Query psy12983
Match_columns 838
No_of_seqs 695 out of 5276
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:08:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0342|consensus 100.0 1.8E-73 3.9E-78 605.1 39.2 444 389-837 77-522 (543)
2 KOG0345|consensus 100.0 3.2E-69 7E-74 568.2 40.4 441 393-836 3-450 (567)
3 KOG0343|consensus 100.0 4.1E-69 8.8E-74 575.0 38.5 441 392-837 67-510 (758)
4 KOG0348|consensus 100.0 3E-64 6.6E-69 536.4 36.6 446 387-836 129-660 (708)
5 KOG0330|consensus 100.0 4.8E-62 1.1E-66 503.3 33.5 382 392-783 59-441 (476)
6 KOG0331|consensus 100.0 6.2E-60 1.3E-64 520.7 36.0 362 394-760 91-458 (519)
7 KOG0338|consensus 100.0 1.2E-58 2.6E-63 490.9 31.7 390 394-790 181-577 (691)
8 COG0513 SrmB Superfamily II DN 100.0 2.3E-57 5.1E-62 522.1 39.8 360 394-761 29-392 (513)
9 KOG0328|consensus 100.0 9.7E-57 2.1E-61 445.2 28.0 369 390-769 23-393 (400)
10 PRK04837 ATP-dependent RNA hel 100.0 1.1E-54 2.3E-59 494.1 41.0 362 392-760 6-372 (423)
11 PTZ00110 helicase; Provisional 100.0 1.4E-54 3.1E-59 503.8 42.5 362 393-759 129-493 (545)
12 PRK11634 ATP-dependent RNA hel 100.0 1.3E-53 2.8E-58 499.7 48.6 366 394-770 6-373 (629)
13 KOG0340|consensus 100.0 4.1E-55 8.8E-60 447.1 30.2 372 392-771 5-383 (442)
14 KOG0333|consensus 100.0 1.5E-54 3.2E-59 461.8 33.5 361 393-760 244-634 (673)
15 KOG0346|consensus 100.0 2.4E-54 5.1E-59 451.7 33.2 428 394-828 19-497 (569)
16 PRK11776 ATP-dependent RNA hel 100.0 9.8E-54 2.1E-58 491.4 41.8 355 394-760 4-359 (460)
17 PRK10590 ATP-dependent RNA hel 100.0 1.9E-53 4.1E-58 487.1 41.5 359 395-760 2-362 (456)
18 PRK04537 ATP-dependent RNA hel 100.0 2.7E-53 5.9E-58 494.5 41.4 361 394-760 9-374 (572)
19 PRK11192 ATP-dependent RNA hel 100.0 1.6E-52 3.5E-57 478.3 43.0 359 395-760 2-362 (434)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-52 3.3E-57 485.5 42.6 366 394-767 121-496 (518)
21 KOG0326|consensus 100.0 2.5E-54 5.4E-59 434.5 22.5 366 393-770 84-450 (459)
22 PRK01297 ATP-dependent RNA hel 100.0 1.2E-50 2.6E-55 467.0 43.2 361 393-760 86-452 (475)
23 KOG0336|consensus 100.0 2.6E-51 5.6E-56 424.2 29.5 352 403-759 227-581 (629)
24 PTZ00424 helicase 45; Provisio 100.0 6.2E-50 1.3E-54 453.2 40.2 356 394-760 28-384 (401)
25 KOG0335|consensus 100.0 9.7E-51 2.1E-55 440.2 28.2 368 395-768 75-466 (482)
26 KOG0347|consensus 100.0 1.8E-50 3.9E-55 432.3 23.1 362 392-759 179-579 (731)
27 KOG0341|consensus 100.0 5.2E-50 1.1E-54 411.9 18.9 350 394-751 170-529 (610)
28 KOG0332|consensus 100.0 7E-49 1.5E-53 403.4 26.2 360 388-760 84-454 (477)
29 KOG0339|consensus 100.0 2.9E-48 6.4E-53 411.2 31.5 360 392-758 221-583 (731)
30 PLN03137 ATP-dependent DNA hel 100.0 1.1E-46 2.3E-51 445.0 37.4 348 393-761 434-798 (1195)
31 KOG0350|consensus 100.0 2.3E-47 4.9E-52 405.2 28.3 352 403-759 144-549 (620)
32 TIGR03817 DECH_helic helicase/ 100.0 3.2E-46 7E-51 445.6 39.5 358 396-770 14-409 (742)
33 KOG0327|consensus 100.0 2.9E-47 6.4E-52 396.0 25.7 366 394-772 26-393 (397)
34 TIGR00614 recQ_fam ATP-depende 100.0 2.2E-45 4.9E-50 421.8 38.4 327 414-761 7-344 (470)
35 COG1197 Mfd Transcription-repa 100.0 2.5E-46 5.4E-51 439.2 29.3 403 307-751 483-914 (1139)
36 TIGR00580 mfd transcription-re 100.0 2.8E-45 6.2E-50 440.9 33.6 396 316-750 349-770 (926)
37 KOG0334|consensus 100.0 1.1E-45 2.4E-50 426.0 28.5 361 392-758 363-728 (997)
38 PRK11057 ATP-dependent DNA hel 100.0 1.6E-44 3.5E-49 425.3 37.6 333 406-761 12-354 (607)
39 KOG0337|consensus 100.0 3.4E-45 7.4E-50 381.5 24.1 358 393-760 20-378 (529)
40 KOG4284|consensus 100.0 5.9E-45 1.3E-49 395.1 26.6 355 392-758 23-388 (980)
41 TIGR01389 recQ ATP-dependent D 100.0 8.7E-44 1.9E-48 420.3 35.8 330 409-762 3-343 (591)
42 PRK10689 transcription-repair 100.0 6.5E-44 1.4E-48 437.8 34.6 392 316-749 498-918 (1147)
43 COG0514 RecQ Superfamily II DN 100.0 3.6E-42 7.7E-47 387.0 31.3 335 409-764 7-351 (590)
44 PRK02362 ski2-like helicase; P 100.0 1.9E-41 4.2E-46 409.0 38.0 339 395-751 2-398 (737)
45 PRK13767 ATP-dependent helicas 100.0 5.1E-41 1.1E-45 408.8 40.9 345 403-749 18-397 (876)
46 KOG0344|consensus 100.0 3.8E-42 8.2E-47 374.8 25.4 373 403-779 143-528 (593)
47 PRK00254 ski2-like helicase; P 100.0 1.6E-40 3.4E-45 400.1 38.4 345 395-758 2-397 (720)
48 PRK10917 ATP-dependent DNA hel 100.0 8E-40 1.7E-44 389.4 37.8 324 409-760 253-603 (681)
49 COG1201 Lhr Lhr-like helicases 100.0 3E-39 6.6E-44 375.7 38.0 337 403-749 8-361 (814)
50 TIGR00643 recG ATP-dependent D 100.0 2.9E-39 6.4E-44 382.3 36.3 314 407-748 225-564 (630)
51 PRK01172 ski2-like helicase; P 100.0 1.8E-38 3.8E-43 380.7 35.9 351 395-765 2-395 (674)
52 KOG0329|consensus 100.0 7.3E-40 1.6E-44 320.7 17.1 323 392-759 40-365 (387)
53 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.9E-38 8.5E-43 368.5 34.7 320 414-749 12-390 (844)
54 PRK09751 putative ATP-dependen 100.0 8.3E-37 1.8E-41 376.3 36.3 306 438-748 1-383 (1490)
55 KOG0352|consensus 100.0 1.8E-36 3.9E-41 315.9 22.5 334 406-761 6-373 (641)
56 PRK09401 reverse gyrase; Revie 100.0 3.2E-35 7E-40 362.0 37.6 284 414-721 77-410 (1176)
57 COG1200 RecG RecG-like helicas 100.0 1.5E-35 3.2E-40 331.9 31.2 325 408-760 253-605 (677)
58 KOG0351|consensus 100.0 4.2E-36 9.1E-41 356.4 27.9 337 406-762 251-604 (941)
59 COG1111 MPH1 ERCC4-like helica 100.0 5.6E-35 1.2E-39 314.3 32.9 327 416-753 13-484 (542)
60 COG1202 Superfamily II helicas 100.0 7.8E-36 1.7E-40 321.4 22.9 338 394-750 194-553 (830)
61 PHA02653 RNA helicase NPH-II; 100.0 1E-34 2.2E-39 338.7 31.8 313 420-755 166-519 (675)
62 PRK14701 reverse gyrase; Provi 100.0 1.1E-34 2.4E-39 363.9 31.4 331 406-760 67-466 (1638)
63 PHA02558 uvsW UvsW helicase; P 100.0 2.9E-34 6.3E-39 331.6 30.7 309 416-746 112-449 (501)
64 COG1204 Superfamily II helicas 100.0 1.6E-34 3.4E-39 341.4 28.6 339 403-755 16-414 (766)
65 TIGR01587 cas3_core CRISPR-ass 100.0 3.2E-34 6.9E-39 319.7 28.6 301 435-751 1-337 (358)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.2E-34 1.3E-38 339.7 32.4 305 422-753 6-339 (819)
67 PRK11664 ATP-dependent RNA hel 100.0 1.4E-33 3E-38 337.6 28.9 303 423-752 10-341 (812)
68 KOG0952|consensus 100.0 1.6E-33 3.5E-38 322.0 25.6 367 414-789 106-541 (1230)
69 PRK12898 secA preprotein trans 100.0 3.4E-32 7.4E-37 312.5 36.4 321 414-754 100-590 (656)
70 KOG0353|consensus 100.0 5.4E-33 1.2E-37 285.5 23.5 345 394-758 69-475 (695)
71 COG1205 Distinct helicase fami 100.0 2.4E-32 5.2E-37 327.3 32.9 334 403-748 55-420 (851)
72 TIGR01054 rgy reverse gyrase. 100.0 3.4E-32 7.4E-37 335.8 35.0 288 408-720 68-408 (1171)
73 PRK09200 preprotein translocas 100.0 4.2E-31 9.1E-36 309.7 39.7 320 414-752 75-543 (790)
74 PRK13766 Hef nuclease; Provisi 100.0 4.4E-31 9.5E-36 322.6 39.3 325 417-752 14-481 (773)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-31 2.3E-36 297.1 30.4 292 422-734 1-357 (357)
76 TIGR03714 secA2 accessory Sec 100.0 1.2E-30 2.6E-35 303.0 37.5 321 414-753 67-540 (762)
77 KOG0354|consensus 100.0 1.8E-31 3.8E-36 303.5 29.3 324 417-751 61-530 (746)
78 TIGR00963 secA preprotein tran 100.0 5.2E-30 1.1E-34 295.7 38.3 320 414-753 53-520 (745)
79 TIGR00603 rad25 DNA repair hel 100.0 1.6E-30 3.4E-35 302.1 28.8 323 418-766 255-629 (732)
80 KOG0349|consensus 100.0 1E-30 2.2E-35 272.9 22.0 274 471-749 289-614 (725)
81 PRK05580 primosome assembly pr 100.0 1.4E-28 3.1E-33 291.9 37.8 316 418-758 144-557 (679)
82 KOG0951|consensus 100.0 3.4E-29 7.4E-34 289.4 24.3 356 403-768 296-720 (1674)
83 PRK11131 ATP-dependent RNA hel 100.0 4.1E-28 9E-33 294.6 30.9 303 420-753 76-414 (1294)
84 PRK09694 helicase Cas3; Provis 100.0 2.4E-27 5.1E-32 283.2 33.1 312 417-737 285-663 (878)
85 TIGR00595 priA primosomal prot 100.0 4E-27 8.6E-32 270.1 31.3 295 437-756 1-387 (505)
86 PRK04914 ATP-dependent helicas 100.0 9.9E-27 2.2E-31 279.5 34.9 337 418-765 152-621 (956)
87 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-27 3.4E-32 270.3 26.5 294 418-735 36-375 (442)
88 KOG0947|consensus 100.0 1.5E-26 3.1E-31 262.2 29.5 325 413-760 293-735 (1248)
89 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.6E-26 5.6E-31 280.2 28.4 302 424-753 73-407 (1283)
90 PRK13104 secA preprotein trans 99.9 1.1E-24 2.4E-29 254.8 37.6 319 414-752 79-589 (896)
91 cd00268 DEADc DEAD-box helicas 99.9 5.3E-26 1.2E-30 232.7 23.0 201 396-602 1-201 (203)
92 COG4581 Superfamily II RNA hel 99.9 2.3E-25 5E-30 263.2 28.0 318 412-749 114-536 (1041)
93 PRK12906 secA preprotein trans 99.9 3.2E-24 6.9E-29 250.1 36.2 319 414-752 77-555 (796)
94 KOG0948|consensus 99.9 8.6E-26 1.9E-30 250.2 20.4 327 414-760 126-550 (1041)
95 PRK12904 preprotein translocas 99.9 9.3E-24 2E-28 247.1 37.6 318 414-752 78-575 (830)
96 PRK11448 hsdR type I restricti 99.9 1.6E-24 3.4E-29 266.3 30.6 308 418-736 413-800 (1123)
97 KOG0950|consensus 99.9 4.4E-25 9.5E-30 252.7 23.2 342 404-764 208-625 (1008)
98 COG4098 comFA Superfamily II D 99.9 2E-23 4.3E-28 214.2 30.6 308 418-755 97-421 (441)
99 KOG0338|consensus 99.9 6.8E-27 1.5E-31 249.6 2.3 165 89-277 286-468 (691)
100 PRK12899 secA preprotein trans 99.9 1.7E-22 3.7E-27 235.9 37.5 144 403-556 69-228 (970)
101 PRK13107 preprotein translocas 99.9 9.9E-22 2.1E-26 229.4 35.2 319 414-752 79-593 (908)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 2.5E-23 5.5E-28 206.1 17.9 164 420-589 1-167 (169)
103 COG1203 CRISPR-associated heli 99.9 4.4E-22 9.5E-27 238.9 22.2 335 418-758 195-558 (733)
104 PLN03142 Probable chromatin-re 99.9 1.6E-20 3.5E-25 226.7 29.7 319 418-750 169-599 (1033)
105 COG1198 PriA Primosomal protei 99.9 1.6E-20 3.5E-25 218.4 28.0 319 417-760 197-613 (730)
106 COG1643 HrpA HrpA-like helicas 99.9 6.3E-21 1.4E-25 224.9 23.4 307 420-751 52-388 (845)
107 KOG0342|consensus 99.9 2.5E-22 5.5E-27 215.2 6.7 164 90-274 190-369 (543)
108 KOG0330|consensus 99.8 2.8E-22 6E-27 208.8 3.3 164 89-276 163-341 (476)
109 COG0556 UvrB Helicase subunit 99.8 4E-19 8.7E-24 192.3 26.7 166 574-751 386-558 (663)
110 TIGR00631 uvrb excinuclease AB 99.8 6.5E-19 1.4E-23 207.1 30.9 132 627-760 425-563 (655)
111 COG1110 Reverse gyrase [DNA re 99.8 1.2E-18 2.6E-23 201.0 30.9 280 414-720 79-416 (1187)
112 KOG0922|consensus 99.8 2.5E-19 5.4E-24 199.8 24.6 307 420-752 53-392 (674)
113 PRK12900 secA preprotein trans 99.8 1.1E-18 2.3E-23 204.8 29.8 128 623-753 577-714 (1025)
114 COG4096 HsdR Type I site-speci 99.8 4E-19 8.7E-24 202.4 21.7 301 417-739 164-528 (875)
115 TIGR00348 hsdR type I site-spe 99.8 2.5E-18 5.5E-23 204.5 28.7 302 418-735 238-633 (667)
116 KOG0920|consensus 99.8 2.1E-18 4.6E-23 202.5 26.9 315 420-752 175-546 (924)
117 KOG0343|consensus 99.8 7E-21 1.5E-25 205.6 5.2 165 89-276 175-356 (758)
118 TIGR01407 dinG_rel DnaQ family 99.8 1.2E-17 2.6E-22 204.8 33.7 331 403-746 231-811 (850)
119 PRK12326 preprotein translocas 99.8 1E-16 2.2E-21 183.6 35.3 320 414-754 75-551 (764)
120 KOG0949|consensus 99.8 3E-18 6.4E-23 195.5 21.6 164 415-588 509-675 (1330)
121 KOG0923|consensus 99.8 4.9E-18 1.1E-22 187.1 21.1 307 418-749 265-605 (902)
122 PRK05298 excinuclease ABC subu 99.8 9.2E-17 2E-21 190.5 31.6 123 628-752 430-559 (652)
123 COG0513 SrmB Superfamily II DN 99.8 3.6E-19 7.9E-24 205.7 10.3 167 88-277 133-315 (513)
124 KOG4150|consensus 99.8 7.9E-18 1.7E-22 181.9 18.2 336 409-756 277-648 (1034)
125 smart00487 DEXDc DEAD-like hel 99.8 2.1E-17 4.6E-22 166.9 20.3 186 413-605 3-190 (201)
126 KOG1123|consensus 99.8 3.7E-18 8.1E-23 182.4 14.2 323 417-764 301-673 (776)
127 PRK13103 secA preprotein trans 99.8 5.5E-16 1.2E-20 181.8 33.4 318 414-752 79-593 (913)
128 KOG0926|consensus 99.8 1.3E-17 2.9E-22 186.7 18.9 309 422-749 260-703 (1172)
129 KOG0924|consensus 99.7 1.1E-16 2.3E-21 176.7 20.6 306 418-749 356-696 (1042)
130 PRK07246 bifunctional ATP-depe 99.7 3.5E-15 7.6E-20 180.7 34.7 326 414-760 242-795 (820)
131 KOG0345|consensus 99.7 7.5E-18 1.6E-22 179.8 4.4 163 89-273 114-295 (567)
132 KOG0385|consensus 99.7 3E-15 6.5E-20 168.0 24.2 320 418-751 167-600 (971)
133 PRK12903 secA preprotein trans 99.7 3.8E-14 8.1E-19 164.8 33.7 318 414-752 75-541 (925)
134 CHL00122 secA preprotein trans 99.7 4.2E-14 9.1E-19 165.5 34.2 276 414-708 73-490 (870)
135 KOG0340|consensus 99.7 5.3E-17 1.2E-21 167.8 6.9 165 89-277 109-296 (442)
136 cd00079 HELICc Helicase superf 99.7 9.4E-16 2E-20 144.7 14.0 119 627-746 11-131 (131)
137 KOG0331|consensus 99.7 9.2E-17 2E-21 178.8 6.6 182 73-276 172-382 (519)
138 KOG0953|consensus 99.6 3.6E-15 7.7E-20 162.3 17.9 281 433-760 191-486 (700)
139 KOG0925|consensus 99.6 1.9E-14 4.1E-19 154.2 22.0 324 394-750 25-387 (699)
140 PRK12902 secA preprotein trans 99.6 4.8E-13 1E-17 156.2 35.6 131 414-556 82-218 (939)
141 KOG0346|consensus 99.6 1.4E-16 2.9E-21 168.7 5.0 151 100-273 140-306 (569)
142 KOG0387|consensus 99.6 2.5E-14 5.3E-19 161.7 22.3 322 417-751 204-659 (923)
143 COG4889 Predicted helicase [Ge 99.6 2.1E-15 4.5E-20 170.2 12.9 317 416-747 159-583 (1518)
144 KOG0951|consensus 99.6 1.2E-14 2.5E-19 170.2 18.9 323 417-767 1142-1511(1674)
145 PRK08074 bifunctional ATP-depe 99.6 5.4E-13 1.2E-17 164.7 34.8 121 640-760 750-905 (928)
146 PF00271 Helicase_C: Helicase 99.6 1.4E-15 3.1E-20 130.2 8.5 77 660-736 1-77 (78)
147 KOG0390|consensus 99.6 2.8E-13 6.1E-18 157.3 30.1 338 418-763 238-723 (776)
148 TIGR03117 cas_csf4 CRISPR-asso 99.6 9.9E-13 2.1E-17 152.7 33.2 116 641-758 469-625 (636)
149 cd00046 DEXDc DEAD-like helica 99.6 2.1E-14 4.6E-19 136.3 15.8 144 434-584 1-144 (144)
150 KOG0341|consensus 99.6 2.3E-16 5.1E-21 164.0 0.6 179 89-294 286-479 (610)
151 KOG1000|consensus 99.6 3.5E-13 7.5E-18 144.9 24.5 323 394-742 182-593 (689)
152 KOG0384|consensus 99.6 1.3E-13 2.9E-18 162.1 21.4 336 393-751 353-812 (1373)
153 PF04851 ResIII: Type III rest 99.6 2.2E-14 4.9E-19 143.7 12.3 153 418-585 3-183 (184)
154 KOG0333|consensus 99.5 9.7E-15 2.1E-19 157.9 8.4 176 88-273 355-555 (673)
155 KOG0328|consensus 99.5 7.7E-15 1.7E-19 147.4 5.6 141 108-273 148-304 (400)
156 PRK14873 primosome assembly pr 99.5 1.3E-12 2.8E-17 153.7 24.0 134 442-593 169-312 (665)
157 KOG0392|consensus 99.5 6.2E-13 1.4E-17 155.8 20.3 323 418-750 975-1454(1549)
158 KOG0348|consensus 99.5 7E-15 1.5E-19 159.2 1.3 148 90-251 247-432 (708)
159 KOG0326|consensus 99.4 2.5E-14 5.4E-19 145.9 2.6 138 107-270 205-357 (459)
160 KOG0389|consensus 99.4 3.2E-12 6.9E-17 144.7 18.8 340 414-766 396-905 (941)
161 TIGR02562 cas3_yersinia CRISPR 99.4 4.5E-12 9.8E-17 150.3 20.9 310 418-736 408-879 (1110)
162 smart00490 HELICc helicase sup 99.4 3.9E-13 8.4E-18 115.5 8.7 80 657-736 2-81 (82)
163 COG1199 DinG Rad3-related DNA 99.4 3.6E-11 7.8E-16 144.9 27.1 105 641-748 478-616 (654)
164 PRK11747 dinG ATP-dependent DN 99.4 1.2E-10 2.6E-15 139.7 31.0 101 641-745 533-670 (697)
165 PF08925 DUF1907: Domain of Un 99.4 1.1E-13 2.3E-18 142.4 3.6 178 142-320 1-215 (284)
166 KOG0327|consensus 99.4 2.8E-13 6.1E-18 142.6 6.5 159 89-274 128-302 (397)
167 KOG0339|consensus 99.4 8.6E-13 1.9E-17 142.2 9.0 153 98-275 339-508 (731)
168 PRK12901 secA preprotein trans 99.4 1.4E-10 2.9E-15 137.3 28.0 125 624-751 608-742 (1112)
169 PRK11634 ATP-dependent RNA hel 99.4 1.5E-12 3.3E-17 153.8 10.0 179 96-301 116-310 (629)
170 PRK11776 ATP-dependent RNA hel 99.4 2.4E-12 5.2E-17 148.5 11.2 183 91-301 109-307 (460)
171 KOG0347|consensus 99.4 4.5E-14 9.8E-19 153.5 -3.0 181 88-289 296-515 (731)
172 KOG0337|consensus 99.4 5.8E-13 1.3E-17 140.9 5.3 158 89-271 124-297 (529)
173 KOG0335|consensus 99.3 3.7E-12 7.9E-17 140.0 11.1 192 91-303 188-404 (482)
174 PRK04537 ATP-dependent RNA hel 99.3 5.7E-12 1.2E-16 148.0 9.1 187 90-302 119-323 (572)
175 TIGR00604 rad3 DNA repair heli 99.3 7.7E-10 1.7E-14 133.7 27.7 74 414-491 6-83 (705)
176 KOG0336|consensus 99.3 1.1E-11 2.4E-16 130.4 8.2 148 102-273 340-503 (629)
177 KOG0332|consensus 99.2 1.3E-11 2.8E-16 129.1 7.6 143 107-273 209-368 (477)
178 PTZ00110 helicase; Provisional 99.2 4.9E-11 1.1E-15 139.6 10.0 184 91-299 239-440 (545)
179 KOG0329|consensus 99.2 3.1E-12 6.6E-17 127.0 -0.2 144 89-256 145-295 (387)
180 PRK11192 ATP-dependent RNA hel 99.2 7.3E-11 1.6E-15 135.2 11.0 186 89-301 107-310 (434)
181 PRK10590 ATP-dependent RNA hel 99.2 5.6E-11 1.2E-15 136.7 9.9 185 90-301 110-310 (456)
182 PF02399 Herpes_ori_bp: Origin 99.2 6.9E-10 1.5E-14 129.1 17.7 291 434-750 50-388 (824)
183 PRK04837 ATP-dependent RNA hel 99.1 1.2E-10 2.6E-15 132.9 10.1 177 101-302 129-321 (423)
184 KOG4439|consensus 99.1 2.5E-09 5.4E-14 120.1 18.1 104 641-745 745-851 (901)
185 KOG1002|consensus 99.1 7.5E-09 1.6E-13 111.8 20.2 112 640-751 636-750 (791)
186 PF06862 DUF1253: Protein of u 99.1 3.8E-08 8.3E-13 109.4 26.0 292 467-758 36-423 (442)
187 KOG0334|consensus 99.1 1.4E-10 3.1E-15 136.2 7.1 178 90-293 473-669 (997)
188 PLN00206 DEAD-box ATP-dependen 99.1 2.9E-10 6.3E-15 132.6 9.6 146 102-273 243-406 (518)
189 COG0610 Type I site-specific r 99.1 2.8E-08 6.1E-13 122.5 26.6 296 434-748 274-651 (962)
190 COG0553 HepA Superfamily II DN 99.0 1.7E-08 3.6E-13 126.3 23.3 115 628-743 692-813 (866)
191 COG0653 SecA Preprotein transl 99.0 4.1E-08 9E-13 115.2 21.9 318 414-751 77-546 (822)
192 KOG4284|consensus 99.0 4.1E-10 9E-15 124.9 5.1 162 89-276 128-313 (980)
193 PF13959 DUF4217: Domain of un 99.0 1.1E-09 2.3E-14 89.4 6.2 62 777-838 1-63 (65)
194 PF07652 Flavi_DEAD: Flaviviru 99.0 6.8E-09 1.5E-13 97.0 11.8 137 432-589 3-141 (148)
195 PF00176 SNF2_N: SNF2 family N 98.9 1.7E-09 3.6E-14 117.4 8.8 160 422-587 1-175 (299)
196 smart00488 DEXDc2 DEAD-like he 98.9 8.4E-09 1.8E-13 111.0 13.6 76 414-491 5-84 (289)
197 smart00489 DEXDc3 DEAD-like he 98.9 8.4E-09 1.8E-13 111.0 13.6 76 414-491 5-84 (289)
198 KOG0388|consensus 98.9 1.6E-08 3.5E-13 113.2 16.0 108 641-749 1043-1153(1185)
199 PRK01297 ATP-dependent RNA hel 98.9 3E-09 6.5E-14 123.2 10.6 188 90-302 197-401 (475)
200 KOG4048|consensus 98.9 1.4E-09 3.1E-14 100.0 6.1 85 229-323 38-123 (201)
201 KOG0386|consensus 98.9 2.4E-08 5.1E-13 116.5 14.9 107 641-748 725-834 (1157)
202 TIGR02621 cas3_GSU0051 CRISPR- 98.7 2.7E-08 5.8E-13 118.5 10.1 158 89-275 119-310 (844)
203 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.5E-07 3.2E-12 98.8 14.2 131 414-556 74-210 (266)
204 KOG0952|consensus 98.7 2.4E-09 5.2E-14 125.2 -0.8 235 418-662 927-1173(1230)
205 KOG1015|consensus 98.7 7.4E-07 1.6E-11 103.1 18.2 114 631-745 1129-1270(1567)
206 PTZ00424 helicase 45; Provisio 98.6 1.8E-07 4E-12 106.1 12.9 175 100-301 141-332 (401)
207 KOG0921|consensus 98.6 1.5E-07 3.2E-12 108.4 11.4 318 422-752 382-776 (1282)
208 KOG0350|consensus 98.5 5.7E-08 1.2E-12 105.7 2.9 190 107-307 272-504 (620)
209 KOG2340|consensus 98.4 1.1E-05 2.5E-10 88.7 18.3 339 416-755 214-673 (698)
210 PRK09401 reverse gyrase; Revie 98.4 5.6E-07 1.2E-11 113.0 9.1 147 104-269 178-365 (1176)
211 COG3587 Restriction endonuclea 98.4 4.9E-05 1.1E-09 88.4 23.6 70 691-760 482-563 (985)
212 PRK15483 type III restriction- 98.3 5.2E-06 1.1E-10 100.1 15.0 143 435-586 61-240 (986)
213 KOG0344|consensus 98.3 2.5E-07 5.4E-12 103.2 2.1 134 122-272 273-425 (593)
214 PF02562 PhoH: PhoH-like prote 98.2 2.5E-06 5.4E-11 86.1 5.9 146 417-583 3-155 (205)
215 PF13307 Helicase_C_2: Helicas 98.0 2.1E-05 4.5E-10 77.7 8.7 105 641-749 8-148 (167)
216 PRK10536 hypothetical protein; 98.0 2.8E-05 6.1E-10 80.7 9.8 147 415-581 56-210 (262)
217 PF13086 AAA_11: AAA domain; P 98.0 2.4E-05 5.2E-10 81.3 9.6 73 418-490 1-75 (236)
218 KOG1016|consensus 97.9 0.00099 2.1E-08 76.5 21.2 121 642-763 719-865 (1387)
219 TIGR00596 rad1 DNA repair prot 97.9 0.00038 8.2E-09 84.3 19.3 67 519-586 8-74 (814)
220 TIGR01054 rgy reverse gyrase. 97.9 3E-05 6.6E-10 97.7 9.2 163 104-292 177-381 (1171)
221 PF13604 AAA_30: AAA domain; P 97.9 5.6E-05 1.2E-09 76.7 9.5 124 418-583 1-130 (196)
222 KOG0391|consensus 97.9 8.3E-05 1.8E-09 88.3 11.8 122 629-750 1261-1387(1958)
223 PHA02653 RNA helicase NPH-II; 97.8 7.2E-05 1.6E-09 89.0 10.0 93 174-272 319-434 (675)
224 PRK14701 reverse gyrase; Provi 97.8 7.7E-05 1.7E-09 96.3 10.9 144 105-268 178-366 (1638)
225 KOG0391|consensus 97.8 0.00011 2.4E-09 87.3 10.6 157 418-587 615-778 (1958)
226 PF13872 AAA_34: P-loop contai 97.8 0.00028 6.1E-09 74.6 12.4 162 418-591 37-227 (303)
227 PF12340 DUF3638: Protein of u 97.7 0.00091 2E-08 68.3 14.6 145 404-557 11-186 (229)
228 KOG1802|consensus 97.6 0.00038 8.2E-09 78.9 12.0 75 411-491 403-477 (935)
229 TIGR01970 DEAH_box_HrpB ATP-de 97.6 0.0002 4.3E-09 87.3 10.8 143 99-274 84-251 (819)
230 PRK11664 ATP-dependent RNA hel 97.6 0.00028 6E-09 86.2 10.5 143 99-274 87-254 (812)
231 PRK10875 recD exonuclease V su 97.5 0.0014 2.9E-08 77.5 15.3 144 419-583 153-301 (615)
232 PF09848 DUF2075: Uncharacteri 97.5 0.00032 6.9E-09 78.1 9.5 108 435-570 3-117 (352)
233 KOG1803|consensus 97.4 0.00062 1.3E-08 77.1 9.7 65 418-489 185-250 (649)
234 TIGR00376 DNA helicase, putati 97.4 0.0013 2.7E-08 78.6 12.8 67 417-490 156-223 (637)
235 TIGR01448 recD_rel helicase, p 97.4 0.002 4.4E-08 78.1 14.7 130 413-583 319-452 (720)
236 TIGR01447 recD exodeoxyribonuc 97.3 0.0019 4.1E-08 76.2 13.5 144 420-583 147-295 (586)
237 TIGR03817 DECH_helic helicase/ 97.3 0.00022 4.7E-09 86.8 5.0 182 100-304 124-347 (742)
238 PF13245 AAA_19: Part of AAA d 97.3 0.00085 1.8E-08 56.7 6.9 53 433-488 10-62 (76)
239 PRK11131 ATP-dependent RNA hel 97.1 0.002 4.3E-08 81.0 11.2 140 103-274 161-328 (1294)
240 PRK10689 transcription-repair 97.1 0.0016 3.4E-08 82.4 9.3 120 174-302 746-877 (1147)
241 COG1875 NYN ribonuclease and A 97.1 0.003 6.4E-08 67.8 9.8 144 414-582 224-386 (436)
242 TIGR01587 cas3_core CRISPR-ass 97.0 0.00075 1.6E-08 75.4 5.4 124 175-302 154-294 (358)
243 KOG0349|consensus 97.0 0.00046 9.9E-09 74.4 3.4 169 89-276 323-549 (725)
244 PF00580 UvrD-helicase: UvrD/R 96.9 0.0044 9.6E-08 67.4 10.3 104 419-533 1-104 (315)
245 PF13401 AAA_22: AAA domain; P 96.9 0.0047 1E-07 57.9 8.9 25 432-456 3-27 (131)
246 PRK13889 conjugal transfer rel 96.8 0.014 3E-07 72.4 14.2 127 413-583 342-470 (988)
247 TIGR02768 TraA_Ti Ti-type conj 96.8 0.016 3.4E-07 70.7 14.5 124 414-581 349-474 (744)
248 smart00492 HELICc3 helicase su 96.8 0.0075 1.6E-07 57.6 9.2 51 670-720 25-78 (141)
249 KOG1132|consensus 96.7 0.01 2.2E-07 70.1 11.0 44 414-458 18-65 (945)
250 smart00491 HELICc2 helicase su 96.6 0.0079 1.7E-07 57.5 8.5 66 655-720 4-79 (142)
251 PRK09751 putative ATP-dependen 96.6 0.0025 5.4E-08 81.5 6.1 84 100-205 94-187 (1490)
252 PRK04296 thymidine kinase; Pro 96.6 0.0028 6.1E-08 64.0 5.3 36 434-476 3-38 (190)
253 cd00268 DEADc DEAD-box helicas 96.5 0.0015 3.3E-08 66.5 3.0 79 104-205 118-202 (203)
254 PRK08181 transposase; Validate 96.5 0.034 7.3E-07 59.2 13.0 117 420-585 89-210 (269)
255 TIGR00580 mfd transcription-re 96.5 0.015 3.3E-07 72.1 11.3 121 174-303 597-729 (926)
256 KOG1805|consensus 96.4 0.013 2.7E-07 70.0 9.5 129 417-557 668-810 (1100)
257 PRK06526 transposase; Provisio 96.3 0.014 2.9E-07 61.8 8.3 31 428-458 93-123 (254)
258 cd00009 AAA The AAA+ (ATPases 96.3 0.034 7.4E-07 52.3 10.4 18 433-450 19-36 (151)
259 smart00382 AAA ATPases associa 96.2 0.01 2.3E-07 55.4 6.4 41 433-480 2-42 (148)
260 PRK12723 flagellar biosynthesi 96.1 0.055 1.2E-06 60.5 12.6 123 433-587 174-300 (388)
261 PLN03137 ATP-dependent DNA hel 96.1 0.017 3.7E-07 71.4 8.9 148 104-273 551-718 (1195)
262 PRK13826 Dtr system oriT relax 96.0 0.088 1.9E-06 65.9 14.5 136 404-583 368-505 (1102)
263 PF05970 PIF1: PIF1-like helic 95.9 0.015 3.2E-07 65.0 6.9 60 418-484 1-66 (364)
264 PHA02533 17 large terminase pr 95.9 0.057 1.2E-06 63.1 11.7 148 418-583 59-209 (534)
265 TIGR01967 DEAH_box_HrpA ATP-de 95.8 0.053 1.2E-06 68.7 11.8 159 83-274 125-321 (1283)
266 PRK14722 flhF flagellar biosyn 95.8 0.08 1.7E-06 58.8 11.7 122 433-588 137-261 (374)
267 KOG1001|consensus 95.7 0.041 9E-07 65.5 9.5 96 644-740 541-638 (674)
268 PRK14974 cell division protein 95.6 0.14 3E-06 56.3 12.8 130 434-594 141-274 (336)
269 COG3421 Uncharacterized protei 95.6 0.012 2.7E-07 66.5 4.7 142 438-586 2-167 (812)
270 PF00448 SRP54: SRP54-type pro 95.6 0.17 3.8E-06 51.2 12.5 126 435-590 3-131 (196)
271 PRK07952 DNA replication prote 95.4 0.17 3.7E-06 53.0 12.1 43 542-584 161-205 (244)
272 PRK12377 putative replication 95.4 0.15 3.2E-06 53.7 11.5 45 433-485 101-145 (248)
273 KOG0989|consensus 95.4 0.047 1E-06 57.6 7.5 53 540-593 126-178 (346)
274 PRK08727 hypothetical protein; 95.3 0.071 1.5E-06 55.7 8.9 44 542-585 92-137 (233)
