A KIAA0907 protein; struc 87.1 0.16 5.4E-06 39.4 0.7 38 21-60 74-111 (119)
4 2ocz_A 3-dehydroquinate dehydr 16.9 83 0.0028 25.9 2.8 49 15-63 114-165 (231)
5 2yr1_A 3-dehydroquinate dehydr 16.6 1.1E+02 0.0036 25.7 3.4 50 15-64 140-194 (257)
6 1sfl_A 3-dehydroquinate dehydr 15.5 97 0.0033 25.5 2.9 50 15-64 126-180 (238)
7 1by1_A Protein (PIX); RHO-GTPa 15.0 9.2 0.00031 30.0 -3.3 12 35-46 176-187 (209)
8 3lhp_S 4E10_D0_1ISEA_004_N (T9 14.5 1.7E+02 0.0057 23.2 3.8 38 25-65 10-55 (123)
9 3l9c_A 3-dehydroquinate dehydr 13.9 1.1E+02 0.0037 25.9 2.8 47 16-62 146-195 (259)
10 1i6z_A BAG-family molecular ch 11.8 2E+02 0.0069 23.1 3.6 29 36-64 76-104 (135)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.56 E-value=5.1e-16 Score=124.87 Aligned_cols=55 Identities=49% Similarity=0.584 Sum_probs=50.7
Q ss_pred hcchhHHHHHHHHHHHhhhcCCCCCcCchHHHHHHHHHHHHHhccccCCCchhhH
Q psy12978 26 ELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQLMELAIINGTYRDNNAKVLA 80 (210)
Q Consensus 26 D~qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~QLrELAiLNGTyRe~~~~~~a 80 (210)
|.++++..+|++|+++|++||+|++|++|++||+||||||+||||||+++....+
T Consensus 79 ~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~~~ 133 (140)
T 2bl5_A 79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPA 133 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSCTT
T ss_pred CchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccchh
Confidence 5568899999999999999999999999999999999999999999998876654
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=3e-14 Score=112.33 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=42.8
Q ss_pred EeeehhcchhHHHHHHHHHHHhhhcCC---CCCcCchHHHHHHHHHHHHHhccccCCCc
Q psy12978 21 FQYFMELDNVTESSMKILNVEFSSVNP---QQAEGEDELKKRQLMELAIINGTYRDNNA 76 (210)
Q Consensus 21 ~~~f~D~qn~ae~kLkkAve~I~~LLv---P~pEg~DeLKR~QLrELAiLNGTyRe~~~ 76 (210)
-|+++...+ .+++++|+++|++||. |+||++|++||+||||||+||||||+++.
T Consensus 74 lhV~I~a~~--~e~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 74 LHALVTANT--MENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred eEEEEEECC--HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 355554433 5689999999999995 58999999999999999999999998763
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.12 E-value=0.16 Score=39.41 Aligned_cols=38 Identities=0% Similarity=-0.032 Sum_probs=30.3
Q ss_pred EeeehhcchhHHHHHHHHHHHhhhcCCCCCcCchHHHHHH
Q psy12978 21 FQYFMELDNVTESSMKILNVEFSSVNPQQAEGEDELKKRQ 60 (210)
Q Consensus 21 ~~~f~D~qn~ae~kLkkAve~I~~LLvP~pEg~DeLKR~Q 60 (210)
-|+++... ..+++++|++.|++|+.++.|..+++|++|
T Consensus 74 l~V~I~a~--~~e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 74 MYIYISHP--KPEGLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp CEEEEEES--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeC--CHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 35554443 346799999999999999999999999886
No 4
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}
Probab=16.92 E-value=83 Score=25.88 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=36.3
Q ss_pred eEEEEEEeeehhcchhHHHHHHHHHH---HhhhcCCCCCcCchHHHHHHHHH
Q psy12978 15 YKISFSFQYFMELDNVTESSMKILNV---EFSSVNPQQAEGEDELKKRQLME 63 (210)
Q Consensus 15 ~~~~~~~~~f~D~qn~ae~kLkkAve---~I~~LLvP~pEg~DeLKR~QLrE 63 (210)
-||-.|+|.|..+.+....+++++.+ .|-|+.+..-..+|.++=.++..
