Query psy12980
Match_columns 609
No_of_seqs 208 out of 253
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 16:04:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u2c_A Dystroglycan; IG-like d 99.7 3.9E-17 1.4E-21 163.3 13.8 138 219-366 7-172 (246)
2 1u2c_A Dystroglycan; IG-like d 98.8 9.2E-10 3.1E-14 110.3 2.9 91 118-212 6-104 (246)
3 3q2v_A Cadherin-1; cell adhesi 98.1 1.9E-05 6.4E-10 87.6 13.1 231 74-314 178-433 (550)
4 3q2w_A Cadherin-2; cell adhesi 98.0 1.6E-05 5.6E-10 88.2 9.5 232 74-315 177-439 (559)
5 3mvs_A Cadherin-23, otocadheri 97.8 0.00013 4.5E-09 70.8 11.8 184 110-314 2-205 (210)
6 2a62_A Cadherin-8; extracellul 97.7 0.00011 3.8E-09 76.3 9.6 212 74-300 62-300 (322)
7 1l3w_A EP-cadherin, C-cadherin 97.7 0.00012 3.9E-09 81.2 10.2 230 74-315 293-538 (546)
8 3q2v_A Cadherin-1; cell adhesi 97.7 0.00016 5.5E-09 80.1 11.3 231 74-315 65-326 (550)
9 1l3w_A EP-cadherin, C-cadherin 97.6 6.1E-05 2.1E-09 83.4 7.6 230 74-314 184-438 (546)
10 3q2w_A Cadherin-2; cell adhesi 97.4 0.00015 5E-09 80.5 7.0 232 74-314 290-543 (559)
11 1q55_A EP-cadherin, C-cadherin 97.4 0.00016 5.4E-09 84.8 7.6 230 74-314 333-587 (880)
12 3ubh_A Neural-cadherin; cell a 97.4 0.0049 1.7E-07 65.9 17.6 220 82-314 73-316 (419)
13 2yrl_A KIAA1837 protein; PKD d 97.3 0.0012 4.1E-08 57.7 10.3 30 287-316 68-97 (102)
14 3ubf_A Neural-cadherin; cell a 97.3 0.012 4.2E-07 60.3 18.6 218 81-314 69-311 (316)
15 1q55_A EP-cadherin, C-cadherin 97.2 0.0009 3.1E-08 78.4 10.2 229 74-314 442-686 (880)
16 3lnd_A CDH6 protein, cadherin 96.9 0.0039 1.3E-07 60.3 10.0 103 201-313 90-206 (207)
17 3ubh_A Neural-cadherin; cell a 96.9 0.0066 2.3E-07 64.8 12.6 215 77-313 176-417 (419)
18 3ppe_A Vascular endothelial ca 96.9 0.015 5.2E-07 56.0 13.9 151 141-313 26-202 (203)
19 2a4e_A Cadherin-11; dimer, cal 96.8 0.01 3.5E-07 57.9 12.0 102 203-314 93-208 (215)
20 3qrb_A Cadherin-1; cell adhesi 96.6 0.026 9.1E-07 54.5 13.3 102 201-313 92-212 (213)
21 3k5r_A Cadherin 13; mouse, str 96.5 0.011 3.8E-07 57.4 10.1 107 203-313 94-217 (218)
22 2a62_A Cadherin-8; extracellul 96.5 0.015 5.2E-07 60.1 11.5 95 203-314 92-207 (322)
23 2ee0_A Protocadherin-9; Ca dom 95.9 0.0093 3.2E-07 52.5 5.6 95 207-313 4-111 (114)
24 2qvi_A Cadherin-2; beta barrel 95.9 0.03 1E-06 54.5 9.5 100 203-313 94-214 (215)
25 3ubf_A Neural-cadherin; cell a 95.7 0.047 1.6E-06 55.9 10.5 97 202-313 91-206 (316)
26 2x2u_A Proto-oncogene tyrosine 95.6 0.048 1.6E-06 54.2 9.8 108 201-314 113-236 (246)
27 2e7m_A Protein KIAA0319; PKD d 95.5 0.073 2.5E-06 47.6 9.8 91 219-319 10-110 (113)
28 2yhg_A SDE_182CT, cellulose-bi 95.4 0.082 2.8E-06 57.4 11.6 96 209-313 329-437 (437)
29 3pdd_A Glycoside hydrolase, fa 95.3 0.34 1.2E-05 46.5 14.5 41 277-320 145-186 (190)
30 4apx_B Protocadherin-15, otoca 95.0 0.24 8.2E-06 49.3 12.9 112 203-315 113-238 (242)
31 2yst_A Protocadherin-7; BH-PCD 94.5 0.046 1.6E-06 48.1 5.5 102 207-314 4-113 (119)
32 2y72_A Collagenase, collagenas 94.1 0.66 2.2E-05 38.6 11.6 74 224-314 12-85 (85)
33 3qc5_X Platelet binding protei 93.8 2.8 9.6E-05 43.9 17.8 135 209-354 154-313 (360)
34 2kpn_A Bacillolysin; solution 91.3 0.6 2.1E-05 41.0 7.7 80 210-315 7-86 (103)
35 1zxk_A Cadherin-8; strand dime 90.7 1.7 5.9E-05 37.0 10.0 66 241-312 26-96 (98)
36 2c4x_A Endoglucanase, ctcel9D- 90.2 1.3 4.5E-05 44.8 10.2 93 209-316 5-97 (260)
37 1zvn_A Mn-cadherin; strand dim 87.9 3.6 0.00012 35.1 9.9 66 241-312 27-97 (99)
38 3mvs_A Cadherin-23, otocadheri 87.1 0.41 1.4E-05 46.1 3.8 138 73-214 68-210 (210)
39 2omz_B Epithelial-cadherin; le 86.1 3.4 0.00012 35.5 8.8 62 250-312 37-102 (105)
40 3qrb_A Cadherin-1; cell adhesi 85.6 7.4 0.00025 37.1 11.9 70 242-314 27-100 (213)
41 1ncg_A N-cadherin; cell adhesi 84.1 3.4 0.00012 35.7 7.9 64 250-314 35-102 (110)
42 2c4x_A Endoglucanase, ctcel9D- 83.8 9.6 0.00033 38.4 12.2 40 266-306 113-152 (260)
43 3k6d_A T-cadherin; cell adhesi 83.5 5.5 0.00019 33.8 8.9 60 250-312 32-95 (99)
44 3k6i_A T-cadherin; cell adhesi 81.3 10 0.00035 32.0 9.7 62 250-312 32-95 (99)
45 3pe9_A Fibronectin(III)-like m 81.3 1.8 6E-05 37.6 4.9 33 287-319 60-93 (98)
46 3ppe_A Vascular endothelial ca 81.0 6.9 0.00024 37.2 9.6 66 241-314 26-96 (203)
47 3k6f_A T-cadherin; cell adhesi 80.9 8.7 0.0003 32.6 9.1 62 250-312 33-96 (100)
48 2yqg_A Desmoglein-2, HDGC; cad 79.9 3.4 0.00012 36.5 6.4 73 241-314 36-112 (123)
49 2x2u_A Proto-oncogene tyrosine 79.5 0.72 2.5E-05 45.7 2.1 132 84-217 94-245 (246)
50 3k5r_A Cadherin 13; mouse, str 78.1 11 0.00037 36.1 9.9 64 250-314 33-100 (218)
51 2k9y_A Ephrin type-A receptor 74.7 1.6 5.5E-05 31.6 2.3 23 474-496 18-40 (41)
52 2y3u_A Collagenase, collagenas 73.9 0.67 2.3E-05 53.7 0.0 29 286-314 757-785 (785)
53 2a4e_A Cadherin-11; dimer, cal 72.5 19 0.00065 34.6 10.0 68 241-314 27-99 (215)
54 2yhg_A SDE_182CT, cellulose-bi 72.2 15 0.00053 39.7 10.1 46 109-157 329-380 (437)
55 2jo1_A Phospholemman; FXYD1, N 71.1 1.7 5.8E-05 35.7 1.8 44 471-514 17-62 (72)
56 2qvi_A Cadherin-2; beta barrel 70.8 22 0.00074 34.1 10.0 64 250-314 33-100 (215)
57 2l2t_A Receptor tyrosine-prote 67.7 2.7 9.3E-05 31.5 2.1 15 485-499 28-42 (44)
58 2ks1_B Epidermal growth factor 67.0 3 0.0001 31.3 2.3 12 486-497 30-41 (44)
59 1zza_A Stannin, AG8_1; helix, 63.5 4.9 0.00017 33.3 3.1 13 483-495 28-40 (90)
60 2klu_A T-cell surface glycopro 59.9 3.6 0.00012 33.4 1.7 24 478-501 18-45 (70)
61 2jwa_A Receptor tyrosine-prote 58.7 4.6 0.00016 30.3 1.9 15 483-497 26-41 (44)
62 3pdd_A Glycoside hydrolase, fa 58.3 46 0.0016 31.4 9.5 37 287-325 60-97 (190)
63 2yst_A Protocadherin-7; BH-PCD 57.6 5.5 0.00019 34.6 2.6 62 106-170 3-72 (119)
64 4a2l_A BT_4663, two-component 54.3 32 0.0011 38.6 8.9 57 250-316 725-784 (795)
65 2yrl_A KIAA1837 protein; PKD d 53.8 22 0.00075 30.4 5.8 44 110-158 3-47 (102)
66 2kxg_A Aspartic protease inhib 53.4 24 0.00082 30.2 5.9 48 276-325 44-92 (95)
67 2p9r_A Alpha-2-M, alpha-2-macr 52.8 21 0.00071 30.0 5.4 58 250-311 37-97 (102)
68 1s7q_A H-2KB, H-2 class I hist 51.3 3.2 0.00011 43.3 0.0 14 486-499 302-316 (348)
69 2k1k_A Ephrin type-A receptor 48.9 8.1 0.00028 28.0 1.8 15 472-486 13-27 (38)
70 2ee0_A Protocadherin-9; Ca dom 48.6 11 0.00039 32.4 3.2 62 106-170 3-73 (114)
71 2jp3_A FXYD domain-containing 47.2 5.6 0.00019 32.3 0.9 24 470-493 17-40 (67)
72 3ott_A Two-component system se 46.3 46 0.0016 37.1 8.5 71 231-314 674-748 (758)
73 3c12_A FLGD, flagellar protein 45.3 35 0.0012 30.6 6.0 18 288-305 83-100 (138)
74 2jrw_A Cyclic extended PEP.1; 45.1 7 0.00024 25.4 0.9 11 584-594 13-23 (26)
75 2wgn_B Inhibitor of cysteine p 39.0 2.2E+02 0.0074 25.6 11.1 75 223-314 37-113 (132)
76 1cd1_A CD1, MCD1D.1; immunolog 38.3 6.7 0.00023 40.1 0.0 9 376-384 215-223 (315)
77 2l6w_A Beta-type platelet-deri 42.6 7.5 0.00026 28.4 0.0 30 470-500 9-38 (39)
78 1iij_A ERBB-2 receptor protein 35.2 10 0.00036 27.1 0.6 14 483-496 22-35 (35)
79 3rko_J NADH-quinone oxidoreduc 32.9 18 0.00062 34.7 2.1 31 470-500 137-167 (184)
80 3lnd_A CDH6 protein, cadherin 32.9 20 0.00068 34.0 2.4 88 73-160 61-153 (207)
81 2knc_A Integrin alpha-IIB; tra 32.4 34 0.0012 26.6 3.2 17 484-500 31-47 (54)
82 4fxw_B Splicing factor 1; UHM, 30.6 38 0.0013 30.6 3.6 60 492-558 6-84 (124)
83 2xwx_A GBPA, glcnac-binding pr 29.5 1.5E+02 0.0052 31.5 8.7 84 227-313 300-390 (391)
84 2c9r_A COPC, copper resistance 29.3 1.7E+02 0.0059 24.9 7.5 61 253-313 36-102 (102)
85 3v9f_A Two-component system se 28.8 85 0.0029 35.0 7.0 71 231-314 703-776 (781)
86 2k1k_A Ephrin type-A receptor 28.7 29 0.00098 25.1 2.0 14 476-489 20-33 (38)
87 1lyq_A PCOC copper resistance 28.0 1.7E+02 0.0057 25.1 7.2 43 271-313 61-104 (104)
88 2kzw_A Uncharacterized protein 25.6 1.1E+02 0.0037 28.0 5.9 29 285-314 111-139 (145)
89 2l7y_A Putative endo-beta-N-ac 25.3 2.4E+02 0.0083 24.3 7.7 63 244-316 23-85 (98)
90 3j0c_A E1 envelope glycoprotei 23.6 30 0.001 36.7 1.9 73 420-495 363-439 (442)
91 1cid_A T cell surface glycopro 22.4 2.5E+02 0.0084 26.7 7.6 68 222-297 4-94 (177)
92 3knb_B Obscurin-like protein 1 21.8 2.5E+02 0.0085 23.0 7.1 92 211-314 11-105 (107)
93 4fqp_A Poliovirus receptor; im 21.8 3.1E+02 0.011 26.0 8.8 68 245-318 231-308 (313)
94 1afo_A Glycophorin A; integral 21.3 24 0.00083 25.8 0.4 23 471-493 11-33 (40)
95 1pi7_A VPU protein, U ORF prot 21.3 31 0.0011 24.7 1.0 17 482-498 19-35 (36)
96 3j0f_E E1 envelope glycoprotei 21.3 60 0.002 34.5 3.5 87 406-495 348-439 (439)
97 1b4r_A Protein (PKD1_human); P 20.3 1.3E+02 0.0046 24.7 4.9 27 286-313 53-79 (80)
98 2zxe_G FXYD10, phospholemman-l 20.0 49 0.0017 27.3 2.1 23 471-493 20-42 (74)
No 1
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=99.71 E-value=3.9e-17 Score=163.30 Aligned_cols=138 Identities=13% Similarity=0.197 Sum_probs=112.2
Q ss_pred ccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeecCCCCceeEEEEEEEEc
Q psy12980 219 PIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIPQLTDLGRREYQLVCKD 298 (609)
Q Consensus 219 ~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P~~~dvG~~~f~LtATD 298 (609)
.|+++.|.+|+.|+|+||.++|. |+ .++|+++.++|..|| +||+||+++++|+|+|+..|+|.|.+.|+|+|
T Consensus 7 GipD~~a~vg~~F~~tIP~~~Fs----gd--~~~y~vt~a~g~~LP--sWL~fd~~t~TfsG~P~~~D~G~~~i~VtA~~ 78 (246)
T 1u2c_A 7 GIPDGTAVVGRSFRVSIPTDLIA----SS--GEIIKVSAAGKEALP--SWLHWDPHSHILEGLPLDTDKGVHYISVSAAR 78 (246)
T ss_dssp CCCCEEEETTSCEEEECCHHHHC----CT--TEEEEEEETTSSSCC--TTEEEETTTTEEEECCCGGGCEEEEEEEEEEE
T ss_pred CCCChhhcCCcceEEECCccccC----CC--ccEEEEEecCCCCCC--cceEEcCCCCeEEeccCCCCcceEEEEEEEee
Confidence 48999999999999999999999 44 456666668899999 99999999999999999999999999999983
Q ss_pred -----CCCCeeEeeEEEEEECC-C----------------------CCCcceEEEEEecCCCCCcCchHHHHHHHHHHHH
Q psy12980 299 -----SNGLMANDGLEVIVKSP-G----------------------PAYYSASFSLTLARPSSTFAQPAAQRAFLEKLAG 350 (609)
Q Consensus 299 -----s~G~sasd~F~V~V~~~-p----------------------~~~~~vef~L~l~~~~~~ft~~~~q~~LVekLA~ 350 (609)
+.|..++|.|+|+|.+. . ...+...+++.++.+.+++.- ..+..|++++|.
T Consensus 79 ~~~~g~~~~~asdvF~I~V~ped~~ep~~v~~~~~~~~e~~~~~C~~~epvtvltVilDa~l~kl~p-~~Rv~Ll~~~~~ 157 (246)
T 1u2c_A 79 LGANGSHVPQTSSVFSIEVYPEDHNEPQSVRAASSDPGEVVPSACAADEPVTVLTVILDADLTKMTP-KQRIDLLNRMQS 157 (246)
T ss_dssp ECTTSCEEEEEEEEEEEEEESSCCC------------------CCCTTSCEEEEEEEESCCGGGSCH-HHHHHHHHHHHH
T ss_pred ccCCCCccccccceEEEEEecCCCcchhhhhhhhcccccCccccCCCCCceEEEEEEeeCCchhCCH-HHHHHHHHHHHH
Confidence 34778999999999931 1 112223367788888788874 234899999999
Q ss_pred HhCCCCCCcEEEEeee
Q psy12980 351 LFGDRNASKIVNIEFE 366 (609)
Q Consensus 351 llGD~d~s~ItVrsI~ 366 (609)
.++.. .+++++..+-
T Consensus 158 f~~v~-~~~~~l~p~~ 172 (246)
T 1u2c_A 158 FSEVE-LHNMKLVPVV 172 (246)
T ss_dssp HHCSC-GGGCEEEECC
T ss_pred Hhccc-hhheEeeecc
Confidence 99985 4777777665
No 2
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=98.83 E-value=9.2e-10 Score=110.34 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=65.7
Q ss_pred CcCccceeecCccEEEEcCCCCcccCCCCCeeeEEEEEeccc---ceeccc--CccCcCccccccccceeeEEEeeeecc
Q psy12980 118 NPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMD---RYVISN--TTTGQAKPVLTRALGRLMTVKNITWRG 192 (609)
Q Consensus 118 ~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~ltlsl~~~d---~~~~~~--t~T~sgtp~~~d~~~~~v~v~~~~~~~ 192 (609)
-.|.|++|.+|..|+|+||+++|. ||.++|++++..++ +||.|| ++|++|+|..+|+|.+.|.|++++-..
T Consensus 6 ~GipD~~a~vg~~F~~tIP~~~Fs----gd~~~y~vt~a~g~~LPsWL~fd~~t~TfsG~P~~~D~G~~~i~VtA~~~~~ 81 (246)
T 1u2c_A 6 VGIPDGTAVVGRSFRVSIPTDLIA----SSGEIIKVSAAGKEALPSWLHWDPHSHILEGLPLDTDKGVHYISVSAARLGA 81 (246)
T ss_dssp CCCCCEEEETTSCEEEECCHHHHC----CTTEEEEEEETTSSSCCTTEEEETTTTEEEECCCGGGCEEEEEEEEEEEECT
T ss_pred cCCCChhhcCCcceEEECCccccC----CCccEEEEEecCCCCCCcceEEcCCCCeEEeccCCCCcceEEEEEEEeeccC
Confidence 368999999999999999999998 56545666654443 399997 788899999999999999999875532
Q ss_pred cc---cccCCCCCCceecccCCC
Q psy12980 193 IG---HCEDSPPPPVVKVKLENQ 212 (609)
Q Consensus 193 ~~---~~~~~~~~~tv~v~~~N~ 212 (609)
.| ..+++.|+++|...+.|+
T Consensus 82 ~g~~~~~asdvF~I~V~ped~~e 104 (246)
T 1u2c_A 82 NGSHVPQTSSVFSIEVYPEDHNE 104 (246)
T ss_dssp TSCEEEEEEEEEEEEEESSCCC-
T ss_pred CCCccccccceEEEEEecCCCcc
Confidence 22 222233444443335666
No 3
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=98.09 E-value=1.9e-05 Score=87.58 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=135.5
Q ss_pred HHHHhhccceeeeeeeeecccccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCCCCee--e
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTR--K 150 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~--~ 150 (609)
.|.+...+.|.++..+.++-|........-..+|..+|| +|+...+.-...+.|+ .--..|-.=.=.|.|.|... .
T Consensus 178 ~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~ 256 (550)
T 3q2v_A 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWK 256 (550)
T ss_dssp CCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTC
T ss_pred CCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEE
Confidence 466677888999999999644433333345677889998 9988766655566665 21111111123678877654 3
Q ss_pred EEEEEec-ccceeccc----CccCcCc--ccc--ccccceeeEEEeeeecccc-cccCCCCCCceecccCCCCceecCcc
Q psy12980 151 LKLHLMT-MDRYVISN----TTTGQAK--PVL--TRALGRLMTVKNITWRGIG-HCEDSPPPPVVKVKLENQVPLIRNPI 220 (609)
Q Consensus 151 ltlsl~~-~d~~~~~~----t~T~sgt--p~~--~d~~~~~v~v~~~~~~~~~-~~~~~~~~~tv~v~~~N~aPvv~n~i 220 (609)
++|++.. .+||-..+ +.+|.-+ ..+ -..-...++|...+..+.+ ....++..++|+|..+|++|+.....