275 TIGR02760 TraI_TIGR conjugativ 95.3 0.76 1.6E-05 62.0 20.2 209 418-664 429-648 (1960)
276 cd01120 RecA-like_NTPases RecA 95.2 0.19 4.1E-06 48.5 11.1 39 436-481 2-40 (165)
277 PRK11889 flhF flagellar biosyn 95.2 0.3 6.6E-06 54.2 13.5 127 434-594 242-373 (436)
278 TIGR00614 recQ_fam ATP-depende 95.2 0.14 3E-06 59.4 11.8 90 176-273 162-264 (470)
279 PRK05642 DNA replication initi 95.1 0.089 1.9E-06 55.0 8.8 45 542-586 96-141 (234)
280 TIGR01389 recQ ATP-dependent D 95.1 0.058 1.3E-06 64.5 8.3 116 177-301 163-289 (591)
281 TIGR03158 cas3_cyano CRISPR-as 95.0 0.083 1.8E-06 58.9 8.7 96 176-274 181-313 (357)
282 PRK00254 ski2-like helicase; P 94.9 0.031 6.7E-07 68.4 5.6 74 102-199 111-190 (720)
283 PRK08769 DNA polymerase III su 94.9 0.13 2.7E-06 56.2 9.6 145 416-586 2-155 (319)
284 PF13871 Helicase_C_4: Helicas 94.8 0.11 2.4E-06 55.1 8.4 74 683-756 52-136 (278)
285 PRK12898 secA preprotein trans 94.8 0.048 1E-06 64.5 6.4 87 181-272 413-510 (656)
286 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.094 2E-06 54.2 8.0 23 432-454 37-59 (226)
287 PRK05703 flhF flagellar biosyn 94.8 0.48 1E-05 54.0 14.2 122 433-588 221-346 (424)
288 PF14617 CMS1: U3-containing 9 94.7 0.079 1.7E-06 55.4 7.1 87 466-554 124-212 (252)
289 PRK07994 DNA polymerase III su 94.7 0.2 4.3E-06 59.6 11.1 38 542-580 118-155 (647)
290 PRK05707 DNA polymerase III su 94.6 0.19 4.1E-06 55.3 10.0 41 418-458 3-47 (328)
291 PRK11057 ATP-dependent DNA hel 94.5 0.12 2.7E-06 61.8 9.2 114 176-299 174-299 (607)
292 PRK14958 DNA polymerase III su 94.5 0.21 4.5E-06 58.3 10.6 39 542-581 118-156 (509)
293 PRK08116 hypothetical protein; 94.4 0.36 7.8E-06 51.5 11.6 43 434-484 115-157 (268)
294 KOG0298|consensus 94.4 0.083 1.8E-06 65.0 7.2 156 433-593 374-559 (1394)
295 PLN03025 replication factor C 94.4 0.39 8.5E-06 52.7 12.2 38 543-581 99-136 (319)
296 PF03354 Terminase_1: Phage Te 94.4 0.18 3.9E-06 58.6 9.9 71 421-494 1-80 (477)
297 COG1484 DnaC DNA replication p 94.4 0.22 4.7E-06 52.7 9.6 50 432-489 104-153 (254)
298 COG2256 MGS1 ATPase related to 94.3 0.14 3E-06 56.1 8.1 47 434-490 49-95 (436)
299 PRK11054 helD DNA helicase IV; 94.3 0.15 3.2E-06 61.5 9.2 72 417-493 195-266 (684)
300 PRK06893 DNA replication initi 94.2 0.13 2.8E-06 53.6 7.4 45 542-586 90-136 (229)
301 PRK07003 DNA polymerase III su 94.2 0.22 4.7E-06 59.6 9.9 41 542-583 118-158 (830)
302 PRK00149 dnaA chromosomal repl 94.1 0.21 4.6E-06 57.6 9.8 45 434-484 149-193 (450)
303 PRK02362 ski2-like helicase; P 94.1 0.07 1.5E-06 65.5 5.9 73 103-195 111-189 (737)
304 PHA02544 44 clamp loader, smal 94.0 0.25 5.3E-06 54.1 9.7 39 543-581 100-138 (316)
305 PF13177 DNA_pol3_delta2: DNA 94.0 0.27 5.9E-06 48.1 8.9 49 542-591 101-149 (162)
306 PRK14712 conjugal transfer nic 94.0 0.36 7.9E-06 62.6 12.1 62 418-484 835-900 (1623)
307 PF05621 TniB: Bacterial TniB 94.0 0.29 6.3E-06 52.3 9.6 119 434-580 62-186 (302)
308 cd01124 KaiC KaiC is a circadi 94.0 0.27 5.9E-06 49.0 9.1 48 436-491 2-49 (187)
309 PRK12323 DNA polymerase III su 94.0 0.15 3.2E-06 60.0 7.9 44 542-586 123-166 (700)
310 TIGR00362 DnaA chromosomal rep 93.9 0.26 5.7E-06 56.0 9.9 37 434-475 137-173 (405)
311 PRK08084 DNA replication initi 93.9 0.19 4.1E-06 52.5 8.0 41 544-585 98-141 (235)
312 PRK06921 hypothetical protein; 93.9 0.5 1.1E-05 50.4 11.2 44 433-483 117-160 (266)
313 PRK06835 DNA replication prote 93.8 0.59 1.3E-05 51.3 12.0 45 432-484 182-226 (329)
314 PRK14087 dnaA chromosomal repl 93.8 0.39 8.5E-06 55.2 10.9 107 434-585 142-250 (450)
315 TIGR01547 phage_term_2 phage t 93.7 0.22 4.8E-06 56.4 8.8 145 435-596 3-152 (396)
316 PTZ00112 origin recognition co 93.7 0.6 1.3E-05 56.5 12.2 22 436-458 784-805 (1164)
317 PF05876 Terminase_GpA: Phage 93.5 0.12 2.7E-06 60.9 6.4 126 418-557 16-148 (557)
318 PRK14961 DNA polymerase III su 93.4 0.46 1E-05 53.1 10.6 39 542-581 118-156 (363)
319 PRK09183 transposase/IS protei 93.4 0.64 1.4E-05 49.3 11.1 46 430-483 99-144 (259)
320 PF00004 AAA: ATPase family as 93.4 0.56 1.2E-05 43.5 9.6 16 436-451 1-16 (132)
321 COG3973 Superfamily I DNA and 93.4 0.33 7.1E-06 55.8 9.0 72 420-493 214-285 (747)
322 PRK10919 ATP-dependent DNA hel 93.3 0.19 4.2E-06 60.8 7.7 71 418-493 2-72 (672)
323 PRK14956 DNA polymerase III su 93.3 0.39 8.5E-06 54.9 9.6 22 435-456 42-63 (484)
324 cd01122 GP4d_helicase GP4d_hel 93.2 0.26 5.7E-06 52.6 8.0 54 430-490 27-80 (271)
325 PRK10917 ATP-dependent DNA hel 93.2 0.35 7.6E-06 58.8 9.8 79 641-719 309-392 (681)
326 PRK13709 conjugal transfer nic 93.2 0.68 1.5E-05 61.0 12.8 64 418-484 967-1032(1747)
327 PHA03368 DNA packaging termina 93.2 0.75 1.6E-05 54.1 11.7 151 414-587 239-393 (738)
328 PRK14949 DNA polymerase III su 93.1 0.56 1.2E-05 57.2 11.1 38 542-580 118-155 (944)
329 PRK06871 DNA polymerase III su 93.1 0.5 1.1E-05 51.6 9.9 40 419-458 3-49 (325)
330 PF00308 Bac_DnaA: Bacterial d 93.1 0.49 1.1E-05 48.9 9.4 46 542-587 96-143 (219)
331 PF05496 RuvB_N: Holliday junc 93.1 0.26 5.7E-06 50.4 7.0 22 434-455 51-72 (233)
332 PRK14960 DNA polymerase III su 93.0 0.64 1.4E-05 55.0 11.1 39 542-581 117-155 (702)
333 PRK08903 DnaA regulatory inact 93.0 0.36 7.7E-06 50.1 8.4 42 543-585 90-132 (227)
334 PF13173 AAA_14: AAA domain 93.0 0.75 1.6E-05 43.0 9.8 38 543-583 61-98 (128)
335 TIGR01074 rep ATP-dependent DN 93.0 0.4 8.6E-06 58.3 10.0 70 419-493 2-71 (664)
336 PRK12402 replication factor C 92.9 0.6 1.3E-05 51.5 10.5 39 542-581 124-162 (337)
337 PRK14964 DNA polymerase III su 92.9 0.61 1.3E-05 53.8 10.6 39 542-581 115-153 (491)
338 PRK08691 DNA polymerase III su 92.9 0.77 1.7E-05 54.7 11.5 39 542-581 118-156 (709)
339 PRK14969 DNA polymerase III su 92.8 0.96 2.1E-05 53.1 12.3 39 542-581 118-156 (527)
340 PRK13767 ATP-dependent helicas 92.8 0.12 2.5E-06 64.6 5.1 173 101-301 142-355 (876)
341 PRK14088 dnaA chromosomal repl 92.8 0.82 1.8E-05 52.5 11.5 38 434-476 131-168 (440)
342 COG1110 Reverse gyrase [DNA re 92.7 0.27 5.9E-06 59.5 7.5 102 630-731 113-230 (1187)
343 PRK06964 DNA polymerase III su 92.7 0.56 1.2E-05 51.7 9.5 40 419-458 2-46 (342)
344 PRK14952 DNA polymerase III su 92.6 0.62 1.3E-05 55.1 10.4 39 542-581 117-155 (584)
345 PRK07764 DNA polymerase III su 92.6 0.53 1.1E-05 57.9 10.2 39 542-581 119-157 (824)
346 PRK05580 primosome assembly pr 92.5 0.61 1.3E-05 56.6 10.5 78 641-719 189-267 (679)
347 TIGR01075 uvrD DNA helicase II 92.5 0.26 5.6E-06 60.4 7.4 72 417-493 3-74 (715)
348 PHA03333 putative ATPase subun 92.5 2.4 5.2E-05 50.2 14.6 71 418-494 169-242 (752)
349 PRK00771 signal recognition pa 92.5 1.4 3.1E-05 50.2 12.7 127 434-593 96-226 (437)
350 TIGR02785 addA_Gpos recombinat 92.5 0.59 1.3E-05 60.6 10.9 125 418-554 1-126 (1232)
351 PRK14965 DNA polymerase III su 92.4 0.7 1.5E-05 54.9 10.6 39 542-581 118-156 (576)
352 PRK06645 DNA polymerase III su 92.4 0.64 1.4E-05 54.0 10.0 24 434-457 44-67 (507)
353 TIGR00595 priA primosomal prot 92.4 0.54 1.2E-05 54.9 9.5 77 641-718 24-101 (505)
354 PRK11773 uvrD DNA-dependent he 92.3 0.29 6.4E-06 59.9 7.5 72 417-493 8-79 (721)
355 PTZ00293 thymidine kinase; Pro 92.2 0.61 1.3E-05 47.5 8.5 39 433-478 4-42 (211)
356 TIGR03015 pepcterm_ATPase puta 92.2 0.99 2.2E-05 47.9 10.6 34 418-451 23-61 (269)
357 KOG2028|consensus 92.2 0.48 1E-05 51.2 7.8 108 434-596 163-270 (554)
358 cd00561 CobA_CobO_BtuR ATP:cor 92.1 0.64 1.4E-05 45.2 8.1 52 542-593 94-147 (159)
359 KOG1133|consensus 92.1 0.2 4.4E-06 58.1 5.2 46 414-460 12-61 (821)
360 PRK12727 flagellar biosynthesi 92.0 2.2 4.7E-05 49.5 13.4 120 432-586 349-471 (559)
361 PHA02558 uvsW UvsW helicase; P 92.0 0.28 6.1E-06 57.4 6.6 45 230-274 328-383 (501)
362 COG1435 Tdk Thymidine kinase [ 91.9 0.89 1.9E-05 45.3 8.9 93 433-557 4-96 (201)
363 PRK06090 DNA polymerase III su 91.8 0.88 1.9E-05 49.7 9.6 41 418-458 3-50 (319)
364 PRK14086 dnaA chromosomal repl 91.8 0.44 9.5E-06 56.1 7.7 45 542-586 376-422 (617)
365 PRK09111 DNA polymerase III su 91.8 0.9 1.9E-05 54.0 10.4 40 541-581 130-169 (598)
366 PRK12422 chromosomal replicati 91.7 0.67 1.5E-05 53.1 9.1 47 542-588 201-249 (445)
367 KOG0701|consensus 91.7 0.1 2.2E-06 66.8 2.5 99 638-736 288-398 (1606)
368 PRK05563 DNA polymerase III su 91.6 1.5 3.3E-05 51.9 12.2 23 434-456 39-61 (559)
369 PRK08699 DNA polymerase III su 91.6 1.2 2.7E-05 48.8 10.6 40 419-458 2-46 (325)
370 TIGR02881 spore_V_K stage V sp 91.6 0.57 1.2E-05 49.8 7.9 21 434-454 43-63 (261)
371 PRK00411 cdc6 cell division co 91.4 1.7 3.7E-05 49.1 12.0 17 434-450 56-72 (394)
372 PF05127 Helicase_RecD: Helica 91.4 0.064 1.4E-06 53.0 0.3 125 437-586 1-125 (177)
373 COG1419 FlhF Flagellar GTP-bin 91.4 0.63 1.4E-05 51.6 7.9 122 433-587 203-326 (407)
374 PRK14957 DNA polymerase III su 91.3 1.2 2.6E-05 52.2 10.7 39 542-581 118-156 (546)
375 COG1444 Predicted P-loop ATPas 91.3 1.6 3.5E-05 52.3 11.8 142 419-586 212-358 (758)
376 TIGR00643 recG ATP-dependent D 91.3 0.61 1.3E-05 56.2 8.6 79 641-719 283-366 (630)
377 PRK06731 flhF flagellar biosyn 91.2 5 0.00011 42.8 14.4 128 432-594 74-207 (270)
378 TIGR02928 orc1/cdc6 family rep 91.2 1.3 2.8E-05 49.5 10.7 24 434-458 41-64 (365)
379 PRK05986 cob(I)alamin adenolsy 91.2 0.45 9.8E-06 47.6 6.1 141 432-594 21-168 (191)
380 PRK14873 primosome assembly pr 91.1 1.1 2.4E-05 53.9 10.4 92 627-719 171-266 (665)
381 PRK14951 DNA polymerase III su 91.1 0.72 1.6E-05 54.8 8.7 39 542-581 123-161 (618)
382 TIGR00064 ftsY signal recognit 91.0 3.1 6.8E-05 44.4 12.8 123 434-587 73-205 (272)
383 cd00984 DnaB_C DnaB helicase C 90.9 0.72 1.6E-05 48.2 7.8 38 432-475 12-49 (242)
384 PRK14723 flhF flagellar biosyn 90.8 1.3 2.8E-05 53.6 10.5 120 433-586 185-307 (767)
385 PRK00440 rfc replication facto 90.7 2.6 5.7E-05 45.9 12.3 38 543-581 102-139 (319)
386 PRK04195 replication factor C 90.5 1.3 2.9E-05 51.5 10.2 19 433-451 39-57 (482)
387 PRK14955 DNA polymerase III su 90.5 1.2 2.6E-05 50.5 9.5 23 435-457 40-62 (397)
388 COG0470 HolB ATPase involved i 90.4 0.6 1.3E-05 51.0 7.0 40 542-582 108-147 (325)
389 TIGR01425 SRP54_euk signal rec 90.4 3.5 7.5E-05 46.8 12.9 129 435-593 102-233 (429)
390 PRK13342 recombination factor 90.4 0.95 2.1E-05 51.6 8.8 20 434-453 37-56 (413)
391 PF06745 KaiC: KaiC; InterPro 90.4 0.54 1.2E-05 48.7 6.2 134 432-584 18-160 (226)
392 PRK08533 flagellar accessory p 90.4 1.7 3.6E-05 45.3 9.8 52 431-490 22-73 (230)
393 PF01695 IstB_IS21: IstB-like 90.4 0.38 8.3E-06 47.9 4.8 46 431-484 45-90 (178)
394 PRK12726 flagellar biosynthesi 90.4 1.6 3.5E-05 48.4 9.9 120 433-585 206-328 (407)
395 KOG0991|consensus 90.3 0.55 1.2E-05 47.7 5.8 41 542-583 112-152 (333)
396 TIGR02760 TraI_TIGR conjugativ 90.3 0.96 2.1E-05 61.0 9.8 61 418-484 1019-1084(1960)
397 PRK14954 DNA polymerase III su 90.3 1.2 2.5E-05 53.2 9.5 24 434-457 39-62 (620)
398 PRK14963 DNA polymerase III su 90.3 1.9 4.1E-05 50.3 11.1 21 435-455 38-58 (504)
399 COG1200 RecG RecG-like helicas 90.2 1.3 2.8E-05 52.0 9.4 91 628-718 296-392 (677)
400 TIGR03881 KaiC_arch_4 KaiC dom 90.2 2.2 4.7E-05 44.2 10.5 48 432-487 19-66 (229)
401 PRK13894 conjugal transfer ATP 90.1 0.72 1.6E-05 50.4 7.1 61 413-480 129-190 (319)
402 PRK07993 DNA polymerase III su 90.1 1.2 2.7E-05 49.0 9.0 41 418-458 2-49 (334)
403 KOG0738|consensus 90.1 0.75 1.6E-05 50.3 6.9 17 434-450 246-262 (491)
404 PRK14950 DNA polymerase III su 90.1 2.1 4.5E-05 51.1 11.5 21 434-454 39-59 (585)
405 COG1202 Superfamily II helicas 90.0 1.5 3.3E-05 50.1 9.4 104 176-290 372-493 (830)
406 PRK13341 recombination factor 90.0 1.2 2.6E-05 54.1 9.5 40 543-587 109-148 (725)
407 PRK12724 flagellar biosynthesi 90.0 5.5 0.00012 45.0 13.8 125 433-593 223-354 (432)
408 TIGR01073 pcrA ATP-dependent D 89.7 0.7 1.5E-05 56.8 7.4 72 417-493 3-74 (726)
409 PRK07940 DNA polymerase III su 89.6 1.7 3.7E-05 49.0 9.7 41 542-583 116-156 (394)
410 KOG0729|consensus 89.5 5.8 0.00013 41.3 12.4 40 434-484 212-251 (435)
411 PRK07471 DNA polymerase III su 89.5 2 4.3E-05 48.0 10.1 43 542-585 140-182 (365)
412 COG4626 Phage terminase-like p 89.5 2.4 5.3E-05 48.8 10.8 147 418-583 61-224 (546)
413 COG0466 Lon ATP-dependent Lon 89.5 2.4 5.1E-05 50.2 10.8 95 433-571 350-445 (782)
414 PRK11331 5-methylcytosine-spec 89.4 0.79 1.7E-05 51.9 6.8 34 419-452 180-213 (459)
415 PF06862 DUF1253: Protein of u 89.3 1.1 2.4E-05 50.8 7.9 156 104-267 130-332 (442)
416 PRK14959 DNA polymerase III su 89.3 2.3 5E-05 50.4 10.8 24 434-457 39-62 (624)
417 KOG1131|consensus 89.3 2.1 4.6E-05 48.4 9.7 77 414-493 12-92 (755)
418 PRK14962 DNA polymerase III su 89.2 2.6 5.5E-05 48.8 10.9 21 435-455 38-58 (472)
419 TIGR00708 cobA cob(I)alamin ad 89.1 1.6 3.4E-05 43.1 7.8 135 435-593 7-149 (173)
420 PRK08939 primosomal protein Dn 88.7 2.2 4.7E-05 46.5 9.5 24 433-456 156-179 (306)
421 PRK13833 conjugal transfer pro 88.7 1.2 2.6E-05 48.7 7.4 58 419-481 129-187 (323)
422 COG1197 Mfd Transcription-repa 88.7 1.5 3.3E-05 54.5 9.0 81 636-716 637-722 (1139)
423 PF03796 DnaB_C: DnaB-like hel 88.7 2.4 5.2E-05 44.9 9.7 144 432-585 18-181 (259)
424 PRK14721 flhF flagellar biosyn 88.6 3.1 6.6E-05 47.2 10.8 24 432-455 190-213 (420)
425 PRK07133 DNA polymerase III su 88.6 2.4 5.1E-05 51.1 10.4 22 435-456 42-63 (725)
426 PRK05896 DNA polymerase III su 88.6 1.9 4.2E-05 50.8 9.4 24 434-457 39-62 (605)
427 COG2804 PulE Type II secretory 88.5 0.68 1.5E-05 52.7 5.5 38 420-458 243-282 (500)
428 COG4962 CpaF Flp pilus assembl 88.5 0.78 1.7E-05 49.7 5.7 61 415-483 154-215 (355)
429 TIGR02782 TrbB_P P-type conjug 88.5 1.4 3.1E-05 47.7 7.9 58 419-481 117-175 (299)
430 PRK10867 signal recognition pa 88.4 5.7 0.00012 45.3 12.9 43 435-483 102-146 (433)
431 PRK06995 flhF flagellar biosyn 88.3 6 0.00013 45.7 13.0 25 433-457 256-280 (484)
432 PRK01172 ski2-like helicase; P 88.3 0.29 6.2E-06 59.6 2.6 74 103-196 109-188 (674)
433 PRK11823 DNA repair protein Ra 88.2 2.6 5.6E-05 48.5 10.1 50 433-490 80-129 (446)
434 CHL00181 cbbX CbbX; Provisiona 88.2 2.4 5.2E-05 45.7 9.4 23 433-455 59-81 (287)
435 PRK13851 type IV secretion sys 88.0 0.6 1.3E-05 51.5 4.6 44 430-481 159-202 (344)
436 PRK08451 DNA polymerase III su 88.0 3.5 7.5E-05 48.2 11.0 39 542-581 116-154 (535)
437 TIGR00959 ffh signal recogniti 87.9 7.6 0.00017 44.2 13.4 23 435-457 101-123 (428)
438 COG0593 DnaA ATPase involved i 87.8 2 4.3E-05 48.2 8.5 45 543-587 175-221 (408)
439 PRK11034 clpA ATP-dependent Cl 87.6 3 6.6E-05 51.0 10.7 22 433-454 207-228 (758)
440 TIGR02688 conserved hypothetic 87.4 2.8 6.1E-05 47.1 9.3 25 428-452 204-228 (449)
441 cd03115 SRP The signal recogni 87.4 9.4 0.0002 37.5 12.5 21 436-456 3-23 (173)
442 cd01130 VirB11-like_ATPase Typ 87.4 1.1 2.5E-05 44.8 5.9 33 418-450 9-42 (186)
443 COG2805 PilT Tfp pilus assembl 87.3 1.4 3.1E-05 46.7 6.6 25 435-460 127-151 (353)
444 COG2909 MalT ATP-dependent tra 87.1 3.3 7.2E-05 49.9 10.1 44 543-586 129-172 (894)
445 PRK14948 DNA polymerase III su 87.0 3.2 7E-05 49.7 10.3 24 434-457 39-62 (620)
446 TIGR03499 FlhF flagellar biosy 87.0 1.3 2.8E-05 47.6 6.4 25 433-457 194-218 (282)
447 TIGR03600 phage_DnaB phage rep 87.0 4.9 0.00011 45.9 11.5 116 432-557 193-319 (421)
448 PRK06904 replicative DNA helic 86.9 7.2 0.00016 45.2 12.8 117 432-558 220-349 (472)
449 PF05729 NACHT: NACHT domain 86.9 4.1 8.9E-05 39.2 9.5 20 435-454 2-21 (166)
450 COG1198 PriA Primosomal protei 86.9 1.5 3.3E-05 52.8 7.4 92 624-716 225-319 (730)
451 TIGR03878 thermo_KaiC_2 KaiC d 86.9 5.2 0.00011 42.4 10.9 37 432-475 35-71 (259)
452 COG2109 BtuR ATP:corrinoid ade 86.8 2.9 6.4E-05 41.4 8.0 142 436-595 31-176 (198)
453 cd01121 Sms Sms (bacterial rad 86.7 5 0.00011 44.9 11.1 50 433-490 82-131 (372)
454 cd01129 PulE-GspE PulE/GspE Th 86.4 1.5 3.2E-05 46.7 6.4 59 411-479 59-119 (264)
455 KOG0739|consensus 86.3 6.7 0.00015 41.6 10.7 112 428-590 156-283 (439)
456 COG1474 CDC6 Cdc6-related prot 86.1 6.3 0.00014 44.0 11.4 25 434-459 43-67 (366)
457 COG1222 RPT1 ATP-dependent 26S 86.0 4.4 9.4E-05 44.2 9.5 53 394-450 148-202 (406)
458 PRK14953 DNA polymerase III su 85.9 4.6 0.0001 46.9 10.5 22 435-456 40-61 (486)
459 PRK13900 type IV secretion sys 85.8 0.81 1.8E-05 50.4 4.2 43 430-480 157-199 (332)
460 KOG0741|consensus 85.8 4.1 8.9E-05 46.4 9.4 44 542-585 597-650 (744)
461 PF00270 DEAD: DEAD/DEAH box h 85.7 0.11 2.5E-06 50.7 -2.4 69 105-193 95-169 (169)
462 PRK07399 DNA polymerase III su 85.6 5.7 0.00012 43.4 10.6 56 525-584 108-163 (314)
463 COG1223 Predicted ATPase (AAA+ 85.5 3.4 7.5E-05 42.9 8.0 42 433-485 151-192 (368)
464 PHA00350 putative assembly pro 85.4 4.6 0.0001 45.3 9.8 24 435-458 3-27 (399)
465 COG1219 ClpX ATP-dependent pro 85.3 0.51 1.1E-05 50.3 2.1 23 432-454 96-118 (408)
466 PF01443 Viral_helicase1: Vira 85.3 0.99 2.1E-05 46.8 4.4 14 436-449 1-14 (234)
467 PRK09112 DNA polymerase III su 85.2 3.6 7.8E-05 45.7 8.9 41 542-583 140-180 (351)
468 PRK14971 DNA polymerase III su 85.2 6.8 0.00015 47.0 11.8 40 541-581 119-158 (614)
469 PF00265 TK: Thymidine kinase; 85.2 0.89 1.9E-05 45.2 3.7 37 436-479 4-40 (176)
470 PRK06647 DNA polymerase III su 85.1 3.6 7.9E-05 48.6 9.4 22 435-456 40-61 (563)
471 TIGR00678 holB DNA polymerase 85.1 4.7 0.0001 40.3 9.1 23 434-456 15-37 (188)
472 KOG1513|consensus 85.0 0.69 1.5E-05 54.4 3.1 164 419-592 265-462 (1300)
473 PF03237 Terminase_6: Terminas 84.9 4.1 9E-05 45.0 9.5 129 437-585 1-138 (384)
474 PRK07004 replicative DNA helic 84.9 5.4 0.00012 46.1 10.5 141 432-582 212-372 (460)
475 PF02572 CobA_CobO_BtuR: ATP:c 84.7 4.7 0.0001 39.8 8.4 140 436-593 6-148 (172)
476 PRK04841 transcriptional regul 84.6 5.7 0.00012 50.2 11.6 42 545-586 123-164 (903)
477 PRK10416 signal recognition pa 84.5 16 0.00035 40.0 13.4 125 433-587 114-247 (318)
478 TIGR02639 ClpA ATP-dependent C 84.5 4.2 9.1E-05 50.0 9.9 23 434-456 204-226 (731)
479 PRK10865 protein disaggregatio 84.3 5 0.00011 50.1 10.5 23 434-456 200-222 (857)
480 TIGR03346 chaperone_ClpB ATP-d 84.1 6 0.00013 49.5 11.1 21 434-454 195-215 (852)
481 KOG1133|consensus 84.1 9.6 0.00021 44.9 11.6 102 641-747 628-776 (821)
482 TIGR03877 thermo_KaiC_1 KaiC d 84.0 1.3 2.8E-05 46.3 4.5 51 433-491 21-71 (237)
483 TIGR03819 heli_sec_ATPase heli 83.5 2.1 4.6E-05 47.3 6.1 60 411-480 157-217 (340)
484 PRK08506 replicative DNA helic 83.4 8.9 0.00019 44.5 11.4 115 432-557 191-316 (472)
485 PRK10436 hypothetical protein; 82.9 2.2 4.7E-05 49.1 6.1 38 420-458 203-242 (462)
486 PRK08760 replicative DNA helic 82.8 6.3 0.00014 45.7 9.9 114 432-556 228-352 (476)
487 PRK06305 DNA polymerase III su 82.5 6.3 0.00014 45.4 9.7 24 434-457 40-63 (451)
488 PRK08840 replicative DNA helic 82.3 16 0.00035 42.2 12.9 116 431-556 215-342 (464)
489 PHA00012 I assembly protein 82.1 15 0.00032 40.0 11.3 45 542-586 80-130 (361)
490 TIGR00767 rho transcription te 82.1 6.3 0.00014 44.2 9.0 21 430-450 165-185 (415)
491 PF02534 T4SS-DNA_transf: Type 81.6 1.6 3.4E-05 50.7 4.4 49 434-491 45-93 (469)
492 PRK05973 replicative DNA helic 81.5 2.1 4.6E-05 44.6 4.9 55 429-491 60-114 (237)
493 PRK03992 proteasome-activating 81.5 4.1 8.8E-05 46.0 7.6 18 433-450 165-182 (389)
494 TIGR02397 dnaX_nterm DNA polym 81.5 5.8 0.00013 44.0 8.8 20 434-453 37-56 (355)
495 cd01126 TraG_VirD4 The TraG/Tr 81.1 1.4 3E-05 49.7 3.7 47 435-490 1-47 (384)
496 PRK05636 replicative DNA helic 81.0 10 0.00022 44.4 10.7 111 433-557 265-389 (505)
497 PF12846 AAA_10: AAA-like doma 80.9 1.6 3.5E-05 46.8 4.0 40 434-480 2-41 (304)
498 PRK09165 replicative DNA helic 80.9 13 0.00028 43.4 11.6 119 433-556 217-354 (497)
499 COG1111 MPH1 ERCC4-like helica 80.5 28 0.0006 39.8 13.2 96 634-735 51-158 (542)
500 TIGR03345 VI_ClpV1 type VI sec 80.5 5.4 0.00012 49.7 8.8 111 423-581 571-716 (852)
No 1
>KOG0342|consensus
Probab=100.00 E-value=1.8e-73 Score=605.06 Aligned_cols=444 Identities=63% Similarity=1.033 Sum_probs=428.3
Q ss_pred CCCCccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCC
Q psy12983 389 SILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNG 468 (838)
Q Consensus 389 ~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 468 (838)
+......|+... |++..++++.++||.++|++|+.+|+.++.|+|+++.|-||+|||++|++|+++++.+.+..+.++
T Consensus 77 s~~~~~~f~~~~--LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~ 154 (543)
T KOG0342|consen 77 SITTTFRFEEGS--LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNG 154 (543)
T ss_pred chhhhhHhhccc--cCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCC
Confidence 344556677776 999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEE
Q psy12983 469 TGIIIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCL 547 (838)
Q Consensus 469 ~~vlvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lv 547 (838)
..++|++|||+||.|++.+.++++..+ ++.+..+.||++...+...+.++++|+|+|||+|++|+.+...+.+++++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 999999999999999999999999998 8999999999999999999999999999999999999999998888999999
Q ss_pred EEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch
Q psy12983 548 IIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE 627 (838)
Q Consensus 548 ViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 627 (838)
|+||||++++.||...+..|++.+|+.+|.++||||.+..++.++...++.++.++.+.+.....+...+.|.|++++.+
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~ 314 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD 314 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCC-CeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 628 KRFLLLFTFLKKNRK-KKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 628 ~k~~~l~~~l~~~~~-~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
.++..++.+++++.. .++||||+|+..+..+++.|+...++|..+||++++..|..+..+|++.+..||||||+++||+
T Consensus 315 ~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 999999999999866 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcCCCCccccccchhhHHHHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLI 786 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 786 (838)
|+|+|++||+||+|.++.+|+||+||+||. |..|.+++++.|.|..|+++|+ .+|+++.++.|....+++..+++++
T Consensus 395 D~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~-gk~G~alL~l~p~El~Flr~LK--~lpl~~~e~~~~~~~~v~~~~~~li 471 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDPEQYIHRVGRTARE-GKEGKALLLLAPWELGFLRYLK--KLPLEEFEFPPLKPEDVQSQLEKLI 471 (543)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHhcccccc-CCCceEEEEeChhHHHHHHHHh--hCCCcccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999996 8999999999999999999999 6899999999999999999999999
Q ss_pred hhcHHHHHhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCcccccc
Q psy12983 787 SKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTRI 837 (838)
Q Consensus 787 ~~~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~~~ 837 (838)
+++++++..+.+||++|+++|++|+++.+|+.+.+||.+++.|||+...|-
T Consensus 472 ~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~~~~s~gf~~pp~ 522 (543)
T KOG0342|consen 472 SKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAAVAKSFGFSVPPA 522 (543)
T ss_pred HHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999999999999998764
No 2
>KOG0345|consensus
Probab=100.00 E-value=3.2e-69 Score=568.18 Aligned_cols=441 Identities=39% Similarity=0.679 Sum_probs=401.2
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCC-CcEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRN-GTGI 471 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~-~~~v 471 (838)
...|+++..+|++|+++++..+||..+||+|..+||.++.++|+++.++||||||++|++|+++.+......... ...+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 467999998899999999999999999999999999999999999999999999999999999999654332222 3578
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhh-cCCeEEEEeCCcchHHHHHHHhc-CCcEEEcChHHHHHHHhcC-cccccCCceEEE
Q psy12983 472 IIISPTRELSMQTFGVLKELMKY-HHHTYGLIMGGASRQAEAQKLAK-GINIIVATPGRLLDHLQNT-PEFLYKNLQCLI 548 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~-~~~~v~~l~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~-~~~~~~~l~lvV 548 (838)
+||+|||||+.|+.+++..+... .++++.++.||.+..+....+.+ +++|+|||||+|.+++.+. ..+.++++.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998887 57889999999988888877754 6899999999999999884 345577999999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK 628 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 628 (838)
+||||+++++||...+..|+..+|++++.-+||||....+..+...+++ +++.+.+........+..+..+|..|+.+.
