BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12980
(609 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14118|DAG1_HUMAN Dystroglycan OS=Homo sapiens GN=DAG1 PE=1 SV=2
Length = 895
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 175/355 (49%), Gaps = 29/355 (8%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+DHED T KLKL L ++ + W+Q
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSWVQ 553
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIV-KSP----GPAYYSASFS 325
F++ +Q YG+P + +G+ EY + D GL A D E+ V + P PA + A F
Sbjct: 554 FNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHRRPQGDRAPARFKAKF- 612
Query: 326 LTLARPSSTFAQPAAQRAFLEKLAGLFGDRNASKIVNIEFEDNPQEPGKSTVVRWANRTL 385
+ P+ + A ++KLA FGDRN S I S VV W N TL
Sbjct: 613 --VGDPALVLNDIHKKIALVKKLAFAFGDRNCSTITLQNITRG------SIVVEWTNNTL 664
Query: 386 ASNVECPETTIGLLREVLLTEDDLLQESLVTSLEKDYGVKHASVIPTGICEGLK-----T 440
CP+ I L + +D + + +LE D+ +V +G C L+
Sbjct: 665 PLE-PCPKEQIAGLSRRIAEDDGKPRPAFSNALEPDFKATSITVTGSGSCRHLQFIPVVP 723
Query: 441 PLHTPGVERKPAYSGKNTPANASVE--YLITFVAPLVVIVIMLLCAALIACLLYRRRHTG 498
P P E P P +S + YL T + P VV+ +LL A +IA + YR++ G
Sbjct: 724 PRRVPS-EAPPTEVPDRDPEKSSEDDVYLHTVI-PAVVVAAILLIAGIIAMICYRKKRKG 781
Query: 499 KMSVGNGVDSGILIRSKGIPVIFQDELEERLEVSSGTKSPIILKEEKPPLPPPEY 553
K+++ D I+ KG+P+IF DEL++ S + +IL+EEK PLPPPEY
Sbjct: 782 KLTLE---DQATFIK-KGVPIIFADELDDSKPPPSSSMP-LILQEEKAPLPPPEY 831
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVISNTTTGQ 170
NQ P ++N ID ++A G +P DTF+DHED T KLKL L ++ ++ + Q
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSWVQ 553
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 5 QIFVYNILLDLYGNSGNSSYITVRSVVTNKEPYVFTYTNESLPRNECPTAQINNLLEVIS 64
+I + L +G+ N S IT++++ V +TN +LP CP QI L I+
Sbjct: 626 KIALVKKLAFAFGDR-NCSTITLQNITRGS--IVVEWTNNTLPLEPCPKEQIAGLSRRIA 682
Query: 65 NTTTGQAKPVLTRALGRLMTVKNITWRGIGHC 96
G+ +P + AL +IT G G C
Sbjct: 683 E-DDGKPRPAFSNALEPDFKATSITVTGSGSC 713
>sp|Q28685|DAG1_RABIT Dystroglycan OS=Oryctolagus cuniculus GN=DAG1 PE=1 SV=1
Length = 895
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 176/354 (49%), Gaps = 27/354 (7%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+D ED T KLKL L ++ + W+Q
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDKEDTTTDKLKLTLKLREQQLVGEKSWVQ 553
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIV-KSP----GPAYYSASFS 325
F++ +Q YG+P + +G+ EY + D GL A D E+ V K P PA + A F
Sbjct: 554 FNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHKRPQGDKAPARFKAKF- 612
Query: 326 LTLARPSSTFAQPAAQRAFLEKLAGLFGDRNASKIVNIEFEDNPQEPGKSTVVRWANRTL 385
+ P+ + A ++KLA FGDRN S + S VV W N TL