T Consensus 257 ~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND~P~f~~~~ 336 (550)
T 3q2v_A 257 AVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAE 336 (550)
T ss_dssp EEEEESSCSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCCCCEESSSS
T ss_pred EEEEEEeCCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCCCCeEcCcc
Confidence 4566654 22333333 3344211 111 1111223444433332111 10112224667788999999987655
Q ss_pred ceeeeeeCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeec-C-CCCc-----eeE
Q psy12980 221 DHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIP-Q-LTDL-----GRR 290 (609)
Q Consensus 221 ~~~~at~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P-~-~~dv-----G~~ 290 (609)
-.+.+.++.. ...+| +-.|+|.|....++|++.. + ...|+..|+.++.++-.. + .... +.|
T Consensus 337 ~~~~v~E~~~~gt~v~~v---~A~D~D~g~n~~i~y~i~~-~-----~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y 407 (550)
T 3q2v_A 337 RRVEVPEDFGVGQEITSY---TAREPDTFMDQKITYRIWR-D-----TANWLEINPETGAIFTRAEMDREDAEHVKNSTY 407 (550)
T ss_dssp CEEEEETTCCSSCEEEEC---CEECCCCSTTCCCEEEEEE-C-----TTCCEEECTTTCEEEECSCCCTTCTTTCCSSEE
T ss_pred eEEEEecCCCCCCEEEEE---eCCCCCCCCCCCEEEEEec-C-----CCCcEEEeCCCcEEEECCccCcccccccCCCEE
Confidence 4555544432 22222 2568877654578888843 2 137999999988877543 2 2223 889
Q ss_pred EEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 291 EYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 291 ~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
.+.|+|+|.++ ++.+.++.|.|..
T Consensus 408 ~l~V~A~D~g~p~~s~~~~v~I~V~D 433 (550)
T 3q2v_A 408 VALIIATDDGSPIATGTGTLLLVLLD 433 (550)
T ss_dssp EEEEEEECCSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEEeCCCCcceeEEEEEEEEEe
Confidence 99999999887 7888888888875
No 4
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=97.95 E-value=1.6e-05 Score=88.18 Aligned_cols=232 Identities=16% Similarity=0.085 Sum_probs=129.9
Q ss_pred HHHHhhccceeeeeeeeeccccc---CCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCCCCee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHC---EDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTR 149 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~---~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~ 149 (609)
.|.+.-.+.|.+...+.++-|.- ......-..+|..+|| +|+...+.-...+.|+.. -..|-.=+=.|.|.|...
T Consensus 177 ~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~~-g~~v~~v~a~D~D~~~~~ 255 (559)
T 3q2w_A 177 GLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTP 255 (559)
T ss_dssp CCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSCS-SEEEEEEEEECCSCTTST
T ss_pred cCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCCC-CcEEEEEEEEcCCCCCCC
Confidence 56666778899999999864411 0011123567889999 998776644444555431 111111122577766532
Q ss_pred --eEEEEEecccceecc------cCccCcCc--ccc--ccccceeeEEEeeeeccc--cc--ccCCCCCCceecccCCCC
Q psy12980 150 --KLKLHLMTMDRYVIS------NTTTGQAK--PVL--TRALGRLMTVKNITWRGI--GH--CEDSPPPPVVKVKLENQV 213 (609)
Q Consensus 150 --~ltlsl~~~d~~~~~------~t~T~sgt--p~~--~d~~~~~v~v~~~~~~~~--~~--~~~~~~~~tv~v~~~N~a 213 (609)
.+++++..++....| ++.+|.-+ ..+ -..-...++|...+..+. |. ...++..++|+|..+|++
T Consensus 256 n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND~ 335 (559)
T 3q2w_A 256 AWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN 335 (559)
T ss_dssp TTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCCC
T ss_pred ceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCCC
Confidence 355555555532233 23333211 111 011122344443332111 11 011222466778899999
Q ss_pred ceecCccceeeeeeCC---eEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeec-CCCC---
Q psy12980 214 PLIRNPIDHLEAISGE---LLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIP-QLTD--- 286 (609)
Q Consensus 214 Pvv~n~i~~~~at~G~---~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P-~~~d--- 286 (609)
|+.....-.+.+.++. ....+| +-.|+|.|....++|++.. + ...|+..|+.++.++-.. +.-.
T Consensus 336 P~f~~~~~~~~v~En~~~g~~v~~v---~A~D~D~g~n~~i~Ysi~~-~-----~~~~f~Id~~tG~i~~~~~lDrE~~~ 406 (559)
T 3q2w_A 336 PYFAPNPKIIRQEEGLHAGTMLTTL---TAQDPDRYMQQNIRYTKLS-D-----PANWLKIDPVNGQITTIAVLDRESPN 406 (559)
T ss_dssp CEESSSEEEEEEESCCCTTCEEEEC---CEECSCSSSCCCEEEEEEE-C-----TTCCEEECTTTCEEEESSCCCSSSTT
T ss_pred CcccccceEEEEeCCCCCCCEEEEE---EEECCCCCCCCceEEEEcc-C-----CccceEecCCceEEEEccccCccccc
Confidence 9876544333443332 122222 2568877654478888863 2 137999999998877652 2221
Q ss_pred --ceeEEEEEEEEcCCC--CeeEeeEEEEEECC
Q psy12980 287 --LGRREYQLVCKDSNG--LMANDGLEVIVKSP 315 (609)
Q Consensus 287 --vG~~~f~LtATDs~G--~sasd~F~V~V~~~ 315 (609)
.+.|++.|+|+|.++ ++.+.++.|.|...
T Consensus 407 ~~~~~y~l~V~A~D~g~p~~ss~~~v~I~V~Dv 439 (559)
T 3q2w_A 407 VKNNIYNATFLASDNGIPPMSGTGTLQIYLLDI 439 (559)
T ss_dssp SCSSEEEEEEEEEECSSSCCEEEEEEEEEEECC
T ss_pred ccCCEEEEEEEEEcCCCCcceEEEEEEEEEEEc
Confidence 289999999999887 78888999999763
No 5
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=97.80 E-value=0.00013 Score=70.84 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=107.7
Q ss_pred CCCCCcccCcCcc--ceeecCcc---EEEEcCCCCcccCCCCCeeeEEEEEecccceecc--cCccCcCc--cccc--cc
Q psy12980 110 ENQVPLIRNPIDH--LEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRYVIS--NTTTGQAK--PVLT--RA 178 (609)
Q Consensus 110 ~N~~P~v~~pi~~--~~a~e~~~---fs~~iP~~tF~D~d~Gdt~~ltlsl~~~d~~~~~--~t~T~sgt--p~~~--d~ 178 (609)
+|.+|+.....-. ..+.|++. .-.++-| .|.|.|. +++++..+++...| +..||.-+ -.+- ..
T Consensus 2 vn~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A---~D~D~~~---~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~ 75 (210)
T 3mvs_A 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLA---RDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75 (210)
T ss_dssp CCCCCEECCGGGTSCEEEETTCCTTCEEEECCE---ECTTCCC---CEEEEESHHHHHHEEECTTTCEEEESSCCCTTTC
T ss_pred CCCCCccCCCccceEEEEeCCCCCCCEEEEEEE---EeCCCCc---EEEEEeCCCCCCcEEEeCCCCEEEECCccCCccc
Confidence 5888888777655 36667664 3344443 6777543 56666655433334 66666421 1110 01
Q ss_pred cceeeEEEeeeecccccccCCCCCCceecccCCC-CceecCccceeeeeeCC---eEEEEcCCCccccCCCCCeeeEEEE
Q psy12980 179 LGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGE---LLVYHVPEDTFFDHEDGGTRKLKLH 254 (609)
Q Consensus 179 ~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~n~i~~~~at~G~---~f~f~IP~dTF~D~eDGdT~~L~ls 254 (609)
-...++|...+..+. +. ..++|+|...|+ +|+.....-.+.+.++. ....+| +=.|+|.|..-.++|+
T Consensus 76 ~~y~l~v~a~D~~~~--~~---~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v---~A~D~D~g~n~~v~Y~ 147 (210)
T 3mvs_A 76 SEFTVEFSVSDHQGV--IT---RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIV---NATDPDLGAGGSVLYS 147 (210)
T ss_dssp CEEEEEEEEECSSCE--EE---EEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEEC---CEECCSSGGGGCEEEE
T ss_pred ceEEEEEEEEeCCCC--EE---EEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEE---EEEeCCCCCCceEEEE
Confidence 112344433332221 11 236677889998 99876654344433332 111222 1467777665568888
Q ss_pred EeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCC---CeeEeeEEEEEEC
Q psy12980 255 LMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG---LMANDGLEVIVKS 314 (609)
Q Consensus 255 l~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G---~sasd~F~V~V~~ 314 (609)
+.. + ..|...|+.++.++-. ++ ......|.+.|+|+|.+| ++++..+.|.|..
T Consensus 148 i~~--~-----~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~D 205 (210)
T 3mvs_A 148 FQP--P-----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITD 205 (210)
T ss_dssp ESS--C-----CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEEC
T ss_pred EeC--C-----CCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEc
Confidence 752 2 2588899888876643 33 334589999999999986 6888889998875
No 6
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=97.67 E-value=0.00011 Score=76.31 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=115.9
Q ss_pred HHHHhhccceeeeeeeeecccc-cCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCC---CCe
Q psy12980 74 VLTRALGRLMTVKNITWRGIGH-CEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHED---GGT 148 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~-~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~---Gdt 148 (609)
.|.+.-.+.|.++..+.++-|. -......-..+|..+|| +|+...+.-..++.|+..--..|-.=+=.|.|. |..
T Consensus 62 ~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n 141 (322)
T 2a62_A 62 RLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNS 141 (322)
T ss_dssp CCCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTS
T ss_pred cCCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcc
Confidence 4555566788898888885431 11001123567889998 898776554445555543222222223467775 665
Q ss_pred eeEEEEEecccceecccCccCcCc---ccccc--ccceeeEEEeeeecccccccCCCCCCceecccCCC-CceecCccce
Q psy12980 149 RKLKLHLMTMDRYVISNTTTGQAK---PVLTR--ALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDH 222 (609)
Q Consensus 149 ~~ltlsl~~~d~~~~~~t~T~sgt---p~~~d--~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~n~i~~ 222 (609)
..++|++..++++-.-+..||.-+ ..+-. .-...++|...+..+-...-.+...++|+|..+|+ +|+.....
T Consensus 142 ~~i~Y~i~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~-- 219 (322)
T 2a62_A 142 AKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL-- 219 (322)
T ss_dssp SCEEEEEEECTTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSE--
T ss_pred EEEEEEEccCCCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCC--
Confidence 678888876665433366666422 11110 11223444433322211011223346677889997 89876543
Q ss_pred eeeeeCCeEEEEcCCCc----------cccCCCCCeeeEEEEEeccCCCCCCCCccceecc----CCceEEee-cC-CCC
Q psy12980 223 LEAISGELLVYHVPEDT----------FFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDA----KNQEFYGI-PQ-LTD 286 (609)
Q Consensus 223 ~~at~G~~f~f~IP~dT----------F~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~----~t~tf~G~-P~-~~d 286 (609)
+.+.|++++ -.|+|.|.-..++|++...+. ..|...|. .++.++=. ++ ...
T Consensus 220 --------y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~-----~~~F~I~~d~~~~tG~i~~~~~LD~E~ 286 (322)
T 2a62_A 220 --------YHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDG-----TALFEITSDAQAQDGVIRLRKPLDFET 286 (322)
T ss_dssp --------EEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---C-----CSSBCCBCCTTTSEEEEEBCSCCCCSS
T ss_pred --------ceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCC-----CCcEEEeccCCCceEEEEECCcCCccc
Confidence 444555543 456666653468888764432 25667773 34544432 33 334
Q ss_pred ceeEEEEEEEEcCC
Q psy12980 287 LGRREYQLVCKDSN 300 (609)
Q Consensus 287 vG~~~f~LtATDs~ 300 (609)
...|++.|.|+|.+
T Consensus 287 ~~~y~l~V~A~D~g 300 (322)
T 2a62_A 287 KKSYTLKVEAANIH 300 (322)
T ss_dssp CCEEEEEEEEECCC
T ss_pred CCeEEEEEEEEECC
Confidence 58999999999975
No 7
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=97.67 E-value=0.00012 Score=81.23 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=133.6
Q ss_pred HHHHhhccceeeeeeeeecccc--c-CCCCCCCccccccCCCCCcccCcCccceeecCccEEEEcCCCCcccCCCCCeee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGH--C-EDSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRK 150 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~--~-~~~~~~~i~~v~~~N~~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~ 150 (609)
.|.+.-...|.+...+.++-|. . ......-..+|.++|++|+...+.-...+.|+..--..|-.=+-.|.|.|.-..
T Consensus 293 ~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~ 372 (546)
T 1l3w_A 293 GLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK 372 (546)
T ss_dssp CCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCC
T ss_pred cCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCCCCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCce
Confidence 3444456778888888885321 1 111123456788999999998776667777776532222222347999887777
Q ss_pred EEEEEecc-cceecccCccCcCc--ccccc-c-----cceeeEEEeeeecccccccCCCCCCceecccCCC-CceecCcc
Q psy12980 151 LKLHLMTM-DRYVISNTTTGQAK--PVLTR-A-----LGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPI 220 (609)
Q Consensus 151 ltlsl~~~-d~~~~~~t~T~sgt--p~~~d-~-----~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~n~i 220 (609)
++|++... .+|..-|..||.-+ ..+.. . ....++|...+... ....++..++|+|..+|+ +|+....
T Consensus 373 i~ysi~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~--p~~s~~~~v~I~V~DvNDn~P~f~~~- 449 (546)
T 1l3w_A 373 LSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV--SVGTGTGTLILHVLDVNDNGPVPSPR- 449 (546)
T ss_dssp EEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSS--SCCCCCEEEECCBCCCCCSCCCBSCC-
T ss_pred EEEEECCCCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCC--CCcEeEEEEEEEEEECCCCcCCccCc-
Confidence 88888763 35655576666421 11110 0 22344444333221 111222346677889997 9987632
Q ss_pred ceeeeeeCCeEEEEcCCCccccCCCCCee-eEEEEEeccCCCCCCCCccc-eeccCCceEEeecC-CCCceeEEEEEEEE
Q psy12980 221 DHLEAISGELLVYHVPEDTFFDHEDGGTR-KLKLHLMTMDRTTIPPTHWL-QFDAKNQEFYGIPQ-LTDLGRREYQLVCK 297 (609)
Q Consensus 221 ~~~~at~G~~f~f~IP~dTF~D~eDGdT~-~L~lsl~~~Dg~~l~~~sWL-~Fd~~t~tf~G~P~-~~dvG~~~f~LtAT 297 (609)
...+.++..--. | =+-.|+|.|..- .++|++...+ . ..|. ..+.....+...+. ....+.|.+.|+|+
T Consensus 450 -~~~v~e~~~~g~-v--v~A~D~D~~~n~~~~~y~l~~~~--~---~~f~i~~~g~~~~~~~~~~d~e~~~~y~l~V~a~ 520 (546)
T 1l3w_A 450 -VFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGS--D---LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 520 (546)
T ss_dssp -CEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCS--S---SSCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECC
T ss_pred -eEEEecCCCCCe-E--EEEEeCCCCCCCccEEEEECCCC--C---CCEEEeccCCceEEEecccccccCceEEEEEEEE
Confidence 232322221100 1 135677777521 2667664322 1 1343 34544456666653 45569999999999
Q ss_pred cCCCCeeEeeEEEEEECC
Q psy12980 298 DSNGLMANDGLEVIVKSP 315 (609)
Q Consensus 298 Ds~G~sasd~F~V~V~~~ 315 (609)
|.+|++.+.++.|.|...
T Consensus 521 D~g~~s~~~~v~I~V~d~ 538 (546)
T 1l3w_A 521 DAQNNPQLTVVNATVCSC 538 (546)
T ss_dssp SSSCCCEEEECCEEECSC
T ss_pred ECCcCceEEEEEEEEEec
Confidence 999999999999999753
No 8
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=97.66 E-value=0.00016 Score=80.05 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=130.9
Q ss_pred HHHHhhccceeeeeeeeecccccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCCC---Cee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDG---GTR 149 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~G---dt~ 149 (609)
.|.+.-...+.+...+.++-|.....+-.-..+|..+|| +|+.....-..++.|++.--..|..-.-.|.|.| .-.
T Consensus 65 ~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~ 144 (550)
T 3q2v_A 65 PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144 (550)
T ss_dssp CCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGG
T ss_pred ccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcce
Confidence 455666677888888888666544333334577889998 8988776666667776542222222234799988 334
Q ss_pred eEEEEEecccc----eecc--cCccCcCc---cccc--cccceeeEEEeeeecccccccCCCCCCceecccCCC-Cceec
Q psy12980 150 KLKLHLMTMDR----YVIS--NTTTGQAK---PVLT--RALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIR 217 (609)
Q Consensus 150 ~ltlsl~~~d~----~~~~--~t~T~sgt---p~~~--d~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~ 217 (609)
.++|++..++. ...| +..||.-+ ..+- ..-...++|.+.+..+- .-..+..++|+|..+|+ +|+..
T Consensus 145 ~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~--~~s~t~~v~I~V~DvNDn~P~F~ 222 (550)
T 3q2v_A 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE--GLSTTAKAVITVKDINDNAPVFN 222 (550)
T ss_dssp CCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGT--SCCCEEEEEEEEECCSCSCCEES
T ss_pred EEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCC--CeeEEEEEEEEecccCCCCCEEe
Confidence 57777765432 2234 66666421 1111 01122444444442221 12223346677889997 99876
Q ss_pred CccceeeeeeCC--eEEEEcCCCccccCCCCCee--eEEEEEeccCCCCCCCCccceec----cCCceEEee-cC-CCCc
Q psy12980 218 NPIDHLEAISGE--LLVYHVPEDTFFDHEDGGTR--KLKLHLMTMDRTTIPPTHWLQFD----AKNQEFYGI-PQ-LTDL 287 (609)
Q Consensus 218 n~i~~~~at~G~--~f~f~IP~dTF~D~eDGdT~--~L~lsl~~~Dg~~l~~~sWL~Fd----~~t~tf~G~-P~-~~dv 287 (609)
...-...+.++. ....+| +-.|+|.|... .++|++.. + ...|..++ ..++.++-. ++ ....
T Consensus 223 ~~~y~~~V~En~~g~~v~~v---~a~D~D~~~n~~~~~~ysi~~-~-----~~~~F~i~~d~~~~tG~i~~~~~LD~E~~ 293 (550)
T 3q2v_A 223 PSTYQGQVPENEVNARIATL---KVTDDDAPNTPAWKAVYTVVN-D-----PDQQFVVVTDPTTNDGILKTAKGLDFEAK 293 (550)
T ss_dssp SSEEEEEEESSCSSCCCEEE---CEECCSCTTSTTTCEEEEESS-C-----SSCCEEEEECTTTCCEEEEESSCCCTTTC
T ss_pred cceeEEEEecCCCCCEEEEE---EEEECCCCCCCcEEEEEEEEe-C-----CCCcEEEEecCCCccEEEEecccCCcccc
Confidence 544333333320 000111 14566666533 24566653 1 23677777 455555432 33 3345
Q ss_pred eeEEEEEEEEcCCC-----CeeEeeEEEEEECC
Q psy12980 288 GRREYQLVCKDSNG-----LMANDGLEVIVKSP 315 (609)
Q Consensus 288 G~~~f~LtATDs~G-----~sasd~F~V~V~~~ 315 (609)
..|++.|+|+|.++ .+.+..+.|.|...
T Consensus 294 ~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~Dv 326 (550)
T 3q2v_A 294 QQYILHVRVENEEPFEGSLVPSTATVTVDVVDV 326 (550)
T ss_dssp SEEEEEEEEEESSCCCSSCCCEEEEEEEEEECC
T ss_pred ceEEEEEEEEeCCCCCCCccceEEEEEEEEEec
Confidence 89999999999875 67888899998763
No 9
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=97.64 E-value=6.1e-05 Score=83.43 Aligned_cols=230 Identities=11% Similarity=0.049 Sum_probs=130.0
Q ss_pred HHHHhhccceeeeeeeeecccccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCC--CCCeee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHE--DGGTRK 150 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d--~Gdt~~ 150 (609)
.|.+...+.|.++..+.++-|.-......-..+|..+|| +|+...+.-...+.|+ .--..|-.=+=.|.| .|.-..
T Consensus 184 ~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~ 262 (546)
T 1l3w_A 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ 262 (546)
T ss_dssp CCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSC
T ss_pred CCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcE
Confidence 456666788999999998654322112235678889997 9988777555566665 221111111225777 454445
Q ss_pred EEEEEecccceecc--c--C--ccCcCc--cccc--cccceeeEEEeeeeccccc-ccCCCCCCceecccCCCCceecCc
Q psy12980 151 LKLHLMTMDRYVIS--N--T--TTGQAK--PVLT--RALGRLMTVKNITWRGIGH-CEDSPPPPVVKVKLENQVPLIRNP 219 (609)
Q Consensus 151 ltlsl~~~d~~~~~--~--t--~T~sgt--p~~~--d~~~~~v~v~~~~~~~~~~-~~~~~~~~tv~v~~~N~aPvv~n~ 219 (609)
++|++.. ++...| + . .+|.-+ ..+- ..-...++|...+..+.+. ...++..++|+|..+|++|+....