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLR-Npv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLR-NPVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhcc-CceeeeecccccccCchhhcceeeEecHHH
Confidence 9999999999999999999999999999999999999999999999997 888888887766668888999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 629 RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 629 k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
|...++.++..+..+++|||++|+..+++.+..+..+ ...+..+||.|++..|..++..|++..-.+|+|||+++|||
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999999999999999999999999999999876 67899999999999999999999998889999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcC-CCCccccccchhhHHHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAK-IPLNEFEFSWSKISDIQLQLEKL 785 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~ 785 (838)
|||++++||+||+|.+++.|+||+||+||+ |+.|.+++|+.+.+..++.+|+-.+ .+++++......+. ...++.++
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~-gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~-~~~~ir~~ 399 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARA-GREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS-VYQDIRSI 399 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhc-cCccceEEEecccHHHHHHHHHhcCccchhhhcccccchh-HHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999998775 45555544433332 67888999
Q ss_pred HhhcHHHHHhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCccccc
Q psy12983 786 ISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTR 836 (838)
Q Consensus 786 ~~~~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~~ 836 (838)
+.++..+..++.+||+||+|+|.+|.+..+|+++.||++.+|.+|||+-=|
T Consensus 400 ~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgLl~lP 450 (567)
T KOG0345|consen 400 ISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGLLRLP 450 (567)
T ss_pred hcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999987554
No 3
>KOG0343|consensus
Probab=100.00 E-value=4.1e-69 Score=575.01 Aligned_cols=441 Identities=44% Similarity=0.750 Sum_probs=423.4
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
....|++++ ++...+++|.+.+|..+|.+|+++||..+.|+|++..|.||||||++|++|+++.+...+|.+.+|..+
T Consensus 67 ~~~kF~dlp--ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 67 TIKKFADLP--LSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhHHhCC--CchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 346799998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
|||+|||+||.|+++++.+.++.+..+.+++.||.....+..++ ++.+|+|||||||++|+.....+...++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999987776665 45899999999999999999989999999999999
Q ss_pred CCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHH
Q psy12983 552 ADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL 631 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 631 (838)
||+++++||...+..|+..+|+.+|.++||||.+..+..+++..+. +|.++.+........+.++.|+|+.++..+|..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~-dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC-CCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 9999999999999999999999999999999999999999999995 899999987777889999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 632 LLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 632 ~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
.|+.+++.+...++|||++|++.+..+++.++++ |+++..+||.|++..|..++.+|...+.-||+|||+++||+|+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999999999999999999999999999999987 88999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc-hHHHHHHHHcCCCCccccccchhhHHHHHHHHHHHhh
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE-LGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLISK 788 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 788 (838)
.|+|||++|+|.+.++|+||+||++|. +..|.+++++.|.+ ..++..|++.+++++++.+..+.+.++..+++.++.+
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~-~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~~ 461 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARY-KERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLAK 461 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcc-cCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999996 89999999999988 7788999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCcccccc
Q psy12983 789 NYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTRI 837 (838)
Q Consensus 789 ~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~~~ 837 (838)
...++..++++|.+|+++......+++|+...+++..+|.||||.++|=
T Consensus 462 ~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~ 510 (758)
T KOG0343|consen 462 DPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPR 510 (758)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999999999999984
No 4
>KOG0348|consensus
Probab=100.00 E-value=3e-64 Score=536.37 Aligned_cols=446 Identities=41% Similarity=0.698 Sum_probs=394.6
Q ss_pred cCCCCCccchhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhc--cC
Q psy12983 387 IPSILSSTQFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNL--KF 463 (838)
Q Consensus 387 ~~~~~~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~--~~ 463 (838)
....+.+..|.+|+ |++.+.+.|+. +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+... +.
T Consensus 129 ~e~~fts~~f~~LG--L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 129 SEAPFTSAAFASLG--LHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred cccccccccchhcC--CCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 44456778999999 99999999998 999999999999999999999999999999999999999999998764 33
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC-CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccC
Q psy12983 464 MPRNGTGIIIISPTRELSMQTFGVLKELMKYHH-HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYK 542 (838)
Q Consensus 464 ~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~-~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~ 542 (838)
.+.+|.-+|||+||||||.|+++.+.++.+.+. +.-+.+.||.....+..++++|++|+|+|||||.+|+.+...+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 456789999999999999999999999988764 3446788999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCC-------------ccceEEEEeeecccchHHHHHHHccCCCeEEEecCc-
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLP-------------KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDT- 608 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~-------------~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~- 608 (838)
++++||+||+|++++.||...+..|++.+. +..|-+++|||++..+..++...++ +|.+|..+..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLk-Dpv~I~ld~s~ 365 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLK-DPVYISLDKSH 365 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcccc-Cceeeeccchh
Confidence 999999999999999999999999998872 2468899999999999999999996 7888873211
Q ss_pred ----------------------cccccccceeeEEEECCchhHHHHHHHHHHhc----CCCeEEEEecchhhHHHHHHHh
Q psy12983 609 ----------------------KEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN----RKKKVMVFFSSCMSVKFHHELL 662 (838)
Q Consensus 609 ----------------------~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~----~~~kvIIF~~t~~~~~~l~~~L 662 (838)
+....+..+.+.|.+++..-++..|..++.+. ...++|||+++++.++..+..|
T Consensus 366 ~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 366 SQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred hhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 11334566788899999998988888888653 5679999999999999999988
Q ss_pred hcC----------------------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCC
Q psy12983 663 NYI----------------------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP 720 (838)
Q Consensus 663 ~~~----------------------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p 720 (838)
.+. +.++..+||+|++++|..+++.|...+..||+|||+++||+|+|+|.+||+||+|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC
Confidence 752 3468899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcCCCCccccc-----------------cch-hhHHHHHHH
Q psy12983 721 DDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEF-----------------SWS-KISDIQLQL 782 (838)
Q Consensus 721 ~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~-----------------~~~-~l~~~~~~l 782 (838)
.+..+|+||+||++|+ |..|.+++|+.|.|.++++.++...+.+.+... .|. ....++..+
T Consensus 526 ~s~adylHRvGRTARa-G~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~q~~~ 604 (708)
T KOG0348|consen 526 FSTADYLHRVGRTARA-GEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTLQLNL 604 (708)
T ss_pred CCHHHHHHHhhhhhhc-cCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHHHHHH
Confidence 9999999999999998 899999999999999999999887665544321 132 345678899
Q ss_pred HHHHhhcHHHHHhHHHHHHHHHHHHhccc--cccccCCCCCCHHHHHhhcCccccc
Q psy12983 783 EKLISKNYFLNMSGKEAFKAYVRAYDSHH--LKQIFDIDTMDLGKDSKHTCVLMTR 836 (838)
Q Consensus 783 ~~~~~~~~~l~~~~~~a~~~~i~~y~~~~--~~~~f~~~~ldl~~~a~~~~l~~~~ 836 (838)
++++..+..+...++++|.+|++.|.+|. ++.+|..+.++|+++|+||||-.+|
T Consensus 605 e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~AKSFaLReaP 660 (708)
T KOG0348|consen 605 ERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVAKSFALREAP 660 (708)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHHHhhHhhhcc
Confidence 99999999999999999999999999887 6889999999999999999998776
No 5
>KOG0330|consensus
Probab=100.00 E-value=4.8e-62 Score=503.31 Aligned_cols=382 Identities=37% Similarity=0.599 Sum_probs=351.7
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
+..+|.+|+ +.+.+++++...||..||++|+++||.++.|+|+|..|.||||||.+|++|+++.+... .....+
T Consensus 59 ~~~sf~dLg--v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~----p~~~~~ 132 (476)
T KOG0330|consen 59 SFKSFADLG--VHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE----PKLFFA 132 (476)
T ss_pred hhcchhhcC--cCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC----CCCceE
Confidence 446789998 99999999999999999999999999999999999999999999999999999999872 345889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
+|++||||||.|+.+.++.++...++.+..+.||.+...+...+.+.++|+|+|||+|.+|+.+.+.+.++.++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHH
Q psy12983 552 ADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL 631 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 631 (838)
||+++++.|.+.+..|++.+|..+|.++||||++..+..+....++ .|..+.+. ..+.....++|+|...+...|..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~-~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLD-NPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccC-CCeEEecc--chhcchHHhhhheEeccccccch
Confidence 9999999999999999999999999999999999999999987775 67666554 34566778899999999999999
Q ss_pred HHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc
Q psy12983 632 LLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV 711 (838)
Q Consensus 632 ~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v 711 (838)
.|..+++...+..+||||+++..+++++-.|+.+|+.+..+||+|++..|.-.++.|++|..+||||||+++||+|+|.+
T Consensus 290 yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 290 YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCccccccchhhHHHHHHHH
Q psy12983 712 DWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFEFSWSKISDIQLQLE 783 (838)
Q Consensus 712 ~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~l~ 783 (838)
++|||||+|.+..+|+||+||+||+ |++|.++.|++.-|.+.+..++.. +..++++....+....+.+.+.
T Consensus 370 d~VVNyDiP~~skDYIHRvGRtaRa-GrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~ 441 (476)
T KOG0330|consen 370 DVVVNYDIPTHSKDYIHRVGRTARA-GRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVA 441 (476)
T ss_pred eEEEecCCCCcHHHHHHHccccccc-CCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999863 5555565555444444444443
No 6
>KOG0331|consensus
Probab=100.00 E-value=6.2e-60 Score=520.72 Aligned_cols=362 Identities=35% Similarity=0.581 Sum_probs=334.5
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHh--ccCCCCCCcEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYN--LKFMPRNGTGI 471 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~--~~~~~~~~~~v 471 (838)
..|.+++ +++....+++..||..|||+|.++||.++.|+|++..|.||||||++|++|++.++.. ......+++.+
T Consensus 91 ~~f~~~~--ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 91 AAFQELG--LSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred hhhhccc--ccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 4788888 9999999999999999999999999999999999999999999999999999999986 23344568999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
|||+||||||.|+...+.++......+..+++||.....+...+.++++|+|+||+++.+++.... ..++++.++|+||
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDE 247 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEecc
Confidence 999999999999999999999999998999999999999999999999999999999999999875 7789999999999
Q ss_pred CCcccccCcHHHHHHHHHHC-CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHH
Q psy12983 552 ADRILDIGFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF 630 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 630 (838)
||+|+++||.++++.|+..+ ++..|++++|||++..+..++..++. ++..+.+..........++.|....++...|.
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~ 326 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAKL 326 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHHH
Confidence 99999999999999999999 66678999999999999999999997 88888877665666677888888888888888
Q ss_pred HHHHHHHHhc---CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCC
Q psy12983 631 LLLFTFLKKN---RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLD 707 (838)
Q Consensus 631 ~~l~~~l~~~---~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiD 707 (838)
..+..++... ..+++||||+|++.|+.++..|+..++++..+||+.++.+|+.+++.|++|+..||||||+++||||
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 8777777654 5779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 708 IPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 708 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+|+|++|||||+|.+.++|+||+||+||+ |++|.++.|+...+....+.+.+
T Consensus 407 i~dV~lVInydfP~~vEdYVHRiGRTGRa-~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 407 VPDVDLVINYDFPNNVEDYVHRIGRTGRA-GKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred CccccEEEeCCCCCCHHHHHhhcCccccC-CCCceEEEEEeHHHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999988776665543
No 7
>KOG0338|consensus
Probab=100.00 E-value=1.2e-58 Score=490.90 Aligned_cols=390 Identities=34% Similarity=0.555 Sum_probs=350.5
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|.+++ |+.++++++..+||..|||+|..+||..+-|+|++.||.||||||.+|++|+++.++..... -...+|||
T Consensus 181 ~sF~~mN--LSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLV 257 (691)
T KOG0338|consen 181 ESFQSMN--LSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLV 257 (691)
T ss_pred hhHHhcc--cchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEE
Confidence 5799998 99999999999999999999999999999999999999999999999999999988753221 34678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
|+|||+|+.|++++.+++..+..+.+++..||-+...+...++..+||||+|||+|.+|+.+...|.++++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC---chhHH
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP---SEKRF 630 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~---~~~k~ 630 (838)
+|++.||..++.+|+..+++++|.++||||++..+..++...+. .|+.+.+++.... ...+.|.|+... ...+.
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~-kPvrifvd~~~~~--a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLN-KPVRIFVDPNKDT--APKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcC-CCeEEEeCCcccc--chhhhHHHheeccccccccH
Confidence 99999999999999999999999999999999999999999996 7888877765433 345666565443 34466
Q ss_pred HHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC
Q psy12983 631 LLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA 710 (838)
Q Consensus 631 ~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~ 710 (838)
..+..++...-..+++||+.|++.|.++.-.|.-+|+++.-+||.+++.+|...+++|++++++||||||+++||+||+.
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 67777777776779999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc----CCCCccccccchhhHHHHHHHHHHH
Q psy12983 711 VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA----KIPLNEFEFSWSKISDIQLQLEKLI 786 (838)
Q Consensus 711 v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~l~~~~ 786 (838)
+.+||||.+|.+...|+||+||++|+ |+.|+++.|+..+|...++.+.+. +-++..-.+.|..+..+.+.++++-
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARA-GRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE 573 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARA-GRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEME 573 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhc-ccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998 899999999999999999888654 4566666677777777777666665
Q ss_pred hhcH
Q psy12983 787 SKNY 790 (838)
Q Consensus 787 ~~~~ 790 (838)
...+
T Consensus 574 ~~iq 577 (691)
T KOG0338|consen 574 DTIQ 577 (691)
T ss_pred HHHH
Confidence 4433
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-57 Score=522.09 Aligned_cols=360 Identities=38% Similarity=0.614 Sum_probs=334.4
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcE-EE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTG-II 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~-vl 472 (838)
..|++++ +++++++++.+.||..|||+|..+||.++.|+|+++.|+||||||++|.+|+++.+.... ..... +|
T Consensus 29 ~~F~~l~--l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~~~~aL 103 (513)
T COG0513 29 PEFASLG--LSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERKYVSAL 103 (513)
T ss_pred CCHhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccCCCceE
Confidence 5699998 999999999999999999999999999999999999999999999999999999976321 11122 99
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
|++||||||.|+++.+..+.... ++.+..++||.+...+...+..+++|||+||+|+++|+... .+.++.+.++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEecc
Confidence 99999999999999999999988 78899999999999999889888999999999999999988 57889999999999
Q ss_pred CCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh-HH
Q psy12983 552 ADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK-RF 630 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-k~ 630 (838)
||+|+++||.+.+..|+..++.+.|+++||||++..+..+.+.+++ +|..+.+...........+.+.++.+.... |.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999997 787888875555557788999999999876 99
Q ss_pred HHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC
Q psy12983 631 LLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA 710 (838)
Q Consensus 631 ~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~ 710 (838)
..|..++......++||||+|+..++.++..|...|+.+..+||+|++.+|.++++.|++|+.+||||||+++||||+|+
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC-chHHHHHHHHc
Q psy12983 711 VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE-ELGFLRYLKQA 761 (838)
Q Consensus 711 v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~-e~~~~~~l~~~ 761 (838)
+++|||||+|.+.+.|+||+||+||+ |+.|.++.|+.+. |...+..+++.
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRa-G~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRA-GRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccC-CCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 99999999999999999999999998 8999999999986 88888777764
No 9
>KOG0328|consensus
Probab=100.00 E-value=9.7e-57 Score=445.20 Aligned_cols=369 Identities=30% Similarity=0.518 Sum_probs=338.1
Q ss_pred CCCccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 390 ILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 390 ~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
......|++++ +.+++++++.+.||+.|+.+|+.||+.+++|+|+++++..|+|||.+|.+.+++.+.- .....
T Consensus 23 ~~v~~~F~~Mg--l~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~----~~r~t 96 (400)
T KOG0328|consen 23 VKVIPTFDDMG--LKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI----SVRET 96 (400)
T ss_pred cccccchhhcC--chHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc----cccee
Confidence 34457899998 9999999999999999999999999999999999999999999999999988887643 23457
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEE
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvVi 549 (838)
++++++|||+||.|+.+.+..++...++.+..+.||++..+..+.+..+.+++.+|||++++.+++.. +..+.++++|+
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVL 175 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVL 175 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc-ccccceeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999998875 56689999999
Q ss_pred eCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh-
Q psy12983 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK- 628 (838)
Q Consensus 550 DEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 628 (838)
||||.+++.||..++-.+.+++|+..|++++|||++..+.++...+.. +|+.+.+... .....+++++|+....++
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmt-dpvrilvkrd--eltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMT-DPVRILVKRD--ELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcC-CceeEEEecC--CCchhhhhhheeeechhhh
Confidence 999999999999999999999999999999999999999999998885 7877776543 456678899998887765
Q ss_pred HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCC
Q psy12983 629 RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDI 708 (838)
Q Consensus 629 k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDi 708 (838)
|.+.|+++-....-.+.+|||||+..+.++.+.+++..+.|...||+|.+++|+.++++|+.|+.+||++||+.+||+|+
T Consensus 253 KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCcccc
Q psy12983 709 PAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFE 769 (838)
Q Consensus 709 p~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~~ 769 (838)
|.+++|||||+|.+.+.|+||+||.||. |++|.++.|+..+|.+.++.+++. ...+.+..
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRF-GRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhcccccc-CCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999997 999999999999999999998863 34444443
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-54 Score=494.15 Aligned_cols=362 Identities=31% Similarity=0.502 Sum_probs=322.0
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC---CCCC
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM---PRNG 468 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~---~~~~ 468 (838)
....|++++ +++++++++.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+...... ...+
T Consensus 6 ~~~~f~~~~--l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 6 TEQKFSDFA--LHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 446799998 99999999999999999999999999999999999999999999999999999988653321 1245
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 469 TGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 469 ~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
.++|||+||++||.|+++.+..+....++.+..++||.+...+...+.++++|+|+||+++.+++... .+.+++++++|
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lV 162 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVV 162 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEE
Confidence 78999999999999999999999988899999999998888887888888999999999999988765 36679999999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCCc--cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLPK--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS 626 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~~--~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 626 (838)
|||||++.+++|...+..++..++. ..+.+++|||++..+..+....+. .+..+.+.... .....+.+.+.....
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p~~i~v~~~~--~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN-NPEYVEVEPEQ--KTGHRIKEELFYPSN 239 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC-CCEEEEEcCCC--cCCCceeEEEEeCCH
Confidence 9999999999999999999998874 567899999999988888777764 56666654332 223455666666777
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 627 EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 627 ~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
..|...+..++......++||||+++..|+.+++.|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 78888888888887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+++...+..+++
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~-G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRA-GASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCC-CCCeeEEEEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999997 89999999999999888888765
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.4e-54 Score=503.77 Aligned_cols=362 Identities=32% Similarity=0.555 Sum_probs=321.4
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC-CCCCCcEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGTGI 471 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~-~~~~~~~v 471 (838)
...|++++ +++++++.|.++||..||++|.++||.+++|+|+++++|||||||++|++|++..+..... ....++.+
T Consensus 129 ~~~f~~~~--l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 129 VVSFEYTS--FPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred cCCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 46788887 9999999999999999999999999999999999999999999999999999988765321 22346789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
|||+||++||.|+.+.++.+....++.+..++|+.....+...+..+++|+|+||++|.+++.... ..++++++|||||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lViDE 285 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-TNLRRVTYLVLDE 285 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEEeeh
Confidence 999999999999999999998888888899999998888888888899999999999999988753 5678999999999
Q ss_pred CCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHH
Q psy12983 552 ADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL 631 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 631 (838)
||++.+++|...+..++..+++++|++++|||++..+..+....+...+..+.+.... ......+.+.+..+....|..
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~~k~~ 364 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEKRG 364 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEechhHHH
Confidence 9999999999999999999999999999999999988888887776566666654332 223345667777777777888
Q ss_pred HHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 632 LLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 632 ~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
.+..++... ...++||||++++.|+.+++.|+..++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 888877764 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHH
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLK 759 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~ 759 (838)
++++||+||+|.+.++|+||+||+||+ |+.|.+++|+++++....+.+.
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~-G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRA-GAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccC-CCCceEEEEECcchHHHHHHHH
Confidence 999999999999999999999999997 8999999999998876655554
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-53 Score=499.69 Aligned_cols=366 Identities=34% Similarity=0.535 Sum_probs=327.2
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|.+++ +++.++++|.++||.+|+|+|.++|+.+++++|+|++||||+|||++|++|+++.+... ..+.++||
T Consensus 6 ~~f~~l~--L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----~~~~~~LI 79 (629)
T PRK11634 6 TTFADLG--LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----LKAPQILV 79 (629)
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----cCCCeEEE
Confidence 4589987 99999999999999999999999999999999999999999999999999999887541 24578999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
|+||++||.|+++.++.+.... ++.+..++|+.+...+...+..+++|+|+||+++++++.... +.++++++||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlDEA 158 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLDEA 158 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEeccH
Confidence 9999999999999999987765 688888999998888888888889999999999999988754 56799999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++++++|...+..++..++...|+++||||++.....+...++. ++..+.+... ......+.+.++......|...
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~-~~~~i~i~~~--~~~~~~i~q~~~~v~~~~k~~~ 235 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK-EPQEVRIQSS--VTTRPDISQSYWTVWGMRKNEA 235 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcC-CCeEEEccCc--cccCCceEEEEEEechhhHHHH
Confidence 999999999999999999999999999999999988888888775 5655555432 2233456677777777788889
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++......++||||+|+..++.+++.|...++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|+++
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 99999887778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCccccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFEF 770 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~~~ 770 (838)
+||+||+|.+.++|+||+|||||+ |+.|.+++|+.+.|...++.+++. +..+++..+
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRa-Gr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRA-GRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCC-CCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 999999999999999999999997 899999999999999888888763 555555543
No 13
>KOG0340|consensus
Probab=100.00 E-value=4.1e-55 Score=447.06 Aligned_cols=372 Identities=34% Similarity=0.547 Sum_probs=336.2
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
+..+|+.|+ +++|+.+.+.++|+.+|||+|+.|||.+++|+|++-+|.||||||.+|.+|+++.+.+. ..+..+
T Consensus 5 t~~~F~~LG--l~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed----P~giFa 78 (442)
T KOG0340|consen 5 TAKPFSILG--LSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED----PYGIFA 78 (442)
T ss_pred ccCchhhcC--ccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC----CCcceE
Confidence 457799999 99999999999999999999999999999999999999999999999999999988662 357789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc---ccccCCceEEE
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP---EFLYKNLQCLI 548 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~---~~~~~~l~lvV 548 (838)
+|+.||++||.|+.+.|..+++..+.++..++||.+.-.+...+.+.+|++|+|||++.+++..+. .+.+++++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 999999999999999999999999999999999999998888999999999999999999998873 45578999999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK 628 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 628 (838)
+||||++.+..|.+.+.-+...+|..+|.++||||+++....+........ ........+.......+.+.|+.++...
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI~~~~~v 237 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYILVSIDV 237 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhheeecchhh
Confidence 999999999999999999999999999999999999988777766555432 2223333345567788899999999999
Q ss_pred HHHHHHHHHHhc---CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 629 RFLLLFTFLKKN---RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 629 k~~~l~~~l~~~---~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
+...++..++.. ..+.++||+|+..+|+.++..|+.+++++..+|+.|++.+|...+.+|+++..+||||||+++||
T Consensus 238 kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 999988888753 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCcccccc
Q psy12983 706 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFEFS 771 (838)
Q Consensus 706 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~~~~ 771 (838)
+|||.|+.|||||.|.++.+|+||+||++|+ |+.|.++.++.+.|.+.+..+++. +..+++++..
T Consensus 318 LDIP~V~LVvN~diPr~P~~yiHRvGRtARA-GR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 318 LDIPTVELVVNHDIPRDPKDYIHRVGRTARA-GRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred CCCCceeEEEecCCCCCHHHHHHhhcchhcc-cCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999998 899999999999999999999863 5666666543
No 14
>KOG0333|consensus
Probab=100.00 E-value=1.5e-54 Score=461.80 Aligned_cols=361 Identities=32% Similarity=0.511 Sum_probs=331.4
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhcc-----CCCCC
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK-----FMPRN 467 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~-----~~~~~ 467 (838)
-.+|++.+ ++.++++.+...||..|+|+|..+||..++.+|+|..+.||||||++|++|++..+.... .....
T Consensus 244 lrnwEE~~--~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 244 LRNWEESG--FPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred ccChhhcC--CCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 36799988 999999999999999999999999999999999999999999999999999999886643 23346
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEE
Q psy12983 468 GTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCL 547 (838)
Q Consensus 468 ~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lv 547 (838)
|+.+++++|||+|++|+.++-.++....++.+..+.||.+.+++--.+..+|+|+|+||++|.+.+.+.. +.++++.+|
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~-lvl~qctyv 400 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-LVLNQCTYV 400 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH-HHhccCceE
Confidence 8899999999999999999999999999999999999999999988899999999999999999988764 556899999
Q ss_pred EEeCCCcccccCcHHHHHHHHHHCCc-------------------------cceEEEEeeecccchHHHHHHHccCCCeE
Q psy12983 548 IIDEADRILDIGFEEDMKQIVNLLPK-------------------------RRQTMLFSATTTAKTETLTKLALKKEPVY 602 (838)
Q Consensus 548 ViDEah~l~~~gf~~~~~~il~~l~~-------------------------~~qil~lSAT~~~~~~~l~~~~l~~~~~~ 602 (838)
|+|||++|.++||.+++..++..+|. .+|.++||||+++.+..++..+++ .|++
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr-~pv~ 479 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR-RPVV 479 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh-CCeE
Confidence 99999999999999999999999863 168999999999999999999997 7888
Q ss_pred EEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHH
Q psy12983 603 IGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRT 682 (838)
Q Consensus 603 i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~ 682 (838)
+.+.... .....++|.++....+.|...|..+++++...++|||+|+++.|+.+++.|.+.|+.+..+||+-++++|+
T Consensus 480 vtig~~g--k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 480 VTIGSAG--KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred EEeccCC--CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 7776543 34456788888889899999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 683 TTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 683 ~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
.++..|++|..+||||||+++||||+|||.+|||||+++++++|.|||||+||+ |+.|.++.|+++.|-..+..|++
T Consensus 558 ~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA-Gk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 558 NALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA-GKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred HHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc-ccCceeEEEeccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 89999999999999776655554
No 15
>KOG0346|consensus
Probab=100.00 E-value=2.4e-54 Score=451.65 Aligned_cols=428 Identities=30% Similarity=0.449 Sum_probs=356.2
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC--CCCCcEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM--PRNGTGI 471 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~--~~~~~~v 471 (838)
..|++++ |++.+++++.+.||++||-+|+.+||.+++|+|++..|.||||||.+|++|+++.+...+.. ...+..+
T Consensus 19 ktFe~~g--LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFG--LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred ccHHHhC--CCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 5799998 99999999999999999999999999999999999999999999999999999999876543 4568889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcC--CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEE
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHH--HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~--~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvVi 549 (838)
+|++||+|||+|++..+.++...++ +++.-+....+.......+...++|||+||++++.++.......++.++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999887765 33444444555555667788889999999999999999887666789999999
Q ss_pred eCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 550 DEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
||||.++..||.++++.+...+|+..|.++||||+...+..+....++ +|+++.+.+.+. .....+.|+++.|.+.+|
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~-nPviLkl~e~el-~~~dqL~Qy~v~cse~DK 254 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLH-NPVILKLTEGEL-PNPDQLTQYQVKCSEEDK 254 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhcc-CCeEEEeccccC-CCcccceEEEEEeccchh
Confidence 999999999999999999999999999999999999999999999996 788877765443 467889999999999999
Q ss_pred HHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc--------
Q psy12983 630 FLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD-------- 700 (838)
Q Consensus 630 ~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~-------- 700 (838)
...++.+++.. -.+++|||+|+.+.|.++.-.|...|++.++++|.|+...|-.++++|..|-++++||||
T Consensus 255 flllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ 334 (569)
T KOG0346|consen 255 FLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKL 334 (569)
T ss_pred HHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhh
Confidence 99999999865 667999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------CCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 701 ---------------------------VAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 701 ---------------------------~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
-.+||||+.+|++|+|||+|.+...|+||+||++|+ +++|.++.|+.|.+..
T Consensus 335 eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg-~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 335 EEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG-NNKGTALSFVSPKEEF 413 (569)
T ss_pred hccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC-CCCCceEEEecchHHh
Confidence 246899999999999999999999999999999996 8999999999998876
Q ss_pred HHHHHHHc--------CC-CCccccccchhhHHHHHHHHHHHhhcHHHHHhHHHHHHHHHH--HHhccccccccCCCCCC
Q psy12983 754 FLRYLKQA--------KI-PLNEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVR--AYDSHHLKQIFDIDTMD 822 (838)
Q Consensus 754 ~~~~l~~~--------~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~a~~~~i~--~y~~~~~~~~f~~~~ld 822 (838)
-...++.. +. .+..+++..+.+....-+.+............ ++-..-++ -+.+.++|..|+.+..|
T Consensus 414 g~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvAvr--eaR~kEikqEll~SeKLK~~FeeNprd 491 (569)
T KOG0346|consen 414 GKESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVR--EARLKEIKQELLNSEKLKAFFEENPRD 491 (569)
T ss_pred hhhHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhcChHH
Confidence 44443321 11 34555566555555544444433222111111 11111122 25667778888888877
Q ss_pred HHHHHh
Q psy12983 823 LGKDSK 828 (838)
Q Consensus 823 l~~~a~ 828 (838)
|.-+..
T Consensus 492 l~lLrh 497 (569)
T KOG0346|consen 492 LQLLRH 497 (569)
T ss_pred HHHhhc
Confidence 765543
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.8e-54 Score=491.42 Aligned_cols=355 Identities=33% Similarity=0.568 Sum_probs=322.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++.+.+++.++||..|||+|.++|+.+++|+|++++||||||||++|++|+++.+... ....+++|
T Consensus 4 ~~f~~l~--l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----~~~~~~li 77 (460)
T PRK11776 4 TAFSTLP--LPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----RFRVQALV 77 (460)
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----cCCceEEE
Confidence 5689998 99999999999999999999999999999999999999999999999999999987541 23558999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
++||++||.|+.+.++.+.... +..+..++||.+...+...+..+++|+|+||+++.+++.+.. +.++++++||+|||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViDEa 156 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLDEA 156 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEECH
Confidence 9999999999999999987654 688888999999888888888899999999999999988753 56789999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++.+++|...+..++..+++..|+++||||+++....+....+. .+..+.+.... ....+.+.++.++...|...
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~ 232 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQR-DPVEVKVESTH---DLPAIEQRFYEVSPDERLPA 232 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcC-CCEEEEECcCC---CCCCeeEEEEEeCcHHHHHH
Confidence 999999999999999999999999999999999998888887775 56666554432 23446777888888889999
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++......++||||++++.++.+++.|.+.++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 233 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 233 LQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+||+||.|.+..+|+||+||+||+ |..|.+++|+.++|...++.+++
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~-g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRA-GSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCC-CCcceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999997 88999999999999888877765
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-53 Score=487.14 Aligned_cols=359 Identities=33% Similarity=0.564 Sum_probs=319.0
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC--CCCCcEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM--PRNGTGII 472 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~--~~~~~~vl 472 (838)
+|++++ +++++.+.|.++||..||++|.++|+.+++++|+++++|||||||++|++|+++.+...... .....++|
T Consensus 2 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLG--LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CHHHcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 588887 99999999999999999999999999999999999999999999999999999988653221 12245799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
||+||++||.|+.+.++.+....+..+..++|+.+...+...+.++++|+|+||++|++++.... +.++++++||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~lViDEa 158 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEILVLDEA 158 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-cccccceEEEeecH
Confidence 99999999999999999998888888889999998888877888889999999999999887653 56789999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++.+++|...+..++..++...|+++||||+++....+....+. ++..+.+... ......+.+.+..++...+...
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~ 235 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLH-NPLEIEVARR--NTASEQVTQHVHFVDKKRKREL 235 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcC-CCeEEEEecc--cccccceeEEEEEcCHHHHHHH
Confidence 999999999999999999999999999999999988887777664 5555544332 2233456667777777777777
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++......++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 236 l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC
Confidence 78878777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+||+|++|.+..+|+||+||+||. |..|.+++|+..+|...++.+++
T Consensus 316 ~VI~~~~P~~~~~yvqR~GRaGR~-g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 316 HVVNYELPNVPEDYVHRIGRTGRA-AATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred EEEEeCCCCCHHHhhhhccccccC-CCCeeEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999997 89999999999999888888775
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-53 Score=494.53 Aligned_cols=361 Identities=32% Similarity=0.486 Sum_probs=321.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC---CCCCCcE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF---MPRNGTG 470 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~---~~~~~~~ 470 (838)
..|++++ +++++++.|.++||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+..... ....+.+
T Consensus 9 ~~f~~l~--l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFD--LHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 4699998 9999999999999999999999999999999999999999999999999999998864221 1123578
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
+|||+||++|+.|+++.+..+....++.+..++|+.+...+...+.++++|+|+||++|++++.....+.++.+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 99999999999999999999998888999999999998888788888899999999999999887655667899999999
Q ss_pred CCCcccccCcHHHHHHHHHHCCc--cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh
Q psy12983 551 EADRILDIGFEEDMKQIVNLLPK--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK 628 (838)
Q Consensus 551 Eah~l~~~gf~~~~~~il~~l~~--~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 628 (838)
|||++.+++|...+..++..++. ..|+++||||++..+..+....+. .+..+.+... ......+.+.++......