Sbjct: 613 --VGDPAPVVNDIHKKIALVKKLAFAFGDRNCSTVTLQNITRG------SIVVEWTNNTL 664
Query: 386 ASNVECPETTIGLLREVLLTEDDLLQESLVTSLEKDYGVKHASVIPTGICEGLK-TPLHT 444
CP+ I L + ++ + + +LE D+ ++ +G C L+ P+
Sbjct: 665 PLE-PCPKEQITGLSRRIAEDNGQPRPAFTNALEPDFKATSIAITGSGSCRHLQFIPVAP 723
Query: 445 PGVERK---PAYSGKNTPANASVE--YLITFVAPLVVIVIMLLCAALIACLLYRRRHTGK 499
PG+ P P +S + YL T + P VV+ +LL A +IA + YR++ GK
Sbjct: 724 PGIPSSVTPPTEVPDRDPEKSSEDDVYLHTVI-PAVVVAAILLIAGIIAMICYRKKRKGK 782
Query: 500 MSVGNGVDSGILIRSKGIPVIFQDELEERLEVSSGTKSPIILKEEKPPLPPPEY 553
+++ D I+ KG+P+IF DEL++ S + +IL+EEK PLPPPEY
Sbjct: 783 LTLE---DQATFIK-KGVPIIFADELDDSKPPPSSSMP-LILQEEKAPLPPPEY 831
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVI 163
NQ P ++N ID ++A G +P DTF+D ED T KLKL L ++ ++
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDKEDTTTDKLKLTLKLREQQLV 546
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 5 QIFVYNILLDLYGNSGNSSYITVRSVVTNKEPYVFTYTNESLPRNECPTAQINNLLEVIS 64
+I + L +G+ N S +T++++ V +TN +LP CP QI L I+
Sbjct: 626 KIALVKKLAFAFGDR-NCSTVTLQNITRGS--IVVEWTNNTLPLEPCPKEQITGLSRRIA 682
Query: 65 NTTTGQAKPVLTRALGRLMTVKNITWRGIGHC 96
GQ +P T AL +I G G C
Sbjct: 683 E-DNGQPRPAFTNALEPDFKATSIAITGSGSC 713
>sp|Q62165|DAG1_MOUSE Dystroglycan OS=Mus musculus GN=Dag1 PE=1 SV=4
Length = 893
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/352 (34%), Positives = 177/352 (50%), Gaps = 23/352 (6%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ + W+Q
Sbjct: 492 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQ 551
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIV-KSPGPAYYSASFSLTLA 329
F++ +Q YG+P + +G+ EY + D GL A D E+ V K P A F LA
Sbjct: 552 FNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHKRPQGDKAPARFKARLA 611
Query: 330 -RPSSTFAQPAAQRAFLEKLAGLFGDRNASKIVNIEFEDNPQEPGKSTVVRWANRTLASN 388
P+ + A ++KLA FGDRN S I S VV W N TL
Sbjct: 612 GDPAPVVNDIHKKIALVKKLAFAFGDRNCSSITLQNITRG------SIVVEWTNNTLPLE 665
Query: 389 VECP-ETTIGLLREVLLTEDDLLQESLVTSLEKDYGVKHASVIPTGICEGLK-TPLH--T 444
CP E IGL R + E+ + + +LE D+ +V +G C L+ P+ +
Sbjct: 666 -PCPKEQIIGLSRRI-ADENGKPRPAFSNALEPDFKALSIAVTGSGSCRHLQFIPVAPPS 723
Query: 445 PGVERKPAYSGKNTPANASVE---YLITFVAPLVVIVIMLLCAALIACLLYRRRHTGKMS 501
PG PA + S E YL T + P VV+ +LL A +IA + YR++ GK++
Sbjct: 724 PGSSAAPATEVPDRDPEKSSEDDVYLHTVI-PAVVVAAILLIAGIIAMICYRKKRKGKLT 782
Query: 502 VGNGVDSGILIRSKGIPVIFQDELEERLEVSSGTKSPIILKEEKPPLPPPEY 553
+ D I+ KG+P+IF DEL++ S + +IL+EEK PLPPPEY
Sbjct: 783 LE---DQATFIK-KGVPIIFADELDDSKPPPSSSMP-LILQEEKAPLPPPEY 829
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVISNTTTGQ 170
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ ++ + Q