T Consensus 263 v~y~i~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND~P~f~~~ 341 (546)
T 1l3w_A 263 AVYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPA 341 (546)
T ss_dssp EECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCCCCEESSC
T ss_pred EEEEEEe-CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCCCCcEecc
Confidence 7777665 332233 2 2 233211 1110 1122344444333322111 112233466778899999998655
Q ss_pred cceeeeeeCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cCCC-Cc----eeE
Q psy12980 220 IDHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQLT-DL----GRR 290 (609)
Q Consensus 220 i~~~~at~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~~-dv----G~~ 290 (609)
.-.+.+.++.. ...+| +-.|+|.|....++|++... ...|+..|+.++.++-. ++.- .. +.|
T Consensus 342 ~y~~~V~En~~~g~~v~~v---~A~D~D~g~n~~i~ysi~~~------~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y 412 (546)
T 1l3w_A 342 VSRVDVSEDLSRGEKIISL---VAQDPDKQQIQKLSYFIGND------PARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 412 (546)
T ss_dssp EECCCBCTTCCSSEEEEEC---CEECCCTTCCCCEEEEECCC------SSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred eEEEEEeCCCCCCCEEEEE---EEECCCCCCCceEEEEECCC------CCCcEEEeCCcEEEEECCccCCccccCCCCEE
Confidence 43333333321 22222 24677766545788888532 13799999988887754 2322 22 789
Q ss_pred EEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 291 EYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 291 ~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
++.|+|+|.++ ++.+.++.|.|..
T Consensus 413 ~l~V~a~D~g~p~~s~~~~v~I~V~D 438 (546)
T 1l3w_A 413 TVIMLVTDDGVSVGTGTGTLILHVLD 438 (546)
T ss_dssp EEEEEEEECSSSCCCCCEEEECCBCC
T ss_pred EEEEEEEECCCCCcEeEEEEEEEEEE
Confidence 99999999864 6777788888754
No 10
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=97.43 E-value=0.00015 Score=80.55 Aligned_cols=232 Identities=13% Similarity=0.014 Sum_probs=128.1
Q ss_pred HHHHhhccceeeeeeeeecccccC------CCCCCCccccccCCCCCcccCcCccceeecCccEEEEcCCCCcccCCCCC
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHCE------DSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGG 147 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~~------~~~~~~i~~v~~~N~~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gd 147 (609)
.|.+.-.+.|.+...+.++-+.+. .....-..+|.++||+|+...+.-...+.|+..--..|-.=+-.|.|.|.
T Consensus 290 ~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~ 369 (559)
T 3q2w_A 290 PIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYM 369 (559)
T ss_dssp CCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCCCCEESSSEEEEEEESCCCTTCEEEECCEECSCSSS
T ss_pred CCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCCCCcccccceEEEEeCCCCCCCEEEEEEEECCCCCC
Confidence 444555678888888888532111 01112356788999999887765555666665322222222347999887
Q ss_pred eeeEEEEEecc-cceecccCccCcC--cccccc------ccceeeEEEeeeecccccccCCCCCCceecccCCC-Cceec
Q psy12980 148 TRKLKLHLMTM-DRYVISNTTTGQA--KPVLTR------ALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIR 217 (609)
Q Consensus 148 t~~ltlsl~~~-d~~~~~~t~T~sg--tp~~~d------~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~ 217 (609)
-..++|++... .+|..-|..||.- +..+-. .....++|.+.+...- .-.++..++|+|...|+ +|++.
T Consensus 370 n~~i~Ysi~~~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p--~~ss~~~v~I~V~DvNDn~P~f~ 447 (559)
T 3q2w_A 370 QQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIP--PMSGTGTLQIYLLDINDNAPQVL 447 (559)
T ss_dssp CCCEEEEEEECTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSS--CCEEEEEEEEEEECCSCCCCEES
T ss_pred CCceEEEEccCCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCC--cceEEEEEEEEEEEccCCCCccc
Confidence 77788887643 3566667777642 111111 1233455544332211 01112236677889998 89876
Q ss_pred CccceeeeeeCCeEEEEcCCCccccCCCCCee-eEEEEEeccCCCCCCCCccceeccCCceEEee---cCCCCceeEEEE
Q psy12980 218 NPIDHLEAISGELLVYHVPEDTFFDHEDGGTR-KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI---PQLTDLGRREYQ 293 (609)
Q Consensus 218 n~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~-~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~---P~~~dvG~~~f~ 293 (609)
..-..+.-..|.. .++| +-.|+|.|.-- .++|++....+ ...++..++..++.+.-+ ....+.|.|.+.
T Consensus 448 ~~~~~v~e~~~~~-v~~v---~A~D~D~~~n~~~~~ysl~~~~~---~~~~~f~i~~~~G~~~~~~~~~~~~~~~~~~l~ 520 (559)
T 3q2w_A 448 PQEAETCETPEPN-SINI---TALDYDIDPNAGPFAFDLPLSPV---TIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVP 520 (559)
T ss_dssp CTTCCCCSCCCTT-CEEE---CEECSCCTTSSSSCEEECCSSSH---HHHHHEEEEECSSSCEEEEECSCC-CCEEEEEE
T ss_pred CCceEEeecCCCc-EEEE---EEEcCCCCCCCCCEEEEEcCCCC---ccCCCeEEEecCCCEEEEEeccCcccCcEEEEE
Confidence 4322111111111 1122 13466553321 46777653211 112455567666654332 344456999999
Q ss_pred EEEEcCCC--CeeEeeEEEEEEC
Q psy12980 294 LVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 294 LtATDs~G--~sasd~F~V~V~~ 314 (609)
|+|+|.++ ++++.++.|.|..
T Consensus 521 V~~~D~g~P~lsst~tv~V~V~d 543 (559)
T 3q2w_A 521 IIITDSGNPPKSNISILRVKVCQ 543 (559)
T ss_dssp EEEECSSSSCCEEEEEEEEEEC-
T ss_pred EEEEECCCCccceeEEEEEEEEe
Confidence 99999999 8999999999865
No 11
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=97.43 E-value=0.00016 Score=84.76 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=127.9
Q ss_pred HHHHhhccceeeeeeeeecccccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCC--CCCeee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHE--DGGTRK 150 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d--~Gdt~~ 150 (609)
.|.+.-.+.|.+...+.++-|.-......-..+|.++|| +|+...+.-...+.|+ .--..|-.=+=.|.| .|.-..
T Consensus 333 ~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~ 411 (880)
T 1q55_A 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ 411 (880)
T ss_dssp CCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSC
T ss_pred cCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCce
Confidence 366666788999999998654322122234678899997 8988766544555555 211111111225777 444445
Q ss_pred EEEEEecccceecc----cC--ccCcCc--cccc--cccceeeEEEeeeecccc-cccCCCCCCceecccCCCCceecCc
Q psy12980 151 LKLHLMTMDRYVIS----NT--TTGQAK--PVLT--RALGRLMTVKNITWRGIG-HCEDSPPPPVVKVKLENQVPLIRNP 219 (609)
Q Consensus 151 ltlsl~~~d~~~~~----~t--~T~sgt--p~~~--d~~~~~v~v~~~~~~~~~-~~~~~~~~~tv~v~~~N~aPvv~n~ 219 (609)
++|++.. ++...| +. .+|.-+ ..+- ..-...++|...+..+.+ ....++..++|+|..+|++|+....
T Consensus 412 v~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND~P~f~~~ 490 (880)
T 1q55_A 412 AVYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPA 490 (880)
T ss_dssp EECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCCCCEESSC
T ss_pred EEEEEec-CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCCCCEEecC
Confidence 6666655 332223 22 233211 1110 111223444433322111 1112233467778899999998765
Q ss_pred cceeeeeeCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cCCC-Cc----eeE
Q psy12980 220 IDHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQLT-DL----GRR 290 (609)
Q Consensus 220 i~~~~at~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~~-dv----G~~ 290 (609)
.-.+.+.++.. ...+| +-.|+|.|....++|++.. + ...|+..|+.++.++-. ++.- .. +.|
T Consensus 491 ~y~~~V~En~~~Gt~V~~v---~A~D~D~g~n~~v~Ysi~~--~----~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y 561 (880)
T 1q55_A 491 VSRVDVSEDLSRGEKIISL---VAQDPDKQQIQKLSYFIGN--D----PARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 561 (880)
T ss_dssp EECCCBCTTCCSSEEEEEC---CEECCCTTCCCCEEEEECC--C----SSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred ceEEEEeCCCCCCCEEEEE---EEEeCCCCCCCcEEEEECC--C----CCCCEEEeCCccEEEECCccCcccccCCCCEE
Confidence 43344433321 22222 1467776654578888753 1 13799999988877654 2222 22 789
Q ss_pred EEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 291 EYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 291 ~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
++.|+|+|.++ ++.+.++.|+|..
T Consensus 562 ~l~V~A~D~g~p~~sst~tv~I~V~D 587 (880)
T 1q55_A 562 TVIMLVTDDGVSVGTGTGTLILHVLD 587 (880)
T ss_dssp EEEEEEEECSSSCCCCCEEEECCBCC
T ss_pred EEEEEEEECCCCCcEeEEEEEEEEEe
Confidence 99999999864 6777778887754
No 12
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=97.37 E-value=0.0049 Score=65.86 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=116.5
Q ss_pred ceeeeeeeeecccccC----CCCCCCccccccCCC-CCcccCcC--ccceeecCccEEEEcCCCCcccCCCCCeeeEEEE
Q psy12980 82 LMTVKNITWRGIGHCE----DSPPPPVVKVKLENQ-VPLIRNPI--DHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLH 154 (609)
Q Consensus 82 ~~~vk~~~~~~~g~~~----~~~~~~i~~v~~~N~-~P~v~~pi--~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~ltls 154 (609)
.+.+..++.++ |+.. .....-..+|.++|| +|+..... -...+.|++.--..|-.=.=.|.|.|.. ++++
T Consensus 73 ~~~~~V~a~d~-g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~ 149 (419)
T 3ubh_A 73 TIDFWVIITNM-GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYF 149 (419)
T ss_dssp EEEEEEEEEC---CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEE
T ss_pred eEEEEEEEEeC-CCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEE
Confidence 45666666664 3211 000124567889998 88776543 1334555442211111122379999886 6666
Q ss_pred Eecccceecc--cCccCcCccccc-c---ccceeeEEEeeeeccc--ccccCCCCCCceecccCCCCceecCccceeeee
Q psy12980 155 LMTMDRYVIS--NTTTGQAKPVLT-R---ALGRLMTVKNITWRGI--GHCEDSPPPPVVKVKLENQVPLIRNPIDHLEAI 226 (609)
Q Consensus 155 l~~~d~~~~~--~t~T~sgtp~~~-d---~~~~~v~v~~~~~~~~--~~~~~~~~~~tv~v~~~N~aPvv~n~i~~~~at 226 (609)
+..+++...| ++.||.-+-... | .-...++|++.+..+. .....++...+|.|...+.+|+.....-.+.+.
T Consensus 150 i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~dndn~P~F~~~~y~~~v~ 229 (419)
T 3ubh_A 150 IVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 229 (419)
T ss_dssp EEEESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEESCCCCEESSSCEEEEEE
T ss_pred EEeCCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEECCCCCCceecCeeEEEec
Confidence 6655544445 666663221100 1 1112344443333221 000111223556666677889876655444444
Q ss_pred eCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cCCCC-c---eeEEEEEEEE-
Q psy12980 227 SGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQLTD-L---GRREYQLVCK- 297 (609)
Q Consensus 227 ~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~~d-v---G~~~f~LtAT- 297 (609)
++.. ...+|-+ .|++ +. .++|++.. .|. ...|...|+.++.++-. ++.-. . ..|.+.|.|+
T Consensus 230 En~~~gt~v~~v~A---~D~d-n~--~i~Ysi~~-~~~---~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d 299 (419)
T 3ubh_A 230 ENQKKDSDIISIKA---KSFA-DR--EIRYTLKA-QGQ---GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 299 (419)
T ss_dssp TTCCTTCEEEECCE---ECSS-CC--CCEEEEEE-SSS---CCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEEC
T ss_pred CCCCCCcEEEEEEE---ecCC-CC--ceEEEEec-CCC---CCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEe
Confidence 4321 2233322 3553 33 68888863 121 12799999999887754 33222 1 2699999999
Q ss_pred cCCCCeeEeeEEEEEEC
Q psy12980 298 DSNGLMANDGLEVIVKS 314 (609)
Q Consensus 298 Ds~G~sasd~F~V~V~~ 314 (609)
|.++.+++..+.|.|..
T Consensus 300 d~~~~s~~~~v~I~V~D 316 (419)
T 3ubh_A 300 DSGGFSTSVDLTIRVTD 316 (419)
T ss_dssp TTTSCEEEEEEEEEEEC
T ss_pred CCCCcEEEEEEEEEEEc
Confidence 56778888889999875
No 13
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.0012 Score=57.68 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=27.8
Q ss_pred ceeEEEEEEEEcCCCCeeEeeEEEEEECCC
Q psy12980 287 LGRREYQLVCKDSNGLMANDGLEVIVKSPG 316 (609)
Q Consensus 287 vG~~~f~LtATDs~G~sasd~F~V~V~~~p 316 (609)
.|.|.|+|++||..|+++++...|.|.+..
T Consensus 68 ~G~y~f~LTVtD~~G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 68 VGTYVFTLTVKDERNLQSQSSVNVIVKEES 97 (102)
T ss_dssp SSEEEEEEEEEBTTCCEEEEEEEEEEECCS
T ss_pred CeEEEEEEEEEeCCCCEEEeEEEEEEcCCC
Confidence 599999999999999999999999998743
No 14
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=97.26 E-value=0.012 Score=60.31 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=113.8
Q ss_pred cceeeeeeeeecccc-cCCCCCCCccccccCCC-CCcccCcC--ccceeecCccE---EEEcCCCCcccCCCCCeeeEEE
Q psy12980 81 RLMTVKNITWRGIGH-CEDSPPPPVVKVKLENQ-VPLIRNPI--DHLEAISGELL---VYHVPEDTFFDHEDGGTRKLKL 153 (609)
Q Consensus 81 ~~~~vk~~~~~~~g~-~~~~~~~~i~~v~~~N~-~P~v~~pi--~~~~a~e~~~f---s~~iP~~tF~D~d~Gdt~~ltl 153 (609)
..+.|...+.++-.. .......-..+|..+|| +|+..... -...+.|+..- -+++- =.|.|.|.. ++|
T Consensus 69 ~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~---A~D~D~g~n--i~Y 143 (316)
T 3ubf_A 69 IDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ---ARDPDTDHN--IHY 143 (316)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECC---EECSSTTCC--EEE
T ss_pred eEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEE---EECCCCCCc--eEE
Confidence 456676666554311 10111124567788884 78776543 23344444321 23332 378998886 666
Q ss_pred EEecccceecc--cCccCcCc---cc-cccccceeeEEEeeeeccc--ccccCCCCCCceecccCCCCceecCccceeee
Q psy12980 154 HLMTMDRYVIS--NTTTGQAK---PV-LTRALGRLMTVKNITWRGI--GHCEDSPPPPVVKVKLENQVPLIRNPIDHLEA 225 (609)
Q Consensus 154 sl~~~d~~~~~--~t~T~sgt---p~-~~d~~~~~v~v~~~~~~~~--~~~~~~~~~~tv~v~~~N~aPvv~n~i~~~~a 225 (609)
++..+++...| |+.||.-+ +- .-..-...++|.+.+..+. .....++..++|.|...+.+|+.....-.+.+
T Consensus 144 ~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~dnDn~P~F~~~~y~~~v 223 (316)
T 3ubf_A 144 FIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEI 223 (316)
T ss_dssp EEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEESCCCCEESSSSEEEEE
T ss_pred EEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEcCCCCCEEcCCCceEEE
Confidence 66654433344 66666422 10 0011122344443333221 01112223355556566778887665544444
Q ss_pred eeCC---eEEEEcCCCccccCCCCCeeeEEEEEec-cCCCCCCCCccceeccCCceEEee-cCCCC-c---eeEEEEEEE
Q psy12980 226 ISGE---LLVYHVPEDTFFDHEDGGTRKLKLHLMT-MDRTTIPPTHWLQFDAKNQEFYGI-PQLTD-L---GRREYQLVC 296 (609)
Q Consensus 226 t~G~---~f~f~IP~dTF~D~eDGdT~~L~lsl~~-~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~~d-v---G~~~f~LtA 296 (609)
.++. ....+|-+ .|++ +. .++|++.. .+. ..|...|+.++.++-. ++.-. . +.|.+.|+|
T Consensus 224 ~En~~~gt~v~~v~A---~D~D-n~--~i~Y~i~~~~~~-----~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A 292 (316)
T 3ubf_A 224 PENQKKDSDIISIKA---KSFA-DR--EIRYTLKAQGQG-----AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 292 (316)
T ss_dssp ETTCCTTCEEEECCE---ECTT-CC--CEEEEEEEESSC-----TTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEE
T ss_pred eCCCCCCCEEEEEEE---EeCC-CC--EEEEEEEcCCCC-----CCeEEEECCeEEEEECCcCCccccCCCceEEEEEEE
Confidence 4432 12233322 3543 33 68888862 222 3788999988876643 33322 2 679999999
Q ss_pred E-cCCCCeeEeeEEEEEEC
Q psy12980 297 K-DSNGLMANDGLEVIVKS 314 (609)
Q Consensus 297 T-Ds~G~sasd~F~V~V~~ 314 (609)
+ |.++++++..+.|+|..
T Consensus 293 ~dd~g~~~~~~~v~I~V~D 311 (316)
T 3ubf_A 293 TEDSGGFSTSVDLTIRVTD 311 (316)
T ss_dssp EESSSSCEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEe
Confidence 9 78888999999999875
No 15
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=97.18 E-value=0.0009 Score=78.42 Aligned_cols=229 Identities=13% Similarity=0.041 Sum_probs=133.0
Q ss_pred HHHHhhccceeeeeeeeecccc--c-CCCCCCCccccccCCCCCcccCcCccceeecCccEEEEcCCCCcccCCCCCeee
Q psy12980 74 VLTRALGRLMTVKNITWRGIGH--C-EDSPPPPVVKVKLENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRK 150 (609)
Q Consensus 74 ~~~~~~~~~~~vk~~~~~~~g~--~-~~~~~~~i~~v~~~N~~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~ 150 (609)
.|.+.-.+.|.++..+.++-+. . ......-..+|.++|++|+...+.-...+.|+..--..|-.=+=.|.|.|.-..
T Consensus 442 ~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~ 521 (880)
T 1q55_A 442 GLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK 521 (880)
T ss_dssp CCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCC
T ss_pred CCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCCCCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCc
Confidence 3444456778888888886421 0 111223456788999999998876667777776422222222237999877777
Q ss_pred EEEEEecc-cceecccCccCcCc--cccc-cc-----cceeeEEEeeeecccccccCCCCCCceecccCCC-CceecCcc
Q psy12980 151 LKLHLMTM-DRYVISNTTTGQAK--PVLT-RA-----LGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPI 220 (609)
Q Consensus 151 ltlsl~~~-d~~~~~~t~T~sgt--p~~~-d~-----~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~n~i 220 (609)
++|++... .+|..-|+.||.-+ ..+. .. ....++|...+... ....++..++|+|..+|+ +|++...
T Consensus 522 v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~--p~~sst~tv~I~V~DvNDn~P~f~~~- 598 (880)
T 1q55_A 522 LSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV--SVGTGTGTLILHVLDVNDNGPVPSPR- 598 (880)
T ss_dssp EEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSS--SCCCCCEEEECCBCCCCCSCCCBSCC-
T ss_pred EEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEECCC--CCcEeEEEEEEEEEeCCCCCCCccCc-
Confidence 88888753 35666577776421 1111 01 22344444333321 111222346677889998 8887532
Q ss_pred ceeeeeeCCeEEEEcCCCccccCCCCCee-eEEEEEeccCCCCCCCCccc-eeccCCceEEeecC-CCCceeEEEEEEEE
Q psy12980 221 DHLEAISGELLVYHVPEDTFFDHEDGGTR-KLKLHLMTMDRTTIPPTHWL-QFDAKNQEFYGIPQ-LTDLGRREYQLVCK 297 (609)
Q Consensus 221 ~~~~at~G~~f~f~IP~dTF~D~eDGdT~-~L~lsl~~~Dg~~l~~~sWL-~Fd~~t~tf~G~P~-~~dvG~~~f~LtAT 297 (609)
...+.++..--. | =+-.|+|.|..- .++|++...+ . ..|. ..|..+..+.-.+. ....+.|.+.|+|+
T Consensus 599 -~~~v~E~~~~g~-v--v~A~D~D~~~n~~~~~ysl~~~~--~---~~f~i~~~g~~~~l~~~~~d~~~~~~y~l~V~a~ 669 (880)
T 1q55_A 599 -VFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGS--D---LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669 (880)
T ss_dssp -CEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCS--S---SSCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECC
T ss_pred -ceEEecCCCCCe-E--EEEecCCCCCCCceEEEEECCCC--C---CCeEEEcccceeEEEeccCccccCCEEEEEEEEE
Confidence 222222211100 1 135677766521 2666665322 1 1454 44555567766654 45569999999999
Q ss_pred cCCCCeeEeeEEEEEEC
Q psy12980 298 DSNGLMANDGLEVIVKS 314 (609)
Q Consensus 298 Ds~G~sasd~F~V~V~~ 314 (609)
|.++++.+.++.|.|..