T Consensus 114 ~kvI~S~Hdf~~tp~el~~~~~~~~~~gaDivKia~~a~~~~D~l~ll~~~~ 165 (231)
T 2ocz_A 114 PNLILSYHNFEETPENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTR 165 (231)
T ss_dssp SSEEEEEEESSCCCTTHHHHHHHHHHTCCSEEEEEECCSSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 57889999999998777778887754 56677777656667776666553
No 5
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=16.56 E-value=1.1e+02 Score=25.67 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=34.3
Q ss_pred eEEEEEEeeehhcch--hHHHHHHHHHH---HhhhcCCCCCcCchHHHHHHHHHH
Q psy12978 15 YKISFSFQYFMELDN--VTESSMKILNV---EFSSVNPQQAEGEDELKKRQLMEL 64 (210)
Q Consensus 15 ~~~~~~~~~f~D~qn--~ae~kLkkAve---~I~~LLvP~pEg~DeLKR~QLrEL 64 (210)
-||-.|+|.|..+.. ....+++++.+ .|-|+.+..-..+|-++=.++..-
T Consensus 140 ~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivKia~~a~s~~D~l~ll~~~~~ 194 (257)
T 2yr1_A 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEE 194 (257)
T ss_dssp CEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence 478889999999884 45556666543 466777766666777776666543
No 6
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=15.52 E-value=97 Score=25.48 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=33.5
Q ss_pred eEEEEEEeeehhcch--hHHHHHHHHHH---HhhhcCCCCCcCchHHHHHHHHHH
Q psy12978 15 YKISFSFQYFMELDN--VTESSMKILNV---EFSSVNPQQAEGEDELKKRQLMEL 64 (210)
Q Consensus 15 ~~~~~~~~~f~D~qn--~ae~kLkkAve---~I~~LLvP~pEg~DeLKR~QLrEL 64 (210)
-||-.|+|.|..+.. ....+++++.+ .|-|+.+..-..+|-++=.++..-
T Consensus 126 ~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia~~a~~~~D~l~ll~~~~~ 180 (238)
T 1sfl_A 126 KEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST 180 (238)
T ss_dssp CEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 478899999999884 45555666542 466677666566677766666543
No 7
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=15.02 E-value=9.2 Score=29.96 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.0
Q ss_pred HHHHHHHhhhcC
Q psy12978 35 MKILNVEFSSVN 46 (210)
Q Consensus 35 LkkAve~I~~LL 46 (210)
|++|.+.|++++
T Consensus 176 l~~Al~~i~~v~ 187 (209)
T 1by1_A 176 IQKSMAAFKNLS 187 (209)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 8
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=14.46 E-value=1.7e+02 Score=23.19 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=26.1
Q ss_pred hhcchhHHHHHHHHHHHhhhcC--------CCCCcCchHHHHHHHHHHH
Q psy12978 25 MELDNVTESSMKILNVEFSSVN--------PQQAEGEDELKKRQLMELA 65 (210)
Q Consensus 25 ~D~qn~ae~kLkkAve~I~~LL--------vP~pEg~DeLKR~QLrELA 65 (210)
.|+...++.+|++|||-..+-+ ++.| -+=+|+.|..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~IRl~iP---TEERRkeLvK~a 55 (123)
T 3lhp_S 10 SDIRKDAEVRMDKAVEAFKNKLDKFKAAVRKVFP---TEERIKDWLKIV 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC---CHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCCCeEEeeCC---CHHHHHHHHHHH
Confidence 4777889999999998765544 5666 444566665554
No 9
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}
Probab=13.89 E-value=1.1e+02 Score=25.95 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=35.8
Q ss_pred EEEEEEeeehhcchhHHHHHHHHHH---HhhhcCCCCCcCchHHHHHHHH
Q psy12978 16 KISFSFQYFMELDNVTESSMKILNV---EFSSVNPQQAEGEDELKKRQLM 62 (210)
Q Consensus 16 ~~~~~~~~f~D~qn~ae~kLkkAve---~I~~LLvP~pEg~DeLKR~QLr 62 (210)
||-.|+|.|..+......+++++.+ .|-|+.+..-..+|-++=.+.+
T Consensus 146 kiI~S~Hdf~~tp~el~~~~~~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~ 195 (259)
T 3l9c_A 146 NLILSYHNFEETPENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYT 195 (259)
T ss_dssp SEEEEEEESSCCCTTHHHHHHHHHHTCCSEEEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEEecCCCHHHHHHHHHHH
Confidence 7889999999999878888888765 4667777666666766655554
No 10
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=11.77 E-value=2e+02 Score=23.05 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=21.7
Q ss_pred HHHHHHhhhcCCCCCcCchHHHHHHHHHH
Q psy12978 36 KILNVEFSSVNPQQAEGEDELKKRQLMEL 64 (210)
Q Consensus 36 kkAve~I~~LLvP~pEg~DeLKR~QLrEL 64 (210)
.|..|.+..+-+|........||+.|..-
T Consensus 76 Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~ 104 (135)
T 1i6z_A 76 MKILEEIDTMVLPEQFKDSRLKRKNLVKK 104 (135)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCccHHHHHHHHHHHHHH
Confidence 34456666666888888888999998864
Done!