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~~~--~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVETE--TITAARVRQRIYFPADEE 243 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEeccc--cccccceeEEEEecCHHH
Confidence 99999999999999999999886 689999999999988888877775 4444433322 223345667777777788
Q ss_pred HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCC
Q psy12983 629 RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDI 708 (838)
Q Consensus 629 k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDi 708 (838)
+...+..++......++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 244 k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 88888888888788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 709 PAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 709 p~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|++++||+||.|.+..+|+||+||+||. |..|.+++|+.+.+...+..+++
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~-G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARL-GEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccC-CCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999997 89999999999988877777755
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-52 Score=478.30 Aligned_cols=359 Identities=34% Similarity=0.564 Sum_probs=316.6
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl 474 (838)
.|++++ +++.+++.+.++||..|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+...........++||+
T Consensus 2 ~f~~l~--l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil 79 (434)
T PRK11192 2 TFSELE--LDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 79 (434)
T ss_pred CHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 588888 999999999999999999999999999999999999999999999999999999887543333345789999
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 475 ~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
+||++|+.|+++.+..+....+..+..++|+.....+...+.++++|+|+||++|++++.... +.++++++|||||||+
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lViDEah~ 158 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLILDEADR 158 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEEEECHHH
Confidence 999999999999999999888999999999998888877788889999999999999887754 6678999999999999
Q ss_pred ccccCcHHHHHHHHHHCCccceEEEEeeecccc-hHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-hhHHHH
Q psy12983 555 ILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAK-TETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLL 632 (838)
Q Consensus 555 l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~-~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~ 632 (838)
+.+++|...+..+...++...|+++||||++.. ...+....+ ..+..+...... .....+.+.+..++. ..+...
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~k~~~ 235 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSR--RERKKIHQWYYRADDLEHKTAL 235 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCc--ccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999998889999999999853 556666555 356665554332 223445555655553 567777
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..+++.....++||||+++++++.+++.|++.++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 236 l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 236 LCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 88888776778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+||+||+|.+...|+||+||+||+ |..|.+++++...|...+..+++
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~-g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRA-GRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccC-CCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999997 89999999999999888887764
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-52 Score=485.47 Aligned_cols=366 Identities=29% Similarity=0.471 Sum_probs=315.4
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC---CCCCCcE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF---MPRNGTG 470 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~---~~~~~~~ 470 (838)
..|++++ +++.+++.|.+.||..|||+|.++|+.+++|+|+++++|||||||++|++|++..+..... ....+.+
T Consensus 121 ~~f~~~~--l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 121 LSFSSCG--LPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred cCHHhCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 5688887 9999999999999999999999999999999999999999999999999999988764221 1235778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
+|||+||++||.|+.+.++.+....+..+..++||.....+...+..+++|+|+||++|.+++... ...++++++||||
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViD 277 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLD 277 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEee
Confidence 999999999999999999998887788888889998888887788888999999999999988876 4667999999999
Q ss_pred CCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHH
Q psy12983 551 EADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF 630 (838)
Q Consensus 551 Eah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 630 (838)
|||++.+++|...+..++..++ +.|++++|||+++.+..+...... ++..+.+.... .....+.+.+..+....+.
T Consensus 278 Ead~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~-~~~~i~~~~~~--~~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 278 EVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAK-DIILISIGNPN--RPNKAVKQLAIWVETKQKK 353 (518)
T ss_pred cHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCC-CCEEEEeCCCC--CCCcceeEEEEeccchhHH
Confidence 9999999999999999998885 589999999999998888887764 56666554332 2234456667777777777
Q ss_pred HHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhc-CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCC
Q psy12983 631 LLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNY-IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLD 707 (838)
Q Consensus 631 ~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~-~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiD 707 (838)
..+..++... ...++||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 7888888754 246899999999999999999975 5889999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHH----HHHcCCCCcc
Q psy12983 708 IPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRY----LKQAKIPLNE 767 (838)
Q Consensus 708 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~----l~~~~~~~~~ 767 (838)
+|++++||+||+|.+..+|+||+|||||. |..|.+++|+.+++...+.. ++..+..+++
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~-g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRM-GEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccC-CCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999997 88999999999988665444 4444544443
No 21
>KOG0326|consensus
Probab=100.00 E-value=2.5e-54 Score=434.54 Aligned_cols=366 Identities=31% Similarity=0.490 Sum_probs=338.2
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
..+|+++- |..+++..+.+.||+.|+|+|.++||.++.|+|+++.|..|+|||.+|.+|+++.+.. ..+.-+++
T Consensus 84 G~efEd~~--Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~----~~~~IQ~~ 157 (459)
T KOG0326|consen 84 GNEFEDYC--LKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP----KKNVIQAI 157 (459)
T ss_pred CccHHHhh--hhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----cccceeEE
Confidence 46799987 9999999999999999999999999999999999999999999999999999998754 24567899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
+++|||+||.|..+.++++.+..++.+...+||++..+..-++.+..+++|+|||+++++..+.- -.+++..++|+|||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV-a~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV-ADLSDCVILVMDEA 236 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc-ccchhceEEEechh
Confidence 99999999999999999999999999999999999999988889999999999999999888764 45689999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|.+++..|...+..++..+|+.+|++++|||.|-.+..+....++ +|..+..- +...+.++.|+|.++.+..|...
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~-kPy~INLM---~eLtl~GvtQyYafV~e~qKvhC 312 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLK-KPYEINLM---EELTLKGVTQYYAFVEERQKVHC 312 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhcc-Ccceeehh---hhhhhcchhhheeeechhhhhhh
Confidence 999999999999999999999999999999999999999999996 56565544 34667889999999999999999
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
|-.++.+..-.+.|||||+.+.++.+|+.+.++|+.+.++|+.|-+++|..++..|++|.++.|||||.+.||||+++++
T Consensus 313 LntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 313 LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCccccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFEF 770 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~~ 770 (838)
+|||||+|++.++|.||+||.||. |..|.|+.++..+|...+..+++ .|.+++.+.-
T Consensus 393 vVINFDfpk~aEtYLHRIGRsGRF-GhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 393 VVINFDFPKNAETYLHRIGRSGRF-GHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred EEEecCCCCCHHHHHHHccCCccC-CCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 999999999999999999999997 89999999999999888888875 5766666653
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-50 Score=467.04 Aligned_cols=361 Identities=31% Similarity=0.495 Sum_probs=314.2
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC---CCCCc
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM---PRNGT 469 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~---~~~~~ 469 (838)
...|.++. +++.+.++|.++||..++++|.++|+.+++|+|+++.+|||||||++|++|+++.+.+.... ..+..
T Consensus 86 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 86 KTRFHDFN--LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCHhHCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 35688887 99999999999999999999999999999999999999999999999999999988653211 11257
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh-cCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
++|||+||++|+.|+++.++.+....+..+..++||.+...+...+. +.++|+|+||++|++++..+. ..++++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCceEE
Confidence 89999999999999999999998888889989999877766655554 468999999999998877654 5678999999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCCc--cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLPK--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS 626 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~~--~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 626 (838)
|||+|++.+++|...+..++..++. ..|++++|||++.....+....+. .+..+.+.... .....+.+.+..+..
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTT-DPAIVEIEPEN--VASDTVEQHVYAVAG 319 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhcc-CCEEEEeccCc--CCCCcccEEEEEecc
Confidence 9999999999999999999998864 579999999999888887777664 55555544332 223345566666677
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 627 EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 627 ~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
..+...+..++......++||||+++++++.+++.|...++.+..+||+|++++|.++++.|++|+++|||||+++++||
T Consensus 320 ~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 320 SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred hhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 77888888888887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|+|++++||+|++|.+..+|+||+||+||. |..|.+++|+.++|...+..+++
T Consensus 400 Di~~v~~VI~~~~P~s~~~y~Qr~GRaGR~-g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRA-GASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred cccCCCEEEEeCCCCCHHHHHHhhCccCCC-CCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999997 89999999999988877777765
No 23
>KOG0336|consensus
Probab=100.00 E-value=2.6e-51 Score=424.19 Aligned_cols=352 Identities=33% Similarity=0.556 Sum_probs=314.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhc--cCCCCCCcEEEEEcCCHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNL--KFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~--~~~~~~~~~vlvl~Pt~~L 480 (838)
-.+++++.+.+.||++|||+|.++||.+++|.|++.+|+||+|||++|++|.+.++... ......+..+|++.||++|
T Consensus 227 ~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 227 CYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTREL 306 (629)
T ss_pred hhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHH
Confidence 56789999999999999999999999999999999999999999999999998876543 2234567889999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc
Q psy12983 481 SMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF 560 (838)
Q Consensus 481 a~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf 560 (838)
+.|+.-..+.+ ...+....+++||.++.++.+.+.++.+|+++||++|.++.... .+++..+.++|+||||+|+++||
T Consensus 307 alqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVlDEADrMLDMgF 384 (629)
T KOG0336|consen 307 ALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVLDEADRMLDMGF 384 (629)
T ss_pred HHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEecchhhhhcccc
Confidence 99998777765 34577888999999999999999999999999999999977665 47789999999999999999999
Q ss_pred HHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhc
Q psy12983 561 EEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 640 (838)
Q Consensus 561 ~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~ 640 (838)
.+.+..|+-.+++++|+++.|||+|..+..++..+++ +|..+.+..-+ ......++|.+++..+.+|...+..+++..
T Consensus 385 EpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLd-L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 385 EPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLD-LVAVKSVKQNIIVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred cHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhh-CceEEEecccc-eeeeeeeeeeEEecccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999996 67666665433 334456778887778888887777777765
Q ss_pred -CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC
Q psy12983 641 -RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 641 -~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~ 719 (838)
...++||||.++..++.+...|.-.|+....+||+-.+.+|+..++.|++|+++||||||+++||+|+|++.+|++||+
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 6779999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHH
Q psy12983 720 PDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLK 759 (838)
Q Consensus 720 p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~ 759 (838)
|.+++.|+||+||+||+ |+.|.++.|+...|-.....|.
T Consensus 543 P~nIeeYVHRvGrtGRa-Gr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRA-GRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred CccHHHHHHHhcccccC-CCCcceEEEEehhhHHHHHHHH
Confidence 99999999999999998 8999999999998876665554
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.2e-50 Score=453.21 Aligned_cols=356 Identities=32% Similarity=0.561 Sum_probs=312.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++++.+++.++||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+.. ...+.++||
T Consensus 28 ~~~~~l~--l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~----~~~~~~~li 101 (401)
T PTZ00424 28 DSFDALK--LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY----DLNACQALI 101 (401)
T ss_pred CCHhhCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC----CCCCceEEE
Confidence 5688888 9999999999999999999999999999999999999999999999999999987643 124678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++||++|+.|+.+.+..+.......+..+.|+.........+..+++|+|+||+++.+.+.... ..++++++|||||+|
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEah 180 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEAD 180 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecHH
Confidence 9999999999999999988877788888889888877777788889999999999998887654 567899999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-hhHHHH
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLL 632 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~~ 632 (838)
++.+++|...+..++..++++.|++++|||+++....+....++ .+..+.+... ......+.+.+..... ..+...
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMR-DPKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCC--CcccCCceEEEEecChHHHHHHH
Confidence 99999999999999999999999999999999887777776664 4444433322 2233455566665554 346666
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++......++||||+++++++.+++.|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 77777776778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+||++|+|.+..+|+||+||+||. |+.|.|++|+.+++...+..+++
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~-g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRF-GRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred EEEEECCCCCHHHEeecccccccC-CCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999996 89999999999999988888865
No 25
>KOG0335|consensus
Probab=100.00 E-value=9.7e-51 Score=440.16 Aligned_cols=368 Identities=32% Similarity=0.506 Sum_probs=324.0
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC------CCCC
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM------PRNG 468 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~------~~~~ 468 (838)
.|.+.. +.+.+...++..||..|||+|+.+||.+..|++++++|+||||||.+|++|++..+...+.. ....
T Consensus 75 ~f~~~~--l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 75 TFDEAI--LGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccc--hhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 455443 77788888888999999999999999999999999999999999999999999998875321 1135
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 469 TGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 469 ~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
++++|++|||+||.|++++.+++.....+.....+|+.+...+...+.+++||+|+|||+|.+++.... +.+.+++++|
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k~~v 231 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK-ISLDNCKFLV 231 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-eehhhCcEEE
Confidence 889999999999999999999998888999999999999999999999999999999999999888764 7789999999
Q ss_pred EeCCCcccc-cCcHHHHHHHHHHCCc----cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEE
Q psy12983 549 IDEADRILD-IGFEEDMKQIVNLLPK----RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVV 623 (838)
Q Consensus 549 iDEah~l~~-~gf~~~~~~il~~l~~----~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~ 623 (838)
+||||+|++ ++|.+.++.|+..... ..|.++||||.+.....++..+++.+...+.+.. ......++.|...+
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r--vg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR--VGSTSENITQKILF 309 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee--eccccccceeEeee
Confidence 999999999 9999999999988754 7899999999999998888888875555655544 34455778889999
Q ss_pred CCchhHHHHHHHHHHhcC----CC-----eEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 624 CPSEKRFLLLFTFLKKNR----KK-----KVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 624 ~~~~~k~~~l~~~l~~~~----~~-----kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
+....|...|++++.... .+ +++|||.+++.+..++..|...+++...+||..++.+|.+.++.|++|+..
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 999999999999988543 33 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHH----HHHHHHcCCCCccc
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF----LRYLKQAKIPLNEF 768 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~----~~~l~~~~~~~~~~ 768 (838)
+||||++++||+|+|+|++||+||+|.+..+|+||+||+||+ |+.|.+..|++..+... .+.|.+++-.+++|
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~-Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV-GNGGRATSFFNEKNQNIAKALVEILTEANQEVPQW 466 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC-CCCceeEEEeccccchhHHHHHHHHHHhcccCcHH
Confidence 999999999999999999999999999999999999999997 99999999999766444 34455555555554
No 26
>KOG0347|consensus
Probab=100.00 E-value=1.8e-50 Score=432.29 Aligned_cols=362 Identities=34% Similarity=0.578 Sum_probs=314.1
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhcc-------C
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLK-------F 463 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~-------~ 463 (838)
.-..|..|. ++..++++|..+||..||++|..++|.+..| .|++-.|.||||||++|-+|++..+.... .
T Consensus 179 DvsAW~~l~--lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 179 DVSAWKNLF--LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ChHHHhcCC--CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 446688886 9999999999999999999999999999998 79999999999999999999998544321 1
Q ss_pred CCCCCcE--EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc--c
Q psy12983 464 MPRNGTG--IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE--F 539 (838)
Q Consensus 464 ~~~~~~~--vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~--~ 539 (838)
....+.+ .||++|||+||.|+.+.+.......++.+..++||-....+.+.+...++|||+|||||+.++..... -
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 1223444 89999999999999999999999999999999999999999999999999999999999999987653 2
Q ss_pred ccCCceEEEEeCCCcccccCcHHHHHHHHHHCC-----ccceEEEEeeecccc---------------------h-HHHH
Q psy12983 540 LYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP-----KRRQTMLFSATTTAK---------------------T-ETLT 592 (838)
Q Consensus 540 ~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~-----~~~qil~lSAT~~~~---------------------~-~~l~ 592 (838)
+|++++++|+||+|+|.+.|...++..+++.+. ..+|.+.||||++-. . ..+.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 578999999999999999998888888887765 357999999998621 1 1244
Q ss_pred HHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 593 KLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 593 ~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
..+++..|.++.+.+ .......+....+.|+..+|...++.++...+ +++|||||+++.+.+++-+|+.+++....+
T Consensus 417 ~ig~~~kpkiiD~t~--q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTP--QSATASTLTESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HhCccCCCeeEecCc--chhHHHHHHHHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 456776777766654 33444556666777887777777777776665 489999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
|+.|.+.+|.+.+++|++....||+|||+++||+|||+|.+||||..|.+.+-|+||.||++|+ +..|..++++.|.+.
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA-~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA-NSEGVSVMLCGPQEV 572 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc-cCCCeEEEEeChHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999998
Q ss_pred HHHHHHH
Q psy12983 753 GFLRYLK 759 (838)
Q Consensus 753 ~~~~~l~ 759 (838)
..+..|-
T Consensus 573 ~~~~KL~ 579 (731)
T KOG0347|consen 573 GPLKKLC 579 (731)
T ss_pred HHHHHHH
Confidence 8887774
No 27
>KOG0341|consensus
Probab=100.00 E-value=5.2e-50 Score=411.94 Aligned_cols=350 Identities=32% Similarity=0.557 Sum_probs=306.5
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhc----cCCCCCCc
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNL----KFMPRNGT 469 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~----~~~~~~~~ 469 (838)
.+|.++. ++..+++.|++.|+..|||+|.+.+|.+++|+|.|-.|-||||||++|++|++-..+.. ......|+
T Consensus 170 ksF~eMK--FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 170 KSFKEMK--FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhcc--CCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 5688887 88999999999999999999999999999999999999999999999999998765543 33456788
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhc------CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCC
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYH------HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKN 543 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~------~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~ 543 (838)
-.|||||+|+||.|.++.+..+.... ..+..++.||....++...++.+.+|+|+|||+|.+.+.... ..++-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~-~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI-MSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh-ccHHH
Confidence 99999999999999999988876543 356677899999999999999999999999999999888764 66788
Q ss_pred ceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEE
Q psy12983 544 LQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVV 623 (838)
Q Consensus 544 l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~ 623 (838)
.+++.+||||++.++||..+++.+...+...+|.++||||++.....++...+- .|+.+.+....... -++.|..-+
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALV-KPvtvNVGRAGAAs--ldViQevEy 403 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALV-KPVTVNVGRAGAAS--LDVIQEVEY 403 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcc-cceEEecccccccc--hhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998885 78887776543222 112222233
Q ss_pred CCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCc
Q psy12983 624 CPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAA 703 (838)
Q Consensus 624 ~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~ 703 (838)
+..+.|...+++-+.+.. .+++|||..+.+++.++++|--.|..+..+||+-++++|...++.|+.|+.+||||||+++
T Consensus 404 VkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred HHhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 445566667766665544 4899999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 704 RGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 704 ~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
.|+|+|++.+|||||+|..++.|+||+||+||. |++|.+..|++...
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRs-g~~GiATTfINK~~ 529 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRS-GKTGIATTFINKNQ 529 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCC-CCcceeeeeecccc
Confidence 999999999999999999999999999999998 89999999998743
No 28
>KOG0332|consensus
Probab=100.00 E-value=7e-49 Score=403.40 Aligned_cols=360 Identities=27% Similarity=0.457 Sum_probs=312.3
Q ss_pred CCCCCccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCC
Q psy12983 388 PSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMP 465 (838)
Q Consensus 388 ~~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~ 465 (838)
.+..+..+|++|. |.+++++++..|+|+.|+.+|..++|.++.. ++.|.++..|+|||.||++.++..+...
T Consensus 84 sPlyS~ksFeeL~--LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 84 SPLYSAKSFEELR--LKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCccccccHHhhC--CCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 3456778999998 9999999999999999999999999999986 8999999999999999999999876431
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCce
Q psy12983 466 RNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQ 545 (838)
Q Consensus 466 ~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~ 545 (838)
-..+++++|+||++||.|+.+.+.+.+++.+++......+..... -..+ ...|+|+||+.+.+++..-+.+.++.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHHHhhChhhce
Confidence 346788999999999999999999999988777776666541110 0011 1489999999999999886677889999
Q ss_pred EEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEEC
Q psy12983 546 CLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC 624 (838)
Q Consensus 546 lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 624 (838)
.+|+||||.+.+. ||++.-..|...+|++.|+++||||....+..++...++ ++..+.+.. +...+.++.++|+.|
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivp-n~n~i~Lk~--eel~L~~IkQlyv~C 311 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVP-NANVIILKR--EELALDNIKQLYVLC 311 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcC-CCceeeeeh--hhccccchhhheeec
Confidence 9999999987764 699999999999999999999999999999999998886 454444443 345667889999998
Q ss_pred Cc-hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCc
Q psy12983 625 PS-EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAA 703 (838)
Q Consensus 625 ~~-~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~ 703 (838)
+. ++|...+.++.....-++.||||.|++++.+++..+++.|+.|..+||+|...+|..++++|+.|+.+|||+|++++
T Consensus 312 ~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 86 56888888877777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCC------CHHHHHHHhcccCcCCCCccEEEEEeccCc-hHHHHHHHH
Q psy12983 704 RGLDIPAVDWIVQYDPPD------DPKEYIHRVGRTARGEGSSGHALLILRPEE-LGFLRYLKQ 760 (838)
Q Consensus 704 ~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e-~~~~~~l~~ 760 (838)
||||++.|++|||||+|. +.++|+||+||+||. |++|.++.|+..++ ...+..+++
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRF-GkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRF-GKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccc-cccceEEEeecccCcHHHHHHHHH
Confidence 999999999999999994 899999999999997 99999999988744 555556654
No 29
>KOG0339|consensus
Probab=100.00 E-value=2.9e-48 Score=411.18 Aligned_cols=360 Identities=34% Similarity=0.527 Sum_probs=324.0
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC-CCCCCcE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGTG 470 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~-~~~~~~~ 470 (838)
..+.|+.++ +++.+..++.+..|.+|||+|.+++|..+.|+|++-.|-||||||.+|+.|++.++...+. .+.+++.
T Consensus 221 pvtsfeh~g--fDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 221 PVTSFEHFG--FDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CcchhhhcC--chHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 346788887 8999999999999999999999999999999999999999999999999999998876543 3478899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
.+|+|||++||.|++.+++++++..++++.+++||.+..++...+..++.|||||||||++++.... .++.++.++|||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa-tn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA-TNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc-ccceeeeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999988764 677999999999
Q ss_pred CCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch-hH
Q psy12983 551 EADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-KR 629 (838)
Q Consensus 551 Eah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~k 629 (838)
|+++|+++||...++.|...+++++|.++||||....++.+++..+. .|+.+..... ......+.|.+.+|+++ .|
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~-dpVrvVqg~v--gean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILS-DPVRVVQGEV--GEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhc-CCeeEEEeeh--hccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999885 6666554432 23335567777777664 45
Q ss_pred HHHHHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCC
Q psy12983 630 FLLLFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDI 708 (838)
Q Consensus 630 ~~~l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDi 708 (838)
..-++..|.. ...+++|||+..+.+++.++..|.-.++++..+||+|.+.+|.+++.+|+++...|||+||++++|+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 6555555544 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 709 PAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 709 p~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
|++..||+||+-.+++.|.||+||+||+ |.+|.+|.++.++|..+.-.|
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRa-g~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRA-GEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccc-cccceeeEEechhhHHHhhHH
Confidence 9999999999999999999999999998 888999999999997765444
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-46 Score=444.98 Aligned_cols=348 Identities=19% Similarity=0.217 Sum_probs=274.1
Q ss_pred ccchhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 393 STQFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
...|...+.+++..+...+.. |||..++|.|.++|+.++.|+|+++++|||+|||+||++|++.. +..+
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiT 503 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGIT 503 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcE
Confidence 344665555588888877777 99999999999999999999999999999999999999999853 4579
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh------cCCcEEEcChHHHHH--HHhcC-ccc-cc
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA------KGINIIVATPGRLLD--HLQNT-PEF-LY 541 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~------~~~~IvV~Tp~~l~~--~l~~~-~~~-~~ 541 (838)
|||+|+++|++++...+.. .++....+.++....++...+. ..++|+|+|||++.. .+... ..+ ..
T Consensus 504 LVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 9999999999977666554 3677788888877666554443 358999999999852 11111 111 12
Q ss_pred CCceEEEEeCCCcccccC--cHHHHHHH--HHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccce
Q psy12983 542 KNLQCLIIDEADRILDIG--FEEDMKQI--VNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGL 617 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g--f~~~~~~i--l~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l 617 (838)
..+.+|||||||++++|| |++.+..+ +....+.++++++|||++..+.......+......+...... ..++
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~----RpNL 655 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN----RPNL 655 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC----ccce
Confidence 458999999999999998 88888764 334445788999999999887765444443222222111111 1122
Q ss_pred eeEEEECCchh-HHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceE
Q psy12983 618 EQGYVVCPSEK-RFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGI 695 (838)
Q Consensus 618 ~~~~~~~~~~~-k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~V 695 (838)
.|.+.+... ....+..++... ...+.||||++++.++.+++.|+..|+.+..|||+|++.+|..++++|.+|+++|
T Consensus 656 --~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 656 --WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred --EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 233333322 244566666543 4668999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc
Q psy12983 696 LLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 696 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
||||+++++|||+|+|++||||++|.+++.|+||+|||||. |..|.|++|+...|...++.+.+.
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRD-G~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD-GQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCC-CCCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999996 899999999999998888877754
No 31
>KOG0350|consensus
Probab=100.00 E-value=2.3e-47 Score=405.19 Aligned_cols=352 Identities=32% Similarity=0.516 Sum_probs=299.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLE---------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~---------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
+...+.+.+.++++....|+|..++|.++. .+|+.|.||||||||++|.+|+++.+.... -+.-+++|
T Consensus 144 lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~---v~~LRavV 220 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP---VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC---ccceEEEE
Confidence 445566778899999999999999999863 489999999999999999999999986632 24578999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcC-----CcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKG-----INIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~-----~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
|+||++|+.|++++|+++....+..|+.+.|..+...+...+.+. .||+|+|||||.+|+.+.+.+.+++++++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 999999999999999999999999999999999988888877653 489999999999999999899999999999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCC----------------------------------ccceEEEEeeecccchHHHHHH
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLP----------------------------------KRRQTMLFSATTTAKTETLTKL 594 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~----------------------------------~~~qil~lSAT~~~~~~~l~~~ 594 (838)
|||||++++..|..++-.++..+. +..+.+.+|||+......+...
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999998776665544433321 1234788999998888888887
Q ss_pred HccCCCeEEEec--CccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhh----cCCCC
Q psy12983 595 ALKKEPVYIGVD--DTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLN----YIDLP 668 (838)
Q Consensus 595 ~l~~~~~~i~~~--~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~----~~~~~ 668 (838)
.+. .|....+. .......+..+.+.++.+....+-..++..++.....++|+|+++...+.+++..|. .....
T Consensus 381 ~l~-~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 381 TLH-IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred hcC-CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 775 34332222 223455667777888888888889999999999999999999999999999999887 33667
Q ss_pred eEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 669 VMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 669 v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
+..+.|+++.+.|.+.+++|..|++++|||+|+++||+|+.+++.||+||+|.+..+|+||+||++|+ |+.|+|+.++.
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARA-gq~G~a~tll~ 538 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARA-GQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccc-cCCceEEEeec
Confidence 88899999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cCchHHHHHHH
Q psy12983 749 PEELGFLRYLK 759 (838)
Q Consensus 749 ~~e~~~~~~l~ 759 (838)
.++...+..+.
T Consensus 539 ~~~~r~F~klL 549 (620)
T KOG0350|consen 539 KHEKRLFSKLL 549 (620)
T ss_pred cccchHHHHHH
Confidence 87766554443
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.2e-46 Score=445.64 Aligned_cols=358 Identities=17% Similarity=0.217 Sum_probs=274.3
Q ss_pred hhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 396 FEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 396 f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
+..++..+++++.++|.++||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+.+ ..+.++|||+
T Consensus 14 ~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-----~~~~~aL~l~ 88 (742)
T TIGR03817 14 TAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-----DPRATALYLA 88 (742)
T ss_pred cCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----CCCcEEEEEc
Confidence 33444458999999999999999999999999999999999999999999999999999999865 3467899999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC-c--ccccCCceEEEEeCC
Q psy12983 476 PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT-P--EFLYKNLQCLIIDEA 552 (838)
Q Consensus 476 Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-~--~~~~~~l~lvViDEa 552 (838)
||++|+.|+.+.++++. ..++.+..+.|+... .+...+.++++|+|+||+++...+... . ...++++++|||||+
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999986 346677777777664 445667778999999999997543321 1 123689999999999
Q ss_pred CcccccCcHHHHHHHHHH-------CCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC
Q psy12983 553 DRILDIGFEEDMKQIVNL-------LPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP 625 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~-------l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 625 (838)
|++.+. |+..+..++.. .+.+.|++++|||+++..+. ....+. .+..+ +..... ...........+
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~g-~~~~~-i~~~~~---~~~~~~~~~~~p 239 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLIG-APVVA-VTEDGS---PRGARTVALWEP 239 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHcC-CCeEE-ECCCCC---CcCceEEEEecC
Confidence 999763 77665554443 35678999999999987654 333333 33332 222111 111111111111
Q ss_pred -----------------chhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--------CCCeEEecCCCChhH
Q psy12983 626 -----------------SEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--------DLPVMCIHGKQKQMK 680 (838)
Q Consensus 626 -----------------~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--------~~~v~~lhg~m~~~~ 680 (838)
...+...+..+++. +.++||||+|++.++.++..|++. +.++..+||++++++
T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 240 PLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred CccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 11334445555543 569999999999999999988753 567889999999999
Q ss_pred HHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEecc--CchHHHHHH
Q psy12983 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP--EELGFLRYL 758 (838)
Q Consensus 681 R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~--~e~~~~~~l 758 (838)
|.+++++|++|++++||||+++++|||+|++++||+|+.|.+..+|+||+|||||. |+.|.++++... .|..+++..
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~-G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRR-GQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCC-CCCcEEEEEeCCChHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999997 899999999864 455455544
Q ss_pred HH-cCCCCccccc
Q psy12983 759 KQ-AKIPLNEFEF 770 (838)
Q Consensus 759 ~~-~~~~~~~~~~ 770 (838)
++ .+.+++...+
T Consensus 397 ~~~~~~~~e~~~~ 409 (742)
T TIGR03817 397 EALFDRPVEATVF 409 (742)
T ss_pred HHHhcCCCcccee
Confidence 32 2344444433
No 33
>KOG0327|consensus
Probab=100.00 E-value=2.9e-47 Score=395.97 Aligned_cols=366 Identities=31% Similarity=0.508 Sum_probs=333.1
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ |.+.+++.+..+||++|+.+|+.||..+.+|.|+++++++|+|||.+|.+++++.+.. +....++++
T Consensus 26 dsfddm~--L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~----~~ke~qali 99 (397)
T KOG0327|consen 26 DSFDDMN--LKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM----SVKETQALI 99 (397)
T ss_pred hhhhhcC--CCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc----chHHHHHHH
Confidence 3699998 9999999999999999999999999999999999999999999999999999998632 345678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHH-hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKL-AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l-~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
++||++||+|+......++...+..+..+.||.+...+...+ ...++|+++||+++.+.+... .+..+.++++|+||+
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecch
Confidence 999999999999999999998899999999988877555444 446899999999999988877 466688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|.++..||.+.+..+...++++.|++++|||.+..+..+.....+ +|..+.+.... .....++++|+....+.|+..
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~-~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~ 255 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMR-EPVRILVKKDE--LTLEGIKQFYINVEKEEKLDT 255 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhcc-CceEEEecchh--hhhhheeeeeeeccccccccH
Confidence 999999999999999999999999999999999999999999886 78887776544 567889999999888889999
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
++.+.+ .-.+.+||||+++.+..+...|...+..+..+||.|.+.+|..++++|+.|..+|||+|+.+++|+|+.++.
T Consensus 256 l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 256 LCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 999988 566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCccccccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFEFSW 772 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~~~~ 772 (838)
.||+|++|...++|+||+||+||. |++|.++.++..++...++.+++ .+.++++.+...
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~-grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRF-GRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeeeccccchhhhhhhccccccc-CCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 999999999999999999999997 99999999999999999988876 467777766543
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.2e-45 Score=421.79 Aligned_cols=327 Identities=21% Similarity=0.285 Sum_probs=257.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
|||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------DGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------CCcEEEEecHHHHHHHHHHHHHHc--
Confidence 89999999999999999999999999999999999999999752 456899999999999999888753
Q ss_pred hcCCeEEEEeCCcchHHHHH---HH-hcCCcEEEcChHHHHHHHhcCccc-ccCCceEEEEeCCCcccccC--cHHHHHH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQ---KL-AKGINIIVATPGRLLDHLQNTPEF-LYKNLQCLIIDEADRILDIG--FEEDMKQ 566 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~---~l-~~~~~IvV~Tp~~l~~~l~~~~~~-~~~~l~lvViDEah~l~~~g--f~~~~~~ 566 (838)
++....+.++....+... .+ ...++|+++||+++.........+ ...++++|||||||++++|| |+..+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 566677777665543322 22 234899999999975422111111 35789999999999999998 7777766
Q ss_pred HH--HHCCccceEEEEeeecccchHHHHHHHcc-CCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHH-hcCC
Q psy12983 567 IV--NLLPKRRQTMLFSATTTAKTETLTKLALK-KEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK-KNRK 642 (838)
Q Consensus 567 il--~~l~~~~qil~lSAT~~~~~~~l~~~~l~-~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~-~~~~ 642 (838)
+. ....++.+++++|||+++.+.......+. ..+...... ... .++.. .+..........+..++. ...+
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r----~nl~~-~v~~~~~~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDR----PNLYY-EVRRKTPKILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCC----CCcEE-EEEeCCccHHHHHHHHHHHhcCC
Confidence 52 22335788999999999876554433332 233332221 111 11211 111122234556666666 4456
Q ss_pred CeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCC
Q psy12983 643 KKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDD 722 (838)
Q Consensus 643 ~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s 722 (838)
+++||||+++++++.+++.|++.++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|++++||||++|.+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCC
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc
Q psy12983 723 PKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 723 ~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
.+.|+||+|||||. |..|.|++|+.+.|...++.+...
T Consensus 307 ~~~y~Qr~GRaGR~-G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 307 MESYYQESGRAGRD-GLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HHHHHhhhcCcCCC-CCCceEEEEechhHHHHHHHHHhc
Confidence 99999999999996 899999999999999888888654
No 35
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.5e-46 Score=439.22 Aligned_cols=403 Identities=19% Similarity=0.242 Sum_probs=343.4
Q ss_pred CCCCCCCCcchhhhcccccccCCCCceeeccCCCCCCCCCCCCCCCCcchhhhhhhhhccCCCCCccccccccccccccC
Q psy12983 307 PDFSTTPLETKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLS 386 (838)
Q Consensus 307 p~~s~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~ 386 (838)
+.+.+.-+++.+..+..++| +.++|+.+ |..++|.++.+.+++|....+..|+|.++++..|...+..