T Consensus 670 D~g~lsst~tv~V~V~d 686 (880)
T 1q55_A 670 DAQNNPQLTVVNATVCS 686 (880)
T ss_dssp SSSCCCEEEECCEEECS
T ss_pred ECCcceeeEEEEEEEEe
Confidence 99999999999999865
No 16
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=96.89 E-value=0.0039 Score=60.27 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCCceecccCC-CCceecCccceeeeeeCCe---EEEEcCCCccccCCC---CCeeeEEEEEeccCCCCCCCCccceecc
Q psy12980 201 PPPVVKVKLEN-QVPLIRNPIDHLEAISGEL---LVYHVPEDTFFDHED---GGTRKLKLHLMTMDRTTIPPTHWLQFDA 273 (609)
Q Consensus 201 ~~~tv~v~~~N-~aPvv~n~i~~~~at~G~~---f~f~IP~dTF~D~eD---GdT~~L~lsl~~~Dg~~l~~~sWL~Fd~ 273 (609)
..++|.|...| .+|+.....-.+.+.++.. ...+| .-.|+|. |....++|++...+ .+...|+
T Consensus 90 ~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v---~A~D~D~~~~g~n~~i~Y~i~~~~-------~~F~Id~ 159 (207)
T 3lnd_A 90 SEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQV---TATDADDPTYGNSAKVVYSILQGQ-------PYFSVES 159 (207)
T ss_dssp CCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEEC---CEECSSCTTSSSTTCCEEEEEESG-------GGEEECT
T ss_pred EEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEE---EEEeCCCCCCCCCcEEEEEEcCCC-------CCEEEcC
Confidence 34678888999 5888765443333333211 11111 1457765 55336888886432 4778898
Q ss_pred CCceEEee--cCC-CCceeEEEEEEEEcCC----CCeeEeeEEEEEE
Q psy12980 274 KNQEFYGI--PQL-TDLGRREYQLVCKDSN----GLMANDGLEVIVK 313 (609)
Q Consensus 274 ~t~tf~G~--P~~-~dvG~~~f~LtATDs~----G~sasd~F~V~V~ 313 (609)
.++.++=. ++. .....|.+.|.|+|.+ +++++.++.|+|.
T Consensus 160 ~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~ 206 (207)
T 3lnd_A 160 ETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206 (207)
T ss_dssp TTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEE
T ss_pred CCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEe
Confidence 88877633 333 3458999999999987 5778888888774
No 17
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=96.88 E-value=0.0066 Score=64.82 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=115.7
Q ss_pred HhhccceeeeeeeeecccccC----CCCCCCccccccCCCCCcccCcCccceeecCcc---EEEEcCCCCcccCCCCCee
Q psy12980 77 RALGRLMTVKNITWRGIGHCE----DSPPPPVVKVKLENQVPLIRNPIDHLEAISGEL---LVYHVPEDTFFDHEDGGTR 149 (609)
Q Consensus 77 ~~~~~~~~vk~~~~~~~g~~~----~~~~~~i~~v~~~N~~P~v~~pi~~~~a~e~~~---fs~~iP~~tF~D~d~Gdt~ 149 (609)
..+.++|.+...+.++-|... .....-...|...+.+|+...+.-...+.|+.. .-.+|-| .|.|.|
T Consensus 176 ~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~dndn~P~F~~~~y~~~v~En~~~gt~v~~v~A---~D~dn~--- 249 (419)
T 3ubh_A 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKA---KSFADR--- 249 (419)
T ss_dssp CCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEESCCCCEESSSCEEEEEETTCCTTCEEEECCE---ECSSCC---
T ss_pred cccccEEEEEEEEEECCCCccCcccccceEEEEEEECCCCCCceecCeeEEEecCCCCCCcEEEEEEE---ecCCCC---
Confidence 346678999988888755311 011122345555678898877766666777654 2333333 355433
Q ss_pred eEEEEEe-ccc--ceecccCccCcCc---ccccccc----ceeeEEEeeeecccccccCCCCCCceecccCCC-CceecC
Q psy12980 150 KLKLHLM-TMD--RYVISNTTTGQAK---PVLTRAL----GRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRN 218 (609)
Q Consensus 150 ~ltlsl~-~~d--~~~~~~t~T~sgt---p~~~d~~----~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~n 218 (609)
.++|++. .++ +|-.-++.||.-+ +---... ...++|...+..+ .. .+...++|+|...|+ +|+...
T Consensus 250 ~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~~--~~-s~~~~v~I~V~DvNDn~P~f~~ 326 (419)
T 3ubh_A 250 EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG--GF-STSVDLTIRVTDVNDNAPKFEL 326 (419)
T ss_dssp CCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTTT--SC-EEEEEEEEEEECCCCCCCEESS
T ss_pred ceEEEEecCCCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCCC--Cc-EEEEEEEEEEEccCCCCCcccC
Confidence 3666665 333 3433366666421 1100111 1344444332111 11 112246677889998 998865
Q ss_pred cccee-eeeeCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEE-eecCCCC--ceeEE
Q psy12980 219 PIDHL-EAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFY-GIPQLTD--LGRRE 291 (609)
Q Consensus 219 ~i~~~-~at~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~-G~P~~~d--vG~~~ 291 (609)
+.-.. .+.++.. ...+| +-.|+|.|..-.++|++. + .|...|+ ++.++ --++.-. .+.|+
T Consensus 327 ~~~~~~~v~E~~~~gt~v~~v---~A~D~D~g~n~~v~Y~i~--~-------~~F~Id~-~G~i~~~~~ld~E~~~~~y~ 393 (419)
T 3ubh_A 327 PDYQAHNVDEDIPLGTSILRV---KAMDSDSGSNAEIEYLVS--D-------DHFAVDS-NGIIVNNKQLDADNNNAYYE 393 (419)
T ss_dssp SEEEEEEEETTCCTTCEEEEC---CEECSSCGGGGCEEEEES--C-------TTEEECT-TCEEEECSCSSSSCTTCEEE
T ss_pred CcceeEEecCCCCCCCEEEEE---EEEeCCCCCCCEEEEEEc--C-------CcEEECC-CeEEEECcccCcccCCceEE
Confidence 43322 2333211 22222 246787776445777773 1 4778887 55443 3344322 47899
Q ss_pred EEEEEEcCCCCe--eEeeEEEEEE
Q psy12980 292 YQLVCKDSNGLM--ANDGLEVIVK 313 (609)
Q Consensus 292 f~LtATDs~G~s--asd~F~V~V~ 313 (609)
+.|+|+|.++-. ++-++.|.|.
T Consensus 394 l~V~a~D~G~p~~sst~~v~I~v~ 417 (419)
T 3ubh_A 394 FIVTAKDKGEPPKSGVATVRVYTK 417 (419)
T ss_dssp EEEEEEECCSSCCEEEEEEEEEEE
T ss_pred EEEEEEECCcCCceeEEEEEEEEe
Confidence 999999998754 4444555544
No 18
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=96.85 E-value=0.015 Score=56.03 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=85.9
Q ss_pred ccCCCCCeeeEEEEEecccceecc--cCccCcCcccc-cc---ccceeeEEEeeeecccccccCCCCCCceecccCCC-C
Q psy12980 141 FDHEDGGTRKLKLHLMTMDRYVIS--NTTTGQAKPVL-TR---ALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-V 213 (609)
Q Consensus 141 ~D~d~Gdt~~ltlsl~~~d~~~~~--~t~T~sgtp~~-~d---~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-a 213 (609)
.|.|.|.. +|++..++....| +..||.-+-.. =| .-...++|...+..+- ....++..++|.|...|+ +
T Consensus 26 ~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~-~~~~~~~~v~I~V~DvNDn~ 101 (203)
T 3ppe_A 26 SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNN-RSLEPPSKFIIKVSDINDNA 101 (203)
T ss_dssp BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTT-EECSCCEEEEEEEECCCCCC
T ss_pred ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCCC-CcccceEEEEEEEcCCCCCC
Confidence 68888887 4555544332234 66666422100 01 1112344443332211 111222346677889998 8
Q ss_pred ceecCccceeeeeeCCeEEEEcCCCc----------cccCCC---CCeeeEEEEEeccCCCCCCCCccceeccCCceEEe
Q psy12980 214 PLIRNPIDHLEAISGELLVYHVPEDT----------FFDHED---GGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYG 280 (609)
Q Consensus 214 Pvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eD---GdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G 280 (609)
|+..... +.+.|++++ =.|+|+ |.-..++|++...+ .+...| .++.++=
T Consensus 102 P~F~~~~----------y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~-------~~F~I~-~tG~i~~ 163 (203)
T 3ppe_A 102 PIFVQKI----------FNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN-------EYFTVD-DSGVIFT 163 (203)
T ss_dssp CEESCSE----------EEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEEST-------TTEEEC-TTSEEEE
T ss_pred CCccCCc----------cEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCCC-------CcEEEe-CCeEEEE
Confidence 8876543 445555553 346663 44336888886432 377788 7777663
Q ss_pred --ecCC-CCceeEEEEEEEEcCCC---CeeEeeEEEEEE
Q psy12980 281 --IPQL-TDLGRREYQLVCKDSNG---LMANDGLEVIVK 313 (609)
Q Consensus 281 --~P~~-~dvG~~~f~LtATDs~G---~sasd~F~V~V~ 313 (609)
-++. .....|++.|.|+|.+| ++++..+.|.|.
T Consensus 164 ~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~ 202 (203)
T 3ppe_A 164 ARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLT 202 (203)
T ss_dssp SCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEE
T ss_pred CCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEE
Confidence 3443 34589999999999977 577777777764
No 19
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=96.76 E-value=0.01 Score=57.94 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=66.6
Q ss_pred CceecccCCC-CceecCccceeeeeeCC---eEEEEcCCCccccCCC---CCeeeEEEEEeccCCCCCCCCccceeccCC
Q psy12980 203 PVVKVKLENQ-VPLIRNPIDHLEAISGE---LLVYHVPEDTFFDHED---GGTRKLKLHLMTMDRTTIPPTHWLQFDAKN 275 (609)
Q Consensus 203 ~tv~v~~~N~-aPvv~n~i~~~~at~G~---~f~f~IP~dTF~D~eD---GdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t 275 (609)
++|.|...|+ +|+.....-.+.+.++. ....+| +=.|+|. |....++|++...+ .+...|+.+
T Consensus 93 v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v---~A~D~D~~~~G~n~~i~Y~i~~~~-------~~F~Id~~t 162 (215)
T 2a4e_A 93 FIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQV---TASDADDPTYGNSAKLVYSILEGQ-------PYFSVEAQT 162 (215)
T ss_dssp EEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEEC---CEECSSCTTTCSSSCCEEEEEEST-------TTEEECTTT
T ss_pred EEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEE---EEEECCCCCCCCceEEEEEEeCCC-------CcEEEeCCc
Confidence 6677888997 89876654333333332 111222 1357765 55446888886432 467889888
Q ss_pred ceEEee--cC-CCCceeEEEEEEEEcCCC----CeeEeeEEEEEEC
Q psy12980 276 QEFYGI--PQ-LTDLGRREYQLVCKDSNG----LMANDGLEVIVKS 314 (609)
Q Consensus 276 ~tf~G~--P~-~~dvG~~~f~LtATDs~G----~sasd~F~V~V~~ 314 (609)
+.++=. ++ ....+.|.+.|.|+|.++ ++++..+.|.|..
T Consensus 163 G~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~D 208 (215)
T 2a4e_A 163 GIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208 (215)
T ss_dssp CEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC
T ss_pred cEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEE
Confidence 877643 33 334589999999999874 6888888888865
No 20
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=96.56 E-value=0.026 Score=54.52 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCceecccCCC-CceecCccceeeeeeCCeEEEEcCCCc----------cccCCCC---CeeeEEEEEeccCCCCCCCC
Q psy12980 201 PPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDT----------FFDHEDG---GTRKLKLHLMTMDRTTIPPT 266 (609)
Q Consensus 201 ~~~tv~v~~~N~-aPvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eDG---dT~~L~lsl~~~Dg~~l~~~ 266 (609)
..++|.|...|+ +|+..... +.+.|++++ =.|+|.| .-..++|++...+.. .+..
T Consensus 92 ~~v~I~V~DvNDn~P~F~~~~----------y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~-~~~~ 160 (213)
T 3qrb_A 92 MEIVITVTDQNDNRPEFTQEV----------FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPE-LPHK 160 (213)
T ss_dssp EEEEEEEECCSCCCCEESCSE----------EEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESC-CSCS
T ss_pred EEEEEEEEEccCCCCccCCCc----------eEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCC-CCcC
Confidence 346677888988 88875543 445555553 4688777 223688888754422 1234
Q ss_pred ccceeccCCceEEee--cCC-CCceeEEEEEEEEcCC--CCeeEeeEEEEEE
Q psy12980 267 HWLQFDAKNQEFYGI--PQL-TDLGRREYQLVCKDSN--GLMANDGLEVIVK 313 (609)
Q Consensus 267 sWL~Fd~~t~tf~G~--P~~-~dvG~~~f~LtATDs~--G~sasd~F~V~V~ 313 (609)
.+...|+.++.++=. ++. .....|.+.|.|+|.+ +++++..+.|+|.
T Consensus 161 ~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~ 212 (213)
T 3qrb_A 161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212 (213)
T ss_dssp CSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEE
T ss_pred CeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEE
Confidence 688899998887643 443 3357999999999965 5666666777664
No 21
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=96.49 E-value=0.011 Score=57.43 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred CceecccCCC-CceecCccceeeeeeCC---eEEEEcCCCccccCCC--CCeeeEEEEEeccCCCCCCCCccceeccCCc
Q psy12980 203 PVVKVKLENQ-VPLIRNPIDHLEAISGE---LLVYHVPEDTFFDHED--GGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQ 276 (609)
Q Consensus 203 ~tv~v~~~N~-aPvv~n~i~~~~at~G~---~f~f~IP~dTF~D~eD--GdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~ 276 (609)
++|+|...|+ +|+.....-...+.++. ....+| +-.|+|. |.-..++|++...+... +...+...|+.++
T Consensus 94 v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v---~A~D~D~~~g~n~~i~Y~i~~~~~~~-~~~~~F~Id~~tG 169 (218)
T 3k5r_A 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM---TAFDADDPATDNALLRYNIRQQTPDK-PSPNMFYIDPEKG 169 (218)
T ss_dssp EEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEEC---CCSCSSSSCGGGGCEEEEEEEEESCC-SCSCSEEECTTTC
T ss_pred EEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEE---EEEeCCCCCCCCcEEEEEEecCCCCC-CcCCEEEEECCcc
Confidence 6677888885 88876544333333321 111222 1357766 33347888887543221 2236888999999
Q ss_pred eEEee----cCC-CC--ceeEEEEEEEEcCC----CCeeEeeEEEEEE
Q psy12980 277 EFYGI----PQL-TD--LGRREYQLVCKDSN----GLMANDGLEVIVK 313 (609)
Q Consensus 277 tf~G~----P~~-~d--vG~~~f~LtATDs~----G~sasd~F~V~V~ 313 (609)
.++=. ++. .. ...|++.|+|+|.+ +++++.++.|.|.
T Consensus 170 ~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~ 217 (218)
T 3k5r_A 170 DIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVID 217 (218)
T ss_dssp EEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEE
T ss_pred EEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEE
Confidence 88743 443 23 35899999999998 6888888888875
No 22
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=96.46 E-value=0.015 Score=60.14 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=66.5
Q ss_pred CceecccCCC-CceecCccceeeeeeCCeEEEEcCCCc----------cccCCC---CCeeeEEEEEeccCCCCCCCCcc
Q psy12980 203 PVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDT----------FFDHED---GGTRKLKLHLMTMDRTTIPPTHW 268 (609)
Q Consensus 203 ~tv~v~~~N~-aPvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eD---GdT~~L~lsl~~~Dg~~l~~~sW 268 (609)
++|.|...|+ +|+.... .+.+.||+++ =.|+|+ |....++|++...+ .|
T Consensus 92 v~I~V~DvNDn~P~F~~~----------~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~-------~~ 154 (322)
T 2a62_A 92 FIIKVQDINDNAPEFLNG----------PYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ-------PY 154 (322)
T ss_dssp ECEECCCCSCSCBCCSSS----------EEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEECT-------TT
T ss_pred EEEEEEecCCCCCccCCC----------ceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccCC-------CC
Confidence 5677888997 8986543 4556666664 456664 55446888886432 47
Q ss_pred ceeccCCceEEee--cCC-CCceeEEEEEEEEcCCC----CeeEeeEEEEEEC
Q psy12980 269 LQFDAKNQEFYGI--PQL-TDLGRREYQLVCKDSNG----LMANDGLEVIVKS 314 (609)
Q Consensus 269 L~Fd~~t~tf~G~--P~~-~dvG~~~f~LtATDs~G----~sasd~F~V~V~~ 314 (609)
...|+.++.++-. ++. .....|.+.|.|+|.+| ++.+..+.|.|..
T Consensus 155 F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~D 207 (322)
T 2a62_A 155 FSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTD 207 (322)
T ss_dssp EEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECC
T ss_pred EEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEe
Confidence 7889888877643 332 23478999999999875 6778888888865
No 23
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.91 E-value=0.0093 Score=52.47 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=62.5
Q ss_pred cccCCC-CceecCccceeeeeeCCeEEEEcCCCc----------cccCCCCCeeeEEEEEeccCCCCCCCCccceeccCC
Q psy12980 207 VKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDT----------FFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKN 275 (609)
Q Consensus 207 v~~~N~-aPvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t 275 (609)
|...|+ +|+.... .+.+.||+++ =.|+|.|....++|++...... ....|...|+.+
T Consensus 4 V~DvNDn~P~F~~~----------~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~--~~~~~F~Id~~t 71 (114)
T 2ee0_A 4 GSSGNDNRPVFKEG----------QVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAP--ATKRLFALNNTT 71 (114)
T ss_dssp CCCCCCCCCCCSCS----------EEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCH--HHHHHEEECTTT
T ss_pred EeeCCCCCCCcCCC----------cEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCC--CccceEEEeCCe
Confidence 456775 8876554 3344444443 3577777545788888532111 123789999988
Q ss_pred ceEEee-cC-CCCceeEEEEEEEEcCCCCeeEeeEEEEEE
Q psy12980 276 QEFYGI-PQ-LTDLGRREYQLVCKDSNGLMANDGLEVIVK 313 (609)
Q Consensus 276 ~tf~G~-P~-~~dvG~~~f~LtATDs~G~sasd~F~V~V~ 313 (609)
+.++=. ++ ......|.+.|.|+|.++.+++..+.|.|.
T Consensus 72 G~I~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~~v~I~V~ 111 (114)
T 2ee0_A 72 GLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVT 111 (114)
T ss_dssp CEEEECSCCCTTTCSEEEEEEEEESSSSSCEEEEEEEEEE
T ss_pred eEEEECccCCcccCcEEEEEEEEEECCCCceEEEEEEEEE
Confidence 876532 33 333589999999999998887777777775
No 24
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=95.87 E-value=0.03 Score=54.52 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=64.1
Q ss_pred CceecccCCC-CceecCccceeeeeeCCeEEEEcCCCc----------cccCCC--CCeeeEEEEEeccCCCCCCCCccc
Q psy12980 203 PVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDT----------FFDHED--GGTRKLKLHLMTMDRTTIPPTHWL 269 (609)
Q Consensus 203 ~tv~v~~~N~-aPvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eD--GdT~~L~lsl~~~Dg~~l~~~sWL 269 (609)
++|.|...|+ +|+.... .+.+.|++++ =.|+|. |.-..++|++...+.. .+...+.
T Consensus 94 v~I~V~DvNDn~P~F~~~----------~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~-~~~~~~F 162 (215)
T 2qvi_A 94 IVINVIDMNDNRPEFLHQ----------VWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS-TPSPNMF 162 (215)
T ss_dssp EEEEEECCCCCCCBCSSS----------EEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSC-CSSTTCE
T ss_pred EEEEEeECCCCCCcccCc----------eeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCC-CCcCCeE
Confidence 5567788987 8887654 3445555553 346665 3323577877644311 1133678
Q ss_pred eeccCCceEEee--cCC-CCceeEEEEEEEEcCCC-----CeeEeeEEEEEE
Q psy12980 270 QFDAKNQEFYGI--PQL-TDLGRREYQLVCKDSNG-----LMANDGLEVIVK 313 (609)
Q Consensus 270 ~Fd~~t~tf~G~--P~~-~dvG~~~f~LtATDs~G-----~sasd~F~V~V~ 313 (609)
..|+.++.++=. ++. .....|++.|.|+|.+| ++++.++.|+|.
T Consensus 163 ~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~ 214 (215)
T 2qvi_A 163 TINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214 (215)
T ss_dssp EECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEEC
T ss_pred EEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEE
Confidence 889988877642 443 33589999999999875 466666666663
No 25
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=95.67 E-value=0.047 Score=55.94 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=64.3
Q ss_pred CCceecccCC-CCceecCccceeeeeeCCeEEEEcCCCc----------cccCCCCCeeeEEEEEeccCCCCCCCCccce
Q psy12980 202 PPVVKVKLEN-QVPLIRNPIDHLEAISGELLVYHVPEDT----------FFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQ 270 (609)
Q Consensus 202 ~~tv~v~~~N-~aPvv~n~i~~~~at~G~~f~f~IP~dT----------F~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~ 270 (609)
.++|+|...| .+|+...... .+.+.|++++ =.|+|.|. +++|++...++ ..|..
