RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12980
         (609 letters)



>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 103

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 213 VPLIRNPIDHLEAISGELLVYHVPEDTFFDHEDGGTRKLKLHLMTMDRTTIPPTHWLQFD 272
           VP +   I    A+ G      +P D              + +    +  +P   WL +D
Sbjct: 2   VPTV-VGIPDGTAVVGRSFRVSIPTDLIASSG------EIIKVSAAGKEALP--SWLHWD 52

Query: 273 AKNQEFYGIPQLTDLGR-----REYQLVCKDSNGLMANDGLEVIV 312
             +    G+P  TD G         +L    S+    +    + V
Sbjct: 53  PHSHILEGLPLDTDKGVHYISVSAARLGANGSHVPQTSSVFSIEV 97


>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 108

 Score = 27.1 bits (60), Expect = 2.2
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 309 EVIVKSPGPAYYSASFSLTLARPSSTFAQPAAQ-RAFLEKLAGLFG 353
           + + K+P P YY+  FS   +   + + + A +  +      G  G
Sbjct: 1   DFLSKTPEPPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLG 46


>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 92

 Score = 26.2 bits (58), Expect = 3.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 513 RSKGIPVIFQDELEERLEVSSGTKSPIIL 541
           R+ G+P + ++EL   LE  +G K+  ++
Sbjct: 62  RALGVPTLTEEELYRLLEARTGKKAEELV 90


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 27.2 bits (59), Expect = 4.7
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 467 LITFVAPLVVIVIMLLCAALIACLLYRRRHTGKMSVGNGVDSGILI 512
           + T V  L+ + + +    ++ACL+      GK      +     +
Sbjct: 22  VWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAV 67


>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 27.6 bits (61), Expect = 4.8
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 6/105 (5%)

Query: 419 EKDYGVKHASVIPTGICEGLKTPLHTPGVERKPAYSGKNTPANASVEYLITFVAPLVVIV 478
           +   G      I  G+ + +      P       Y  K   +       I ++AP++  +
Sbjct: 162 KYGIGSGIGLFIAAGVSQTIFVGALGP-----EGYLWKFLNSLIQGVPNIEYIAPIIGTI 216

Query: 479 IMLLCAALIACLLYRR-RHTGKMSVGNGVDSGILIRSKGIPVIFQ 522
           I+ L      C+        G++    G      +    IPVI  
Sbjct: 217 IVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILA 261


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,317,343
Number of extensions: 111569
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 8
Length of query: 609
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 518
Effective length of database: 1,158,166
Effective search space: 599929988
Effective search space used: 599929988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.1 bits)