T Consensus 483 GIGrflgl~tl~~~g~~~dy------L~l~Ya~~------dkLyVPVeql~lisrY~g~~~~~p~L~kLG~~~W~k~K~K 550 (1139)
T COG1197 483 GIGRFLGLETLEVGGIERDY------LELEYAGE------DKLYVPVEQLHLISRYVGASDEAPKLHKLGGGAWKKAKAK 550 (1139)
T ss_pred CceeeeeeEEEecCCCccce------EEEEEcCC------CeEEEEHHHhhHHhhccCCCCCCccccccCcHHHHHHHHH
Confidence 33455566777777778899 99999765 5788999999999999999999999999999999988876
Q ss_pred cCCCC---------------CccchhhhcccCCHHHHHHHH-HCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCC
Q psy12983 387 IPSIL---------------SSTQFEALKGKVCENTLKAIA-DMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGS 444 (838)
Q Consensus 387 ~~~~~---------------~~~~f~~l~~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGs 444 (838)
....+ ....|.. +.+.++.+..+ .|+| ..|+.|..||..++++ +|.+|||+.|.
T Consensus 551 ~~~~v~diA~eLi~lyA~R~~~~G~af---~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGF 626 (1139)
T COG1197 551 ARKKVRDIAAELIKLYAKRQAKKGFAF---PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGF 626 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC---CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCC
Confidence 65543 1222222 13444455444 4999 8999999999999864 79999999999
Q ss_pred CchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh----cCCc
Q psy12983 445 GKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA----KGIN 520 (838)
Q Consensus 445 GKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~----~~~~ 520 (838)
|||.+|+.+++.++ .+|++|.|+|||+-||+|+++.|++++..+++++..++...+..++...+. +..|
T Consensus 627 GKTEVAmRAAFkAV-------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vD 699 (1139)
T COG1197 627 GKTEVAMRAAFKAV-------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVD 699 (1139)
T ss_pred cHHHHHHHHHHHHh-------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCcc
Confidence 99999999999998 558999999999999999999999999999999999999988887776553 3589
Q ss_pred EEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCC
Q psy12983 521 IIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEP 600 (838)
Q Consensus 521 IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~ 600 (838)
||||| ++++. +.+.|++++++||||.|+ |+...++-++.++.++.++.|||||.+++..|...+++ +.
T Consensus 700 IvIGT----HrLL~--kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiR-dl 767 (1139)
T COG1197 700 IVIGT----HRLLS--KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIR-DL 767 (1139)
T ss_pred EEEec----hHhhC--CCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcch-hh
Confidence 99999 33333 357789999999999999 99999999999999999999999999999999999997 77
Q ss_pred eEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCCh
Q psy12983 601 VYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQ 678 (838)
Q Consensus 601 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~ 678 (838)
..|.+++.++.+.. .++.+.+.....-....+..+++++.+.+|.+++++.+++.|+++ ..++++.||.|+.
T Consensus 768 SvI~TPP~~R~pV~------T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e 841 (1139)
T COG1197 768 SVIATPPEDRLPVK------TFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRE 841 (1139)
T ss_pred hhccCCCCCCcceE------EEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCH
Confidence 78877776655433 444555554444444445568999999999999999999999987 7889999999999
Q ss_pred hHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 679 MKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 679 ~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
.+.++++.+|.+|+++|||||++++.|||||++|++|..++.+ ++++++|..||+||. ++.++||+++++..
T Consensus 842 ~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS-~~~AYAYfl~p~~k 914 (1139)
T COG1197 842 RELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS-NKQAYAYFLYPPQK 914 (1139)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc-cceEEEEEeecCcc
Confidence 9999999999999999999999999999999999999999886 999999999999997 89999999999743
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.8e-45 Score=440.88 Aligned_cols=396 Identities=19% Similarity=0.235 Sum_probs=305.9
Q ss_pred chhhhcccccccCCCCceeeccCCCCCCCCCCCCCCCCcchhhhhhhhhccCCCCCccccccccccccccCcCCCCCccc
Q psy12983 316 TKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLSIPSILSSTQ 395 (838)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 395 (838)
+.+.....++| ++++++. .+...+|.++.+.+.+|....+..|+|.+.++..|...+......+....
T Consensus 349 ~~~~~g~~~dy------~~l~y~~------~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a 416 (926)
T TIGR00580 349 TLEVGGIERDY------LVLEYAG------EDKLYVPVEQLHLISRYVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIA 416 (926)
T ss_pred EEecCCcceeE------EEEEECC------CCEEEEEHHHcCceeeecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHH
Confidence 33333345677 8888762 34678999999999999877788999999999999988776654431100
Q ss_pred ------------hhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHHHH
Q psy12983 396 ------------FEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 396 ------------f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
-.....+.+..+.+.+.+ ++| +||++|.+||+.+.++ +|++++||||+|||++|++|++.
T Consensus 417 ~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~ 495 (926)
T TIGR00580 417 AKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFK 495 (926)
T ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHH
Confidence 000011234455555554 899 6999999999999875 79999999999999999999998
Q ss_pred HHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH---HHhc-CCcEEEcChHHHHHH
Q psy12983 457 LIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ---KLAK-GINIIVATPGRLLDH 532 (838)
Q Consensus 457 ~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~---~l~~-~~~IvV~Tp~~l~~~ 532 (838)
.+.. +.+++|++||++||.|+++.+++++...++.+..++|+.+..+... .+.. .++||||||..+
T Consensus 496 al~~-------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll--- 565 (926)
T TIGR00580 496 AVLD-------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL--- 565 (926)
T ss_pred HHHh-------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh---
Confidence 8743 6799999999999999999999998888888888888776544333 3333 589999999432
Q ss_pred HhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccc
Q psy12983 533 LQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEA 612 (838)
Q Consensus 533 l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~ 612 (838)
. ..+.+++++++||||+|+ |+...+..++.++.++|+++||||+.+++..+...+.+ ++..+...+....
T Consensus 566 -~--~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~-d~s~I~~~p~~R~- 635 (926)
T TIGR00580 566 -Q--KDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR-DLSIIATPPEDRL- 635 (926)
T ss_pred -h--CCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC-CcEEEecCCCCcc-
Confidence 2 235678999999999999 55566677777888899999999999887777666654 5555554433211
Q ss_pred cccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhc
Q psy12983 613 TVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCN 690 (838)
Q Consensus 613 ~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~ 690 (838)
.+..++.......-...+... ...+++++||||++++++.+++.|++. ++++..+||+|++.+|++++++|++
T Consensus 636 ---~V~t~v~~~~~~~i~~~i~~e--l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 636 ---PVRTFVMEYDPELVREAIRRE--LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---ceEEEEEecCHHHHHHHHHHH--HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 223222222211111122221 235689999999999999999999985 7889999999999999999999999
Q ss_pred CCceEEEEccCCccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEeccC
Q psy12983 691 AETGILLCTDVAARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILRPE 750 (838)
Q Consensus 691 g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~~~ 750 (838)
|+.+|||||+++++|+|+|++++||++++|. +.++|+||+||+||. |+.|+|++++.+.
T Consensus 711 Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~-g~~g~aill~~~~ 770 (926)
T TIGR00580 711 GEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS-KKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCC-CCCeEEEEEECCc
Confidence 9999999999999999999999999999976 788999999999996 8999999998653
No 37
>KOG0334|consensus
Probab=100.00 E-value=1.1e-45 Score=425.98 Aligned_cols=361 Identities=34% Similarity=0.555 Sum_probs=326.8
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhcc-CCCCCCcE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK-FMPRNGTG 470 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~-~~~~~~~~ 470 (838)
.-..|...+ ++..++..++++||..+|++|.+|||+|+.|+|+|.+|-||||||++|++|++.+....+ .....|+-
T Consensus 363 pv~sW~q~g--l~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 363 PVTSWTQCG--LSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred ccchHhhCC--chHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 457788888 999999999999999999999999999999999999999999999999999998765432 23356899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC--cccccCCceEEE
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT--PEFLYKNLQCLI 548 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~--~~~~~~~l~lvV 548 (838)
++|++||++|+.|+.++++.+....++.+.+.+|+....++...+++++.|+|||||++.+.+-.+ +..++.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999998877544 334567777999
Q ss_pred EeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC-ch
Q psy12983 549 IDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP-SE 627 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~ 627 (838)
+||||+|.+++|.+.+..|++.+++.+|++++|||.+..++.++...+. .|+.+.+. ........+.+.+.+++ ..
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~-~Pveiiv~--~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLK-KPVEIIVG--GRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEc--cceeEeccceEEEEEecCch
Confidence 9999999999999999999999999999999999999999999998887 77766655 34455667888888888 78
Q ss_pred hHHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 628 KRFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 628 ~k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
+|+..|..++... ..+++||||.....|..+.+.|.+.|+.+..+||+.++.+|..+++.|+++...+||||+++++|+
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 8999999998764 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
|++++.+|||||+|...++|+||.||+||+ |++|.|++|+.+++..+...|
T Consensus 678 dv~~l~Lvvnyd~pnh~edyvhR~gRTgra-grkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 678 DVKELILVVNYDFPNHYEDYVHRVGRTGRA-GRKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred ccccceEEEEcccchhHHHHHHHhcccccC-CccceeEEEeChHHhhhHHHH
Confidence 999999999999999999999999999998 899999999999666555444
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-44 Score=425.29 Aligned_cols=333 Identities=20% Similarity=0.297 Sum_probs=263.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 406 NTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 406 ~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
...+.|++ +||..++|+|+++++.+++|+|+++.+|||+|||++|++|++.. ...++||+|+++|+.|+
T Consensus 12 ~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 12 LAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHHHHHHH
Confidence 33455555 89999999999999999999999999999999999999999853 34689999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCcchHHHHHH---Hh-cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-
Q psy12983 485 FGVLKELMKYHHHTYGLIMGGASRQAEAQK---LA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG- 559 (838)
Q Consensus 485 ~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~---l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g- 559 (838)
.+.++.. ++....+.++.+....... +. ...+++++||+++....... .+...++++|||||||++.+||
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccC
Confidence 9888764 5666666666655443322 22 34799999999986322111 1233578999999999999998
Q ss_pred -cHHHHHHHHH--HCCccceEEEEeeecccchHHHHHHHcc-CCCeEEEecCccccccccceeeEEEECCchhHHHHHHH
Q psy12983 560 -FEEDMKQIVN--LLPKRRQTMLFSATTTAKTETLTKLALK-KEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFT 635 (838)
Q Consensus 560 -f~~~~~~il~--~l~~~~qil~lSAT~~~~~~~l~~~~l~-~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ 635 (838)
|++.+..+.. ...++.+++++|||++..+.......+. ..+.. ....... .++ .+.......+...+..
T Consensus 157 ~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~r----~nl--~~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFDR----PNI--RYTLVEKFKPLDQLMR 229 (607)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCCC----Ccc--eeeeeeccchHHHHHH
Confidence 7777665422 2235688999999999876553333222 22322 2221111 112 2333334455667777
Q ss_pred HHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE
Q psy12983 636 FLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV 715 (838)
Q Consensus 636 ~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI 715 (838)
++....++++||||+++++++.+++.|++.++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 230 ~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (607)
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE
Confidence 88878888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc
Q psy12983 716 QYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 716 ~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
|||+|.+.++|+||+|||||. |..|.|++|+++.|...++.+.+.
T Consensus 310 ~~d~P~s~~~y~Qr~GRaGR~-G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 310 HFDIPRNIESYYQETGRAGRD-GLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred EeCCCCCHHHHHHHhhhccCC-CCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999999999996 899999999999998888877654
No 39
>KOG0337|consensus
Probab=100.00 E-value=3.4e-45 Score=381.47 Aligned_cols=358 Identities=36% Similarity=0.542 Sum_probs=326.1
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
+..|..++ |+..+.+++.+.||..|||+|+.+||.+++++|++..+-||||||.||++|+++.+.... +.|.+++
T Consensus 20 ~g~fqsmg--L~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMG--LDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRAL 94 (529)
T ss_pred CCCccccC--CCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---cccccee
Confidence 46788888 999999999999999999999999999999999999999999999999999999986632 5678999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
+++||++|+.|..+..+++.+.......+++||.+..+++..+..++|||++||+++.+..-... +.++.+.+||+||+
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVEYVVFDEA 173 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-ccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999899999999999987655443 66789999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++.++||.+.+.+++..++...|.++||||++...-.+.+.++. +|..+.++.+. .....++..+..+...+|...
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~-~p~lVRldvet--kise~lk~~f~~~~~a~K~aa 250 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLV-PPVLVRLDVET--KISELLKVRFFRVRKAEKEAA 250 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCC-CCceEEeehhh--hcchhhhhheeeeccHHHHHH
Confidence 999999999999999999999999999999999998899999986 67777655432 333445666777888899999
Q ss_pred HHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc
Q psy12983 633 LFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV 711 (838)
Q Consensus 633 l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v 711 (838)
|+.++... ..++++||+.|..+++.+...|+..|+.+..+.|.|++..|..-..+|+.++..+||.|++++||+|+|-.
T Consensus 251 Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll 330 (529)
T KOG0337|consen 251 LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL 330 (529)
T ss_pred HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc
Confidence 99888765 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 712 DWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 712 ~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+.||+||+|.+...|+||+||+.|+ |+.|++|-++.+.+..++-.|..
T Consensus 331 dnvinyd~p~~~klFvhRVgr~ara-grtg~aYs~V~~~~~~yl~DL~l 378 (529)
T KOG0337|consen 331 DNVINYDFPPDDKLFVHRVGRVARA-GRTGRAYSLVASTDDPYLLDLQL 378 (529)
T ss_pred cccccccCCCCCceEEEEecchhhc-cccceEEEEEecccchhhhhhhh
Confidence 9999999999999999999999998 89999999999999888876653
No 40
>KOG4284|consensus
Probab=100.00 E-value=5.9e-45 Score=395.08 Aligned_cols=355 Identities=28% Similarity=0.430 Sum_probs=313.7
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
....|+.+. +..+++..|...+|..||++|..|||.++.++|+||++..|+|||++|...+++.+.. .....++
T Consensus 23 ~~~~fe~l~--l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----~~~~~q~ 96 (980)
T KOG4284|consen 23 CTPGFEQLA--LWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----RSSHIQK 96 (980)
T ss_pred CCCCHHHHH--HHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc----ccCccee
Confidence 346799998 9999999999999999999999999999999999999999999999999999887643 2456789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
+|++|||++|.|+.+++..++..+ +..+....||+.......+++ .++|+||||||+.++..... ++...++++|+|
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~-~n~s~vrlfVLD 174 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGA-MNMSHVRLFVLD 174 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcC-CCccceeEEEec
Confidence 999999999999999999988755 889999999998877666654 46899999999999888764 778999999999
Q ss_pred CCCcccccC-cHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch--
Q psy12983 551 EADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-- 627 (838)
Q Consensus 551 Eah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-- 627 (838)
|||.+.+.+ |...+..|++.+|..+|++++|||.+....++...+++ +|..+.... ....+-+++|+++.....
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mr-dp~lVr~n~--~d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMR-DPALVRFNA--DDVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhc-ccceeeccc--CCceeechhheeeeccCCcc
Confidence 999999855 99999999999999999999999999999998888886 676666554 345567788887765542
Q ss_pred ------hHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC
Q psy12983 628 ------KRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV 701 (838)
Q Consensus 628 ------~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~ 701 (838)
.|...|-.+++..+-.+.||||+....|+-++..|..-|+.+.++.|.|++.+|..+++.+++-..+|||+||.
T Consensus 252 sveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDL 331 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDL 331 (980)
T ss_pred hHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecch
Confidence 36677777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch-HHHHHH
Q psy12983 702 AARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL-GFLRYL 758 (838)
Q Consensus 702 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~-~~~~~l 758 (838)
.+||||-+++++|||.|+|.+..+|.||||||||. |..|.++.|+..++. +-+..+
T Consensus 332 taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRF-G~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 332 TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRF-GAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhccCCccccceEEecCCCcchHHHHHHhhhcccc-cccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999997 899999999877443 444333
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.7e-44 Score=420.27 Aligned_cols=330 Identities=21% Similarity=0.359 Sum_probs=265.6
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 409 KAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 409 ~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
+.|++ |||.+++|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHH
Confidence 34555 99999999999999999999999999999999999999999842 34689999999999999988
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHH---H-hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--cH
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQK---L-AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG--FE 561 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g--f~ 561 (838)
++.+ ++.+..+.++.+..+.... + .+..+|+++||+++....... .....++++|||||||++++|| |+
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccH
Confidence 8874 5677777777665543322 2 346899999999986432211 1334689999999999999988 88
Q ss_pred HHHHHHHH---HCCccceEEEEeeecccchHHHHHHHccC-CCeEEEecCccccccccceeeEEEECCchhHHHHHHHHH
Q psy12983 562 EDMKQIVN---LLPKRRQTMLFSATTTAKTETLTKLALKK-EPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFL 637 (838)
Q Consensus 562 ~~~~~il~---~l~~~~qil~lSAT~~~~~~~l~~~~l~~-~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l 637 (838)
+.+..+.. .++ +.+++++|||++..+.......+.. .+..+ ...... .++ .+.......+...+..++
T Consensus 148 p~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r----~nl--~~~v~~~~~~~~~l~~~l 219 (591)
T TIGR01389 148 PEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF-ITSFDR----PNL--RFSVVKKNNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCCC----CCc--EEEEEeCCCHHHHHHHHH
Confidence 87776543 333 4569999999998876654444322 22222 111111 112 233334455677788888
Q ss_pred HhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEe
Q psy12983 638 KKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 638 ~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~ 717 (838)
....+.++||||++++.++.+++.|+..++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||||
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 87778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcC
Q psy12983 718 DPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAK 762 (838)
Q Consensus 718 d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~ 762 (838)
++|.+.++|+|++|||||. |..|.|++++++.|...++.+.+..
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~-G~~~~~il~~~~~d~~~~~~~i~~~ 343 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRD-GLPAEAILLYSPADIALLKRRIEQS 343 (591)
T ss_pred CCCCCHHHHhhhhccccCC-CCCceEEEecCHHHHHHHHHHHhcc
Confidence 9999999999999999995 8999999999999998888887654
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.5e-44 Score=437.81 Aligned_cols=392 Identities=18% Similarity=0.217 Sum_probs=306.9
Q ss_pred chhhhcccccccCCCCceeeccCCCCCCCCCCCCCCCCcchhhhhhhhhccCCCCCccccccccccccccCcCCCC----
Q psy12983 316 TKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLSIPSIL---- 391 (838)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~---- 391 (838)
+.+.....++| ++++++. .+...+|.++.+.+.+|....+..|+|.+.++..|...+......+
T Consensus 498 ~~~~~g~~~~~------~~l~y~~------~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a 565 (1147)
T PRK10689 498 TLEAGGIKGEY------LMLTYAN------DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 (1147)
T ss_pred EEecCCcceeE------EEEEECC------CCeEEeeHHHhCcEeeecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHH
Confidence 33333345667 7888732 3467899999999999987778899999999999998876655543
Q ss_pred -----------CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHH
Q psy12983 392 -----------SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 392 -----------~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~ 454 (838)
....+.. + +.+.+..+...+++| .||+.|+++|+.++++ +|++++||||+|||++|+.++
T Consensus 566 ~~l~~~~a~r~~~~~~~~-~-~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa 642 (1147)
T PRK10689 566 AELLDIYAQRAAKEGFAF-K-HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 (1147)
T ss_pred HHHHHHHHHHhhccCCCC-C-CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHH
Confidence 1111111 1 234566666777999 8999999999999987 899999999999999999998
Q ss_pred HHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh----cCCcEEEcChHHHH
Q psy12983 455 VELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA----KGINIIVATPGRLL 530 (838)
Q Consensus 455 l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~----~~~~IvV~Tp~~l~ 530 (838)
+..+. .+.+++|++||++||.|+++.+++++...++.+..++++.+..++...+. +.++|+||||+.+.
T Consensus 643 ~~~~~-------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~ 715 (1147)
T PRK10689 643 FLAVE-------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ 715 (1147)
T ss_pred HHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh
Confidence 87763 47899999999999999999999988777888888888877766654432 35899999997442
Q ss_pred HHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccc
Q psy12983 531 DHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKE 610 (838)
Q Consensus 531 ~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~ 610 (838)
..+.+++++++||||+|++ +......++.++.++|+++||||+.+++..+...+++ ++..+...+...
T Consensus 716 ------~~v~~~~L~lLVIDEahrf-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~-d~~~I~~~p~~r 783 (1147)
T PRK10689 716 ------SDVKWKDLGLLIVDEEHRF-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMR-DLSIIATPPARR 783 (1147)
T ss_pred ------CCCCHhhCCEEEEechhhc-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCC-CcEEEecCCCCC
Confidence 1245688999999999995 3334566777888999999999999988888777775 666665544322
Q ss_pred cccccceeeEEEECCch-hHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHH
Q psy12983 611 EATVAGLEQGYVVCPSE-KRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQ 687 (838)
Q Consensus 611 ~~~~~~l~~~~~~~~~~-~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~ 687 (838)
. .+...+...... .+...+.. ..++++++||||+++.++.+++.|++. +.++..+||+|++.+|.+++.+
T Consensus 784 ~----~v~~~~~~~~~~~~k~~il~e---l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~ 856 (1147)
T PRK10689 784 L----AVKTFVREYDSLVVREAILRE---ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 (1147)
T ss_pred C----CceEEEEecCcHHHHHHHHHH---HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1 223222222221 12222222 234679999999999999999999987 7899999999999999999999
Q ss_pred HhcCCceEEEEccCCccCCCCCCccEEEEeCCC-CCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 688 FCNAETGILLCTDVAARGLDIPAVDWIVQYDPP-DDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 688 F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
|++|+.+|||||+++++|+|+|++++||..+++ .+..+|+||+||+||. |+.|+|++++.+
T Consensus 857 Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~-g~~g~a~ll~~~ 918 (1147)
T PRK10689 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS-HHQAYAWLLTPH 918 (1147)
T ss_pred HHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCC-CCceEEEEEeCC
Confidence 999999999999999999999999999977664 3788999999999996 899999999865
No 43
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.6e-42 Score=387.00 Aligned_cols=335 Identities=22% Similarity=0.330 Sum_probs=262.0
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 409 KAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 409 ~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
..|.+ |||..+++-|.++|..+++++|+++.+|||+||++||++|++-. ..-+|||+|..+|++++.+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CCCEEEECchHHHHHHHHHH
Confidence 45666 89999999999999999999999999999999999999999853 33789999999999999999
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHH---Hhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--cH
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQK---LAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG--FE 561 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~---l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g--f~ 561 (838)
++.. |+....+.+..+..+.... +.. ..++++-+||++..-.... .+.--.+.++|||||||+++|| |+
T Consensus 77 l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 77 LEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccC
Confidence 8886 4566666665554443332 223 4899999999985321111 1123568999999999999998 99
Q ss_pred HHHHHHHHHCC--ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC-chhHHHHHHHHHH
Q psy12983 562 EDMKQIVNLLP--KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP-SEKRFLLLFTFLK 638 (838)
Q Consensus 562 ~~~~~il~~l~--~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~k~~~l~~~l~ 638 (838)
+.+.++..... ++.+++++|||.++.+...+...+......+.....++ .++........ ...+...+.. ..
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~~~~~q~~fi~~-~~ 226 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKGEPSDQLAFLAT-VL 226 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcccHHHHHHHHHh-hc
Confidence 99988754432 27899999999999887766655543332121221111 11111111111 1222221111 12
Q ss_pred hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeC
Q psy12983 639 KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYD 718 (838)
Q Consensus 639 ~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d 718 (838)
....+..||||.|++.++.+++.|+..|+.+..|||+|+.++|+.+.++|.+++.+|+|||.++++|||.||+++|||||
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcCCC
Q psy12983 719 PPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIP 764 (838)
Q Consensus 719 ~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 764 (838)
+|.|+++|+|.+||||| +|..+.|++|+++.|....+++.+...+
T Consensus 307 lP~s~EsYyQE~GRAGR-DG~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 307 LPGSIESYYQETGRAGR-DGLPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred CCCCHHHHHHHHhhccC-CCCcceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999999999999 4999999999999999988888775443
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-41 Score=408.96 Aligned_cols=339 Identities=23% Similarity=0.278 Sum_probs=259.0
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.|++++ +++++++.+.+.||.+|+|+|.++++. +..|+|+++++|||||||++|.+|+++.+. .+.+++|
T Consensus 2 ~~~~l~--lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-------~~~kal~ 72 (737)
T PRK02362 2 KIAELP--LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-------RGGKALY 72 (737)
T ss_pred ChhhcC--CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-------cCCcEEE
Confidence 577887 999999999999999999999999998 778999999999999999999999999874 3678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++|+++|+.|+++.|+.+. ..+.++..++|+...... ....++|+|+||+++..++++.. ..++++++||+||+|
T Consensus 73 i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H 147 (737)
T PRK02362 73 IVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVH 147 (737)
T ss_pred EeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECcc
Confidence 9999999999999999764 347888888887654432 22457999999999998887654 336889999999999
Q ss_pred cccccCcHHHHHHHHHHC---CccceEEEEeeecccchHHHHHHHccC-----CCe--EEEecCccccccccceeeEEEE
Q psy12983 554 RILDIGFEEDMKQIVNLL---PKRRQTMLFSATTTAKTETLTKLALKK-----EPV--YIGVDDTKEEATVAGLEQGYVV 623 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l---~~~~qil~lSAT~~~~~~~l~~~~l~~-----~~~--~i~~~~~~~~~~~~~l~~~~~~ 623 (838)
++.+.+++..+..++..+ .++.|++++|||+++..+...|..... .|. ...+..... ..... .+....
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~-~~~~~-~~~~~~ 225 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGA-IHFDD-SQREVE 225 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCe-ecccc-ccccCC
Confidence 999888888888776554 467899999999986433333332110 010 000000000 00000 000111
Q ss_pred CCc-hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC------------------------------------C
Q psy12983 624 CPS-EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI------------------------------------D 666 (838)
Q Consensus 624 ~~~-~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~------------------------------------~ 666 (838)
... ......+...+. .++++||||++++.|+.+++.|... .
T Consensus 226 ~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 226 VPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 111 122222333332 5679999999999999988877542 1
Q ss_pred CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eC-----CCCCHHHHHHHhcccCcCC
Q psy12983 667 LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YD-----PPDDPKEYIHRVGRTARGE 737 (838)
Q Consensus 667 ~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~y~Qr~GRagR~~ 737 (838)
.+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.+
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 36899999999999999999999999999999999999999999999997 66 5789999999999999963
Q ss_pred -CCccEEEEEeccCc
Q psy12983 738 -GSSGHALLILRPEE 751 (838)
Q Consensus 738 -g~~g~~i~l~~~~e 751 (838)
+..|.+++++.+.+
T Consensus 384 ~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 384 LDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCceEEEEecCch
Confidence 23489999987653
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.1e-41 Score=408.78 Aligned_cols=345 Identities=19% Similarity=0.202 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC--CCCCcEEEEEcCCHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM--PRNGTGIIIISPTREL 480 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~--~~~~~~vlvl~Pt~~L 480 (838)
+++.+.+.+.+ +|..|||+|.++++.+++|+|++++||||||||++|++|+++.+...... ...+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 55666665555 78899999999999999999999999999999999999999988653211 1346789999999999
Q ss_pred HHHHHHHHHHHh-----------hhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc-cccCCceEE
Q psy12983 481 SMQTFGVLKELM-----------KYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE-FLYKNLQCL 547 (838)
Q Consensus 481 a~Q~~~~l~~~~-----------~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~~~~~l~lv 547 (838)
+.|+++.+.... ... ++.+...+|+.+..+....+.+.++|+|+||+++..++..... ..++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 999988765322 112 5677888999888777777778899999999999877755431 246899999
Q ss_pred EEeCCCcccccCcHHHHHHH----HHHCCccceEEEEeeecccchHHHHHHHcc-----CCCeEEEecCcccccccccee
Q psy12983 548 IIDEADRILDIGFEEDMKQI----VNLLPKRRQTMLFSATTTAKTETLTKLALK-----KEPVYIGVDDTKEEATVAGLE 618 (838)
Q Consensus 548 ViDEah~l~~~gf~~~~~~i----l~~l~~~~qil~lSAT~~~~~~~l~~~~l~-----~~~~~i~~~~~~~~~~~~~l~ 618 (838)
||||+|.+.+..++..+... ....+...|++++|||+++......+.... ..+..+ +...........+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~i-v~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEI-VDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEE-EccCCCccceEEEe
Confidence 99999999977666554443 333446789999999998743222222211 111111 11100000000000
Q ss_pred ---eEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcC------CCCeEEecCCCChhHHHHHHHH
Q psy12983 619 ---QGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYI------DLPVMCIHGKQKQMKRTTTFFQ 687 (838)
Q Consensus 619 ---~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~------~~~v~~lhg~m~~~~R~~i~~~ 687 (838)
..............+...+.. ...+++||||||++.++.++..|++. +..+..+||+|++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 000011111111222222222 23568999999999999999999873 4679999999999999999999
Q ss_pred HhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 688 FCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 688 F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
|++|+.+|||||+++++|||+|++++||+++.|.+..+|+||+||+||.+|..+.++++...
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999965555555555443
No 46
>KOG0344|consensus
Probab=100.00 E-value=3.8e-42 Score=374.80 Aligned_cols=373 Identities=29% Similarity=0.427 Sum_probs=307.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC-CCCCCcEEEEEcCCHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGTGIIIISPTRELS 481 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~-~~~~~~~vlvl~Pt~~La 481 (838)
.+..+++.+...+|..|+|.|.+++|.++.+++++.|+|||+|||++|.+|++..+..... ....|-+++|+.||++|+
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa 222 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELA 222 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHH
Confidence 5778889999999999999999999999999999999999999999999999999876432 224578999999999999
Q ss_pred HHHHHHHHHHh--hhcCCeEEEEeCCcch-HHHHHHHhcCCcEEEcChHHHHHHHhcCc-ccccCCceEEEEeCCCcccc
Q psy12983 482 MQTFGVLKELM--KYHHHTYGLIMGGASR-QAEAQKLAKGINIIVATPGRLLDHLQNTP-EFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 482 ~Q~~~~l~~~~--~~~~~~v~~l~gg~~~-~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-~~~~~~l~lvViDEah~l~~ 557 (838)
.|++.++.++. ...+............ ..........++|+++||-++..++.... .+.+..+.++|+||+|++.+
T Consensus 223 ~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe 302 (593)
T KOG0344|consen 223 AQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFE 302 (593)
T ss_pred HHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhC
Confidence 99999999987 3333333333322111 11112223357999999999998887753 45678999999999999999
Q ss_pred c-CcHHHHHHHHHHCC-ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEEC-CchhHHHHHH
Q psy12983 558 I-GFEEDMKQIVNLLP-KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC-PSEKRFLLLF 634 (838)
Q Consensus 558 ~-gf~~~~~~il~~l~-~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l~ 634 (838)
. +|..++..|+..+. ++..+-+||||.+..+++.+..... +...+.+...+ .....+.|..+.| ....|..++.
T Consensus 303 ~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~-~~~~vivg~~~--sa~~~V~QelvF~gse~~K~lA~r 379 (593)
T KOG0344|consen 303 PEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKS-DLKRVIVGLRN--SANETVDQELVFCGSEKGKLLALR 379 (593)
T ss_pred hhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhc-cceeEEEecch--hHhhhhhhhheeeecchhHHHHHH
Confidence 8 89999999887764 5678889999999999998887664 55555444332 2234555555555 4566888999
Q ss_pred HHHHhcCCCeEEEEecchhhHHHHHHHh-hcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccE
Q psy12983 635 TFLKKNRKKKVMVFFSSCMSVKFHHELL-NYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDW 713 (838)
Q Consensus 635 ~~l~~~~~~kvIIF~~t~~~~~~l~~~L-~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~ 713 (838)
.++...-..+++||+.+.+.|..++..| ..-++++.++||+.++.+|+.++++|+.|++.||+||++++||+|+.++++
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNL 459 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcce
Confidence 9999888889999999999999999999 566899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH----HHcCCCCccccccchhhHHHH
Q psy12983 714 IVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL----KQAKIPLNEFEFSWSKISDIQ 779 (838)
Q Consensus 714 VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l----~~~~~~~~~~~~~~~~l~~~~ 779 (838)
||+||.|.+..+|+||+||+||+ |+.|.||.||+..|..+++.+ ++.|-+++++......+....
T Consensus 460 VInyD~p~s~~syihrIGRtgRa-g~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k~~~~~ 528 (593)
T KOG0344|consen 460 VINYDFPQSDLSYIHRIGRTGRA-GRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKKLSRLK 528 (593)
T ss_pred EEecCCCchhHHHHHHhhccCCC-CCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhhhhhhh
Confidence 99999999999999999999998 899999999999998887655 457888888776665554443
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-40 Score=400.09 Aligned_cols=345 Identities=21% Similarity=0.262 Sum_probs=262.9
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.|++++ +++.+.+.+++.||..|+|+|.++++. +..|+|+++++|||||||++|.+|+++.+.. .+.+++|
T Consensus 2 ~~~~l~--l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~------~~~~~l~ 73 (720)
T PRK00254 2 KVDELR--VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR------EGGKAVY 73 (720)
T ss_pred cHHHcC--CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh------cCCeEEE
Confidence 477777 999999999999999999999999986 7889999999999999999999999988754 3568999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
|+|+++|+.|+++.++.+. ..+..+..++|+...... ..+.++|+|+||+++..+++... ..++++++||+||+|
T Consensus 74 l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H 148 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIH 148 (720)
T ss_pred EeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcC
Confidence 9999999999999998753 457888888888765432 23568999999999988877654 346899999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch--h---
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE--K--- 628 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~--- 628 (838)
++.+.+++..+..++..+..+.|++++|||+++. ..+... +.... +...............+.+...... .