T Consensus 91 ~v~I~V~DvNDn~P~F~~~~~--------~y~~~v~En~~~gt~v~~v~A~D~D~g~--ni~Y~i~~~~~-----~~~F~ 155 (316)
T 3ubf_A 91 RVIILVKDVNDEPPYFINRPL--------PMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRT-----GGRFE 155 (316)
T ss_dssp EEEEEEECTTCCCCEECCSSS--------SEEEEECTTCCTTCEEEECCEECSSTTC--CEEEEEEEEES-----SSCEE
T ss_pred EEEEEEEECCCCCCccCCCCC--------CEEEEEeCCCCCCCEEEEEEEECCCCCC--ceEEEEEeCCC-----CCEEE
Confidence 3667788888 5888765321 1333444443 46888888 78888864432 26888
Q ss_pred eccCCceEEee-cC-CCCceeEEEEEEEEcCCC------CeeEeeEEEEEE
Q psy12980 271 FDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG------LMANDGLEVIVK 313 (609)
Q Consensus 271 Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G------~sasd~F~V~V~ 313 (609)
.|+.++.++=. ++ ......|.+.|+|+|.+| .+.+..+.|.|.
T Consensus 156 Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~ 206 (316)
T 3ubf_A 156 VDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 206 (316)
T ss_dssp ECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEE
T ss_pred EECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEE
Confidence 99988876643 22 233478999999999986 355666777775
No 26
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=95.56 E-value=0.048 Score=54.20 Aligned_cols=108 Identities=10% Similarity=-0.065 Sum_probs=67.4
Q ss_pred CCCceecccCCC-Cce----------ecCccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccc
Q psy12980 201 PPPVVKVKLENQ-VPL----------IRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWL 269 (609)
Q Consensus 201 ~~~tv~v~~~N~-aPv----------v~n~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL 269 (609)
..++|.|...|+ +|+ .....-.+.+.++..--..|-.=.=.|+|.|.--.++|++...+ ..|.
T Consensus 113 ~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~------~~~F 186 (246)
T 2x2u_A 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE------GLPF 186 (246)
T ss_dssp TEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT------TSSE
T ss_pred EEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC------CCCE
Confidence 346667778888 888 55544444444443221111111245776665446888886442 3788
Q ss_pred eeccCCceEEee-cC-CCCceeEEEEEEEEcCCC---CeeEeeEEEEEEC
Q psy12980 270 QFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG---LMANDGLEVIVKS 314 (609)
Q Consensus 270 ~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G---~sasd~F~V~V~~ 314 (609)
..|+.++.++=. ++ ......|++.|.|+|..| ++++-.+.|.|..
T Consensus 187 ~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~I~V~D 236 (246)
T 2x2u_A 187 RSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYD 236 (246)
T ss_dssp ECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEEEEEEC
T ss_pred EEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEEEEEEE
Confidence 899988876543 33 334589999999999655 5777788888865
No 27
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.55 E-value=0.073 Score=47.64 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred ccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccC-CCCCCCCccceecc---CCceEEeec-----CCCC-ce
Q psy12980 219 PIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMD-RTTIPPTHWLQFDA---KNQEFYGIP-----QLTD-LG 288 (609)
Q Consensus 219 ~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~D-g~~l~~~sWL~Fd~---~t~tf~G~P-----~~~d-vG 288 (609)
.+..+.+.+|.....+||.|.- .|+......+ ....-.+.|-..-. .+.++.|-- +++. .|
T Consensus 10 ~~k~l~Vsag~~~~i~LP~n~v---------~L~a~v~pd~~~~~~ysyeWtli~gP~d~~~~~~~~~~~tlkLS~L~eG 80 (113)
T 2e7m_A 10 TVKELTVSAGDNLIITLPDNEV---------ELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVG 80 (113)
T ss_dssp CCEECEEECCSCEEEETTCCCE---------EEECEEESCCCSSCCCCCBCCEEECCTTCCCCCCTTSSSEEEECSCCSE
T ss_pred cccccEEEcCCCeEEECCCCcE---------EEEEEECCCCCCCCEEeeEEEEecCCCCCceEEecCCCCeeEecCcCcE
Confidence 4678899999999999998852 1222222111 11123455655532 122222211 1221 39
Q ss_pred eEEEEEEEEcCCCCeeEeeEEEEEECCCCCC
Q psy12980 289 RREYQLVCKDSNGLMANDGLEVIVKSPGPAY 319 (609)
Q Consensus 289 ~~~f~LtATDs~G~sasd~F~V~V~~~p~~~ 319 (609)
.|.|+|++||.+| ..++...|+|.+.++.+
T Consensus 81 ~Y~FqltVtd~~~-~ge~~vnVTV~P~~ri~ 110 (113)
T 2e7m_A 81 LYVFKVTVSSENA-FGEGFVNVTVKPARSGP 110 (113)
T ss_dssp EEEECCEEEETTE-EEECCEEEEEECCCCSC
T ss_pred EEEEEEEEECCCC-CccceEEEEEcCccccC
Confidence 9999999999999 89999999999976543
No 28
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=95.40 E-value=0.082 Score=57.35 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred cCCCCceec-Cccc-----eeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCC-----CCCCCccceeccCCce
Q psy12980 209 LENQVPLIR-NPID-----HLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRT-----TIPPTHWLQFDAKNQE 277 (609)
Q Consensus 209 ~~N~aPvv~-n~i~-----~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~-----~l~~~sWL~Fd~~t~t 277 (609)
..|.+|++. +.-. ++.+.+|..+.+.- ..=+|+ ||+ .|+|.=....|. .+... .-+..+-+
T Consensus 329 ~aNhaPVa~iag~~g~~p~~~~v~aG~tVtLdA--s~SsDP-DGD--~LtY~W~q~~g~g~~~~~vtls---~~~~~~~s 400 (437)
T 2yhg_A 329 AANHHPVPVVNNDANEAVMYLNASAGSTVSLDA--SGSSDP-DGD--SLNYSWSHYGEADSYSGSVSIS---NSSSASAN 400 (437)
T ss_dssp GSCCCCBCCBTTBCCSSCEEEEECTTCEEEEEC--TTCBCT-TCC--CEEEEEEECTTTSSCCSCCCEE---TTTSSEEE
T ss_pred cCCCCCEEEecCCCcccccceEecCCCEEEEEe--eeeeCC-CCC--eEEEEEEEeCCCCccccceEee---cCCCceEE
Confidence 579999987 3322 78999999888873 445688 588 666665544333 22211 01222223
Q ss_pred EEeecCCCCceeEEEEEEEEcCC--CCeeEeeEEEEEE
Q psy12980 278 FYGIPQLTDLGRREYQLVCKDSN--GLMANDGLEVIVK 313 (609)
Q Consensus 278 f~G~P~~~dvG~~~f~LtATDs~--G~sasd~F~V~V~ 313 (609)
|. .|....-+.++|+|++||.+ |+++.+.+.|+|+
T Consensus 401 ft-~P~~~~~~tl~f~LtVTD~~~p~lTs~~rViVtV~ 437 (437)
T 2yhg_A 401 VQ-IPSNAGGKDIHILLTLRDNGSPNLYAYRRVVINVQ 437 (437)
T ss_dssp EE-CCTTCTTCEEEEEEEEEECSSSCCEEEEEEEEEEC
T ss_pred EE-eCCCCCCcEEEEEEEEEeCCCCCccEEeEEEEEeC
Confidence 33 36554458999999999999 9999999999984
No 29
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=95.31 E-value=0.34 Score=46.48 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=30.9
Q ss_pred eEEeecCCCCceeEEEEEEEEcCCCCe-eEeeEEEEEECCCCCCc
Q psy12980 277 EFYGIPQLTDLGRREYQLVCKDSNGLM-ANDGLEVIVKSPGPAYY 320 (609)
Q Consensus 277 tf~G~P~~~dvG~~~f~LtATDs~G~s-asd~F~V~V~~~p~~~~ 320 (609)
+|...+ ..|.|.|.++|+|..|.. .+..+.|.|.+++...|
T Consensus 145 ~~~~~~---~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~~~~~~~ 186 (190)
T 3pdd_A 145 EYEWKA---VEGNHEISVIAYDDDDAASTPDSVKIFVKQARLEHH 186 (190)
T ss_dssp EEEEEC---CSEEEEEEEEEEETTCCBCCCEEEEEEEBCGGGCCC
T ss_pred EEEEec---CCeeEEEEEEEEECCCCEEecceEEEEECCcccccc
Confidence 445555 459999999999999986 55688999988654433
No 30
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=95.01 E-value=0.24 Score=49.26 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=63.0
Q ss_pred CceecccCCC-CceecCccceeeeeeCC---eEEEEcCC--CccccCCCCCeeeEEEEEeccCCCCCCCCccceeccC-C
Q psy12980 203 PVVKVKLENQ-VPLIRNPIDHLEAISGE---LLVYHVPE--DTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAK-N 275 (609)
Q Consensus 203 ~tv~v~~~N~-aPvv~n~i~~~~at~G~---~f~f~IP~--dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~-t 275 (609)
.+|.|...|+ +|+.....-...+.++. ...+++-. -+=.|+|.|.--.++|++...+... ........|.. +
T Consensus 113 V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~-~~~~~F~Id~~~t 191 (242)
T 4apx_B 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDP-TSNDTFEIPLMLT 191 (242)
T ss_dssp EEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTST-THHHHEECSSTTT
T ss_pred EEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCc-ccccceEEcCCCc
Confidence 4566778885 88876543333333321 11121111 1124777775335888886443221 11234566643 5
Q ss_pred ceEEee-cC-CCCceeEEEEEEEEcCCC-----CeeEeeEEEEEECC
Q psy12980 276 QEFYGI-PQ-LTDLGRREYQLVCKDSNG-----LMANDGLEVIVKSP 315 (609)
Q Consensus 276 ~tf~G~-P~-~~dvG~~~f~LtATDs~G-----~sasd~F~V~V~~~ 315 (609)
+.++=. ++ ......|.+.|+|+|.++ ++....++|.|..+
T Consensus 192 G~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~~ 238 (242)
T 4apx_B 192 GNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEHH 238 (242)
T ss_dssp CCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEECC
T ss_pred eEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEeec
Confidence 544432 33 334578999999999877 45677888888764
No 31
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.48 E-value=0.046 Score=48.09 Aligned_cols=102 Identities=8% Similarity=0.114 Sum_probs=61.9
Q ss_pred cccCCC-CceecCccceeeeeeCCe---EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-
Q psy12980 207 VKLENQ-VPLIRNPIDHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI- 281 (609)
Q Consensus 207 v~~~N~-aPvv~n~i~~~~at~G~~---f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~- 281 (609)
|...|+ +|+.....-.+.+.++.. ..++|- -.|+|.|.-..++|++...++ ....|...|+.++.++=.
T Consensus 4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~---A~D~D~g~n~~i~Y~i~~~~~---~~~~~F~Id~~tG~I~~~~ 77 (119)
T 2yst_A 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLR---AADLDVGVNGQIEYVFGAATE---SVRRLLRLDETSGWLSVLH 77 (119)
T ss_dssp CCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECC---CCCSSSSCCSCCCCEECSCCT---THHHHEEECTTTCEEEECS
T ss_pred EecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEE---EEeCCCCCCCeEEEEEecCCC---ccccEEEEeCCceEEEECc
Confidence 456776 888765443333333321 122221 357776654467887764321 113689999988876533
Q ss_pred cC-CCCceeEEEEEEEEcCCCC--eeEeeEEEEEEC
Q psy12980 282 PQ-LTDLGRREYQLVCKDSNGL--MANDGLEVIVKS 314 (609)
Q Consensus 282 P~-~~dvG~~~f~LtATDs~G~--sasd~F~V~V~~ 314 (609)
++ ......|.+.|.|+|.++- +++..+.|.|..
T Consensus 78 ~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~D 113 (119)
T 2yst_A 78 RIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKD 113 (119)
T ss_dssp CCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEEC
T ss_pred cCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEe
Confidence 33 2335799999999998874 566677777764
No 32
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=94.11 E-value=0.66 Score=38.55 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=46.0
Q ss_pred eeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeecCCCCceeEEEEEEEEcCCCCe
Q psy12980 224 EAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLM 303 (609)
Q Consensus 224 ~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P~~~dvG~~~f~LtATDs~G~s 303 (609)
.+..|....|. .+.=.|+ ||+ .+++.-...||... ...+- .......|.|.+.|+++|..|.+
T Consensus 12 ~~~~~~~v~f~--~~~s~d~-~g~--~~~y~W~fgdG~~s--------~~~~~----~hty~~~G~Y~v~LtVtd~~G~~ 74 (85)
T 2y72_A 12 TGAVGRNIEFS--GKDSKDE-DGK--IVSYDWDFGDGATS--------RGKNS----VHAYKKAGTYNVTLKVTDDKGAT 74 (85)
T ss_dssp EEETTCEEEEE--CTTCBCT-TSC--EEEEEEECSSSCEE--------ESSEE----EEECSSCEEEEEEEEEEETTSCE
T ss_pred ccCCCcEEEEE--EecccCC-CCC--EEEEEEEECCCCcc--------cccce----EEEcCCCeEEEEEEEEEECCCCE
Confidence 55666666665 1222232 566 55555555565421 00111 12233459999999999999999
Q ss_pred eEeeEEEEEEC
Q psy12980 304 ANDGLEVIVKS 314 (609)
Q Consensus 304 asd~F~V~V~~ 314 (609)
.+++..|.|.+
T Consensus 75 ~t~~~~V~V~n 85 (85)
T 2y72_A 75 ATESFTIEIKN 85 (85)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEcC
Confidence 99999999974
No 33
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=93.78 E-value=2.8 Score=43.92 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=85.1
Q ss_pred cCCCCceecCccceeeeeeCCeEEEEcCCCccccCCCCC--eeeEEEEEeccCCCCCCCCccceeccC------CceEEe
Q psy12980 209 LENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGG--TRKLKLHLMTMDRTTIPPTHWLQFDAK------NQEFYG 280 (609)
Q Consensus 209 ~~N~aPvv~n~i~~~~at~G~~f~f~IP~dTF~D~eDGd--T~~L~lsl~~~Dg~~l~~~sWL~Fd~~------t~tf~G 280 (609)
.-+.+|++.++ ..+.+..|..|+|.++ ++|. .|. ...+.++-...+... -...|+.+... +-+++|
T Consensus 154 ~Dt~pPtI~~P-~eI~vYRGEevnft~~---VTDN-Sgk~~In~t~V~~l~g~~~g-~~t~~i~~st~t~~np~tl~ITG 227 (360)
T 3qc5_X 154 KDTERPVVNVP-SEITVYRGESFEYFAT---VTDN-SNAFDLAKTVVRWLYSNQPG-RGTEWLQYSVTQVGNQLKVRIFG 227 (360)
T ss_dssp CCCCCCEEECC-SEEEEETTCEEEEEEE---EECT-TSCEEEEEEEEECSSSSSSC-TTCTTCEEEEEEETTEEEEEEEE
T ss_pred CCCCCCcccCC-ccEEEEcCCeEEEEEE---EecC-CCCceeeeeEEEeeccCCCc-CCcccccccccCCCCceEEEEEE
Confidence 46789999988 6777999999999998 5553 343 222344322122111 23579885443 337899
Q ss_pred e-cCCCCceeEEEEEEEEcCCCCeeE----------------eeEEEEEECCCCCCcceEEEEEecCCCCCcCchHHHHH
Q psy12980 281 I-PQLTDLGRREYQLVCKDSNGLMAN----------------DGLEVIVKSPGPAYYSASFSLTLARPSSTFAQPAAQRA 343 (609)
Q Consensus 281 ~-P~~~dvG~~~f~LtATDs~G~sas----------------d~F~V~V~~~p~~~~~vef~L~l~~~~~~ft~~~~q~~ 343 (609)
. |.+...|.|.+.|+|||..|.... .-|.+.++-.|..... ++.+ .+...|++ ..+.+
T Consensus 228 tVp~n~~~n~iTRyV~ATD~sGNtt~T~tk~g~~~v~~~s~~G~fklviKy~P~vP~~---KV~V-~DPnnLTd-~EKek 302 (360)
T 3qc5_X 228 NVPIDTTIGDYTRYVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFRIKTPEN---TVFV-NNPNQLTE-VEKNL 302 (360)
T ss_dssp ECCSSSCCEEEEEEEEEEETTSCBSSCHHHHHHHHHHTCCCTTEEEEEEECCCCCCSS---CEEE-SCTTSCCH-HHHHH
T ss_pred EecCcCccceEEEEEEEEcCCCCcccccccceeeeeccccccccEEEEEecCCCCCCc---ceEe-cCcccCCH-HHHHH
Confidence 7 777778999999999999999742 1355666543332221 1122 24467886 35666
Q ss_pred HHHHHHHHhCC
Q psy12980 344 FLEKLAGLFGD 354 (609)
Q Consensus 344 LVekLA~llGD 354 (609)
+.+++-.+=.+
T Consensus 303 VkeaVKkANpd 313 (360)
T 3qc5_X 303 VREAVKKSNPD 313 (360)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 66666665444
No 34
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=91.28 E-value=0.6 Score=40.99 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCceecCccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeecCCCCcee
Q psy12980 210 ENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIPQLTDLGR 289 (609)
Q Consensus 210 ~N~aPvv~n~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P~~~dvG~ 289 (609)
.+.+|++.-. .++.+..|..|...- .=+-.|.+||+ |. +-+ .+.|.-...-.|.
T Consensus 7 ~~~~P~It~~-~d~tI~~Gd~fd~~~-gvtA~D~~DGD---------------lT--~~I-------~V~g~Vdt~k~G~ 60 (103)
T 2kpn_A 7 SDLEPKLTVP-VGATIHVGDSFVPMA-EVLAIDKEDGD---------------LT--SKI-------KVDGEVDTTKAGT 60 (103)
T ss_dssp CCCCCEEECC-SEEEEETTCCCCHHH-HCEEECSSSCB---------------CG--GGC-------EEESCCCSSSCEE
T ss_pred CCCCCEEEeC-CCEEEECCCCccccc-CcEEEcCCCCC---------------cc--eeE-------EEeCcccCCCceE
Confidence 4678887653 457777777664210 01455666665 11 112 3346655566799
Q ss_pred EEEEEEEEcCCCCeeEeeEEEEEECC
Q psy12980 290 REYQLVCKDSNGLMANDGLEVIVKSP 315 (609)
Q Consensus 290 ~~f~LtATDs~G~sasd~F~V~V~~~ 315 (609)
|.+..+++|+.|..++.+.+|.|...