Sbjct: 492 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQ 551
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 5 QIFVYNILLDLYGNSGNSSYITVRSVVTNKEPYVFTYTNESLPRNECPTAQINNLLEVIS 64
+I + L +G+ N S IT++++ V +TN +LP CP QI L I+
Sbjct: 624 KIALVKKLAFAFGDR-NCSSITLQNITRGS--IVVEWTNNTLPLEPCPKEQIIGLSRRIA 680
Query: 65 NTTTGQAKPVLTRALGRLMTVKNITWRGIGHCED------SPPPPVVKVKLENQVP 114
+ G+ +P + AL +I G G C +PP P +VP
Sbjct: 681 D-ENGKPRPAFSNALEPDFKALSIAVTGSGSCRHLQFIPVAPPSPGSSAAPATEVP 735
>sp|O18738|DAG1_BOVIN Dystroglycan OS=Bos taurus GN=DAG1 PE=1 SV=1
Length = 895
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 172/353 (48%), Gaps = 25/353 (7%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ + W+Q
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQ 553
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIVK-----SPGPAYYSASFS 325
F++ +Q YG+P + +G+ EY + D GL A D E+ V PA + A +
Sbjct: 554 FNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHRRPQGDKAPARFKAKLT 613
Query: 326 LTLARPSSTFAQPAAQRAFLEKLAGLFGDRNASKIVNIEFEDNPQEPGKSTVVRWANRTL 385
P++ + A ++KLA FGDRN S I S VV W N TL
Sbjct: 614 ---GDPAAVTNDIHKKIALVKKLAFAFGDRNCSTITLQNITRG------SIVVEWTNNTL 664
Query: 386 ASNVECPETTIGLLREVLLTEDDLLQESLVTSLEKDYGVKHASVIPTGICEGLK-----T 440
CP+ I L + +D + + V +LE D+ +V +G C L+
Sbjct: 665 PLE-PCPKEQITALSRRIAEDDGKPRGAFVNALEPDFQAMSITVTGSGSCRHLQFVPVAP 723
Query: 441 PLHTPGVERKPAYSGKNTPANASVEYLITFVAPLVVIVIMLLCAALIACLLYRRRHTGKM 500
P+ P ++ ++ + + V P VV+ +LL A +IA + YR++ GK+
Sbjct: 724 PMRVPSEAPATEVPDRDPEKSSEDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKL 783
Query: 501 SVGNGVDSGILIRSKGIPVIFQDELEERLEVSSGTKSPIILKEEKPPLPPPEY 553
++ D I+ KG+P+IF DEL++ S + +IL+EEK PLPPPEY
Sbjct: 784 TLE---DQATFIK-KGVPIIFADELDDSKPPPSSSMP-LILQEEKAPLPPPEY 831
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVISNTTTGQ 170
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ ++ + Q
Sbjct: 494 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQ 553
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 5 QIFVYNILLDLYGNSGNSSYITVRSVVTNKEPYVFTYTNESLPRNECPTAQINNLLEVIS 64
+I + L +G+ N S IT++++ V +TN +LP CP QI L I+
Sbjct: 626 KIALVKKLAFAFGDR-NCSTITLQNITRGS--IVVEWTNNTLPLEPCPKEQITALSRRIA 682
Query: 65 NTTTGQAKPVLTRALGRLMTVKNITWRGIGHC 96
G+ + AL +IT G G C
Sbjct: 683 E-DDGKPRGAFVNALEPDFQAMSITVTGSGSC 713
>sp|Q9TSZ6|DAG1_CANFA Dystroglycan OS=Canis familiaris GN=DAG1 PE=3 SV=1
Length = 892
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 174/360 (48%), Gaps = 39/360 (10%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+DHED T KLKL L ++ + W+Q
Sbjct: 491 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSWVQ 550