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~w-l~~~~--~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEW-LNAEL--VVSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHH-hCCcc--ccCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 9999889999999999998899999999999864 333332 21111 1000000000000011111111111 1
Q ss_pred --HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhc---------------------------------CCCCeEEec
Q psy12983 629 --RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNY---------------------------------IDLPVMCIH 673 (838)
Q Consensus 629 --k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~---------------------------------~~~~v~~lh 673 (838)
....+...+. .++++||||+|++.++.++..|.. ...++.++|
T Consensus 225 ~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hH 302 (720)
T PRK00254 225 NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHH 302 (720)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeC
Confidence 1122333333 467999999999999887766632 123689999
Q ss_pred CCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE-------eCCCC-CHHHHHHHhcccCcCC-CCccEEE
Q psy12983 674 GKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ-------YDPPD-DPKEYIHRVGRTARGE-GSSGHAL 744 (838)
Q Consensus 674 g~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~y~Qr~GRagR~~-g~~g~~i 744 (838)
|+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|.||+|||||.+ +..|.++
T Consensus 303 agl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~i 382 (720)
T PRK00254 303 AGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAI 382 (720)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEE
Confidence 9999999999999999999999999999999999999999994 44443 6789999999999953 5679999
Q ss_pred EEeccCc-hHHHHHH
Q psy12983 745 LILRPEE-LGFLRYL 758 (838)
Q Consensus 745 ~l~~~~e-~~~~~~l 758 (838)
+++...+ ..+++.+
T Consensus 383 i~~~~~~~~~~~~~~ 397 (720)
T PRK00254 383 IVATTEEPSKLMERY 397 (720)
T ss_pred EEecCcchHHHHHHH
Confidence 9987755 3344433
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8e-40 Score=389.39 Aligned_cols=324 Identities=21% Similarity=0.315 Sum_probs=246.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 409 KAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 409 ~~l~~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
+....++| +||+.|+++++.+.++ ++++++||||||||++|++|++..+. .+.+++|++||++||.
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-------~g~q~lilaPT~~LA~ 324 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-------AGYQAALMAPTEILAE 324 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEeccHHHHH
Confidence 33445899 7999999999999886 58999999999999999999998873 4789999999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCcchHHH---HHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc
Q psy12983 483 QTFGVLKELMKYHHHTYGLIMGGASRQAE---AQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558 (838)
Q Consensus 483 Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~ 558 (838)
|+++.+++++...++.+..++|+.+..+. ...+.+ .++|+||||+.+.+ ...+++++++||||+|++
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf--- 395 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF--- 395 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh---
Confidence 99999999998888999999999875443 333444 49999999987743 234688999999999994
Q ss_pred CcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHH
Q psy12983 559 GFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK 638 (838)
Q Consensus 559 gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~ 638 (838)
+......+.......++++||||+.++...+...+.. ....+...+... ..+...+. ....+ ..++..+.
T Consensus 396 --g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~-~~s~i~~~p~~r----~~i~~~~~--~~~~~-~~~~~~i~ 465 (681)
T PRK10917 396 --GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDL-DVSVIDELPPGR----KPITTVVI--PDSRR-DEVYERIR 465 (681)
T ss_pred --hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC-ceEEEecCCCCC----CCcEEEEe--CcccH-HHHHHHHH
Confidence 3344444444455689999999998876655543221 222222111111 11222222 22222 22233332
Q ss_pred h--cCCCeEEEEecch--------hhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 639 K--NRKKKVMVFFSSC--------MSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 639 ~--~~~~kvIIF~~t~--------~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
. ..+.+++|||+.+ ..++.+++.|.+. ++++..+||+|++.+|+.++++|++|+.+|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 2 3567999999964 3456677777765 57899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEec-c---CchHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILR-P---EELGFLRYLKQ 760 (838)
Q Consensus 707 Dip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~-~---~e~~~~~~l~~ 760 (838)
|+|++++||++++|. +.++|+||+||+||+ |..|+|++++. + .....++.+.+
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~-g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRG-AAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCC-CCceEEEEEECCCCChhHHHHHHHHHH
Confidence 999999999999997 689999999999996 89999999995 3 23444555543
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3e-39 Score=375.73 Aligned_cols=337 Identities=20% Similarity=0.261 Sum_probs=274.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhc-cCCCCCCcEEEEEcCCHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNL-KFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~-~~~~~~~~~vlvl~Pt~~La 481 (838)
+++.+.+.+... |.+||+.|.+||+.+.+|+|+++.||||||||+++++|++..+.+. .....++..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888888887 9999999999999999999999999999999999999999999886 33445678999999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc-ccccCCceEEEEeCCCcccccCc
Q psy12983 482 MQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP-EFLYKNLQCLIIDEADRILDIGF 560 (838)
Q Consensus 482 ~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-~~~~~~l~lvViDEah~l~~~gf 560 (838)
.++...++.++...+..+...+|++...+..+...+.+||+|+|||.|.-++.... .-.++++++|||||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999988888888999999999999977666533 23478999999999999887665
Q ss_pred HHHHH----HHHHHCCccceEEEEeeecccchHHHHHHHccCCCe-EEEecCccccccccceeeEEEECCc---------
Q psy12983 561 EEDMK----QIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPV-YIGVDDTKEEATVAGLEQGYVVCPS--------- 626 (838)
Q Consensus 561 ~~~~~----~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~-~i~~~~~~~~~~~~~l~~~~~~~~~--------- 626 (838)
+..+. ++....+ +.|.+++|||..+..+...+......+. .+.+...+. ... .......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~-~~i-----~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKK-LEI-----KVISPVEDLIYDEELW 239 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCc-ceE-----EEEecCCccccccchh
Confidence 54443 3333344 7899999999996554444444432133 333322211 111 1111111
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCC-CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 627 EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYID-LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 627 ~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~-~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
......+..+++++. .++||+||+..++.++..|++.+ ..+..+||.++.++|..+.++|++|+.+++|||+.++-|
T Consensus 240 ~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 240 AALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 123444555555544 89999999999999999999986 899999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 706 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 706 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
||+.+++.||++..|++.+.+.||+||+|+.-+....++++...
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999965777788887666
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.9e-39 Score=382.25 Aligned_cols=314 Identities=21% Similarity=0.315 Sum_probs=238.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 407 TLKAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 407 l~~~l~~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+.+.+..++| +||+.|+++++.+.++ ++++++||||||||++|++|++..+. .+.+++|++||++|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------~g~qvlilaPT~~L 296 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------AGYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------cCCcEEEECCHHHH
Confidence 4455667999 8999999999999876 46899999999999999999998874 37789999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeCCcchHHH---HHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccc
Q psy12983 481 SMQTFGVLKELMKYHHHTYGLIMGGASRQAE---AQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 481 a~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~ 556 (838)
|.|+++.+++++...++.+..++|+.+..+. ...+.. .++|+|+||+.+.+ ...++++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 9999999999998889999999998876543 333333 48999999988753 2456889999999999953
Q ss_pred ccCcHHHHHH-HHHHCC--ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHH
Q psy12983 557 DIGFEEDMKQ-IVNLLP--KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLL 633 (838)
Q Consensus 557 ~~gf~~~~~~-il~~l~--~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l 633 (838)
. .... +..... ...++++||||+.++...+...+.. ....+...+... ..+...+ .....+ ..+
T Consensus 371 ~-----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l-~~~~i~~~p~~r----~~i~~~~--~~~~~~-~~~ 437 (630)
T TIGR00643 371 V-----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDL-DTSIIDELPPGR----KPITTVL--IKHDEK-DIV 437 (630)
T ss_pred H-----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCc-ceeeeccCCCCC----CceEEEE--eCcchH-HHH
Confidence 2 2222 222222 2678999999998865554432211 111111111111 1122222 222222 334
Q ss_pred HHHHHh--cCCCeEEEEecch--------hhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC
Q psy12983 634 FTFLKK--NRKKKVMVFFSSC--------MSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV 701 (838)
Q Consensus 634 ~~~l~~--~~~~kvIIF~~t~--------~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~ 701 (838)
+..+.. ..+.+++|||+.+ ..++.+++.|.+. +.++..+||+|++.+|..++++|++|+.+|||||++
T Consensus 438 ~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 438 YEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 444443 3567899999976 4466777777653 678999999999999999999999999999999999
Q ss_pred CccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 702 AARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 702 ~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
+++|+|+|++++||++++|. +.++|+||+||+||+ |..|+|++++.
T Consensus 518 ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~-g~~g~~il~~~ 564 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG-DHQSYCLLVYK 564 (630)
T ss_pred eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC-CCCcEEEEEEC
Confidence 99999999999999999997 789999999999996 89999999983
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-38 Score=380.70 Aligned_cols=351 Identities=19% Similarity=0.217 Sum_probs=255.9
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl 474 (838)
.|++++ +++.+++.+.+.+|+ ++++|.++++.+.+++++++++|||||||++|.+++++.+.. +.+++|+
T Consensus 2 ~~~~~~--l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------~~k~v~i 71 (674)
T PRK01172 2 KISDLG--YDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------GLKSIYI 71 (674)
T ss_pred cHhhcC--CCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-------CCcEEEE
Confidence 467777 999999999999995 999999999999999999999999999999999999988743 5689999
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 475 ~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
+|+++||.|+++.++++. ..+..+...+|+...... ..+.++|+|+||+++..++.++. ..++++++||+||+|+
T Consensus 72 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHI 146 (674)
T ss_pred echHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchh
Confidence 999999999999998754 457788888887654322 23467999999999988887764 3468999999999999
Q ss_pred ccccCcHHHHHHHHHH---CCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-hhHH
Q psy12983 555 ILDIGFEEDMKQIVNL---LPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRF 630 (838)
Q Consensus 555 l~~~gf~~~~~~il~~---l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~ 630 (838)
+.+.+++..+..++.. ++++.|++++|||+++. ..+.... .... +....................... ....
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl-~~~~--~~~~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWL-NASL--IKSNFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHh-CCCc--cCCCCCCCCeEEEEEecCeeeeccccccc
Confidence 9888787777776554 45678999999999864 3333321 1111 100000000000000000001111 1111
Q ss_pred HHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcC-------------------------CCCeEEecCCCChhHHHH
Q psy12983 631 LLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYI-------------------------DLPVMCIHGKQKQMKRTT 683 (838)
Q Consensus 631 ~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~-------------------------~~~v~~lhg~m~~~~R~~ 683 (838)
..+..++.. ..++++||||++++.++.+++.|.+. ..++.++||+|++++|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112233332 35679999999999999999888643 135889999999999999
Q ss_pred HHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC---------CCCHHHHHHHhcccCcCC-CCccEEEEEeccCc-h
Q psy12983 684 TFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP---------PDDPKEYIHRVGRTARGE-GSSGHALLILRPEE-L 752 (838)
Q Consensus 684 i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~---------p~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~e-~ 752 (838)
+++.|++|.++|||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.| +..|.+++++...+ .
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 99999999999999999999999999975555 332 458899999999999962 24677888866543 4
Q ss_pred HHHHHHH-HcCCCC
Q psy12983 753 GFLRYLK-QAKIPL 765 (838)
Q Consensus 753 ~~~~~l~-~~~~~~ 765 (838)
..++.+. ....|+
T Consensus 382 ~~~~~~l~~~~~pi 395 (674)
T PRK01172 382 DAAKKYLSGEPEPV 395 (674)
T ss_pred HHHHHHHcCCCCce
Confidence 4444443 344443
No 52
>KOG0329|consensus
Probab=100.00 E-value=7.3e-40 Score=320.68 Aligned_cols=323 Identities=29% Similarity=0.502 Sum_probs=281.7
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
.++.|.++- |.+++++++-+.||+.|+.+|.++||...-|+|++++|..|.|||.+|++..++.+.- ..+...+
T Consensus 40 hssgfrdfl--lkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep----v~g~vsv 113 (387)
T KOG0329|consen 40 HSSGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP----VDGQVSV 113 (387)
T ss_pred eccchhhhh--cCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC----CCCeEEE
Confidence 567898887 9999999999999999999999999999999999999999999999999999988743 2345678
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
+++|.||+||.|+.++..++.++. .+++...+||.+.......+.+.++|+|+|||+++.+.++. .+.+++++.+|+|
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLD 192 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehh
Confidence 999999999999999988888876 67889999999988888888889999999999999888776 4788999999999
Q ss_pred CCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 551 EADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 551 Eah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
|||.++++ ..+..+.++.+..|...|++.||||++...+.....++. +|..+.++++ ...++.++.|+|+...+.+|
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQ-dPmEi~vDdE-~KLtLHGLqQ~YvkLke~eK 270 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQ-DPMEIFVDDE-AKLTLHGLQQYYVKLKENEK 270 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhc-Cchhhhccch-hhhhhhhHHHHHHhhhhhhh
Confidence 99988765 477889999999999999999999999999999998886 6666666543 45678899999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
...+.+++....-.+++||+.++.... | ..+ +|||++++||+|+-
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdie 315 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIE 315 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcc
Confidence 999999998888889999998776510 2 123 89999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc-hHHHHHHH
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE-LGFLRYLK 759 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e-~~~~~~l~ 759 (838)
.++.++|||+|.+..+|.||.|||||. |.+|.++.|++.++ ...+..+.
T Consensus 316 rvNi~~NYdmp~~~DtYlHrv~rAgrf-Gtkglaitfvs~e~da~iLn~vq 365 (387)
T KOG0329|consen 316 RVNIVFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSDENDAKILNPVQ 365 (387)
T ss_pred cceeeeccCCCCCchHHHHHhhhhhcc-ccccceeehhcchhhHHHhchhh
Confidence 999999999999999999999999997 89999999998754 33444433
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.9e-38 Score=368.48 Aligned_cols=320 Identities=19% Similarity=0.174 Sum_probs=239.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGR-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~-dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.||+ |||+|.++++.++.|+ ++++++|||||||.++.++.+.. .. ......+.++++|||+|+.|+++.++++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---cccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5896 9999999999999998 67888999999999765555422 11 11223455668899999999999999988
Q ss_pred hhc-----------------------CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhc-C-----c--cc--
Q psy12983 493 KYH-----------------------HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQN-T-----P--EF-- 539 (838)
Q Consensus 493 ~~~-----------------------~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-~-----~--~~-- 539 (838)
+.. ++++..++||.+...++..+..+++|||+|++.+.+-... . . -+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~a 166 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHA 166 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchh
Confidence 754 4778889999999999999999999999996555322110 0 0 00
Q ss_pred -ccCCceEEEEeCCCcccccCcHHHHHHHHHHC--Ccc---ceEEEEeeecccchHHHHHHHccCCCeEEEecCcccccc
Q psy12983 540 -LYKNLQCLIIDEADRILDIGFEEDMKQIVNLL--PKR---RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT 613 (838)
Q Consensus 540 -~~~~l~lvViDEah~l~~~gf~~~~~~il~~l--~~~---~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~ 613 (838)
.+++++++|+|||| ++.+|...+..|++.+ ++. .|+++||||++.....+...... ++..+.+.. ....
T Consensus 167 g~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~i~V~~--~~l~ 241 (844)
T TIGR02621 167 GFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYKHPVLK--KRLA 241 (844)
T ss_pred hhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CCceeeccc--cccc
Confidence 25789999999999 6788999999999974 332 69999999999877777666553 444444322 1222
Q ss_pred ccceeeEEEECCchhHHHHHHHHH---HhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHH-----HHH
Q psy12983 614 VAGLEQGYVVCPSEKRFLLLFTFL---KKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRT-----TTF 685 (838)
Q Consensus 614 ~~~l~~~~~~~~~~~k~~~l~~~l---~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~-----~i~ 685 (838)
..++.+ ++..+...+...+...+ ....++++||||||++.++.+++.|++.++ ..+||+|++.+|. +++
T Consensus 242 a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il 318 (844)
T TIGR02621 242 AKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIF 318 (844)
T ss_pred ccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHH
Confidence 233344 33444444443333222 224567899999999999999999998776 8999999999999 889
Q ss_pred HHHhc----CC-------ceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 686 FQFCN----AE-------TGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 686 ~~F~~----g~-------~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
++|++ |+ ..|||||+++++||||+. ++||++..| .++|+||+||+||.|...+..+.++..
T Consensus 319 ~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 319 NRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99987 44 689999999999999986 888888776 689999999999973334444555533
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.3e-37 Score=376.29 Aligned_cols=306 Identities=21% Similarity=0.240 Sum_probs=226.0
Q ss_pred EEecCCCCchhhhHHHHHHHHHhccC------CCCCCcEEEEEcCCHHHHHHHHHHHHHHhh------------hcCCeE
Q psy12983 438 GSAKTGSGKTLAFLVPAVELIYNLKF------MPRNGTGIIIISPTRELSMQTFGVLKELMK------------YHHHTY 499 (838)
Q Consensus 438 v~apTGsGKTl~~~lp~l~~l~~~~~------~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~------------~~~~~v 499 (838)
|++|||||||++|.+|++..+..... ....+.++|||+|+++|+.|+.+.++.... ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999998875321 112467899999999999999998875321 236788
Q ss_pred EEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcH----HHHHHHHHHCCccc
Q psy12983 500 GLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFE----EDMKQIVNLLPKRR 575 (838)
Q Consensus 500 ~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~----~~~~~il~~l~~~~ 575 (838)
...+|+++..+..+.+.+.++|+|+|||+|..++.+.....++++++|||||+|.+.+..++ ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 89999998888777777889999999999988776543345799999999999999876433 45556666667789
Q ss_pred eEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH----------------H-----HHHH
Q psy12983 576 QTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR----------------F-----LLLF 634 (838)
Q Consensus 576 qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k----------------~-----~~l~ 634 (838)
|+|++|||+.+. +++........+..+...+.... ..+.. ++...+..+ . ....
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~---~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRH---PQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCcc---cceEE-EEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 999999999874 44444332223433322111111 11111 111111000 0 0111
Q ss_pred HHHHh-cCCCeEEEEecchhhHHHHHHHhhcCC---------------------------------CCeEEecCCCChhH
Q psy12983 635 TFLKK-NRKKKVMVFFSSCMSVKFHHELLNYID---------------------------------LPVMCIHGKQKQMK 680 (838)
Q Consensus 635 ~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~~---------------------------------~~v~~lhg~m~~~~ 680 (838)
.++.. ...+++||||||++.|+.++..|++.. ..+..|||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 22221 245789999999999999999997641 12568999999999
Q ss_pred HHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 681 R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
|..+++.|++|++++||||+.+++|||++++++||+++.|.+..+|+||+||+||..+..+.++++..
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999996455556664433
No 55
>KOG0352|consensus
Probab=100.00 E-value=1.8e-36 Score=315.86 Aligned_cols=334 Identities=21% Similarity=0.309 Sum_probs=254.0
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 406 NTLKAIAD-MGFTKM-TEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 406 ~l~~~l~~-~g~~~~-~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
.+.++|++ ||+..+ ++.|+.|+..+.+ .+|+.|++|||+||++||++|++-+ +..+||+.|..+|.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHH
Confidence 45677777 898765 8999999998765 4799999999999999999999864 347899999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHH------hcCCcEEEcChHHHH-----HHHhcCcccccCCceEEEEeC
Q psy12983 483 QTFGVLKELMKYHHHTYGLIMGGASRQAEAQKL------AKGINIIVATPGRLL-----DHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 483 Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l------~~~~~IvV~Tp~~l~-----~~l~~~~~~~~~~l~lvViDE 551 (838)
++.+.+..+ .+.+..+....+..+..+.+ +....+++.||++.. .+++.- ..-+.+.++|+||
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L--~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL--ANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH--hhhceeeeEEech
Confidence 999988886 33443444433433333322 234689999999753 222211 1225689999999
Q ss_pred CCcccccC--cHHHHHHHHHH--CCccceEEEEeeecccchHHHHH--HHccCCCe-EEEecCccccccccceeeEEEEC
Q psy12983 552 ADRILDIG--FEEDMKQIVNL--LPKRRQTMLFSATTTAKTETLTK--LALKKEPV-YIGVDDTKEEATVAGLEQGYVVC 624 (838)
Q Consensus 552 ah~l~~~g--f~~~~~~il~~--l~~~~qil~lSAT~~~~~~~l~~--~~l~~~~~-~i~~~~~~~~~~~~~l~~~~~~~ 624 (838)
||++++|| |++++..+-.. .-+.+..+++|||.++.+.+..- +.++ +|+ .+..+....+.-+...-...+
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~-~PVAiFkTP~FR~NLFYD~~~K~~I-- 226 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLR-NPVAIFKTPTFRDNLFYDNHMKSFI-- 226 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhc-CcHHhccCcchhhhhhHHHHHHHHh--
Confidence 99999998 99998876443 23468899999999998876444 4444 333 222222211111111100000
Q ss_pred CchhHHHHHHHHHHhc-------------CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC
Q psy12983 625 PSEKRFLLLFTFLKKN-------------RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA 691 (838)
Q Consensus 625 ~~~~k~~~l~~~l~~~-------------~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g 691 (838)
.+-...|.++.... ..+..||||.|++.|+.++-.|...|++...||+++...+|..+.+.|.++
T Consensus 227 --~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 227 --TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred --hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 12233444443321 246789999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc
Q psy12983 692 ETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 692 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
+..|++||..+++|+|.|+|++|||++.|.++..|.|..|||||. |...+|-++|+.+|...+++|.+.
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD-Gk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD-GKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC-CCccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999999995 999999999999999999998754
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.2e-35 Score=362.00 Aligned_cols=284 Identities=21% Similarity=0.288 Sum_probs=222.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|+ .|+++|..+++.++.|+|++++||||+|||. |.+++...+. ..+.+++||+||++|+.|+++.++.+..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~------~~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA------KKGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH------hcCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 688 8999999999999999999999999999996 4455444432 2478899999999999999999999998
Q ss_pred hcCCeEEEEeCCcc-----hHHHHHHHh-cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc----------
Q psy12983 494 YHHHTYGLIMGGAS-----RQAEAQKLA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD---------- 557 (838)
Q Consensus 494 ~~~~~v~~l~gg~~-----~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~---------- 557 (838)
..+..+..+.++.+ ..+....+. +.++|+|+||+++.+++.. +...+++++|+||||++++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHH
Confidence 88888777776653 223334444 3589999999999988762 4446799999999999986
Q ss_pred -cCcH-HHHHHHHHHCCc------------------------cceEEEEeeecccchHHHHHHHccCCCeEEEecCcccc
Q psy12983 558 -IGFE-EDMKQIVNLLPK------------------------RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEE 611 (838)
Q Consensus 558 -~gf~-~~~~~il~~l~~------------------------~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~ 611 (838)
.||. ..+..++..++. ..|++++|||.++..... ..++ +...+.+.. ..
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~-~ll~~~v~~--~~ 300 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFR-ELLGFEVGS--PV 300 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhh-ccceEEecC--cc
Confidence 5674 567777766654 679999999998753221 1111 222233322 22
Q ss_pred ccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhh---HHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHH
Q psy12983 612 ATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMS---VKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQF 688 (838)
Q Consensus 612 ~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~---~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F 688 (838)
....++.+.|+.++ ++...+..+++... .++||||++++. ++.+++.|+..|+++..+||+| .+.+++|
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 34566777777665 56666777776554 589999999888 9999999999999999999999 2345999
Q ss_pred hcCCceEEEE----ccCCccCCCCCC-ccEEEEeCCCC
Q psy12983 689 CNAETGILLC----TDVAARGLDIPA-VDWIVQYDPPD 721 (838)
Q Consensus 689 ~~g~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p~ 721 (838)
++|+++|||| |++++||||+|+ +++||||+.|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999996
No 57
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.5e-35 Score=331.95 Aligned_cols=325 Identities=23% Similarity=0.332 Sum_probs=257.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 408 LKAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 408 ~~~l~~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
.+.+...+| ++|..|++++..|..+ ++.+++|+.|||||++++++++.++ ..|.++..++||--||
T Consensus 253 ~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-------~~G~Q~ALMAPTEILA 324 (677)
T COG1200 253 AKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-------EAGYQAALMAPTEILA 324 (677)
T ss_pred HHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-------HcCCeeEEeccHHHHH
Confidence 344566899 9999999999999865 6899999999999999999999988 4589999999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeCCcchH---HHHHHHhcC-CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 482 MQTFGVLKELMKYHHHTYGLIMGGASRQ---AEAQKLAKG-INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 482 ~Q~~~~l~~~~~~~~~~v~~l~gg~~~~---~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
.|+++.+.+++...++.+..++|..... +....+.+| .+|+|||..-+ .. ...|+++.++|+||-||
T Consensus 325 ~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd--~V~F~~LgLVIiDEQHR--- 395 (677)
T COG1200 325 EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QD--KVEFHNLGLVIIDEQHR--- 395 (677)
T ss_pred HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hc--ceeecceeEEEEecccc---
Confidence 9999999999999999999999866543 334445555 99999993332 22 36689999999999999
Q ss_pred cCcHHHHHHHHHHCCc-cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHH
Q psy12983 558 IGFEEDMKQIVNLLPK-RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTF 636 (838)
Q Consensus 558 ~gf~~~~~~il~~l~~-~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~ 636 (838)
|+..-+..+..... .+.++.|||||.+++..+...+-- +...|.--+..+.+ + .....+. ++...+++.
T Consensus 396 --FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDl-dvS~IdElP~GRkp----I--~T~~i~~-~~~~~v~e~ 465 (677)
T COG1200 396 --FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDL-DVSIIDELPPGRKP----I--TTVVIPH-ERRPEVYER 465 (677)
T ss_pred --ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccc-cchhhccCCCCCCc----e--EEEEecc-ccHHHHHHH
Confidence 88887777777666 689999999999998888776653 33333222222211 1 1333333 334444445
Q ss_pred HHh--cCCCeEEEEecchhh--------HHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCcc
Q psy12983 637 LKK--NRKKKVMVFFSSCMS--------VKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAAR 704 (838)
Q Consensus 637 l~~--~~~~kvIIF~~t~~~--------~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 704 (838)
++. ..+.++.|.|+-+++ +...++.|+.. +.++..+||+|+.++++.++++|++|+.+|||||++++.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 543 377899999998654 45666667643 567999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEeccCc----hHHHHHHHH
Q psy12983 705 GLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILRPEE----LGFLRYLKQ 760 (838)
Q Consensus 705 GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e----~~~~~~l~~ 760 (838)
|||+||+++.|.+++-+ .+++++|..||+||+ +..++|++++.+.. ...++.+.+
T Consensus 546 GVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG-~~qSyC~Ll~~~~~~~~a~~RL~im~~ 605 (677)
T COG1200 546 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRG-DLQSYCVLLYKPPLSEVAKQRLKIMRE 605 (677)
T ss_pred cccCCCCeEEEEechhhhhHHHHHHhccccCCC-CcceEEEEEeCCCCChhHHHHHHHHHh
Confidence 99999999999999876 999999999999995 89999999999866 344555543
No 58
>KOG0351|consensus
Probab=100.00 E-value=4.2e-36 Score=356.41 Aligned_cols=337 Identities=19% Similarity=0.243 Sum_probs=264.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 406 NTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 406 ~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
+....+.. ||+..+++-|.++|..++.|+|++|.+|||+||++||++|++-. ++-++||.|..+|++++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHH
Confidence 34444444 99999999999999999999999999999999999999999853 44889999999999998
Q ss_pred HHHHHHHhhhcCCeEEEEeCCcchHHHH---HHHhc---CCcEEEcChHHHHHHHhcC-cccccCC---ceEEEEeCCCc
Q psy12983 485 FGVLKELMKYHHHTYGLIMGGASRQAEA---QKLAK---GINIIVATPGRLLDHLQNT-PEFLYKN---LQCLIIDEADR 554 (838)
Q Consensus 485 ~~~l~~~~~~~~~~v~~l~gg~~~~~~~---~~l~~---~~~IvV~Tp~~l~~~l~~~-~~~~~~~---l~lvViDEah~ 554 (838)
...+.. .++....+.++....++. +.+.+ .++|++.|||++...-... ....+.. +.++||||||+
T Consensus 321 v~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 877733 367777777777765333 33433 3799999999985322111 1112233 89999999999
Q ss_pred ccccC--cHHHHHHHHHHC--CccceEEEEeeecccchHHHHHHHccC-CCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 555 ILDIG--FEEDMKQIVNLL--PKRRQTMLFSATTTAKTETLTKLALKK-EPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 555 l~~~g--f~~~~~~il~~l--~~~~qil~lSAT~~~~~~~l~~~~l~~-~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
+++|| |++.++++.... .+.+.++++|||.+.++..-....++. ++..+. .. ....++...+..-...+.
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s----fnR~NL~yeV~~k~~~~~ 471 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK-SS----FNRPNLKYEVSPKTDKDA 471 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec-cc----CCCCCceEEEEeccCccc
Confidence 99998 999998864432 234789999999998887655444432 222221 11 222333333322221222
Q ss_pred HHHHHH-HHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCC
Q psy12983 630 FLLLFT-FLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDI 708 (838)
Q Consensus 630 ~~~l~~-~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDi 708 (838)
...+.. .........+||||.++++|+.++..|+..++....||++|+..+|..+.+.|..++++|+|||-++++|||.
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 223333 3334578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcC
Q psy12983 709 PAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAK 762 (838)
Q Consensus 709 p~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~ 762 (838)
|+|+.||||.+|++.+.|+|.+||||| +|....|++|+...|...++.+...+
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGR-DG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGR-DGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCc-CCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999999999 59999999999999999999998876
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.6e-35 Score=314.25 Aligned_cols=327 Identities=20% Similarity=0.228 Sum_probs=240.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.-+++.||.......+.+ |++++.|||-|||+++++.+...+.. .++ ++|+++||+-|+.|++..+++...-.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-----~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-----FGG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-----cCC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 347899999988877765 99999999999999999998887755 344 89999999999999999999998877
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~ 575 (838)
.-.+..++|.....+......+ .+|+|+||+.+.+-+..+. ++++++.++|+||||+-.+..-...+.+......++.
T Consensus 86 ~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 86 EDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred hhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 7788888988877655444433 4999999999988888764 7789999999999999776543333333333344577
Q ss_pred eEEEEeeecccchHHHHHHH--ccCCCeEEEecCccc-cccc--------------------------------------
Q psy12983 576 QTMLFSATTTAKTETLTKLA--LKKEPVYIGVDDTKE-EATV-------------------------------------- 614 (838)
Q Consensus 576 qil~lSAT~~~~~~~l~~~~--l~~~~~~i~~~~~~~-~~~~-------------------------------------- 614 (838)
.++++||||....+.+.... +..+.+.+....... ....
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999975443322211 101111111000000 0000
Q ss_pred ----------------c--cee--------------------------------------eE--------EE--------
Q psy12983 615 ----------------A--GLE--------------------------------------QG--------YV-------- 622 (838)
Q Consensus 615 ----------------~--~l~--------------------------------------~~--------~~-------- 622 (838)
. ... ++ ..
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0 000 00 00
Q ss_pred -------------------ECCchhHHHHHHHHH----HhcCCCeEEEEecchhhHHHHHHHhhcCCCCeE-Eec-----
Q psy12983 623 -------------------VCPSEKRFLLLFTFL----KKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVM-CIH----- 673 (838)
Q Consensus 623 -------------------~~~~~~k~~~l~~~l----~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~-~lh----- 673 (838)
......|+..+..++ +.+.+.++|||++.+++++.+.+.|.+.+..+. .+-
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000011222233333 234567999999999999999999999877664 332
Q ss_pred ---CCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC
Q psy12983 674 ---GKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE 750 (838)
Q Consensus 674 ---g~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~ 750 (838)
.||++.++.+++++|++|+++|||||++.++|+|+|+++.||.|++..|.-.++||.||+|| ++.|.+++++...
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR--~r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR--KRKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc--CCCCeEEEEEecC
Confidence 48999999999999999999999999999999999999999999999999999999999999 4899999999887
Q ss_pred chH
Q psy12983 751 ELG 753 (838)
Q Consensus 751 e~~ 753 (838)
..+
T Consensus 482 trd 484 (542)
T COG1111 482 TRD 484 (542)
T ss_pred chH
Confidence 543
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.8e-36 Score=321.40 Aligned_cols=338 Identities=20% Similarity=0.260 Sum_probs=271.2
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
....+|. +++.+.+.++..|++.+.|+|.-++.. +++|.|.+|+++|+||||++..++-+..+.. .+++.+
T Consensus 194 ~~vdeLd--ipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~Kml 265 (830)
T COG1202 194 VPVDELD--IPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKML 265 (830)
T ss_pred ccccccC--CcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEE
Confidence 4455666 899999999999999999999999988 7899999999999999999999988877654 578899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH----HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ----KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~----~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
|++|..+||+|.++.|++.....+..+..-.|......... .....+||||+|.+-+..+++.. ..+.+++.||
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVV 343 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVV 343 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEE
Confidence 99999999999999999999988988877776443222111 11224799999999998887776 3468999999
Q ss_pred EeCCCcccccCcHHHHHHHHH---HCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC
Q psy12983 549 IDEADRILDIGFEEDMKQIVN---LLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP 625 (838)
Q Consensus 549 iDEah~l~~~gf~~~~~~il~---~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 625 (838)
|||+|.+.+...+..+.-++. .+-+..|++.+|||..+..+....++.+ .+. .+ ..+..++++.+.+.
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~--lV~--y~-----~RPVplErHlvf~~ 414 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK--LVL--YD-----ERPVPLERHLVFAR 414 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe--eEe--ec-----CCCCChhHeeeeec
Confidence 999999988665555555443 4456899999999998765554444432 222 21 22344566777777
Q ss_pred -chhHHHHHHHHHHhc--------CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEE
Q psy12983 626 -SEKRFLLLFTFLKKN--------RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGIL 696 (838)
Q Consensus 626 -~~~k~~~l~~~l~~~--------~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VL 696 (838)
..+|...+..+.+.. -.+++|||+++++.|..++..|...|+++..||++|+..+|+.+...|.++++.++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 456666666666532 35799999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCccEEEE---eCCC-CCHHHHHHHhcccCcCC-CCccEEEEEeccC
Q psy12983 697 LCTDVAARGLDIPAVDWIVQ---YDPP-DDPKEYIHRVGRTARGE-GSSGHALLILRPE 750 (838)
Q Consensus 697 VaT~~~~~GiDip~v~~VI~---~d~p-~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~ 750 (838)
|+|.+++.|+|+|.-.+|+. ++.. -++..|.||.|||||-+ ...|.+|+++.+.
T Consensus 495 VTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 495 VTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred eehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999998766542 3333 38999999999999942 5789999998763
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1e-34 Score=338.73 Aligned_cols=313 Identities=18% Similarity=0.209 Sum_probs=229.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhh---------hHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLA---------FLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~---------~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
..+|+++++.++++++++++|+||||||.+ |+.|.+..+.... ....+.++++++||++||.|+...+.+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 467999999999999999999999999987 3344444432211 112456899999999999999999887
Q ss_pred Hhhh---cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHH
Q psy12983 491 LMKY---HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQI 567 (838)
Q Consensus 491 ~~~~---~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~i 567 (838)
..+. .+..+...+|+.... ......++.+|+++|++.. ...++++++|||||||.+...+ +.+..+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHH
Confidence 6554 256677888887732 2222233679999996521 1236789999999999987765 444445
Q ss_pred HHHC-CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC----------chhHHHHHHHH
Q psy12983 568 VNLL-PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP----------SEKRFLLLFTF 636 (838)
Q Consensus 568 l~~l-~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~----------~~~k~~~l~~~ 636 (838)
++.. +..+|+++||||++.....+. .++. ++..+.+... ....+++.|.... ...+.. +...