T Consensus 61 Y~VtY~VtDs~Gn~~t~trtVtV~~~ 86 (103)
T 2kpn_A 61 YVLTYTVTDSKGHEVTAKQTVTVKVR 86 (103)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECS
T ss_pred EEEEEEEEcCCCCEEEEEEEEEEeCC
Confidence 99999999999999999999999763
No 35
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=90.74 E-value=1.7 Score=37.03 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=45.2
Q ss_pred ccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCC---CeeEeeEEEEE
Q psy12980 241 FDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG---LMANDGLEVIV 312 (609)
Q Consensus 241 ~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G---~sasd~F~V~V 312 (609)
.|+|.| .-.++|++... +. ..+...|+.++.++=. ++ ......|++.+.|+|.++ ++.+-.+.|.|
T Consensus 26 ~D~D~g-N~~v~Ysi~~~-~~----~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~~l~~~~~v~I~V 96 (98)
T 1zxk_A 26 TDLDPG-SKKIKYILSGD-GA----GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKV 96 (98)
T ss_dssp BCCCCC---CEEEEEEET-TB----TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEE
T ss_pred ECCCCC-CCEEEEEEeCC-CC----CCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCCCCCcceeEEEEEEE
Confidence 688887 45788988632 21 2578899988876654 33 333579999999999876 45666666665
No 36
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=90.20 E-value=1.3 Score=44.79 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=53.9
Q ss_pred cCCCCceecCccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeecCCCCce
Q psy12980 209 LENQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIPQLTDLG 288 (609)
Q Consensus 209 ~~N~aPvv~n~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P~~~dvG 288 (609)
..|.+|+..-.........|....|.- ..=+|+ ||+ .+++.-...||.... .-++ . -.......|
T Consensus 5 ~~N~~PvA~ft~~~~~g~~~~tV~F~~--s~StD~-dG~--i~sy~WdFGDG~tst-----~~nP---~--~thtY~~~G 69 (260)
T 2c4x_A 5 PENQAPKAIFTFSPEDPVTDENVVFNA--SNSIDE-DGT--IAYYVWDFGDGYEGT-----STTP---T--ITYKYKNPG 69 (260)
T ss_dssp CCCCCCBCCCEEESSSCBTTCCEEEEC--TTCBCS-SSC--EEEEEEECSSSCEEE-----ESSS---E--EEECCSSCE
T ss_pred CCCCCCEEEEEecccccCCCcEEEEEe--ccccCC-CCC--EEEEEEEeCCCCccc-----ccCc---e--eEEEeCCCE
Confidence 468888754333333344455554442 111232 455 455555545554210 0010 1 122334559
Q ss_pred eEEEEEEEEcCCCCeeEeeEEEEEECCC
Q psy12980 289 RREYQLVCKDSNGLMANDGLEVIVKSPG 316 (609)
Q Consensus 289 ~~~f~LtATDs~G~sasd~F~V~V~~~p 316 (609)
.|.+.|+++|..|.+.+.+..|.|.+.+
T Consensus 70 tYtVtLTVtD~~G~s~t~t~~ItV~~~~ 97 (260)
T 2c4x_A 70 TYKVKLIVTDNQGASSSFTATIKVTSAT 97 (260)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEBCSS
T ss_pred EEEEEEEEEeCCCCeEEEEEEEEECCCC
Confidence 9999999999999999999999998754
No 37
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=87.86 E-value=3.6 Score=35.12 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred ccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCC-CC--eeEeeEEEEE
Q psy12980 241 FDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSN-GL--MANDGLEVIV 312 (609)
Q Consensus 241 ~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~-G~--sasd~F~V~V 312 (609)
.|+|.| --.++|++... +. ......|+.++.++=. ++. .....|++.+.|+|.+ |. +..-.+.|.|
T Consensus 27 ~D~D~g-Ng~v~Ysi~~~-~~----~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~p~l~~~~~v~I~V 97 (99)
T 1zvn_A 27 SDMDRG-DGSIKYILSGE-GA----GIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKI 97 (99)
T ss_dssp BTTCCS-SSCEEEEEEET-TB----TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCBSSCCEEEEEEE
T ss_pred ECCCCC-CCEEEEEEeCC-CC----CceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCCCCcceeEEEEEEE
Confidence 788877 34788888642 21 1577889988877754 333 3357899999999987 44 4444555555
No 38
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=87.13 E-value=0.41 Score=46.05 Aligned_cols=138 Identities=11% Similarity=-0.004 Sum_probs=78.8
Q ss_pred HHHHHhhccceeeeeeeeecccccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCCCCeeeE
Q psy12980 73 PVLTRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKL 151 (609)
Q Consensus 73 ~~~~~~~~~~~~vk~~~~~~~g~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~l 151 (609)
..|.+...+.|.++..+.++-|... ..-..+|..+|| +|+...+.-...+.|++.--..|-.=.=.|.|.|.-..+
T Consensus 68 ~~LD~E~~~~y~l~v~a~D~~~~~~---~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v 144 (210)
T 3mvs_A 68 QPLDRETKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSV 144 (210)
T ss_dssp SCCCTTTCCEEEEEEEEECSSCEEE---EEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCE
T ss_pred CccCCcccceEEEEEEEEeCCCCEE---EEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceE
Confidence 3466667888999988888755432 234567889998 998877766666666653221111122378998877778
Q ss_pred EEEEecccceecccCccCcCc--ccc--ccccceeeEEEeeeecccccccCCCCCCceecccCCCCc
Q psy12980 152 KLHLMTMDRYVISNTTTGQAK--PVL--TRALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQVP 214 (609)
Q Consensus 152 tlsl~~~d~~~~~~t~T~sgt--p~~--~d~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~aP 214 (609)
+|++..++++-.-++.||.-+ -.+ -..-...++|...+..+.. .-+++..++|+|..+|+.|
T Consensus 145 ~Y~i~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~-~~s~~~~v~I~V~DvND~~ 210 (210)
T 3mvs_A 145 LYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTR-PLSTLANLAIIITDMQDMD 210 (210)
T ss_dssp EEEESSCCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSS-CCEEEEEEEEEEECCCCCC
T ss_pred EEEEeCCCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCC-CCEEEEEEEEEEEccCCCC
Confidence 888876665544466666421 111 0111223444433332110 0111123567777888865
No 39
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=86.05 E-value=3.4 Score=35.50 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=40.5
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCCCCeeE--eeEEEEE
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSNGLMAN--DGLEVIV 312 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~G~sas--d~F~V~V 312 (609)
.++|++...+.. .....+...|+.++.++=. ++. .....|++.+.|+|.++...+ -.+.|.|
T Consensus 37 ~i~Ysi~~~~~~-~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V 102 (105)
T 2omz_B 37 KVFYSITGQGAD-TPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITV 102 (105)
T ss_dssp CCEEEEEEBTTT-BSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBSSCCEEEEEEE
T ss_pred eEEEEEeCCCCC-CCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCCCceeeEEEEEEEE
Confidence 688888643311 1223688899988877654 443 335789999999999875444 4455554
No 40
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=85.57 E-value=7.4 Score=37.13 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred cCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEe-ecC-CCCceeEEEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 242 DHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYG-IPQ-LTDLGRREYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 242 D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G-~P~-~~dvG~~~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
|.+.+. .++|++...+. .-....|...|+.++.++= -++ ......|.+.+.|+|.+| .+.+-.+.|.|..
T Consensus 27 D~d~n~--~v~Ysi~~~~~-~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D 100 (213)
T 3qrb_A 27 NRDKET--KVFYSITGQGA-DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTD 100 (213)
T ss_dssp GGGGTS--CEEEEEESBTT-TBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEEC
T ss_pred CCCCCc--eEEEEEEcCCC-CCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCcccceEEEEEEEEE
Confidence 444444 68888874322 1223469999999887763 243 334578999999999988 4455567777764
No 41
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=84.09 E-value=3.4 Score=35.67 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=41.9
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
.++|++...+ ..-....+...|+.++.++=. ++. .....|++.+.|+|.++ ++.+-.+.|+|..
T Consensus 35 ~i~Y~i~~~~-~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~D 102 (110)
T 1ncg_A 35 SLRYSVTGPG-ADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102 (110)
T ss_dssp CCEEEEESBT-TTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBCSCCEEEEEEEC-
T ss_pred EEEEEEeCCC-CCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEECCCCceeeEEEEEEEEEE
Confidence 7888886431 111223788999988876543 433 33578999999999875 4555666666643
No 42
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=83.81 E-value=9.6 Score=38.43 Aligned_cols=40 Identities=8% Similarity=-0.124 Sum_probs=28.1
Q ss_pred CccceeccCCceEEeecCCCCceeEEEEEEEEcCCCCeeEe
Q psy12980 266 THWLQFDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMAND 306 (609)
Q Consensus 266 ~sWL~Fd~~t~tf~G~P~~~dvG~~~f~LtATDs~G~sasd 306 (609)
..| .|...+....-.|....-|.|.+.|+++|..|.++..
T Consensus 113 ~~W-dfgdg~~s~~~~~~y~~~G~YtV~LtVtn~~G~s~~~ 152 (260)
T 2c4x_A 113 FTT-SGTNATGVVVNTTEKAFKGERGLKWTVTSEGEGTAEL 152 (260)
T ss_dssp CEE-EEEEEEEEEEEESSCCSSSSCEEEEEEEEEEEEEEEE
T ss_pred eEE-ECCCCCCcccccceeeCCceEEEEEEEECCCCCEEEE
Confidence 467 4633333333356666669999999999999988776
No 43
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=83.54 E-value=5.5 Score=33.76 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=41.1
Q ss_pred eEEEEEec--cCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCCCCeeEeeEEEEE
Q psy12980 250 KLKLHLMT--MDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSNGLMANDGLEVIV 312 (609)
Q Consensus 250 ~L~lsl~~--~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~G~sasd~F~V~V 312 (609)
.++|++.. .++. ...+...|+.++.++=. ++. .....|++.+.|+|.+|...+....|.|
T Consensus 32 ~i~Ysi~~~~~~~~---~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~l~~~~~v~I 95 (99)
T 3k6d_A 32 GSKIKLYGKGVDQE---PKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEI 95 (99)
T ss_dssp TCEEEEESBTTTBS---STTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred cEEEEEecCcCCCC---CCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECCCCceeeEEEEEE
Confidence 57888864 2232 24688899998876654 333 3347899999999998876666555554
No 44
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=81.30 E-value=10 Score=32.01 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=40.3
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCCCCeeEeeEEEEE
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSNGLMANDGLEVIV 312 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~G~sasd~F~V~V 312 (609)
.++|++... |..-.......+|+.++.++=. |+. .....|++.+.|+|.+|...+....|.|
T Consensus 32 ~i~Ysi~~~-~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~l~~~~~v~I 95 (99)
T 3k6i_A 32 GAKFRLSGK-GVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDI 95 (99)
T ss_dssp SEEEEEESB-TTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEEEEEeCC-CCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCCCceeeeEEEEE
Confidence 577877642 1111123678899998877654 443 3458999999999998866555554444
No 45
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=81.27 E-value=1.8 Score=37.55 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=27.2
Q ss_pred ceeEEEEEEEEcCCCCee-EeeEEEEEECCCCCC
Q psy12980 287 LGRREYQLVCKDSNGLMA-NDGLEVIVKSPGPAY 319 (609)
Q Consensus 287 vG~~~f~LtATDs~G~sa-sd~F~V~V~~~p~~~ 319 (609)
.|.|.+..+|+|..|.+. +.+..|.|.+++...
T Consensus 60 ~G~htl~a~AtD~~G~~~tS~~v~vtV~~~~~~~ 93 (98)
T 3pe9_A 60 EGNHEISVIAYDDDDAASTPDSVKIFVKQARLEH 93 (98)
T ss_dssp SEEEEEEEEEEETTCCBCCCEEEEEEEECCC---
T ss_pred CccEEEEEEEEECCCCEEeeeEEEEEECchhhcc
Confidence 499999999999999976 789999999876443
No 46
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=81.05 E-value=6.9 Score=37.22 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=47.7
Q ss_pred ccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCC---CeeEeeEEEEEEC
Q psy12980 241 FDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG---LMANDGLEVIVKS 314 (609)
Q Consensus 241 ~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G---~sasd~F~V~V~~ 314 (609)
.|++.|. + +|++...+. ..|...|+.++.++=. ++ ......|.+.|.|+|.++ .+....+.|.|..
T Consensus 26 ~D~D~g~--~-~Y~i~~~~~-----~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~D 96 (203)
T 3ppe_A 26 SSVGNKN--A-MYIIEGESA-----NTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSD 96 (203)
T ss_dssp BCCCCTT--E-EEEEEETTB-----TTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTEECSCCEEEEEEEEC
T ss_pred ecCCCCC--c-EEEEecCCC-----CCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCCcccceEEEEEEEcC
Confidence 6788887 5 888763321 2699999998877643 33 334578999999999975 5666778888865
No 47
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=80.88 E-value=8.7 Score=32.55 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=39.7
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cCC-CCceeEEEEEEEEcCCCCeeEeeEEEEE
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQL-TDLGRREYQLVCKDSNGLMANDGLEVIV 312 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~~-~dvG~~~f~LtATDs~G~sasd~F~V~V 312 (609)
.++|++... |..-.......+|+.++.++=. ++. .....|++.+.|+|.+|...+....|.|
T Consensus 33 ~i~Ysi~~~-~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~l~~~~~v~I 96 (100)
T 3k6f_A 33 GSKFRLTGK-GVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEV 96 (100)
T ss_dssp TCEEEEEEB-TTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CEEEEEeCC-CCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCCCcccceEEEEE
Confidence 467777532 1111123678899998877653 443 3347899999999998876555555544
No 48
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.88 E-value=3.4 Score=36.46 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=46.0
Q ss_pred ccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCC--CeeEeeEEEEEEC
Q psy12980 241 FDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG--LMANDGLEVIVKS 314 (609)
Q Consensus 241 ~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G--~sasd~F~V~V~~ 314 (609)
.|++.|.--.++|++... +..-....+...|+.++.++=. ++ ......|++.|.|+|.++ ++.+-.+.|.|..
T Consensus 36 ~D~D~g~n~~i~Y~i~~~-~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~D 112 (123)
T 2yqg_A 36 SDLAEERGLKITYKYTGK-GITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLD 112 (123)
T ss_dssp CHHHHHHTCCCEEEEEEB-TTTBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCEEEEEECCEEEEEC
T ss_pred ECCCCCCCceEEEEEecC-CCCCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCceEEEEEEEEEEEE
Confidence 365555323577877643 1111223688899888866543 33 333578999999999876 4555667777764
No 49
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=79.50 E-value=0.72 Score=45.65 Aligned_cols=132 Identities=11% Similarity=-0.088 Sum_probs=69.5
Q ss_pred eeeeeeeeccc---ccCCCCCCCccccccCCC-CCc----------ccCcCccceeecCccEEEEcCCCCcccCCCCCee
Q psy12980 84 TVKNITWRGIG---HCEDSPPPPVVKVKLENQ-VPL----------IRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTR 149 (609)
Q Consensus 84 ~vk~~~~~~~g---~~~~~~~~~i~~v~~~N~-~P~----------v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~Gdt~ 149 (609)
.++..+.++-+ .|.+.. .-..+|..+|| +|+ ...+.-...+.|+..--..|-.=.=.|.|.|.-.
T Consensus 94 ~l~V~a~D~g~~~~~~~~~~-~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~ 172 (246)
T 2x2u_A 94 YLKVFLSPTSLREGECQWPG-CARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQI 172 (246)
T ss_dssp EEEEECC-------CCCTTT-EEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTS
T ss_pred EEEEEEEcCCCCCCcccceE-EEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCc
Confidence 66666666543 354332 34457888888 888 6666666677777654444433345788888777
Q ss_pred eEEEEEeccc-ceecccCccCcCccc-ccc---ccceeeEEEeeeecccccccCCCCCCceecccCCC-Cceec
Q psy12980 150 KLKLHLMTMD-RYVISNTTTGQAKPV-LTR---ALGRLMTVKNITWRGIGHCEDSPPPPVVKVKLENQ-VPLIR 217 (609)
Q Consensus 150 ~ltlsl~~~d-~~~~~~t~T~sgtp~-~~d---~~~~~v~v~~~~~~~~~~~~~~~~~~tv~v~~~N~-aPvv~ 217 (609)
.++|++..++ +|-.-|..||.-+-. .=| .-...++|.+.+.++. ..-.++..++|+|...|+ +|+..
T Consensus 173 ~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~-p~~ss~~~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 173 SVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGA-REEVVMVPFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp CEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC----CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred EEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCC-CcceEEEEEEEEEEEeCCCCCccC
Confidence 7889888763 443336666642211 001 1122445543332221 111112235677778887 77653
No 50
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=78.07 E-value=11 Score=36.13 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=42.3
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCCCe--eEeeEEEEEEC
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNGLM--ANDGLEVIVKS 314 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G~s--asd~F~V~V~~ 314 (609)
.++|++...+ ..-....|...|+.++.++=. ++ ......|.+.|.|+|.+|.. .+-.+.|.|..
T Consensus 33 ~i~Y~i~~~~-~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~D 100 (218)
T 3k5r_A 33 GSKFRLTGKG-VDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100 (218)
T ss_dssp TCEEEEEEBT-TTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCEEEEEEEEEEEEEC
T ss_pred eEEEEEEcCC-CCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCceeeeEEEEEEEEe
Confidence 6778776422 111224799999988866543 33 23347899999999988854 55567777754
No 51
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=74.74 E-value=1.6 Score=31.58 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhheeeecccC
Q psy12980 474 LVVIVIMLLCAALIACLLYRRRH 496 (609)
Q Consensus 474 aVIIa~mllia~iIaC~cyRrKR 496 (609)
+++..++++++.++++++++|||
T Consensus 18 ~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 18 GVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSC
T ss_pred ehhHHHHHHHHHHHHheeEeeec
Confidence 34444443332333333333333
No 52
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=73.92 E-value=0.67 Score=53.72 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=0.0
Q ss_pred CceeEEEEEEEEcCCCCeeEeeEEEEEEC
Q psy12980 286 DLGRREYQLVCKDSNGLMANDGLEVIVKS 314 (609)
Q Consensus 286 dvG~~~f~LtATDs~G~sasd~F~V~V~~ 314 (609)
..|+|++.|++||..|.+++++.+|.|.+
T Consensus 757 ~~GtYtVtLTVTD~~G~sst~t~tVtV~N 785 (785)
T 2y3u_A 757 KAGTYNVTLKVTDDKGATATESFTIEIKN 785 (785)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEEEEECCCCeEEEEEEEEecC
Confidence 45999999999999999999999999864
No 53
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=72.47 E-value=19 Score=34.62 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred ccCCCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCC---CeeEeeEEEEEEC
Q psy12980 241 FDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNG---LMANDGLEVIVKS 314 (609)
Q Consensus 241 ~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G---~sasd~F~V~V~~ 314 (609)
.|++.|+ ..++|++... + ...|...|+.++.++-. ++ ......|.+.|.|+|.++ ++....+.|.|..
T Consensus 27 ~D~D~gn-~~i~Y~l~~~-~----~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~D 99 (215)
T 2a4e_A 27 SDIDSGD-GNIKYILSGE-G----AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQD 99 (215)
T ss_dssp CTTCCSS-SCEEEEEEET-T----BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCEEEEEEEEEEEEEC
T ss_pred ECCCCCC-CeEEEEEECC-C----CCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCCCCcccccEEEEEEEee
Confidence 4777663 3688888632 2 12688999988876643 33 233478999999999875 4666678888865
No 54
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=72.20 E-value=15 Score=39.73 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=32.0
Q ss_pred cCCCCCccc-CcCc-----cceeecCccEEEEcCCCCcccCCCCCeeeEEEEEec
Q psy12980 109 LENQVPLIR-NPID-----HLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMT 157 (609)
Q Consensus 109 ~~N~~P~v~-~pi~-----~~~a~e~~~fs~~iP~~tF~D~d~Gdt~~ltlsl~~ 157 (609)
..|++|++. +.-. ++++.+|..+++. +..=+|+| ||.++|+++...
T Consensus 329 ~aNhaPVa~iag~~g~~p~~~~v~aG~tVtLd--As~SsDPD-GD~LtY~W~q~~ 380 (437)
T 2yhg_A 329 AANHHPVPVVNNDANEAVMYLNASAGSTVSLD--ASGSSDPD-GDSLNYSWSHYG 380 (437)
T ss_dssp GSCCCCBCCBTTBCCSSCEEEEECTTCEEEEE--CTTCBCTT-CCCEEEEEEECT
T ss_pred cCCCCCEEEecCCCcccccceEecCCCEEEEE--eeeeeCCC-CCeEEEEEEEeC
Confidence 579999987 3332 7888998888776 44445886 888666666443
No 55
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=71.10 E-value=1.7 Score=35.66 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=26.3
Q ss_pred ehHHHHHHHHHHHHHHhheeeeccc--CCCCcccCCCccccccccc
Q psy12980 471 VAPLVVIVIMLLCAALIACLLYRRR--HTGKMSVGNGVDSGILIRS 514 (609)
Q Consensus 471 ViPaVIIa~mllia~iIaC~cyRrK--RkgK~~i~d~deE~~tF~~ 514 (609)
-+-++|+|++|++.||++.+..|-| .+.|-+-+..|||.-+|++
T Consensus 17 RiGGLifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g~~~~ 62 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRS 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTSTHHH
T ss_pred hccchHHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccccHHH
Confidence 3668888888888888665433211 1223333344677777774
No 56
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=70.79 E-value=22 Score=34.09 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=42.5
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEee-cC-CCCceeEEEEEEEEcCCCC--eeEeeEEEEEEC
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI-PQ-LTDLGRREYQLVCKDSNGL--MANDGLEVIVKS 314 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~-P~-~~dvG~~~f~LtATDs~G~--sasd~F~V~V~~ 314 (609)
.++|++...+. .-....|...|+.++.++=. ++ ......|++.+.|+|.+|. +.+..+.|.|..