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIV-KSP----GPAYYSASFS 325
F++ +Q YG+P + +G+ EY + D GL A D E+ V K P PA + A F
Sbjct: 551 FNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHKRPQGDRAPARFKAKF- 609
Query: 326 LTLARPSSTFAQPAAQRAFLEKLAGLFGDRNASKIVNIEFEDNPQEPGKSTVVRWANRTL 385
+ P + + ++KLA FGDRN S I S +V W N TL
Sbjct: 610 --MGDPVPVVNDIHKKISLVKKLAFAFGDRNCSTITLQNITRG------SILVEWTNNTL 661
Query: 386 ASNVECPETTIGLLREVLLTEDDLLQESLVTSLEKDYGVKHASVIPTGICEGL------- 438
CP+ I L + + ++ + + +LE D+ +V +G C L
Sbjct: 662 PLE-PCPKEQIMALSQRIAEDNGKPRAAFSNALEPDFQASSIAVTGSGSCRHLQFIPVAP 720
Query: 439 --KTPLHTPGV---ERKPAYSGKNTPANASVEYLITFVAPLVVIVIMLLCAALIACLLYR 493
+ P P +R P S ++ + + V P VV+ +LL A +IA + YR
Sbjct: 721 PRRVPSEVPSTDVPDRDPEKSSED-------DVYLHTVIPAVVVAAILLIAGIIAMICYR 773
Query: 494 RRHTGKMSVGNGVDSGILIRSKGIPVIFQDELEERLEVSSGTKSPIILKEEKPPLPPPEY 553
++ GK+++ D I+ KG+P+IF DEL++ S + +IL+EEK PLPPPEY
Sbjct: 774 KKRKGKLTLE---DQATFIK-KGVPIIFADELDDSKPPPSSSMP-LILQEEKAPLPPPEY 828
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVISNTTTGQ 170
NQ P ++N ID ++A G +P DTF+DHED T KLKL L ++ ++ + Q
Sbjct: 491 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSWVQ 550
>sp|Q29243|DAG1_PIG Dystroglycan (Fragment) OS=Sus scrofa GN=DAG1 PE=2 SV=1
Length = 128
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ + W+Q
Sbjct: 38 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQ 97
Query: 271 FDAKNQEFYGIPQLTDLGRREYQLVCKDSNG 301
F++ +Q YG+P + +G+ Y + G
Sbjct: 98 FNSNSQLMYGLPDSSHVGKHXYFMHATGKGG 128
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 111 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVI 163
NQ P ++N ID ++A G +P DTF+D+ED T KLKL L ++ ++
Sbjct: 38 NQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLV 90
>sp|P35903|ACHC_ACHFU Achacin OS=Achatina fulica PE=1 SV=1
Length = 531
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 98/244 (40%), Gaps = 41/244 (16%)
Query: 126 ISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYV----ISNT--TTGQAKPVLTR-- 177
I G L H+P + E GG R K H V +SN T G KP TR
Sbjct: 72 IGGRLFTTHLPNVPDLNLESGGMRYFKNHHKIFGVLVKELNLSNKEFTEGFGKPGRTRFF 131
Query: 178 ALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPE 237
A G+ +T++ +T P + + NQ L + L GE+L +P+
Sbjct: 132 ARGKSLTLEEMT-------SGDVPYNLSTEEKANQANLAGYYLKKLTGFDGEVLT--IPQ 182
Query: 238 DTFFDHEDGGTRKLKLHLMTMDRT-----TIPPTHWLQ-FDAKNQEFY-GIPQ----LTD 286
+ +DG KL+ +T+D T +L+ F N EF G+ L +
Sbjct: 183 ANKLEVDDG----RKLYQLTVDEALDKVGTPEGKEFLKAFSTGNTEFIEGVSAVNYFLVE 238
Query: 287 LGRREYQLVCKDSNGLMANDGLEVIVKSPGPAYY--SASFSLTLARPSSTFAQPAAQRAF 344
LG RE ++ L DG+ + ++ A+ S S +LTL R + ++