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l~-~~~~-~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~ 386 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRIK-EFFP-NPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTA 386 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHHH-HHhc-CCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHH-HHHH
Confidence 5443 334599999999988777764 4453 5666665421 1233444444322 111222 2233
Q ss_pred HHh---cCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHH-hcCCceEEEEccCCccCCCCCC
Q psy12983 637 LKK---NRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQF-CNAETGILLCTDVAARGLDIPA 710 (838)
Q Consensus 637 l~~---~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F-~~g~~~VLVaT~~~~~GiDip~ 710 (838)
+.. ..++++|||++++.+++.+++.|++. ++.+..+||+|++. ++.+++| ++|+.+|||||+++++|||+|+
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~ 464 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRN 464 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccC
Confidence 322 24568999999999999999999877 68999999999974 5677777 6899999999999999999999
Q ss_pred ccEEEEeC---CCC---------CHHHHHHHhcccCcCCCCccEEEEEeccCchHHH
Q psy12983 711 VDWIVQYD---PPD---------DPKEYIHRVGRTARGEGSSGHALLILRPEELGFL 755 (838)
Q Consensus 711 v~~VI~~d---~p~---------s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~ 755 (838)
+++||+++ .|. |.++|.||+|||||. ..|.|+.|+++++...+
T Consensus 465 V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~--~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 465 ATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV--SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred eeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--CCCeEEEEECHHHhHHH
Confidence 99999998 554 888999999999996 68999999998765433
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-34 Score=363.93 Aligned_cols=331 Identities=20% Similarity=0.252 Sum_probs=255.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 406 NTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 406 ~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
++.+.+++ +|| .|+++|+++++.+++|+|++++||||+|||++++++++... ..+.+++||+||++|+.|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-------hcCCeEEEEECHHHHHHHH
Confidence 44556666 899 79999999999999999999999999999997776665442 2467899999999999999
Q ss_pred HHHHHHHhhhcC--CeEEEEeCCcchHHHH---HHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-
Q psy12983 485 FGVLKELMKYHH--HTYGLIMGGASRQAEA---QKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD- 557 (838)
Q Consensus 485 ~~~l~~~~~~~~--~~v~~l~gg~~~~~~~---~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~- 557 (838)
++.++.+....+ +.+..++|+.+..++. ..+.+ .++|+|+||+++.+++... . ..+++++||||||++++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceecccc
Confidence 999999887653 5566777887766543 33444 4899999999998766542 1 26799999999999987
Q ss_pred ----------cCcHHHHHH----HHH----------------------HCCccce-EEEEeeecccchHHHHHHHccCCC
Q psy12983 558 ----------IGFEEDMKQ----IVN----------------------LLPKRRQ-TMLFSATTTAKTETLTKLALKKEP 600 (838)
Q Consensus 558 ----------~gf~~~~~~----il~----------------------~l~~~~q-il~lSAT~~~~~~~l~~~~l~~~~ 600 (838)
.||.+++.. +++ .+++..| ++++|||.+++.... . .++ ++
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~-~-l~~-~~ 292 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV-K-LYR-EL 292 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH-H-Hhh-cC
Confidence 478877764 322 2344455 677999998753222 2 222 44
Q ss_pred eEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhh---HHHHHHHhhcCCCCeEEecCCCC
Q psy12983 601 VYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMS---VKFHHELLNYIDLPVMCIHGKQK 677 (838)
Q Consensus 601 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~---~~~l~~~L~~~~~~v~~lhg~m~ 677 (838)
..+.+.. ......++.+.|+......+ ..+..+++.. +.++||||++++. ++.+++.|++.|+++..+||+
T Consensus 293 l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 293 LGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred eEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 4444433 23455667777776655544 4677777765 4689999999886 489999999999999999995
Q ss_pred hhHHHHHHHHHhcCCceEEEEc----cCCccCCCCCC-ccEEEEeCCCC---CHHHHHHHh-------------cccCcC
Q psy12983 678 QMKRTTTFFQFCNAETGILLCT----DVAARGLDIPA-VDWIVQYDPPD---DPKEYIHRV-------------GRTARG 736 (838)
Q Consensus 678 ~~~R~~i~~~F~~g~~~VLVaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~y~Qr~-------------GRagR~ 736 (838)
|...+++|++|+.+||||| ++++||||+|+ +++|||||+|. +++.|.|.. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 48999999999 99999999999 888777766 999995
Q ss_pred CCCccEEEEEeccCchHHHHHHHH
Q psy12983 737 EGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 737 ~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|..+.++..+...+...++.+..
T Consensus 444 -g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 444 -GIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred -CCcchhHHHhHHHHHHHHHHHhc
Confidence 77877776666677666665543
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.9e-34 Score=331.60 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=220.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
...|+++|.++++.++++++.++++|||+|||+++...+...+ . ....++|||+||++|+.|+.+.++++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-E-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-h-----cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 3489999999999999999999999999999997654332222 2 223489999999999999999999876544
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~ 575 (838)
...+..+.+|.... .+.+|+|+||+++.+... ..++++++||+||||++... .+..++..+++..
T Consensus 186 ~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 186 REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 44454555554332 346999999999876432 23578999999999998764 4456666676678
Q ss_pred eEEEEeeecccchHHHH-HHHccCCCeEEEecCcc--ccccccceee------------------EE-----EECCchhH
Q psy12983 576 QTMLFSATTTAKTETLT-KLALKKEPVYIGVDDTK--EEATVAGLEQ------------------GY-----VVCPSEKR 629 (838)
Q Consensus 576 qil~lSAT~~~~~~~l~-~~~l~~~~~~i~~~~~~--~~~~~~~l~~------------------~~-----~~~~~~~k 629 (838)
++++||||+.+...... ..++. .+....+.... .......... .+ .......+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~f-G~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLF-GDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhh-CCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 89999999975332111 11111 11111110000 0000000000 00 01112223
Q ss_pred HHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEc-cCCccCC
Q psy12983 630 FLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT-DVAARGL 706 (838)
Q Consensus 630 ~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT-~~~~~Gi 706 (838)
...+...... ..+.+++|||+++++++.+++.|++.+.++..+||+|+.++|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 3333333322 245689999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEE
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLI 746 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l 746 (838)
|+|++++||+++++.+...|+||+||++|.++.+..+.++
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999999964444445544
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=341.42 Aligned_cols=339 Identities=20% Similarity=0.240 Sum_probs=257.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+.+.+.+.++..|+.++.+-|+.++.... +++|++|++|||||||+++++.+++.+.+ .+.+++||||+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~------~~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE------GGGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh------cCCcEEEEeChHHHH
Confidence 66777888888899899999999887754 46999999999999999999999999865 367899999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcH
Q psy12983 482 MQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFE 561 (838)
Q Consensus 482 ~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~ 561 (838)
.|.++.|+ ....+++++...+|+.....+. ..+++|+|+|||++...+++... ....+++|||||+|.+.+...+
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 99999999 5677899999999988755422 35689999999999998888765 4589999999999999988777
Q ss_pred HHHHHHHHHCCc---cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh------HHHH
Q psy12983 562 EDMKQIVNLLPK---RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK------RFLL 632 (838)
Q Consensus 562 ~~~~~il~~l~~---~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~------k~~~ 632 (838)
..+..++...+. ..|++++|||+++..+-..|..-. +......+.. ........+.+....... ....
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~--~~~~~~rp~~-l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAK--LVESDWRPVP-LRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCc--ccccCCCCcc-cccCCccceEEEEecCccccccccchHH
Confidence 777777666543 379999999999866655555432 2111111110 011111122222222111 1222
Q ss_pred HHHHH-Hh-cCCCeEEEEecchhhHHHHHHHhhcC-------------------------------------CCCeEEec
Q psy12983 633 LFTFL-KK-NRKKKVMVFFSSCMSVKFHHELLNYI-------------------------------------DLPVMCIH 673 (838)
Q Consensus 633 l~~~l-~~-~~~~kvIIF~~t~~~~~~l~~~L~~~-------------------------------------~~~v~~lh 673 (838)
.+..+ .. ..+++++|||++++.+...++.++.. ..+++++|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 22222 22 36779999999999999999988830 12578999
Q ss_pred CCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE----EeC-----CCCCHHHHHHHhcccCcCC-CCccEE
Q psy12983 674 GKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV----QYD-----PPDDPKEYIHRVGRTARGE-GSSGHA 743 (838)
Q Consensus 674 g~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI----~~d-----~p~s~~~y~Qr~GRagR~~-g~~g~~ 743 (838)
++|+.++|..+.+.|++|+++|||||+++++|+|+|.-.+|| .|+ .+.+..++.||.|||||-+ ...|.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999988888 466 4557899999999999942 566788
Q ss_pred EEEec-cCchHHH
Q psy12983 744 LLILR-PEELGFL 755 (838)
Q Consensus 744 i~l~~-~~e~~~~ 755 (838)
+++.. .++..++
T Consensus 402 ~i~~~~~~~~~~~ 414 (766)
T COG1204 402 IILATSHDELEYL 414 (766)
T ss_pred EEEecCccchhHH
Confidence 88873 3443333
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.2e-34 Score=319.72 Aligned_cols=301 Identities=20% Similarity=0.164 Sum_probs=207.6
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchH-----
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQ----- 509 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~----- 509 (838)
++++.+|||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.++.++.. .++.++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-----~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-----QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-----CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhcc
Confidence 58999999999999999999987644 45678999999999999999999997542 334444432210
Q ss_pred -------HHHHHHh------cCCcEEEcChHHHHHHHhcC-cc--cccC--CceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 510 -------AEAQKLA------KGINIIVATPGRLLDHLQNT-PE--FLYK--NLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 510 -------~~~~~l~------~~~~IvV~Tp~~l~~~l~~~-~~--~~~~--~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
....... ...+|+++||++++..+... .. ..+. ..++|||||+|++.++++.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 1111111 13689999999998877652 11 1111 23789999999998875443 55555544
Q ss_pred C-ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEEC--CchhHHHHHHHHHHh-cCCCeEEE
Q psy12983 572 P-KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC--PSEKRFLLLFTFLKK-NRKKKVMV 647 (838)
Q Consensus 572 ~-~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~--~~~~k~~~l~~~l~~-~~~~kvII 647 (838)
+ .+.|+++||||++.....+...... .......+.. .......+.+..+ ....+...+..+++. ..++++||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lV 227 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGY-VEFNEPLDLK---EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAI 227 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCC-cccccCCCCc---cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEE
Confidence 3 4689999999998655544433221 1100000100 0000011112111 122344445555543 35679999
Q ss_pred EecchhhHHHHHHHhhcCCC--CeEEecCCCChhHHHH----HHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC
Q psy12983 648 FFSSCMSVKFHHELLNYIDL--PVMCIHGKQKQMKRTT----TFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD 721 (838)
Q Consensus 648 F~~t~~~~~~l~~~L~~~~~--~v~~lhg~m~~~~R~~----i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~ 721 (838)
||+++++++.+++.|++.+. .+..+||+|++.+|.+ +++.|++|+..|||||+++++|+|++ +++||++..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 99999999999999988765 5999999999999976 48899999999999999999999995 7899988776
Q ss_pred CHHHHHHHhcccCcCCCCc---cEEEEEeccCc
Q psy12983 722 DPKEYIHRVGRTARGEGSS---GHALLILRPEE 751 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~g~~---g~~i~l~~~~e 751 (838)
.++|+||+||+||.|.+. |..+++....+
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 789999999999974333 36777765443
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.2e-34 Score=339.74 Aligned_cols=305 Identities=18% Similarity=0.223 Sum_probs=233.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh-hhcCCeEE
Q psy12983 422 IQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM-KYHHHTYG 500 (838)
Q Consensus 422 ~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~-~~~~~~v~ 500 (838)
+-.+.+..+..+++++++|+||||||.++.+++++.. ..+.+++|+.|+|++|.|+++.+.+.+ ...+..++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~-------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP-------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh-------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3345666777889999999999999999999998764 134689999999999999999886544 33456666
Q ss_pred EEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC-cccccCcHHH-HHHHHHHCCccceEE
Q psy12983 501 LIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD-RILDIGFEED-MKQIVNLLPKRRQTM 578 (838)
Q Consensus 501 ~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah-~l~~~gf~~~-~~~il~~l~~~~qil 578 (838)
..+++.+. .....+|+|+|||+|++.+... ..++++++|||||+| +..+.++.-. +..+...++++.|++
T Consensus 79 y~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGENK------VSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEccccc------cCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 66655432 2345789999999999988764 357899999999999 5666555433 345666778899999
Q ss_pred EEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHH-----HHHHHHHHhcCCCeEEEEecchh
Q psy12983 579 LFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF-----LLLFTFLKKNRKKKVMVFFSSCM 653 (838)
Q Consensus 579 ~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~-----~~l~~~l~~~~~~kvIIF~~t~~ 653 (838)
+||||+.... + ..++. ++..+.+.... ..++.+|.......+. ..+..++.. ..+++|||++++.
T Consensus 151 lmSATl~~~~--l-~~~l~-~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ 220 (819)
T TIGR01970 151 AMSATLDGER--L-SSLLP-DAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQA 220 (819)
T ss_pred EEeCCCCHHH--H-HHHcC-CCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHH
Confidence 9999998643 3 33443 33344333211 1244555544433332 223333333 4578999999999
Q ss_pred hHHHHHHHhhc---CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC---------
Q psy12983 654 SVKFHHELLNY---IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD--------- 721 (838)
Q Consensus 654 ~~~~l~~~L~~---~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~--------- 721 (838)
+++.+++.|++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||++++||+++.+.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 99999999987 368899999999999999999999999999999999999999999999999999874
Q ss_pred ---------CHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 722 ---------DPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 722 ---------s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
|.++|.||+|||||. ..|.||.++++++..
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~--~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL--EPGVCYRLWSEEQHQ 339 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC--CCCEEEEeCCHHHHH
Confidence 345799999999996 799999999887643
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.4e-33 Score=337.64 Aligned_cols=303 Identities=18% Similarity=0.224 Sum_probs=231.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh-hhcCCeEEE
Q psy12983 423 QARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM-KYHHHTYGL 501 (838)
Q Consensus 423 Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~-~~~~~~v~~ 501 (838)
-.+.+..+.++++++++||||||||.+|.+++++.. ....+++|+.|||++|.|+++.+.+.+ ...+..++.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~-------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG-------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC-------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 345666677889999999999999999999988642 123489999999999999999986543 345677777
Q ss_pred EeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc-ccccCc-HHHHHHHHHHCCccceEEE
Q psy12983 502 IMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR-ILDIGF-EEDMKQIVNLLPKRRQTML 579 (838)
Q Consensus 502 l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~-l~~~gf-~~~~~~il~~l~~~~qil~ 579 (838)
.+++.+.. ....+|+|+|||++++++... ..++++++|||||+|. ..+.++ ...+..+++.++++.|+++
T Consensus 83 ~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESKV------GPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EecCcccc------CCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 77665432 234589999999999988764 3578999999999996 333332 2234556677788999999
Q ss_pred EeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHH-----HHHHHHHhcCCCeEEEEecchhh
Q psy12983 580 FSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL-----LLFTFLKKNRKKKVMVFFSSCMS 654 (838)
Q Consensus 580 lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~-----~l~~~l~~~~~~kvIIF~~t~~~ 654 (838)
||||++.. .+. .++. ++..+.+... ...++++|...+...+.. .+...+. ...+++|||++++.+
T Consensus 155 mSATl~~~--~l~-~~~~-~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~e 224 (812)
T PRK11664 155 MSATLDND--RLQ-QLLP-DAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGE 224 (812)
T ss_pred EecCCCHH--HHH-HhcC-CCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHH
Confidence 99999863 233 3343 3334433321 112455555554444432 2333333 346799999999999
Q ss_pred HHHHHHHhhc---CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC----------
Q psy12983 655 VKFHHELLNY---IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD---------- 721 (838)
Q Consensus 655 ~~~l~~~L~~---~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~---------- 721 (838)
++.+++.|++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||++++||+++.++
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999986 477899999999999999999999999999999999999999999999999987764
Q ss_pred --------CHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 722 --------DPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 722 --------s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
|.++|.||+|||||. ..|.||.++++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~--~~G~cyrL~t~~~~ 341 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL--EPGICLHLYSKEQA 341 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC--CCcEEEEecCHHHH
Confidence 346899999999995 69999999997764
No 68
>KOG0952|consensus
Probab=100.00 E-value=1.6e-33 Score=322.01 Aligned_cols=367 Identities=20% Similarity=0.257 Sum_probs=282.2
Q ss_pred CCCCCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhcc---CCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLK---FMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~---~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
|+|..++.+|.+++|.+.+ +.|.|||||||+|||.+|++.++..+.+.. ....++.+++||+|+++||.++++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 7889999999999999875 579999999999999999999999987521 123467899999999999999999999
Q ss_pred HHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc--ccccCCceEEEEeCCCcccccCcHHHHHHH
Q psy12983 490 ELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP--EFLYKNLQCLIIDEADRILDIGFEEDMKQI 567 (838)
Q Consensus 490 ~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~--~~~~~~l~lvViDEah~l~~~gf~~~~~~i 567 (838)
+.+...++.+..++|+....... ...++|+|+|||++.-.-+++. ...++.+++|||||+|.+-+. .++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 99999999999999988765433 2347999999999854333332 234688999999999988776 56777766
Q ss_pred HHHC-------CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch---hH--------
Q psy12983 568 VNLL-------PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE---KR-------- 629 (838)
Q Consensus 568 l~~l-------~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~k-------- 629 (838)
..+. ....+++++|||+|+-.+-..++.. + .+.++...+....+..+.+.++-.+.. ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~v--n-~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRV--N-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcC--C-CccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 5553 2457899999999986554444333 2 223333333334444555555544433 11
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC-----------------------CCCeEEecCCCChhHHHHHHH
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI-----------------------DLPVMCIHGKQKQMKRTTTFF 686 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~-----------------------~~~v~~lhg~m~~~~R~~i~~ 686 (838)
.+.+.+++ ..+.+++|||.++..+.+.|+.|.+. ..+...+|++|...+|..+.+
T Consensus 339 ~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 11122222 36789999999999999999988753 135788999999999999999
Q ss_pred HHhcCCceEEEEccCCccCCCCCCccEEE----EeCCCC------CHHHHHHHhcccCcC-CCCccEEEEEeccCchHHH
Q psy12983 687 QFCNAETGILLCTDVAARGLDIPAVDWIV----QYDPPD------DPKEYIHRVGRTARG-EGSSGHALLILRPEELGFL 755 (838)
Q Consensus 687 ~F~~g~~~VLVaT~~~~~GiDip~v~~VI----~~d~p~------s~~~y~Qr~GRagR~-~g~~g~~i~l~~~~e~~~~ 755 (838)
.|..|.++||+||..+++|+|+|+-.++| .||.-. +..+.+|..|||||- .+..|.++++.+.+....+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 99999999999999999999999977777 355443 678899999999992 2788999999999999999
Q ss_pred HHHHHcCCCCc-----------cccccchhhHHHHHHHHHHHhhc
Q psy12983 756 RYLKQAKIPLN-----------EFEFSWSKISDIQLQLEKLISKN 789 (838)
Q Consensus 756 ~~l~~~~~~~~-----------~~~~~~~~l~~~~~~l~~~~~~~ 789 (838)
..|....-+++ ..++...++.++...++|+-...
T Consensus 497 ~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTy 541 (1230)
T KOG0952|consen 497 ESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTY 541 (1230)
T ss_pred HHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhcee
Confidence 88887776765 33566778888999999886554
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-32 Score=312.49 Aligned_cols=321 Identities=21% Similarity=0.257 Sum_probs=246.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|.+|++.... .+++++|++||++||.|.++++..++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-------~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-------AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-------cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 677 89999999999999998 99999999999999999998753 378999999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc------------------------ccccCCceEEE
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP------------------------EFLYKNLQCLI 548 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~------------------------~~~~~~l~lvV 548 (838)
..++++++++|+.+.. .+....+++|+|+|...| .++|+..- ....+.+.+.|
T Consensus 170 ~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 9999999999997643 344556789999998776 34443321 11235678999
Q ss_pred EeCCCcccc---------------c--------------------CcH---------------HHHHHHH----------
Q psy12983 549 IDEADRILD---------------I--------------------GFE---------------EDMKQIV---------- 568 (838)
Q Consensus 549 iDEah~l~~---------------~--------------------gf~---------------~~~~~il---------- 568 (838)
|||+|.++= . .|. ..++.++
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 999997431 0 000 0000000
Q ss_pred --------HHC------C-------------------------------------------------------------c
Q psy12983 569 --------NLL------P-------------------------------------------------------------K 573 (838)
Q Consensus 569 --------~~l------~-------------------------------------------------------------~ 573 (838)
..+ . .
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 000 0 0
Q ss_pred cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhc--CCCeEEEEecc
Q psy12983 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN--RKKKVMVFFSS 651 (838)
Q Consensus 574 ~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~--~~~kvIIF~~t 651 (838)
..++.+||||......++...+.. ++..+.+.... .....+.++.+....|...+...+... .+.++||||+|
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l-~vv~IPt~kp~----~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGL-PVVRIPTNRPS----QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCC-CeEEeCCCCCc----cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 115689999998877777776654 44444333221 222333456677778888888888764 36789999999
Q ss_pred hhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC---Ccc-----EEEEeCCCCCH
Q psy12983 652 CMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP---AVD-----WIVQYDPPDDP 723 (838)
Q Consensus 652 ~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip---~v~-----~VI~~d~p~s~ 723 (838)
++.++.+++.|.+.|+++..+||++.+ |+..+..|..++..|+|||++++||+||+ ++. +||+++.|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999999999999999998664 55555566666667999999999999999 666 99999999999
Q ss_pred HHHHHHhcccCcCCCCccEEEEEeccCchHH
Q psy12983 724 KEYIHRVGRTARGEGSSGHALLILRPEELGF 754 (838)
Q Consensus 724 ~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~ 754 (838)
..|.||+||+||. |++|.+++|++.+|.-+
T Consensus 561 r~y~hr~GRTGRq-G~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 561 RIDRQLAGRCGRQ-GDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHhcccccCC-CCCeEEEEEechhHHHH
Confidence 9999999999997 89999999999877443
No 70
>KOG0353|consensus
Probab=100.00 E-value=5.4e-33 Score=285.48 Aligned_cols=345 Identities=16% Similarity=0.208 Sum_probs=264.1
Q ss_pred cchhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
..|..-.+||+.+..+.|++ |..+.++|.|..+|+..+.++++++..|||.||++||.+|++.. ...+|
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------dg~al 138 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------DGFAL 138 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------CCceE
Confidence 34544444589999998888 88999999999999999999999999999999999999999864 55789
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh-------cCCcEEEcChHHHHHHH---hc-Cccccc
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA-------KGINIIVATPGRLLDHL---QN-TPEFLY 541 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~-------~~~~IvV~Tp~~l~~~l---~~-~~~~~~ 541 (838)
|++|..+|+.++.-.++.++ +....+....+.++ ..+.. ....+++.||+++...- .+ .+.+..
T Consensus 139 vi~plislmedqil~lkqlg----i~as~lnansske~-~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~ 213 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQLG----IDASMLNANSSKEE-AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEA 213 (695)
T ss_pred eechhHHHHHHHHHHHHHhC----cchhhccCcccHHH-HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988888864 44334444333332 22221 23689999999874321 11 112334
Q ss_pred CCceEEEEeCCCcccccC--cHHHHHH--HHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccce
Q psy12983 542 KNLQCLIIDEADRILDIG--FEEDMKQ--IVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGL 617 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g--f~~~~~~--il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l 617 (838)
..+.+|.|||+|+.++|| |++.+.. ++++--++..+++++||.++.+.......+-.+..+.-.. .....++
T Consensus 214 ~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a----~fnr~nl 289 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA----GFNRPNL 289 (695)
T ss_pred ceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec----ccCCCCc
Confidence 678999999999999998 8888776 4666667889999999999887665554332221111111 1112333
Q ss_pred eeEEEECCc--hhHHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 618 EQGYVVCPS--EKRFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 618 ~~~~~~~~~--~~k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
...+..-+. ++-.+.+..+++.. .++..||||-+.++++.++..|+..|+....||+.|.+.+|.-+-+.|..|+++
T Consensus 290 ~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq 369 (695)
T KOG0353|consen 290 KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ 369 (695)
T ss_pred eeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE
Confidence 333333232 23344455555543 567789999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHH-------------------------------------------Hhc
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIH-------------------------------------------RVG 731 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Q-------------------------------------------r~G 731 (838)
|+|+|-++++|||.|++++|||..+|.+.+.|.| ..|
T Consensus 370 vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesg 449 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESG 449 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcc
Confidence 9999999999999999999999999999999999 789
Q ss_pred ccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 732 RTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 732 RagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
||||. +.++.|+++|.-.|.-.+..+
T Consensus 450 ragrd-~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 450 RAGRD-DMKADCILYYGFADIFKISSM 475 (695)
T ss_pred ccccC-CCcccEEEEechHHHHhHHHH
Confidence 99995 899999999988775544433
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=327.35 Aligned_cols=334 Identities=22% Similarity=0.286 Sum_probs=260.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
....+..++.+.|...++.+|.+|+..+.+|+|++|+.+||||||++|++|+++.+.. +...++|+|.||++||+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-----~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-----DPSARALLLYPTNALAN 129 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-----CcCccEEEEechhhhHh
Confidence 3455577788888889999999999999999999999999999999999999999987 44558999999999999
Q ss_pred HHHHHHHHHhhhcC--CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc---ccccCCceEEEEeCCCcccc
Q psy12983 483 QTFGVLKELMKYHH--HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP---EFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 483 Q~~~~l~~~~~~~~--~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~---~~~~~~l~lvViDEah~l~~ 557 (838)
+|.+.++++....+ +......|++...+....+.+.++|+++||+||..++.... .+.++++++||+||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998887 66666777777766667788899999999999988554432 34568899999999998765
Q ss_pred cCcHHHHHHHHHH-------CCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC-----
Q psy12983 558 IGFEEDMKQIVNL-------LPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP----- 625 (838)
Q Consensus 558 ~gf~~~~~~il~~-------l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~----- 625 (838)
. |+..+..++++ .+...|+++.|||..+..+........ ..... +.. ..........+...+
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~-~f~~~-v~~---~g~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGR-DFEVP-VDE---DGSPRGLRYFVRREPPIREL 283 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCC-cceee-ccC---CCCCCCceEEEEeCCcchhh
Confidence 4 66655554444 345789999999999776555554432 33221 221 122222333333333
Q ss_pred ----chhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHH----HHhhcCC----CCeEEecCCCChhHHHHHHHHHhcC
Q psy12983 626 ----SEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHH----ELLNYID----LPVMCIHGKQKQMKRTTTFFQFCNA 691 (838)
Q Consensus 626 ----~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~----~~L~~~~----~~v~~lhg~m~~~~R~~i~~~F~~g 691 (838)
...+...+..+... ..+-++|+|+.+++.++.++ +.+...+ ..+..++|+|...+|.++...|++|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 11233333333332 25679999999999999997 4444444 5789999999999999999999999
Q ss_pred CceEEEEccCCccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 692 ETGILLCTDVAARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 692 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
+..++++|++++-|+|+.+++.||.++.|. +..++.||.||+||. ++.+..++++.
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~-~~~~l~~~v~~ 420 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRR-GQESLVLVVLR 420 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCC-CCCceEEEEeC
Confidence 999999999999999999999999999999 999999999999997 55666666555
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.4e-32 Score=335.85 Aligned_cols=288 Identities=20% Similarity=0.278 Sum_probs=215.9
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHH
Q psy12983 408 LKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFG 486 (838)
Q Consensus 408 ~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~ 486 (838)
.+.+.+ .|+ .|+++|+.+++.++.|+|++++||||+|||. |.+|+...+.. .+.+++||+||++||.|+++
T Consensus 68 ~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHH
Confidence 344444 555 8999999999999999999999999999997 66666655433 36789999999999999999
Q ss_pred HHHHHhhhcCCeE---EEEeCCcchHHH---HHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc--
Q psy12983 487 VLKELMKYHHHTY---GLIMGGASRQAE---AQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-- 557 (838)
Q Consensus 487 ~l~~~~~~~~~~v---~~l~gg~~~~~~---~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~-- 557 (838)
.++.+....++.. ..++|+.+..++ ...+.+ +++|+|+||+++.+++.... .+++++|+||||++++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~----~~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG----PKFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc----CCCCEEEEeChHhhhhcc
Confidence 9999988766543 346677765543 233444 59999999999988776421 2799999999999998
Q ss_pred ---------cCcHHH-HHHHH----------------------HHCCccce--EEEEeeec-ccchHHHHHHHccCCCeE
Q psy12983 558 ---------IGFEED-MKQIV----------------------NLLPKRRQ--TMLFSATT-TAKTETLTKLALKKEPVY 602 (838)
Q Consensus 558 ---------~gf~~~-~~~il----------------------~~l~~~~q--il~lSAT~-~~~~~~l~~~~l~~~~~~ 602 (838)
.||.++ +..++ +.++++.| ++++|||. +..... ..++ +...
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r-~ll~ 291 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR-ELLG 291 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc-cccc
Confidence 567653 44432 23444545 56789995 433221 1222 3333
Q ss_pred EEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecch---hhHHHHHHHhhcCCCCeEEecCCCChh
Q psy12983 603 IGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSC---MSVKFHHELLNYIDLPVMCIHGKQKQM 679 (838)
Q Consensus 603 i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~---~~~~~l~~~L~~~~~~v~~lhg~m~~~ 679 (838)
+.+.. ......++.+.+..... +...+..+++.. +.++||||+++ +.++.+++.|++.|+++..+||+|++
T Consensus 292 ~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 292 FEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred eEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 33332 23345667777665543 234566666654 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCceEEEE----ccCCccCCCCCC-ccEEEEeCCC
Q psy12983 680 KRTTTFFQFCNAETGILLC----TDVAARGLDIPA-VDWIVQYDPP 720 (838)
Q Consensus 680 ~R~~i~~~F~~g~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p 720 (838)
.++++|++|+++|||| |++++||||+|+ +++||+||+|
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 7899999999999999 589999999999 8999999887
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.2e-31 Score=309.70 Aligned_cols=320 Identities=18% Similarity=0.237 Sum_probs=239.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|. .|+++|..++..+.+|+ ++.+.||+|||++|.+|++.... .|.+++|++||+.||.|.++++..++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 687 99999999999888776 99999999999999999985543 378899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
..+++++++.|+.+...+.+ ...+++|++|||+++ .+++...- ....+.+.++||||+|+++=..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999888333333 335689999999998 44444321 2345789999999999854100
Q ss_pred --------cHHHHHHHHHHCCc----------------------------------------------------------
Q psy12983 560 --------FEEDMKQIVNLLPK---------------------------------------------------------- 573 (838)
Q Consensus 560 --------f~~~~~~il~~l~~---------------------------------------------------------- 573 (838)
+......+...+..
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 11111111111110
Q ss_pred -----------------------------------------------------------cceEEEEeeecccchHHHHHH
Q psy12983 574 -----------------------------------------------------------RRQTMLFSATTTAKTETLTKL 594 (838)
Q Consensus 574 -----------------------------------------------------------~~qil~lSAT~~~~~~~l~~~ 594 (838)
..++.+||.|......++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 013455666654433444333
Q ss_pred HccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 595 ALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 595 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
+. ...+.++... ....... ...+......|...+...+.. ..+.++||||+|++.++.+++.|.+.++++..+
T Consensus 384 Y~---l~v~~IPt~k-p~~r~d~-~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 384 YN---MEVVQIPTNR-PIIRIDY-PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred hC---CcEEECCCCC-CcccccC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 22 1222222211 1111111 123445667788888888865 367899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCC---CCcc-----EEEEeCCCCCHHHHHHHhcccCcCCCCccEEE
Q psy12983 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDI---PAVD-----WIVQYDPPDDPKEYIHRVGRTARGEGSSGHAL 744 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i 744 (838)
||++.+.++..+...+..| .|+|||++++||+|+ |++. +||+++.|.+...|.||+||+||. |.+|.++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~-G~~G~s~ 535 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ-GDPGSSQ 535 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC-CCCeeEE
Confidence 9999998888888777766 799999999999999 6998 999999999999999999999997 8999999
Q ss_pred EEeccCch
Q psy12983 745 LILRPEEL 752 (838)
Q Consensus 745 ~l~~~~e~ 752 (838)
+|++.+|.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99998664
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.4e-31 Score=322.59 Aligned_cols=325 Identities=21% Similarity=0.280 Sum_probs=236.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
.+++++|++++..++.+ ++++++|||+|||++|++++...+. ..+.++|||+||++|+.|+.+.++++....+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH------KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 48899999999888876 9999999999999999999888763 2467899999999999999999998765444
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccce
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ 576 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q 576 (838)
..+..++|+.+... ...+..+.+|+|+||+.+...+... .+.+.++++|||||||++.+......+........+...
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 56777777766554 3344456799999999998776554 356788999999999998765433333333333334567
Q ss_pred EEEEeeecccchHHHHHHH--cc--------------------CCCeEEEecCcccc---------------------cc
Q psy12983 577 TMLFSATTTAKTETLTKLA--LK--------------------KEPVYIGVDDTKEE---------------------AT 613 (838)
Q Consensus 577 il~lSAT~~~~~~~l~~~~--l~--------------------~~~~~i~~~~~~~~---------------------~~ 613 (838)
+++|||||......+.... +. ....++.+.-.... ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999854322211110 00 00000000000000 00
Q ss_pred c----------------cceeeE---------------------------------------------------------
Q psy12983 614 V----------------AGLEQG--------------------------------------------------------- 620 (838)
Q Consensus 614 ~----------------~~l~~~--------------------------------------------------------- 620 (838)
. ..+...
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 0 000000
Q ss_pred ---------------EEECCchhHHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCC------
Q psy12983 621 ---------------YVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGK------ 675 (838)
Q Consensus 621 ---------------~~~~~~~~k~~~l~~~l~~----~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~------ 675 (838)
........|...+..++.. ..+.++||||+++++++.+++.|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 0000112244445555543 467899999999999999999999889999999886
Q ss_pred --CChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 676 --QKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 676 --m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|++...|+||+||+||. + .|.+++++..+..