T Consensus 33 ~v~Ysi~~~~~-~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~D 100 (215)
T 2qvi_A 33 SLRYSVTGPGA-DQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 100 (215)
T ss_dssp CEEEEEESTTS-SSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCCEEEEEEEEEEEC
T ss_pred eEEEEEECCCC-CCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCceeeeEEEEEEEeE
Confidence 68888864321 11224688899888766533 33 2334789999999999874 456677777764
No 57
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=67.73 E-value=2.7 Score=31.55 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=6.6
Q ss_pred HHhheeeecccCCCC
Q psy12980 485 ALIACLLYRRRHTGK 499 (609)
Q Consensus 485 ~iIaC~cyRrKRkgK 499 (609)
.++.++.+|||++.|
T Consensus 28 ~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHTTCSSCC
T ss_pred HHHHHHhhhhhhhhc
Confidence 334444444444433
No 58
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.02 E-value=3 Score=31.28 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=5.1
Q ss_pred HhheeeecccCC
Q psy12980 486 LIACLLYRRRHT 497 (609)
Q Consensus 486 iIaC~cyRrKRk 497 (609)
++.++.+|||++
T Consensus 30 ~~~~~~RRr~~~ 41 (44)
T 2ks1_B 30 GIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHhhhhHhh
Confidence 344444444433
No 59
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=63.53 E-value=4.9 Score=33.29 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=8.5
Q ss_pred HHHHhheeeeccc
Q psy12980 483 CAALIACLLYRRR 495 (609)
Q Consensus 483 ia~iIaC~cyRrK 495 (609)
-+-||.|.||-|-
T Consensus 28 g~li~gcwcylrl 40 (90)
T 1zza_A 28 GALILGCWCYLRL 40 (90)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHH
Confidence 3445788888765
No 60
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=59.89 E-value=3.6 Score=33.44 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=12.6
Q ss_pred HHHHHHHHHhheeee----cccCCCCcc
Q psy12980 478 VIMLLCAALIACLLY----RRRHTGKMS 501 (609)
Q Consensus 478 a~mllia~iIaC~cy----RrKRkgK~~ 501 (609)
+.+++++++|++||. ||||-.+|+
T Consensus 18 ~~lll~~glcI~ccvkcrhRrrqAeRMS 45 (70)
T 2klu_A 18 AGLLLFIGLGIFFSVRSRHRRRQAERMS 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSSCTTSS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445666676554332 344456665
No 61
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=58.74 E-value=4.6 Score=30.33 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=7.0
Q ss_pred HHHH-hheeeecccCC
Q psy12980 483 CAAL-IACLLYRRRHT 497 (609)
Q Consensus 483 ia~i-IaC~cyRrKRk 497 (609)
++++ ++++++|||.+
T Consensus 26 i~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhheehhhhh
Confidence 4444 44455555544
No 62
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=58.29 E-value=46 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=28.3
Q ss_pred ceeEEEEEEEEcCCCCeeE-eeEEEEEECCCCCCcceEEE
Q psy12980 287 LGRREYQLVCKDSNGLMAN-DGLEVIVKSPGPAYYSASFS 325 (609)
Q Consensus 287 vG~~~f~LtATDs~G~sas-d~F~V~V~~~p~~~~~vef~ 325 (609)
.|.|.+.++|+|..|.... .++.|.|.. ...|.+.+.
T Consensus 60 ~G~htlta~A~D~aGn~s~s~~v~vtV~~--~~~Ptv~it 97 (190)
T 3pdd_A 60 VGAYNLKAVAVLSDGRRIESPVTPVLVKV--IVKPTVKLT 97 (190)
T ss_dssp SEEEEEEEEEEETTSCEEECCCEEEEEEC--CCCCEEEEE
T ss_pred CccEEEEEEEEECCCCEeeecceeEEecc--CCCCceeec
Confidence 5999999999999999865 468888874 334555544
No 63
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.60 E-value=5.5 Score=34.58 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=39.3
Q ss_pred ccccCCC-CCcccCcCccceeecCcc---EEEEcCCCCcccCCCCCeeeEEEEEecccc----eecccCccCc
Q psy12980 106 KVKLENQ-VPLIRNPIDHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTMDR----YVISNTTTGQ 170 (609)
Q Consensus 106 ~v~~~N~-~P~v~~pi~~~~a~e~~~---fs~~iP~~tF~D~d~Gdt~~ltlsl~~~d~----~~~~~t~T~s 170 (609)
+|..+|| +|+...+.-..++.|+.. .-.+|- -.|.|.|.-..++|++...++ |-.-|..||.
T Consensus 3 ~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~---A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~ 72 (119)
T 2yst_A 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLR---AADLDVGVNGQIEYVFGAATESVRRLLRLDETSGW 72 (119)
T ss_dssp CCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECC---CCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCE
T ss_pred eEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEE---EEeCCCCCCCeEEEEEecCCCccccEEEEeCCceE
Confidence 4677887 888877766666777664 223333 368888866667888776542 3223666664
No 64
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=54.28 E-value=32 Score=38.61 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=39.8
Q ss_pred eEEEEEeccCCCCCCCCccceeccCC-ceEEeecCCCCceeEEEEEEEEcCCCCee--EeeEEEEEECCC
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKN-QEFYGIPQLTDLGRREYQLVCKDSNGLMA--NDGLEVIVKSPG 316 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t-~tf~G~P~~~dvG~~~f~LtATDs~G~sa--sd~F~V~V~~~p 316 (609)
.+.|.|.--| ..|....... .+|..+|. |.|+|+|+|++..|... ..++.|+|.|+-
T Consensus 725 ~y~YrL~G~d------~~W~~~~~~~~~~ytnL~p----G~Y~f~V~a~n~~g~w~~~~~~l~i~I~Ppw 784 (795)
T 4a2l_A 725 TFAYKLEGYD------KEWYYLTDSRTVSYSNLPQ----GTYQFLVKAANSDGKWNPIPTALEIIVLPIW 784 (795)
T ss_dssp EEEEEEETTC------SSCEEESSCCEEEEECCCS----EEEEEEEEEECTTSCBCSSCEEEEEEECCCC
T ss_pred EEEEEEeCCC------CCccCCCCcCeEEecccCC----CeEEEEEEEECCCCccCCCceEEEEEEECCc
Confidence 4666664222 2798775333 36777763 89999999999999853 457888998743
No 65
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.78 E-value=22 Score=30.39 Aligned_cols=44 Identities=7% Similarity=-0.208 Sum_probs=25.1
Q ss_pred CCCCCcccCcCccceeecCc-cEEEEcCCCCcccCCCCCeeeEEEEEecc
Q psy12980 110 ENQVPLIRNPIDHLEAISGE-LLVYHVPEDTFFDHEDGGTRKLKLHLMTM 158 (609)
Q Consensus 110 ~N~~P~v~~pi~~~~a~e~~-~fs~~iP~~tF~D~d~Gdt~~ltlsl~~~ 158 (609)
.|.+|+.. .=.++++..+. .+.+. +..=.| ||+..+|.++...+
T Consensus 3 ~N~~PvA~-ag~d~~v~~~~~~v~L~--gs~S~D--Dg~~lsY~W~~~~G 47 (102)
T 2yrl_A 3 SGSSGQAD-AGPDKELTLPVDSTTLD--GSKSSD--DQKIISYLWEKTQG 47 (102)
T ss_dssp CCCCCSCC-CCSCEEEETTCCEEEEE--CCTTCS--SSCBCCCCEEEEES
T ss_pred CCCCCEEE-eCCCcEEecCCeEEEEE--eEeccC--CCCeEEEEEEECCC
Confidence 57888643 33456665554 33333 333345 68887777776554
No 66
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=53.35 E-value=24 Score=30.22 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=36.9
Q ss_pred ceEEeecCCCCceeEEEEEEEEcCC-CCeeEeeEEEEEECCCCCCcceEEE
Q psy12980 276 QEFYGIPQLTDLGRREYQLVCKDSN-GLMANDGLEVIVKSPGPAYYSASFS 325 (609)
Q Consensus 276 ~tf~G~P~~~dvG~~~f~LtATDs~-G~sasd~F~V~V~~~p~~~~~vef~ 325 (609)
|...|+|..+ +.|.+.|.|+|+. |.+..-.+.|-.++..+..-+.+|.
T Consensus 44 QVVaG~~~~~--~~Y~L~l~~~~~~~~~~~~y~a~Vw~kpW~n~~~L~sF~ 92 (95)
T 2kxg_A 44 QIIKGIPHWD--NYYNLILSAKHSPHEFSKFYNVVVLEKASDNSLKLVAFV 92 (95)
T ss_dssp EEECSSCSSC--CEEEEEEEEESCTTSCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred eEecCccccC--ccEEEEEEEecCCCCCceEEEEEEEEccCCCcEEEEEeE
Confidence 7888999988 8999999999997 7777777777777654434444554
No 67
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=52.76 E-value=21 Score=29.99 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=38.0
Q ss_pred eEEEEEeccCCCCCCCCccceeccCCceEEe---ecCCCCceeEEEEEEEEcCCCCeeEeeEEEE
Q psy12980 250 KLKLHLMTMDRTTIPPTHWLQFDAKNQEFYG---IPQLTDLGRREYQLVCKDSNGLMANDGLEVI 311 (609)
Q Consensus 250 ~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G---~P~~~dvG~~~f~LtATDs~G~sasd~F~V~ 311 (609)
.+++.+...+|..+. .|.......+.++| +|.+..-|.|.+.+...+ |...+..|.|+
T Consensus 37 ~~~v~l~dp~g~~v~--~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~--~~~~~~~F~Ve 97 (102)
T 2p9r_A 37 IPLVYIQDPKGNRIA--QWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS--GGRTEHPFTVE 97 (102)
T ss_dssp EEEEEEECTTSCEEE--EEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT--SCEEEEEEEEC
T ss_pred ceEEEEECCCCCEEE--EEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC--CCeEEEEEEEE
Confidence 356777777777665 77555555677777 455656699988876532 55566666653
No 68
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=51.27 E-value=3.2 Score=43.33 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=0.0
Q ss_pred Hhheeeec-ccCCCC
Q psy12980 486 LIACLLYR-RRHTGK 499 (609)
Q Consensus 486 iIaC~cyR-rKRkgK 499 (609)
+++.++|| ||++|+
T Consensus 302 ~~~~~~~~~k~~~~~ 316 (348)
T 1s7q_A 302 VVAFVMKMRRRNTGG 316 (348)
T ss_dssp ---------------
T ss_pred EEEEEEEEEEecCCC
Confidence 34556677 655543
No 69
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.86 E-value=8.1 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHH
Q psy12980 472 APLVVIVIMLLCAAL 486 (609)
Q Consensus 472 iPaVIIa~mllia~i 486 (609)
|.+++|.+++.++-+
T Consensus 13 IAGiVvG~v~gv~li 27 (38)
T 2k1k_A 13 IVAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHH
Confidence 556666655444433
No 70
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.60 E-value=11 Score=32.44 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=38.1
Q ss_pred ccccCCC-CCcccCcCccceeecCcc---EEEEcCCCCcccCCCCCeeeEEEEEecc---c--ceecccCccCc
Q psy12980 106 KVKLENQ-VPLIRNPIDHLEAISGEL---LVYHVPEDTFFDHEDGGTRKLKLHLMTM---D--RYVISNTTTGQ 170 (609)
Q Consensus 106 ~v~~~N~-~P~v~~pi~~~~a~e~~~---fs~~iP~~tF~D~d~Gdt~~ltlsl~~~---d--~~~~~~t~T~s 170 (609)
+|..+|| +|+...+.-..++.|+.. .-.++-| .|.|.|.-..++|++... + +|-.-|..||.
T Consensus 3 ~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A---~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~ 73 (114)
T 2ee0_A 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHA---TDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGL 73 (114)
T ss_dssp CCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCC---CSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCE
T ss_pred eEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEE---EeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeE
Confidence 4567887 888777655566666653 2233333 788888777788888652 2 23333666664
No 71
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=47.22 E-value=5.6 Score=32.32 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=17.6
Q ss_pred eehHHHHHHHHHHHHHHhheeeec
Q psy12980 470 FVAPLVVIVIMLLCAALIACLLYR 493 (609)
Q Consensus 470 ~ViPaVIIa~mllia~iIaC~cyR 493 (609)
.-+-++|+|++|++.||++.+..|
T Consensus 17 LRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred heecchhhHHHHHHHHHHHHHcCc
Confidence 346788999999988887665443
No 72
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.26 E-value=46 Score=37.06 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=45.3
Q ss_pred EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCC--ceEEeecCCCCceeEEEEEEEEcCCCCeeE--e
Q psy12980 231 LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKN--QEFYGIPQLTDLGRREYQLVCKDSNGLMAN--D 306 (609)
Q Consensus 231 f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t--~tf~G~P~~~dvG~~~f~LtATDs~G~sas--d 306 (609)
|++..-+-.|..++.- .+.|.|.-.| ..|...+... .+|..+|. |+|+|+|.|++..|.... .
T Consensus 674 ~~i~f~~l~y~~~~~~---~y~Y~L~G~d------~~W~~~~~~~~~~~ytnL~p----G~Y~f~V~a~~~~g~w~~~~~ 740 (758)
T 3ott_A 674 LSFELSDLPYSLDEKN---KFVYRLEGMD------KEWNFLKSNINRITYSNLSY----GNYQLIISKLERDGQPSNRPH 740 (758)
T ss_dssp EEEEEECCCTTCSSCC---CEEEEEETTC------SSCEECCTTCCEEEECSCCS----EEEEEEEEEBCTTSCBCSSCE
T ss_pred EEEEEEcccCCCCccC---eEEEEecCCC------CCccCCCCCcceEEecCCCC----ccEEEEEEEeCCCCCccCccE
Confidence 4443333345555432 5666664322 2798765433 35666653 999999999999998544 4
Q ss_pred eEEEEEEC
Q psy12980 307 GLEVIVKS 314 (609)
Q Consensus 307 ~F~V~V~~ 314 (609)
++.|+|.|
T Consensus 741 ~l~I~I~P 748 (758)
T 3ott_A 741 ILNIRILP 748 (758)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 68888887
No 73
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=45.26 E-value=35 Score=30.64 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=16.0
Q ss_pred eeEEEEEEEEcCCCCeeE
Q psy12980 288 GRREYQLVCKDSNGLMAN 305 (609)
Q Consensus 288 G~~~f~LtATDs~G~sas 305 (609)
|.|.|++.|+|.+|....
T Consensus 83 G~Y~~~v~a~d~~g~~~~ 100 (138)
T 3c12_A 83 GKYGITATQTDTAGAKSK 100 (138)
T ss_dssp EEEEEEEEEEETTCCEEE
T ss_pred ceEEEEEEEEECCCCEEE
Confidence 999999999998888654
No 74
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=45.13 E-value=7 Score=25.43 Aligned_cols=11 Identities=64% Similarity=1.540 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q psy12980 584 DTSPYHPPPPI 594 (609)
Q Consensus 584 ~~~~y~pppp~ 594 (609)
..-||+||||-
T Consensus 13 serpyhppppc 23 (26)
T 2jrw_A 13 SERPYHPPPPC 23 (26)
T ss_dssp CSSSCCSCSCC
T ss_pred ccCCCCCCCCC
Confidence 35799999984
No 75
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=38.97 E-value=2.2e+02 Score=25.60 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=40.4
Q ss_pred eeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCC--CCccceeccCCceEEeecCCCCceeEEEEEEEEcCC
Q psy12980 223 LEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIP--PTHWLQFDAKNQEFYGIPQLTDLGRREYQLVCKDSN 300 (609)
Q Consensus 223 ~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~--~~sWL~Fd~~t~tf~G~P~~~dvG~~~f~LtATDs~ 300 (609)
+.+..|+.|..+||+|- -.|. ...+.. .++.-|. ......-++....+.|. -|.+.|.++|...+
T Consensus 37 I~v~~Ge~~~I~L~~NP----TTGY--~W~~~~--~~~~vl~~l~~~~y~~~~~~~~~vGa-----gG~~~w~f~A~~~G 103 (132)
T 2wgn_B 37 LKLTQGQELVLTLPSNP----TTGF--RWELRN--PAASVLKRLGPEVYSNSEEDSGLVGS-----GGESTWRFRVAASG 103 (132)
T ss_dssp EEECTTCEEEEEECCCT----TTSC--EEEEEE--CCTTTEEECCSCCSCSSCSSCCCSSS-----SCCEEEEEEECSCE
T ss_pred EEEcCCCEEEEEeCCCC----CCCe--EEEEec--CCCceEEecccceecCCCCccCCcCC-----CceEEEEEEEcCCc
Confidence 58899999999999984 3455 333332 3332221 01111101011122222 28899999998865
Q ss_pred CCeeEeeEEEEEEC
Q psy12980 301 GLMANDGLEVIVKS 314 (609)
Q Consensus 301 G~sasd~F~V~V~~ 314 (609)
...+.+.-.+
T Consensus 104 ----~~~i~~~Y~R 113 (132)
T 2wgn_B 104 ----DDRLELVYRR 113 (132)
T ss_dssp ----EEEEEEEEEC
T ss_pred ----eEEEEEEEEC
Confidence 5555555443
No 76
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=38.32 E-value=6.7 Score=40.06 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=5.4
Q ss_pred EEEEEEecC
Q psy12980 376 TVVRWANRT 384 (609)
Q Consensus 376 TvV~w~N~T 384 (609)
+.|.|..+.
T Consensus 215 i~v~W~~~g 223 (315)
T 1cd1_A 215 VWVMWMRGD 223 (315)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEEcc
Confidence 466777643
No 77
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=42.57 E-value=7.5 Score=28.41 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=13.4
Q ss_pred eehHHHHHHHHHHHHHHhheeeecccCCCCc
Q psy12980 470 FVAPLVVIVIMLLCAALIACLLYRRRHTGKM 500 (609)
Q Consensus 470 ~ViPaVIIa~mllia~iIaC~cyRrKRkgK~ 500 (609)
.++.+++..+.+++..+|..+ |..|+|.|+
T Consensus 9 ~vl~avlal~vi~iisLIiLi-~~w~qKPrY 38 (39)
T 2l6w_A 9 VVISAILALVVLTIISLIILI-MLWQKKPRY 38 (39)
Confidence 444444444444444444443 233335665
No 78
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=35.23 E-value=10 Score=27.09 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=6.0
Q ss_pred HHHHhheeeecccC
Q psy12980 483 CAALIACLLYRRRH 496 (609)
Q Consensus 483 ia~iIaC~cyRrKR 496 (609)
+.++..-++-||||
T Consensus 22 ii~l~~~~~iRRr~ 35 (35)
T 1iij_A 22 ILVVVVGILIKRRR 35 (35)
T ss_dssp HHTTTTTHHHHHCC
T ss_pred HHHHHhheEEeecC
Confidence 33333334445543
No 79
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=32.95 E-value=18 Score=34.73 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=25.3
Q ss_pred eehHHHHHHHHHHHHHHhheeeecccCCCCc
Q psy12980 470 FVAPLVVIVIMLLCAALIACLLYRRRHTGKM 500 (609)
Q Consensus 470 ~ViPaVIIa~mllia~iIaC~cyRrKRkgK~ 500 (609)
|++|+-++.++||+|-+-|..+=||+|+++.
T Consensus 137 Y~lpFElaSvlLLvAmIGAIvLarr~~~~~~ 167 (184)
T 3rko_J 137 YVLAVELASMLLLAGLVVAFHVGREERAGEV 167 (184)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 7899999998888887777777788777665
No 80
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=32.86 E-value=20 Score=33.96 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred HHHHHhhccceeeeeeeeeccc-ccCCCCCCCccccccCCC-CCcccCcCccceeecCccEEEEcCCCCcccCCC---CC
Q psy12980 73 PVLTRALGRLMTVKNITWRGIG-HCEDSPPPPVVKVKLENQ-VPLIRNPIDHLEAISGELLVYHVPEDTFFDHED---GG 147 (609)
Q Consensus 73 ~~~~~~~~~~~~vk~~~~~~~g-~~~~~~~~~i~~v~~~N~-~P~v~~pi~~~~a~e~~~fs~~iP~~tF~D~d~---Gd 147 (609)
..|.+...+.|.++..+.++-+ .-......-..+|.++|| +|+...+.-...+.|+..--..|-.=.=.|.|. |.
T Consensus 61 ~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~ 140 (207)
T 3lnd_A 61 KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140 (207)
T ss_dssp SCCCGGGCCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSS
T ss_pred CCcCcccCCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCC
Confidence 3566777788899888887542 222222335678889995 887766654455555432111111112257776 55
Q ss_pred eeeEEEEEecccc
Q psy12980 148 TRKLKLHLMTMDR 160 (609)
Q Consensus 148 t~~ltlsl~~~d~ 160 (609)
-..++|++..+++
T Consensus 141 n~~i~Y~i~~~~~ 153 (207)
T 3lnd_A 141 SAKVVYSILQGQP 153 (207)
T ss_dssp TTCCEEEEEESGG
T ss_pred CcEEEEEEcCCCC
Confidence 4456666665544
No 81
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.42 E-value=34 Score=26.64 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=8.9
Q ss_pred HHHhheeeecccCCCCc
Q psy12980 484 AALIACLLYRRRHTGKM 500 (609)
Q Consensus 484 a~iIaC~cyRrKRkgK~ 500 (609)
+.++=|-+.+|||+..+
T Consensus 31 ~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 31 LAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHTTTTCCSCC
T ss_pred HHHHHcCcccCCCCCcc
Confidence 34444444456666555
No 82
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=30.61 E-value=38 Score=30.63 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=27.9
Q ss_pred ecccCCCCcccCCCcccccccccCCCCEEcccccccc-----------------cCCCCCCCCCeec--cCCCCCCCCCC
Q psy12980 492 YRRRHTGKMSVGNGVDSGILIRSKGIPVIFQDELEER-----------------LEVSSGTKSPIIL--KEEKPPLPPPE 552 (609)
Q Consensus 492 yRrKRkgK~~i~d~deE~~tF~~KGiPvIF~dElde~-----------------~~~~~~~~~P~Il--keEkpplpppe 552 (609)
.+|||+.|-.-. .|+.++|+ -|+|+++.-=|... |. .+. -.|- .+++.|-|||.