Sbjct: 239 LGEREEEI-------LTLTDGMSALPQALADAFLKSSTSHALTLNRKLQSLSKTDNGLYL 291
Query: 345 LEKL 348
LE L
Sbjct: 292 LEFL 295
>sp|Q96FK6|WDR89_HUMAN WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=1 SV=1
Length = 387
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 90 WRGIGHCEDSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTR 149
W + H + PV ++ +++ ++ D L+ + G L YH DT H GGT
Sbjct: 243 WWDLNHLD--TDEPVTRLNIQDVREVVNMKEDALDYLIGGL--YHEKTDTL--HVIGGTN 296
Query: 150 KLKLHLMTMDRYVISNTTTGQAKPVLTRALGRLMTVKNITW 190
K ++HLM +++ T+ Q G TV++ W
Sbjct: 297 KGRIHLMNCSMSGLTHVTSLQG--------GHAATVRSFCW 329
>sp|Q4R815|LAS2_MACFA Lung adenoma susceptibility protein 2 homolog OS=Macaca
fascicularis GN=LAS2 PE=2 SV=1
Length = 322
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 389 VECPETTIGLLREVLLTEDDLLQESLVTSLEKDY-GVKHASVIPTGICEGLKTPLHTPGV 447
+ C TI + + LT DDLL+ S Y G H + C G L + V
Sbjct: 108 ISCRRQTINDIDSMSLTTDDLLRLPADGSFSYTYVGPSHRTNKKNKKCHGR---LGSSDV 164
Query: 448 ERKPAYSGKNTPANASVEYLI 468
E+ P + G +TP +E LI
Sbjct: 165 EKNPNFQGPSTPVGDKIELLI 185
>sp|Q6X862|PC11X_GORGO Protocadherin-11 X-linked OS=Gorilla gorilla gorilla GN=PCDH11X
PE=3 SV=1
Length = 1347
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 390 ECPETTIGLLREVLLTEDDLLQ-----ESLVTSLEKDYGVKHASVIPTGICEGLKTPLHT 444
+C T +GL R VL+ +DL Q ++ +L + V +A++I + + ++ P+ T
Sbjct: 738 KCDVTDLGLHR-VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPV-T 795
Query: 445 PGVERKPAYSGKNTPANASVEYLITFVAPLVVIVIMLLCAALIAC 489
P E + ++P N V+ L+ VA + +V+++ A++ C
Sbjct: 796 PNTE----IADVSSPTNDYVKILVAAVAGTITVVVVIFITAVVRC 836
>sp|Q5RBZ3|WDR89_PONAB WD repeat-containing protein 89 OS=Pongo abelii GN=WDR89 PE=2 SV=1
Length = 387
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 90 WRGIGHCEDSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTR 149
W + H + PV ++ +++ ++ D L+ + G L YH DT H GGT
Sbjct: 243 WWDLNHLD--TDEPVTRLNIQDVREVVNMKEDALDYLIGGL--YHEKTDTL--HVIGGTN 296
Query: 150 KLKLHLMTMDRYVISNTTTGQAKPVLTRALGRLMTVKNITW 190
K ++HLM +++ T+ Q G TV++ W
Sbjct: 297 KGRIHLMNCSVSGLTHVTSLQG--------GHAATVRSFCW 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,904,471
Number of Sequences: 539616
Number of extensions: 11185526
Number of successful extensions: 39044
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 37878
Number of HSP's gapped (non-prelim): 993
length of query: 609
length of database: 191,569,459
effective HSP length: 123
effective length of query: 486
effective length of database: 125,196,691
effective search space: 60845591826
effective search space used: 60845591826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)