RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12978
         (210 letters)



>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 134

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 51  EGEDELKKRQLMELAIINGTYRDNNAK 77
           EGED LKK +LMELAI+NGTYRD N K
Sbjct: 104 EGEDSLKKMKLMELAILNGTYRDANLK 130


>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 122

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 51  EGEDELKKRQLMELAIINGTYR 72
           E +++L+K QL ELA +NGT R
Sbjct: 101 EDQNDLRKMQLRELARLNGTLR 122


>d1n67a2 b.2.3.4 (A:370-560) Clumping factor A {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 191

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 6/34 (17%), Positives = 8/34 (23%)

Query: 45 VNPQQAEGEDELKKRQLMELAIINGTYRDNNAKV 78
          VNP        +    L      N      N  +
Sbjct: 31 VNPSGDNVIAPVLTGNLKPNTDSNALIDQQNTSI 64


>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
           flexneri [TaxId: 623]}
          Length = 255

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 104 RRMAVAAAQETQRLLSPGMP-GMATQLRTPTATPLGAPLILSPRIPAIPTSAASLLNGSP 162
             M +  AQ   RLL PG   G +   R  +A     P     R           + G P
Sbjct: 33  AMMGLHGAQLLDRLLEPGDIVGFSWG-RAVSALVENLPQAGQSRQLIC-----VPIIGGP 86

Query: 163 GGQLMNPADAHQLIYTPYADYANYAALTGSPLLTEYASADHS 204
            G+L +    + L Y+  A     + L   P L +     + 
Sbjct: 87  SGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNG 128


>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 188

 Score = 24.9 bits (54), Expect = 7.3
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 97  AACDEEWRRMAVAAAQETQRLLSP--GMPGMATQLRTPTA 134
               ++W  +   +   T R+L P  G+  + + +    A
Sbjct: 75  VKLFDDWSNLGSISELSTSRVLDPAAGVTQLLSGVTNLQA 114


>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A
           virus, different strains [TaxId: 11320]}
          Length = 387

 Score = 24.8 bits (54), Expect = 8.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 127 TQLRTPTATPLGAPLILSPRIPAIPTSAASLLNG 160
           T  RT     LG P  L  +   I  S++S  +G
Sbjct: 71  TPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDG 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,838
Number of extensions: 30946
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 8
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)