T Consensus 6 ~~~~r~srW~~~--~~~~k~~i-p~~pt~ip~~Lt~eq~~ay~~~~RieeIt~kL~--~g~--l~i~~~~~~RSPSPpP~ 78 (124)
T 4fxw_B 6 SKKRKRSRWNQD--TMEQKTVI-PGMPTVIPPGLTREQERAYIVQLQIEDLTRKLR--TGD--LGIPPNPEDRSPSPEPI 78 (124)
T ss_dssp ------CCBCCC-----------CCSCSBCCSSCCHHHHHHHHHHHHHHHHHHHHH--HCC--CCCCSSTTSSCCCCCCC
T ss_pred cccccccccCCC--cccccccC-CCCCeecCCCCCHHHHHHHHHHhhHHHHHHHHh--cCC--cCCCCCcccCCCCCCCc
Confidence 356677777532 24678999 79999887544332 11 000 0111 36889999999
Q ss_pred CCCCCC
Q psy12980 553 YNRDKN 558 (609)
Q Consensus 553 y~~~~~ 558 (609)
|.+.+.
T Consensus 79 Yd~~G~ 84 (124)
T 4fxw_B 79 YNSEGK 84 (124)
T ss_dssp BCTTSC
T ss_pred cCcccc
Confidence 997644
No 83
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A {Vibrio cholerae}
Probab=29.48 E-value=1.5e+02 Score=31.53 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=51.8
Q ss_pred eCCeEEEEcCCCc----cccCCCCCeeeEEEEEeccCCCCCCCCccc-eeccCC-ceEEeecCCCCceeEEEEEEEEcCC
Q psy12980 227 SGELLVYHVPEDT----FFDHEDGGTRKLKLHLMTMDRTTIPPTHWL-QFDAKN-QEFYGIPQLTDLGRREYQLVCKDSN 300 (609)
Q Consensus 227 ~G~~f~f~IP~dT----F~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL-~Fd~~t-~tf~G~P~~~dvG~~~f~LtATDs~ 300 (609)
.|-.-+|+|++.. |.=.-.|+ .+++++|...+|..+. +|- +.+..+ +.|.=.=.+...|.|...++++|.+
T Consensus 300 sgl~~eY~i~~g~~~l~f~~~~~~~-~~v~~~v~d~~~~~~~--~~~~~v~~~~~~~~tl~ls~~~aGhh~lvv~~~~~~ 376 (391)
T 2xwx_A 300 SGLAKEYEIGEQPIQLDLTLEAQGE-MSAELTVYNHHQKPLA--SWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRD 376 (391)
T ss_dssp ECCCSEEECCSSCCEEEEEEEEESS-EEEEEEEECTTSCEEE--EEEEEECTTCEEEEEEECSCCCSEEEEEEEEEEETT
T ss_pred ecCcceeEecCCcEEEEEEEEecCc-eEEEEEEEcCCCCccc--eeeEEEcCCCcceEEEEccCCCCccEEEEEEEECCC
Confidence 3445566666553 33222333 4677777777777766 442 233333 3344333333349999999999999
Q ss_pred CCeeEeeE-EEEEE
Q psy12980 301 GLMANDGL-EVIVK 313 (609)
Q Consensus 301 G~sasd~F-~V~V~ 313 (609)
|+.....+ .+.+.
T Consensus 377 G~~~~q~~~~f~L~ 390 (391)
T 2xwx_A 377 GNLQDQQTLDFMLV 390 (391)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CcEeeEEeccEEEe
Confidence 99998887 77654
No 84
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=29.25 E-value=1.7e+02 Score=24.91 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=35.0
Q ss_pred EEEeccCCCCCCCC-----ccceeccCCceEEeecCCCC-ceeEEEEEEEEcCCCCeeEeeEEEEEE
Q psy12980 253 LHLMTMDRTTIPPT-----HWLQFDAKNQEFYGIPQLTD-LGRREYQLVCKDSNGLMANDGLEVIVK 313 (609)
Q Consensus 253 lsl~~~Dg~~l~~~-----sWL~Fd~~t~tf~G~P~~~d-vG~~~f~LtATDs~G~sasd~F~V~V~ 313 (609)
+.++..+|..+..+ .-...+.......-+|+... -|.|.+..++.-..|-..+..|...|+
T Consensus 36 v~v~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~G~YtV~WrvvS~DGH~~~G~~~FtV~ 102 (102)
T 2c9r_A 36 AKLVMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKVDWRAVSSDTFPITGSVTFKVK 102 (102)
T ss_dssp EEEEEEECC-----CEEECEEEEECSSTTEEEEEESSCCCSEEEEEEEEECCTTCCCEEEEEEEEEC
T ss_pred EEEECCCCCeeeeccccccccceecCCCCcEEEEECCCCCCceEEEEEEEEecCCCccCCEEEEEEC
Confidence 34454555554421 23334433334334443333 399999999999999988888877763
No 85
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.84 E-value=85 Score=35.05 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=43.6
Q ss_pred EEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCccceeccCC-ceEEeecCCCCceeEEEEEEEEcCCCCee--Eee
Q psy12980 231 LVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKN-QEFYGIPQLTDLGRREYQLVCKDSNGLMA--NDG 307 (609)
Q Consensus 231 f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t-~tf~G~P~~~dvG~~~f~LtATDs~G~sa--sd~ 307 (609)
|++..=+-.|..++. . .++|.|.--| ..|....... .+|..+|. |+|+|+|+|++..|... ..+
T Consensus 703 ~~i~f~~l~y~~~~~-~--~y~YrL~G~d------~~W~~~~~~~~~~ytnL~p----G~Y~f~V~a~~~~g~w~~~~~~ 769 (781)
T 3v9f_A 703 FNLTFNVQDYSLANQ-V--EYAYMLKGLE------NSWYTINEQNSVTFRNIPP----GKYEFLVKARLHNQDWSEDTTS 769 (781)
T ss_dssp EEEEEECSCSGGGGG-E--EEEEEEETTE------EEEEEESSCSEEEECSCCS----EEEEEEEEEEETTSCCCSCCEE
T ss_pred EEEEEEecCCCCccc-c--EEEEEecCCC------CCccCcCCcceEEEcCCCC----ceEEEEEEEECCCCccCCCceE
Confidence 443333333555442 1 4555553222 2798776433 35666653 99999999999999843 346
Q ss_pred EEEEEEC
Q psy12980 308 LEVIVKS 314 (609)
Q Consensus 308 F~V~V~~ 314 (609)
+.|+|.|
T Consensus 770 l~i~I~p 776 (781)
T 3v9f_A 770 LRIHINP 776 (781)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 8888876
No 86
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.70 E-value=29 Score=25.06 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhe
Q psy12980 476 VIVIMLLCAALIAC 489 (609)
Q Consensus 476 IIa~mllia~iIaC 489 (609)
+++.++++++++.+
T Consensus 20 ~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 20 LLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344455555433
No 87
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=28.03 E-value=1.7e+02 Score=25.13 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=29.1
Q ss_pred eccCCceEEeecCCCC-ceeEEEEEEEEcCCCCeeEeeEEEEEE
Q psy12980 271 FDAKNQEFYGIPQLTD-LGRREYQLVCKDSNGLMANDGLEVIVK 313 (609)
Q Consensus 271 Fd~~t~tf~G~P~~~d-vG~~~f~LtATDs~G~sasd~F~V~V~ 313 (609)
.+....+..-+|+... -|.|.+..++.-..|-..+..|...|+
T Consensus 61 ~~~~~~~~~~~~l~~L~~G~YtV~WrvvS~DGH~~~G~~~FtV~ 104 (104)
T 1lyq_A 61 PGADPKSMVIIPREPLPAGTYRVDWRAVSSDTHPITGNYTFTVK 104 (104)
T ss_dssp ECSSTTEEEEEESSCCCSEEEEEEEEECCTTSCCEEEEEEEEEC
T ss_pred ecCCCCcEEEEECCCCCCceEEEEEEEEecCCCccCCEEEEEEC
Confidence 3433333334443332 399999999999999988888877763
No 88
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=25.61 E-value=1.1e+02 Score=27.98 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCceeEEEEEEEEcCCCCeeEeeEEEEEEC
Q psy12980 285 TDLGRREYQLVCKDSNGLMANDGLEVIVKS 314 (609)
Q Consensus 285 ~dvG~~~f~LtATDs~G~sasd~F~V~V~~ 314 (609)
...|.|.+.|+|+|..|. .+.+..+.|..
T Consensus 111 ~~~G~YtVtLtvtn~~G~-~~~t~~~~i~~ 139 (145)
T 2kzw_A 111 FNEGEYIVSLIVSNENDS-DSASVTIRALE 139 (145)
T ss_dssp SSCEEEEEEEEEECSSCE-EEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEcCCCC-eeEEEeeeeee
Confidence 345999999999999995 45555666654
No 89
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=25.34 E-value=2.4e+02 Score=24.33 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=43.6
Q ss_pred CCCCeeeEEEEEeccCCCCCCCCccceeccCCceEEeecCCCCceeEEEEEEEEcCCCCeeEeeEEEEEECCC
Q psy12980 244 EDGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGIPQLTDLGRREYQLVCKDSNGLMANDGLEVIVKSPG 316 (609)
Q Consensus 244 eDGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~P~~~dvG~~~f~LtATDs~G~sasd~F~V~V~~~p 316 (609)
|+-|...|++.+.-.||+.-. +.+....-+++|+-... .|.-++.|+.. | .+.+|+|.|.+.+
T Consensus 23 E~LDltGl~v~~~YsDgt~~~----~~lt~~~v~VsGfDs~~-~G~QtlTVtY~---G--~t~~f~V~V~~~~ 85 (98)
T 2l7y_A 23 DSLDLSEGRFAVAYSNDTMEE----HSFTDEGVEISGYDAQK-TGRQTLTLHYQ---G--HEVSFDVLVSPKA 85 (98)
T ss_dssp TCCCCCSCEEEEEETTSCEEE----EESCCTTSEEESCCTTS-CSSEEEEEEET---T--EEEEEEEEEECCC
T ss_pred CccccCCCEEEEEEcCCCEEE----EecccCCcEEEccCCCC-CCcEEEEEEEC---C--EEEEEEEEEEecc
Confidence 333444677777778887633 23444444899987775 89999988883 4 4578999998854
No 90
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=23.64 E-value=30 Score=36.72 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=32.7
Q ss_pred cccee--eEEeeeeccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCccEEEEee-hHHHHHHHHHHHHHHhheeeeccc
Q psy12980 420 KDYGV--KHASVIPTGICEGLKTPLHT-PGVERKPAYSGKNTPANASVEYLITFV-APLVVIVIMLLCAALIACLLYRRR 495 (609)
Q Consensus 420 peF~V--~~Vs~~g~G~C~~~t~~~~~-pe~~~p~~~~~~~~~~na~~~~Llv~V-iPaVIIa~mllia~iIaC~cyRrK 495 (609)
|+|+| ++-.+.=+|.|++-.-..++ |...-.. ....-+...|.|+.... =.++++++-++++.+.+|++.+||
T Consensus 363 ~~F~v~iC~~~~tC~a~C~PPkDHIV~~p~~h~~~---~~~~vS~Taw~W~~~l~GG~~~~~~i~~~~~~~v~~~~~~r~ 439 (442)
T 3j0c_A 363 PEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQT---FTAAVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQ 439 (442)
T ss_dssp CEEEEEETTEEEEEECCCBCCSCCEESSCCCCCCC---CSCCCCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCcceecCCccCCcccccCCccccccc---ccccchhhHHHHHHHHhcccHHHHHHHHHHHHHHhhhhhhhc
Confidence 45553 34334446888765332211 2211111 11123444788865444 123444444455566666544444
No 91
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.3
Probab=22.42 E-value=2.5e+02 Score=26.73 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=46.3
Q ss_pred eeeeeeCCeEEEEcCCCccccCC-CCCeeeEEEEEeccCCCCCCCCccceeccCCceEEee--------------cC---
Q psy12980 222 HLEAISGELLVYHVPEDTFFDHE-DGGTRKLKLHLMTMDRTTIPPTHWLQFDAKNQEFYGI--------------PQ--- 283 (609)
Q Consensus 222 ~~~at~G~~f~f~IP~dTF~D~e-DGdT~~L~lsl~~~Dg~~l~~~sWL~Fd~~t~tf~G~--------------P~--- 283 (609)
.+-+.+|...+|..|-| |.|.+ .| .|+- .+.|.. ...+|+.|.-.++.++-. |+
T Consensus 4 tvY~~eGe~vefSFpLn-F~~e~L~G---EL~W---qaeg~s-S~~~witFsl~n~~vsv~~~~~~~kl~~~~~lpL~l~ 75 (177)
T 1cid_A 4 TAYKSEGESAEFSFPLN-LGEESLQG---ELRW---KAEKAP-SSQSWITFSLKNQKVSVQKSTSNPKFQLSETLPLTLQ 75 (177)
T ss_dssp EEEEETTSCEEEECCCC-CSSCCEEE---EEEE---EESSCC-CSCCEEEEEEETTEEEEESCCCSSCCEECSBTTCEEE
T ss_pred eEEeecCcEEEEEEecc-cCcccccc---eEEE---eecCCC-ccceeEEEEeccceEEEEeecCCcccccccCccEEEE
Confidence 35678999999999988 88754 23 3444 234544 456899997777766654 32
Q ss_pred ---C--CCceeEEEEEEEE
Q psy12980 284 ---L--TDLGRREYQLVCK 297 (609)
Q Consensus 284 ---~--~dvG~~~f~LtAT 297 (609)
. .+.|++.+.|...
T Consensus 76 l~qvl~q~AGSG~ltL~l~ 94 (177)
T 1cid_A 76 IPQVSLQFAGSGNLTLTLD 94 (177)
T ss_dssp ECSCCGGGCEEEEEEEECS
T ss_pred ecccChhhCCceeEEEEec
Confidence 2 5679999888754
No 92
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=21.85 E-value=2.5e+02 Score=22.98 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCCceecCccceeeeeeCCeEEEEcCCCccccCCCCCeeeEEEEEeccCCCCCCCCcccee--ccCCceEEee-cCCCCc
Q psy12980 211 NQVPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQF--DAKNQEFYGI-PQLTDL 287 (609)
Q Consensus 211 N~aPvv~n~i~~~~at~G~~f~f~IP~dTF~D~eDGdT~~L~lsl~~~Dg~~l~~~sWL~F--d~~t~tf~G~-P~~~dv 287 (609)
..||.+.....++.+.+|+.+.|.....- ++ .-+++-+ .||.+|....-.++ +....+|.=. ....|.
T Consensus 11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G--~P------~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (107)
T 3knb_B 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLG--EP------PPVVVWE-KGGQQLAASERLSFPADGAEHGLLLTAALPTDA 81 (107)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEE--ES------CCEEEEE-ETTEECCCCSSEECCEETTEEEEEESSCCGGGC
T ss_pred CCCCEEEeCCCcEEEeCCCcEEEEEEEEE--ec------CCEEEEE-ECcccccceeeEEEeecCceEEEEEecCChhhC
Confidence 34677777777788888887776653210 01 0111111 23333332211111 1111111111 123355
Q ss_pred eeEEEEEEEEcCCCCeeEeeEEEEEEC
Q psy12980 288 GRREYQLVCKDSNGLMANDGLEVIVKS 314 (609)
Q Consensus 288 G~~~f~LtATDs~G~sasd~F~V~V~~ 314 (609)
|. |..+|+...|. ++..+.|.|..
T Consensus 82 G~--Y~C~a~N~~G~-~~~~~~l~V~~ 105 (107)
T 3knb_B 82 GV--YVCRARNAAGE-AYAAAAVTVLE 105 (107)
T ss_dssp EE--EEEEEEETTEE-EEEEEEEEEEC
T ss_pred EE--EEEEEEECCCE-EEEEEEEEEEc
Confidence 75 45678888875 45578888864
No 93
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=21.84 E-value=3.1e+02 Score=26.02 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=38.8
Q ss_pred CCCeeeEEEEEeccCCCCCCC-CccceeccCC--------ceEEeec-CCCCceeEEEEEEEEcCCCCeeEeeEEEEEEC
Q psy12980 245 DGGTRKLKLHLMTMDRTTIPP-THWLQFDAKN--------QEFYGIP-QLTDLGRREYQLVCKDSNGLMANDGLEVIVKS 314 (609)
Q Consensus 245 DGdT~~L~lsl~~~Dg~~l~~-~sWL~Fd~~t--------~tf~G~P-~~~dvG~~~f~LtATDs~G~sasd~F~V~V~~ 314 (609)
.|+ .++|+-. .+|.|.+. -.|..-+..- .+|.=.. ...|.|. |.-+|+...| +++..+.|.|..
T Consensus 231 ~g~--~v~l~C~-~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~--Y~C~a~N~~G-~~~~~~~l~V~~ 304 (313)
T 4fqp_A 231 GQN--EATLTCD-ARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTT--LICNVTNALG-ARQAELTVQVKE 304 (313)
T ss_dssp TCC--CEEEEEE-EEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEE--EEEEEECSSC-EEEEEEEEEEEC
T ss_pred CCC--eEEEEEE-ecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEE--EEEEEEeCCC-cEEEEEEEEEEe
Confidence 456 4555554 35666553 4788654321 1222111 2345675 5678999888 467789999987
Q ss_pred CCCC
Q psy12980 315 PGPA 318 (609)
Q Consensus 315 ~p~~ 318 (609)
.|+-
T Consensus 305 ~PP~ 308 (313)
T 4fqp_A 305 GPPH 308 (313)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5543
No 94
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.35 E-value=24 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=15.3
Q ss_pred ehHHHHHHHHHHHHHHhheeeec
Q psy12980 471 VAPLVVIVIMLLCAALIACLLYR 493 (609)
Q Consensus 471 ViPaVIIa~mllia~iIaC~cyR 493 (609)
++-.+|.++|..+.|.|..+-|.
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776665444
No 95
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.29 E-value=31 Score=24.75 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=11.7
Q ss_pred HHHHHhheeeecccCCC
Q psy12980 482 LCAALIACLLYRRRHTG 498 (609)
Q Consensus 482 lia~iIaC~cyRrKRkg 498 (609)
.+.|.|+.+-|||-+|.
T Consensus 19 IVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 19 IVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36678888888865554
No 96
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=21.27 E-value=60 Score=34.50 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=41.0
Q ss_pred ccchhhHHHHHhh-cccceee--EEeeeeccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCccEEEEee-hHHHHHHHH
Q psy12980 406 EDDLLQESLVTSL-EKDYGVK--HASVIPTGICEGLKTPLHT-PGVERKPAYSGKNTPANASVEYLITFV-APLVVIVIM 480 (609)
Q Consensus 406 ~dg~~s~~f~~am-~peF~V~--~Vs~~g~G~C~~~t~~~~~-pe~~~p~~~~~~~~~~na~~~~Llv~V-iPaVIIa~m 480 (609)
++|+++-.|..+. .|+|+|. +-.+.=+|.|++-.-..++ |...-.. ....-+...|.|+.... =.++++++-
T Consensus 348 ~~g~~t~hFSTas~~~~F~v~iC~~~~tC~a~C~PPkDHIV~~p~~h~~~---~~~~vS~Taw~W~~~l~gG~~~~~~i~ 424 (439)
T 3j0f_E 348 EKGAVTVHFSTASPQANFIVSLCGKKTTCNAECKPPADHIVSTPHKNDQE---FQAAISKTSWSWLFALFGGASSLLIIG 424 (439)
T ss_pred ccceEEEEEecCCCCCCEEEEeccCcceecCCCcCCcccccCCccccccc---cccccchhHHHHHHHHhcccHHHHHHH
Confidence 4566666666654 5777753 3333336777654322211 2211111 11123445777755333 123444444
Q ss_pred HHHHHHhheeeeccc
Q psy12980 481 LLCAALIACLLYRRR 495 (609)
Q Consensus 481 llia~iIaC~cyRrK 495 (609)
++++.+.+|++.+||
T Consensus 425 ~~i~~~v~~~~~~r~ 439 (439)
T 3j0f_E 425 LMIFACSMMLTSTRR 439 (439)
T ss_pred HHHHHHhhheeeecC
Confidence 555666777665554
No 97
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=20.25 E-value=1.3e+02 Score=24.72 Aligned_cols=27 Identities=26% Similarity=0.044 Sum_probs=21.4
Q ss_pred CceeEEEEEEEEcCCCCeeEeeEEEEEE
Q psy12980 286 DLGRREYQLVCKDSNGLMANDGLEVIVK 313 (609)
Q Consensus 286 dvG~~~f~LtATDs~G~sasd~F~V~V~ 313 (609)
..|.|...|++++ ++.++....+|.|.
T Consensus 53 ~~G~YtV~Ltv~~-g~~~~~a~~~V~V~ 79 (80)
T 1b4r_A 53 LPGRYHVTAVLAL-GAGSALLGTDVQVE 79 (80)
T ss_dssp SSEEEEEEEEEEC-SSCEEEEEEEEEEB
T ss_pred CCcEEEEEEEEEe-CCceEEEEEEEEEE
Confidence 3499999999994 44578888888874
No 98
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.01 E-value=49 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=17.4
Q ss_pred ehHHHHHHHHHHHHHHhheeeec
Q psy12980 471 VAPLVVIVIMLLCAALIACLLYR 493 (609)
Q Consensus 471 ViPaVIIa~mllia~iIaC~cyR 493 (609)
-+-++|++++|++.||++.+..|
T Consensus 20 RigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 20 RVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeccchhHHHHHHHHHHHHHcCc
Confidence 46788999999988887665444
Done!