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~-~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQ-E-EGRVVVLIAKGTR 481 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcC-C-CCEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999995 3 4888888876443
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-31 Score=297.05 Aligned_cols=292 Identities=18% Similarity=0.208 Sum_probs=199.7
Q ss_pred HHHHHHHHHHcCCC--EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc----
Q psy12983 422 IQARTIPPLLEGRD--LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH---- 495 (838)
Q Consensus 422 ~Q~~ai~~i~~~~d--vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~---- 495 (838)
+|.++++.+.++.+ +++++|||||||++|++|++.. +.+++|++|+++|+.|+++.++++....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 49999999998864 7899999999999999998842 3457999999999999999999987543
Q ss_pred CCeEEEEeCCcchH--HH-----------------H-HHHhcCCcEEEcChHHHHHHHhcCc---c----cccCCceEEE
Q psy12983 496 HHTYGLIMGGASRQ--AE-----------------A-QKLAKGINIIVATPGRLLDHLQNTP---E----FLYKNLQCLI 548 (838)
Q Consensus 496 ~~~v~~l~gg~~~~--~~-----------------~-~~l~~~~~IvV~Tp~~l~~~l~~~~---~----~~~~~l~lvV 548 (838)
+..+..+.|..... .. . ....+.++|+++||+.|..+++... . ..+.++++||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 34444444432111 00 0 0112357899999999976654321 1 1247899999
Q ss_pred EeCCCcccccCc-----HHHHHHHHHHCCccceEEEEeeecccchHHHHHHHc-cCCCeEEEecCc-------------c
Q psy12983 549 IDEADRILDIGF-----EEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLAL-KKEPVYIGVDDT-------------K 609 (838)
Q Consensus 549 iDEah~l~~~gf-----~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l-~~~~~~i~~~~~-------------~ 609 (838)
+||+|.+..++. .-....++.......++++||||+++.......... ...+. ..+... .
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI-APIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee-eeecCcccccCCChhhhccc
Confidence 999999886541 122333444334457999999999876555444321 11221 111111 0
Q ss_pred c----cccccceeeEEEECCchhHHHHH---HHHH----HhcCCCeEEEEecchhhHHHHHHHhhcCC--CCeEEecCCC
Q psy12983 610 E----EATVAGLEQGYVVCPSEKRFLLL---FTFL----KKNRKKKVMVFFSSCMSVKFHHELLNYID--LPVMCIHGKQ 676 (838)
Q Consensus 610 ~----~~~~~~l~~~~~~~~~~~k~~~l---~~~l----~~~~~~kvIIF~~t~~~~~~l~~~L~~~~--~~v~~lhg~m 676 (838)
. ......+...+.. ....+...+ ...+ +...++++||||+|++.++.+++.|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 0111234444443 222232222 2222 22356799999999999999999999864 5788899999
Q ss_pred ChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccC
Q psy12983 677 KQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTA 734 (838)
Q Consensus 677 ~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag 734 (838)
++.+|.++ ++.+|||||+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988755 478999999999999999986 565 45 889999999999997
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-30 Score=302.97 Aligned_cols=321 Identities=16% Similarity=0.183 Sum_probs=230.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .|+++| ++..+..++..++.++||+|||++|.+|++.... .+..++|++|+++||.|.++++..+..
T Consensus 67 lgl-rpydVQ--lig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL-------~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 67 LGM-FPYDVQ--VLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL-------TGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred cCC-CccHHH--HHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh-------cCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 455 445555 5554444455799999999999999999876543 356799999999999999999999999
Q ss_pred hcCCeEEEEeCCcc---hHHHHHHHhcCCcEEEcChHHH-HHHHhcC-----cccccCCceEEEEeCCCcccccC-----
Q psy12983 494 YHHHTYGLIMGGAS---RQAEAQKLAKGINIIVATPGRL-LDHLQNT-----PEFLYKNLQCLIIDEADRILDIG----- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~---~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-----~~~~~~~l~lvViDEah~l~~~g----- 559 (838)
.++++++..+++.. ...+......+++|++|||++| .+++... ....++.+.++|+||||+++-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999988776521 2222334446799999999999 4544321 22346789999999999864210
Q ss_pred -----------cHHHHHHHHHHCCc-------------------------------------------------------
Q psy12983 560 -----------FEEDMKQIVNLLPK------------------------------------------------------- 573 (838)
Q Consensus 560 -----------f~~~~~~il~~l~~------------------------------------------------------- 573 (838)
+......+...+.+
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 00111111111110
Q ss_pred --------------------------------------------------------------cceEEEEeeecccchHHH
Q psy12983 574 --------------------------------------------------------------RRQTMLFSATTTAKTETL 591 (838)
Q Consensus 574 --------------------------------------------------------------~~qil~lSAT~~~~~~~l 591 (838)
..++.+||.|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 114566666655444455
Q ss_pred HHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCe
Q psy12983 592 TKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPV 669 (838)
Q Consensus 592 ~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v 669 (838)
...+. ...+.++.... . ...-....+......|...+...+.. ..+.++||||++++.++.+++.|.+.|+++
T Consensus 377 ~~iY~---l~v~~IPt~kp-~-~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 377 IETYS---LSVVKIPTNKP-I-IRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHHhC---CCEEEcCCCCC-e-eeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 44332 11222222111 1 01111124455667788888887765 467899999999999999999999999999
Q ss_pred EEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC---------CccEEEEeCCCCCHHHHHHHhcccCcCCCCc
Q psy12983 670 MCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP---------AVDWIVQYDPPDDPKEYIHRVGRTARGEGSS 740 (838)
Q Consensus 670 ~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip---------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~ 740 (838)
..+||++.+.++..+...++.| .|+|||++++||+||+ ++++|++++.|..... .||+||+||. |.+
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq-G~~ 527 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ-GDP 527 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC-CCc
Confidence 9999999999888887777666 6999999999999999 9999999999988766 9999999997 999
Q ss_pred cEEEEEeccCchH
Q psy12983 741 GHALLILRPEELG 753 (838)
Q Consensus 741 g~~i~l~~~~e~~ 753 (838)
|.+++|++.+|.-
T Consensus 528 G~s~~~is~eD~l 540 (762)
T TIGR03714 528 GSSQFFVSLEDDL 540 (762)
T ss_pred eeEEEEEccchhh
Confidence 9999999987643
No 77
>KOG0354|consensus
Probab=100.00 E-value=1.8e-31 Score=303.51 Aligned_cols=324 Identities=20% Similarity=0.295 Sum_probs=229.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
-.++.||.+.+...+ |+|+||++|||+|||++|...++.++.. .++.++++++|++-|+.|+...+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-----~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-----RPKGKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-----CCcceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 379999999999988 9999999999999999999999998855 34588999999999999999777776654
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccc
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRR 575 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~ 575 (838)
..+....||.....-...+-...+|+++||+.+.+.+.+.....++++.++||||||+-.... +...+...+..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 444455555333222234445679999999999988887654447889999999999977665 5566656666555556
Q ss_pred eEEEEeeecccchHHHHHHHccC--------------------CCeEEEe------------------------------
Q psy12983 576 QTMLFSATTTAKTETLTKLALKK--------------------EPVYIGV------------------------------ 605 (838)
Q Consensus 576 qil~lSAT~~~~~~~l~~~~l~~--------------------~~~~i~~------------------------------ 605 (838)
|++++||||......+......- +...+.+
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999985433322111000 0000000
Q ss_pred --cCcc----------ccccccc---------------------eeeEEEE-----------------------------
Q psy12983 606 --DDTK----------EEATVAG---------------------LEQGYVV----------------------------- 623 (838)
Q Consensus 606 --~~~~----------~~~~~~~---------------------l~~~~~~----------------------------- 623 (838)
.+.. ......+ +..+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0000 0000000 0000000
Q ss_pred ----------------CC--chhHHHHHHHHH----HhcCCCeEEEEecchhhHHHHHHHhhcC---CCCeEEec-----
Q psy12983 624 ----------------CP--SEKRFLLLFTFL----KKNRKKKVMVFFSSCMSVKFHHELLNYI---DLPVMCIH----- 673 (838)
Q Consensus 624 ----------------~~--~~~k~~~l~~~l----~~~~~~kvIIF~~t~~~~~~l~~~L~~~---~~~v~~lh----- 673 (838)
.+ ...|...+..++ ......++|||+.++..+..+.+.|... +++...+-
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 00 011122222222 2235679999999999999999999842 33333332
Q ss_pred ---CCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC
Q psy12983 674 ---GKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE 750 (838)
Q Consensus 674 ---g~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~ 750 (838)
.+|++.+..+++++|++|+++|||||+++++|+||+.|+.||.||...++...+||+|| ||+ +.|.+++++...
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa--~ns~~vll~t~~ 529 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA--RNSKCVLLTTGS 529 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc--cCCeEEEEEcch
Confidence 48999999999999999999999999999999999999999999999999999999999 996 778888888854
Q ss_pred c
Q psy12983 751 E 751 (838)
Q Consensus 751 e 751 (838)
+
T Consensus 530 ~ 530 (746)
T KOG0354|consen 530 E 530 (746)
T ss_pred h
Confidence 4
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.2e-30 Score=295.72 Aligned_cols=320 Identities=21% Similarity=0.282 Sum_probs=243.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|. .|+++|..+...+.+|+ ++.++||+|||++|.+|++-... .+.++.|++||..||.|.++++..++.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL-------~G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL-------TGKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH-------hCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 687 89999999998887776 99999999999999999953332 256799999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
..+++++++.|+.+..+.... ..++|+||||++| .++++... ...++.+.++||||+|+++-..
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 999999999998886544333 3579999999999 88887652 2456889999999999854200
Q ss_pred -------------------------cH---------------HHHHHH------------------HHHC------C---
Q psy12983 560 -------------------------FE---------------EDMKQI------------------VNLL------P--- 572 (838)
Q Consensus 560 -------------------------f~---------------~~~~~i------------------l~~l------~--- 572 (838)
|. ..++.+ ...+ .
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 00 000000 0000 0
Q ss_pred ----------------------------------------------------------ccceEEEEeeecccchHHHHHH
Q psy12983 573 ----------------------------------------------------------KRRQTMLFSATTTAKTETLTKL 594 (838)
Q Consensus 573 ----------------------------------------------------------~~~qil~lSAT~~~~~~~l~~~ 594 (838)
...++.+||.|......++...
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 0114577777776655555555
Q ss_pred HccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 595 ALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 595 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
+.- . .+.++...... .. -....+......|...+...+.. ..+.++||||+++..++.+++.|.+.|++...+
T Consensus 361 Y~l-~--vv~IPtnkp~~-R~-d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 361 YNL-E--VVVVPTNRPVI-RK-DLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred hCC-C--EEEeCCCCCee-ee-eCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 432 2 23233221111 11 11113344455677676665532 478899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC-------ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEE
Q psy12983 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA-------VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALL 745 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~-------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~ 745 (838)
||+ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||. |.+|.+.+
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRq-G~~G~s~~ 512 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQ-GDPGSSRF 512 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCC-CCCcceEE
Confidence 998 779999999999999999999999999999998 55999999999999999999999997 89999999
Q ss_pred EeccCchH
Q psy12983 746 ILRPEELG 753 (838)
Q Consensus 746 l~~~~e~~ 753 (838)
|++.+|.-
T Consensus 513 ~ls~eD~l 520 (745)
T TIGR00963 513 FLSLEDNL 520 (745)
T ss_pred EEeccHHH
Confidence 99987743
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.6e-30 Score=302.09 Aligned_cols=323 Identities=14% Similarity=0.209 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHHc-C--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy12983 418 KMTEIQARTIPPLLE-G--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~-~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~ 494 (838)
.++|+|++++..+.. + +..++++|||+|||++++..+... +.++|||||+..|+.||.+.|.++...
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 789999999999874 3 478999999999999987655432 356999999999999999999998654
Q ss_pred cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC-------cccccCCceEEEEeCCCcccccCcHHHHHHH
Q psy12983 495 HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT-------PEFLYKNLQCLIIDEADRILDIGFEEDMKQI 567 (838)
Q Consensus 495 ~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~-------~~~~~~~l~lvViDEah~l~~~gf~~~~~~i 567 (838)
....+...+|+.... .....+|+|+|+.++.....+. ..+.-..+++||+||+|++... .+..+
T Consensus 325 ~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRV 395 (732)
T ss_pred CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHH
Confidence 445566666543221 1223689999998875432221 1122246899999999998643 34445
Q ss_pred HHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCcc--ccccccceeeEEE-----------------------
Q psy12983 568 VNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTK--EEATVAGLEQGYV----------------------- 622 (838)
Q Consensus 568 l~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~--~~~~~~~l~~~~~----------------------- 622 (838)
+..+.. ...+++||||.............-.|.....+-.+ ....+....-.-+
T Consensus 396 l~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 396 LTIVQA-HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HHhcCc-CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 555533 35799999997543222111111122221111000 0000111110001
Q ss_pred ECCchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC-CceEEEEc
Q psy12983 623 VCPSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA-ETGILLCT 699 (838)
Q Consensus 623 ~~~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~VLVaT 699 (838)
...+..|...+..+++.+ ++.++||||.++..++.+++.|. +..+||++++.+|.+++++|++| ++++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 112234555555556544 67899999999999999988873 46799999999999999999975 88999999
Q ss_pred cCCccCCCCCCccEEEEeCCC-CCHHHHHHHhcccCcCCCCccE-------EEEEeccCchH------HHHHHHHcCCCC
Q psy12983 700 DVAARGLDIPAVDWIVQYDPP-DDPKEYIHRVGRTARGEGSSGH-------ALLILRPEELG------FLRYLKQAKIPL 765 (838)
Q Consensus 700 ~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~~g~~g~-------~i~l~~~~e~~------~~~~l~~~~~~~ 765 (838)
+++.+|+|+|++++||+++.| .|..+|+||+||++|. +..|. .|.|++++..+ ..++|.+.|...
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~-~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~ 628 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRA-KKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSF 628 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccC-CCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCee
Confidence 999999999999999999988 5999999999999996 44433 37788875543 345666666554
Q ss_pred c
Q psy12983 766 N 766 (838)
Q Consensus 766 ~ 766 (838)
+
T Consensus 629 ~ 629 (732)
T TIGR00603 629 K 629 (732)
T ss_pred E
Confidence 4
No 80
>KOG0349|consensus
Probab=99.97 E-value=1e-30 Score=272.89 Aligned_cols=274 Identities=26% Similarity=0.490 Sum_probs=210.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc---CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEE
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYH---HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCL 547 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~---~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lv 547 (838)
++|+-|+++|++|..+.++++.... .++..++.||.-.+.+...+.++.+|+|+||+|+.+.+.... ..+..++++
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~-~~lt~crFl 367 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL-VTLTHCRFL 367 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc-eeeeeeEEE
Confidence 6889999999999999888775543 234446778888889999999999999999999999887764 667889999
Q ss_pred EEeCCCcccccCcHHHHHHHHHHCCc------cceEEEEeeeccc-chHHHHHHHccCCCeEEEecCccccccccceeeE
Q psy12983 548 IIDEADRILDIGFEEDMKQIVNLLPK------RRQTMLFSATTTA-KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQG 620 (838)
Q Consensus 548 ViDEah~l~~~gf~~~~~~il~~l~~------~~qil~lSAT~~~-~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~ 620 (838)
|+||++.++..++.+.+.++...+|. +.|.+.+|||+.. .+..+....+. -|..+.+..++ ..+....+.
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmh-fptwVdLkgeD--~vpetvHhv 444 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMH-FPTWVDLKGED--LVPETVHHV 444 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhcc-CceeEeccccc--ccchhhccc
Confidence 99999999999988888888777763 5789999999874 23333333332 33333332111 111111110
Q ss_pred EEE-CC-----------------------------chh---------HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHH
Q psy12983 621 YVV-CP-----------------------------SEK---------RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHEL 661 (838)
Q Consensus 621 ~~~-~~-----------------------------~~~---------k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~ 661 (838)
... ++ +.+ |-+.-...++++.-.+.||||.|+.+|+.+.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 000 00 000 111223334455567999999999999999999
Q ss_pred hhcC---CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCC
Q psy12983 662 LNYI---DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEG 738 (838)
Q Consensus 662 L~~~---~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g 738 (838)
+++. .+.+.++||+..+.+|++-++.|++++.+.||||++++||+||..+-++|+..+|.+...|+||+||+||+ .
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra-e 603 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA-E 603 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh-h
Confidence 9887 36899999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CccEEEEEecc
Q psy12983 739 SSGHALLILRP 749 (838)
Q Consensus 739 ~~g~~i~l~~~ 749 (838)
+-|.++.++..
T Consensus 604 rmglaislvat 614 (725)
T KOG0349|consen 604 RMGLAISLVAT 614 (725)
T ss_pred hcceeEEEeec
Confidence 88999988754
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.4e-28 Score=291.90 Aligned_cols=316 Identities=18% Similarity=0.236 Sum_probs=221.7
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy12983 418 KMTEIQARTIPPLLEG---RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~---~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~ 494 (838)
.+++.|+++++.+.++ +++++.|+||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-------~g~~vLvLvPt~~L~~Q~~~~l~~~f-- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-------QGKQALVLVPEIALTPQMLARFRARF-- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh--
Confidence 6999999999999874 78999999999999999988877763 36789999999999999999998754
Q ss_pred cCCeEEEEeCCcchHHHH---HHHh-cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc------HHHH
Q psy12983 495 HHHTYGLIMGGASRQAEA---QKLA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF------EEDM 564 (838)
Q Consensus 495 ~~~~v~~l~gg~~~~~~~---~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf------~~~~ 564 (838)
+..+..++++.+..+.. ..+. +.++|+|+|++.+. ..++++++|||||+|....+.. ...+
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 56788888887665433 3333 45899999987763 3367899999999998664421 1122
Q ss_pred HHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh-------HHHHHHHHH
Q psy12983 565 KQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK-------RFLLLFTFL 637 (838)
Q Consensus 565 ~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-------k~~~l~~~l 637 (838)
. +......+.+++++|||++.........+ ....+.............+ ..+...... --..+++.+
T Consensus 286 a-~~ra~~~~~~~il~SATps~~s~~~~~~g---~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 286 A-VVRAKLENIPVVLGSATPSLESLANAQQG---RYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred H-HHHhhccCCCEEEEcCCCCHHHHHHHhcc---ceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHHH
Confidence 2 22333467899999999886554443321 2222222211110101111 111111000 012334444
Q ss_pred Hh--cCCCeEEEEecch------------------------------------------------------------hhH
Q psy12983 638 KK--NRKKKVMVFFSSC------------------------------------------------------------MSV 655 (838)
Q Consensus 638 ~~--~~~~kvIIF~~t~------------------------------------------------------------~~~ 655 (838)
++ ..+.++|+|+|++ ..+
T Consensus 360 ~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~ 439 (679)
T PRK05580 360 KQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGT 439 (679)
T ss_pred HHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccH
Confidence 33 2566899998752 134
Q ss_pred HHHHHHhhcC--CCCeEEecCCCCh--hHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC----------
Q psy12983 656 KFHHELLNYI--DLPVMCIHGKQKQ--MKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD---------- 721 (838)
Q Consensus 656 ~~l~~~L~~~--~~~v~~lhg~m~~--~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~---------- 721 (838)
+.+++.|++. +.++..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|++++|+.++++.
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~ 519 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRAS 519 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchH
Confidence 5677777765 7789999999974 5789999999999999999999999999999999997666542
Q ss_pred --CHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 722 --DPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 722 --s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
....|+|++||+||+ +..|.+++.....+...++.+
T Consensus 520 Er~~~~l~q~~GRagR~-~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 520 ERTFQLLTQVAGRAGRA-EKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHHHHHHHhhccCC-CCCCEEEEEeCCCCCHHHHHH
Confidence 236799999999996 889999988766554444433
No 82
>KOG0951|consensus
Probab=99.97 E-value=3.4e-29 Score=289.37 Aligned_cols=356 Identities=21% Similarity=0.264 Sum_probs=265.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhccCC----CCCCcEEEEEcCC
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFM----PRNGTGIIIISPT 477 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~----~~~~~~vlvl~Pt 477 (838)
+++|-..+. +|..+++++|....+..+.+ .++++|||||+|||.++++-+++.+...... .....+++|++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 445544433 57788999999999998876 6899999999999999999999998764321 1234579999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccccc-CCceEEEEeCCCccc
Q psy12983 478 RELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLY-KNLQCLIIDEADRIL 556 (838)
Q Consensus 478 ~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~-~~l~lvViDEah~l~ 556 (838)
++|++.+...|.++...++++|..++|+.....+. ..+..|+|||||+..-.-++...... +-++++||||+|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999986643221 13468999999998655555433322 357899999999875
Q ss_pred ccCcHHHHHHHHHHC-------CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh-
Q psy12983 557 DIGFEEDMKQIVNLL-------PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK- 628 (838)
Q Consensus 557 ~~gf~~~~~~il~~l-------~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~- 628 (838)
+. .++.+..+..+. ....+++++|||+|+-.+- ..+++-++. .+...+....+..+.|.++-....+
T Consensus 451 Dd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV--~~Fl~v~~~--glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 451 DD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDV--ASFLRVDPE--GLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred cc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhh--HHHhccCcc--cccccCcccCcCCccceEeccccCCc
Confidence 54 556665554432 2367899999999985432 223332321 1122223344555667666554322
Q ss_pred --HHHH-----HHHHHHhcCCCeEEEEecchhhHHHHHHHhhc-------------------------------------
Q psy12983 629 --RFLL-----LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNY------------------------------------- 664 (838)
Q Consensus 629 --k~~~-----l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~------------------------------------- 664 (838)
+..+ .-.+++....+++|||+.+++++.+.|+.++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 2222 22344445678999999999999988888772
Q ss_pred CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE----EeCCC------CCHHHHHHHhcccC
Q psy12983 665 IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV----QYDPP------DDPKEYIHRVGRTA 734 (838)
Q Consensus 665 ~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI----~~d~p------~s~~~y~Qr~GRag 734 (838)
+.++++.+|+||+..+|..+.+.|++|.++|||+|..+++|+|+|+-.++| .||+- .++.+..||.||||
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 145789999999999999999999999999999999999999999988888 35543 38899999999999
Q ss_pred cCC-CCccEEEEEeccCchHHHHHHHHcCCCCccc
Q psy12983 735 RGE-GSSGHALLILRPEELGFLRYLKQAKIPLNEF 768 (838)
Q Consensus 735 R~~-g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 768 (838)
|.+ ...|..++.....+..++..+.+..+|+++-
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn~qLpiesq 720 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQ 720 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhhhcCCChHH
Confidence 942 5667788888888888888888888887643
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=4.1e-28 Score=294.63 Aligned_cols=303 Identities=20% Similarity=0.290 Sum_probs=210.4
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC----HHHHHHHHHHHHHHhhhc
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT----RELSMQTFGVLKELMKYH 495 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt----~~La~Q~~~~l~~~~~~~ 495 (838)
.....+.+..+..++.++|+|+||||||. ++|.+..-.. . .....+++.-|. ++||.++++++... .
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g--~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~---l 146 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG--R--GVKGLIGHTQPRRLAARTVANRIAEELETE---L 146 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC--C--CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---h
Confidence 34445666677777888999999999998 5785543211 1 112345555675 57777777666542 2
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC-cccccCcHHH-HHHHHHHCCc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD-RILDIGFEED-MKQIVNLLPK 573 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah-~l~~~gf~~~-~~~il~~l~~ 573 (838)
+..++.-....+ ....+.+|+|+|||+|++.+.... .++++++||||||| +..+.+|... ++.++.. ++
T Consensus 147 G~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 147 GGCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred cceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 333333222221 113467999999999999988653 37899999999999 6788777643 3334332 34
Q ss_pred cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch------hHHHHHHHHH---HhcCCCe
Q psy12983 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE------KRFLLLFTFL---KKNRKKK 644 (838)
Q Consensus 574 ~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~k~~~l~~~l---~~~~~~k 644 (838)
+.|+++||||++. ..+...+. ..+ .+.+.... ..++..|...... +....+...+ .....+.
T Consensus 218 dlKvILmSATid~--e~fs~~F~-~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFN-NAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcC-CCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 6899999999974 45555443 233 34443211 1133344433221 1222333222 2345678
Q ss_pred EEEEecchhhHHHHHHHhhcCCCC---eEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC--
Q psy12983 645 VMVFFSSCMSVKFHHELLNYIDLP---VMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP-- 719 (838)
Q Consensus 645 vIIF~~t~~~~~~l~~~L~~~~~~---v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~-- 719 (838)
+|||+++..+++.+++.|++.+++ +..+||+|++.+|..+++. .|..+|||||+++++|||+|++++||+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987654 6789999999999999886 578899999999999999999999999863
Q ss_pred -------------C---CCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 720 -------------P---DDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 720 -------------p---~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
| .|.++|.||+|||||. ..|.||.++++++..
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~--~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV--SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC--CCcEEEEeCCHHHHH
Confidence 3 3668999999999996 689999999976643
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.4e-27 Score=283.21 Aligned_cols=312 Identities=19% Similarity=0.165 Sum_probs=205.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc-
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH- 495 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~- 495 (838)
..|+|+|+.+......+..+++.+|||+|||++++.++...+.. ....+++|..||+++++|++++++++....
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-----GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 48999999886544445679999999999999998887765533 345789999999999999999998755432
Q ss_pred -CCeEEEEeCCcchHHH---------------------HHHHhc------CCcEEEcChHHHHHHHhcCcccccCCc---
Q psy12983 496 -HHTYGLIMGGASRQAE---------------------AQKLAK------GINIIVATPGRLLDHLQNTPEFLYKNL--- 544 (838)
Q Consensus 496 -~~~v~~l~gg~~~~~~---------------------~~~l~~------~~~IvV~Tp~~l~~~l~~~~~~~~~~l--- 544 (838)
...+.+.+|....... ..++.+ -.+|+|||+.+++......+...++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 3456666665432110 012221 169999999998755544332222222
Q ss_pred -eEEEEeCCCcccccCcHHHHHHHHHHC-CccceEEEEeeecccchHHH-HHHHccCC--------CeEEEecCcc-ccc
Q psy12983 545 -QCLIIDEADRILDIGFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETL-TKLALKKE--------PVYIGVDDTK-EEA 612 (838)
Q Consensus 545 -~lvViDEah~l~~~gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l-~~~~l~~~--------~~~i~~~~~~-~~~ 612 (838)
++|||||+|.+... ....+..+++.+ .....+++||||++...... ...+-... |......... ...
T Consensus 440 ~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 48999999997543 333444444443 23577999999999765442 22221100 0000000000 000
Q ss_pred ccc------ceeeEEEE--C--Cc-hhHHHHHHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcCC---CCeEEecCCCC
Q psy12983 613 TVA------GLEQGYVV--C--PS-EKRFLLLFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYID---LPVMCIHGKQK 677 (838)
Q Consensus 613 ~~~------~l~~~~~~--~--~~-~~k~~~l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~~---~~v~~lhg~m~ 677 (838)
... .....+.. . .. ......+..+++. ..+++++|||||++.++.+++.|++.+ .++..+||+++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000 00111111 1 11 1112222333332 356799999999999999999999764 57999999999
Q ss_pred hhHH----HHHHHHH-hcCC---ceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCC
Q psy12983 678 QMKR----TTTFFQF-CNAE---TGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGE 737 (838)
Q Consensus 678 ~~~R----~~i~~~F-~~g~---~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~ 737 (838)
..+| +++++.| ++|+ ..|||||+++++|+|+ +++++|...+| .+.++||+||+||.+
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 9999 4567788 5665 4799999999999999 68999998888 689999999999963
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4e-27 Score=270.13 Aligned_cols=295 Identities=18% Similarity=0.207 Sum_probs=200.2
Q ss_pred EEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH---HH
Q psy12983 437 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE---AQ 513 (838)
Q Consensus 437 lv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~---~~ 513 (838)
++.||||||||++|+..+...+. .+++++|++|+++|+.|+++.+++.+ +..+..++++.+..+. +.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 47899999999999877666652 37789999999999999999998864 4567778887665443 33
Q ss_pred HHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-----c-HHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 514 KLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-----F-EEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 514 ~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-----f-~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.+.. ..+|||||+..+. ..++++++|||||+|....++ | ...+..... ...+.+++++||||+.
T Consensus 71 ~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsl 141 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCH
Confidence 3333 4799999987652 236789999999999876543 1 112222222 2357899999999886
Q ss_pred chHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh----HHHHHHHHHHh--cCCCeEEEEecchhh------
Q psy12983 587 KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK----RFLLLFTFLKK--NRKKKVMVFFSSCMS------ 654 (838)
Q Consensus 587 ~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----k~~~l~~~l~~--~~~~kvIIF~~t~~~------ 654 (838)
+.......+ ....+.............+ .++...... --..++..++. ..++++|||+|++.-
T Consensus 142 es~~~~~~g---~~~~~~l~~r~~~~~~p~v--~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C 216 (505)
T TIGR00595 142 ESYHNAKQK---AYRLLVLTRRVSGRKPPEV--KLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLC 216 (505)
T ss_pred HHHHHHhcC---CeEEeechhhhcCCCCCeE--EEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEh
Confidence 544333221 2222222111100111111 111111111 11234444433 256789999776532
Q ss_pred ------------------------------------------------------HHHHHHHhhcC--CCCeEEecCCCCh
Q psy12983 655 ------------------------------------------------------VKFHHELLNYI--DLPVMCIHGKQKQ 678 (838)
Q Consensus 655 ------------------------------------------------------~~~l~~~L~~~--~~~v~~lhg~m~~ 678 (838)
++++++.|++. +.++..+|++++.
T Consensus 217 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~ 296 (505)
T TIGR00595 217 RSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296 (505)
T ss_pred hhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccccc
Confidence 47778888776 7789999999987
Q ss_pred hHH--HHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC------------CHHHHHHHhcccCcCCCCccEEE
Q psy12983 679 MKR--TTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD------------DPKEYIHRVGRTARGEGSSGHAL 744 (838)
Q Consensus 679 ~~R--~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~------------s~~~y~Qr~GRagR~~g~~g~~i 744 (838)
..+ +.+++.|++|+.+|||+|+++++|+|+|++++|+..+... ....|+|++||+||+ +..|.++
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~-~~~g~vi 375 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA-EDPGQVI 375 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC-CCCCEEE
Confidence 766 8999999999999999999999999999999987555432 357899999999996 7889998
Q ss_pred EEeccCchHHHH
Q psy12983 745 LILRPEELGFLR 756 (838)
Q Consensus 745 ~l~~~~e~~~~~ 756 (838)
+.....+...++
T Consensus 376 iqt~~p~~~~~~ 387 (505)
T TIGR00595 376 IQTYNPNHPAIQ 387 (505)
T ss_pred EEeCCCCCHHHH
Confidence 766554443333
No 86
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=9.9e-27 Score=279.46 Aligned_cols=337 Identities=16% Similarity=0.179 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.|.|+|.++...+... ..+++...+|.|||..+.+.+-..+.. ....++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF--- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF--- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh---
Confidence 6999999998887654 479999999999999887766655543 345689999997 89999988887654
Q ss_pred CCeEEEEeCCcchHHHHH---HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--cHHHHHHHHHH
Q psy12983 496 HHTYGLIMGGASRQAEAQ---KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG--FEEDMKQIVNL 570 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~---~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g--f~~~~~~il~~ 570 (838)
+.....+.++. ...... ..-...+++|+|.+.+...-.....+.-..+++||+||||++.... -...++.+...
T Consensus 223 ~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 33333333221 111000 0011358999998877542111111223568999999999986321 11223333332
Q ss_pred CCccceEEEEeeecccc-hH------------------HHHH-------------HHccCCC---------------e--
Q psy12983 571 LPKRRQTMLFSATTTAK-TE------------------TLTK-------------LALKKEP---------------V-- 601 (838)
Q Consensus 571 l~~~~qil~lSAT~~~~-~~------------------~l~~-------------~~l~~~~---------------~-- 601 (838)
......++++||||... .. .+.. ..+...+ .
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 22345689999998731 10 0100 0000000 0
Q ss_pred --------------------------------EEEecCccc--cccccceeeEE-E------------------------
Q psy12983 602 --------------------------------YIGVDDTKE--EATVAGLEQGY-V------------------------ 622 (838)
Q Consensus 602 --------------------------------~i~~~~~~~--~~~~~~l~~~~-~------------------------ 622 (838)
.+....... ...+....+.+ +
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 000000000 00000000000 0
Q ss_pred ------------ECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhh-cCCCCeEEecCCCChhHHHHHHHHHh
Q psy12983 623 ------------VCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLN-YIDLPVMCIHGKQKQMKRTTTFFQFC 689 (838)
Q Consensus 623 ------------~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~-~~~~~v~~lhg~m~~~~R~~i~~~F~ 689 (838)
....+.|...+..+++.....++||||+++.++..+++.|+ ..|+++..+||+|++.+|.++++.|+
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 11123456677888887778899999999999999999994 56999999999999999999999999
Q ss_pred cC--CceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc---hHHHHHHHHcCCC
Q psy12983 690 NA--ETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE---LGFLRYLKQAKIP 764 (838)
Q Consensus 690 ~g--~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e---~~~~~~l~~~~~~ 764 (838)
++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|. |+++.+.+++...+ ...+..+.+.++.
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~Ri-GQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRI-GQKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccC-CCCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 85 589999999999999999999999999999999999999999997 78887766665533 2333444444444
Q ss_pred C
Q psy12983 765 L 765 (838)
Q Consensus 765 ~ 765 (838)
+
T Consensus 621 i 621 (956)
T PRK04914 621 A 621 (956)
T ss_pred c
Confidence 3
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-27 Score=270.32 Aligned_cols=294 Identities=23% Similarity=0.305 Sum_probs=205.5
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLE----GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.++++|++++..+.+ ++..++++|||+|||.+++..+-.. +..+|||||+++|+.|+.+.+.....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----------KRSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----------cCCEEEEECcHHHHHHHHHHHHHhcC
Confidence 799999999999988 8999999999999999887766543 23399999999999999877777544
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
.. ..++...++..... . ..|+|+|...+..... ...+..+.+++||+||||++....+..... .+..
T Consensus 106 ~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~----~~~~ 172 (442)
T COG1061 106 LN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILE----LLSA 172 (442)
T ss_pred Cc-cccceecCceeccC------C-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHH----hhhc
Confidence 22 12333333332211 1 3699999998866421 112333578999999999987765443333 3322
Q ss_pred cceEEEEeeecccch-HHHHHHHccCCCeEEEecCcc--ccccccceeeEEEE---------------------------
Q psy12983 574 RRQTMLFSATTTAKT-ETLTKLALKKEPVYIGVDDTK--EEATVAGLEQGYVV--------------------------- 623 (838)
Q Consensus 574 ~~qil~lSAT~~~~~-~~l~~~~l~~~~~~i~~~~~~--~~~~~~~l~~~~~~--------------------------- 623 (838)
...++++||||.... ...........+......... ............+.
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 222899999988533 121111111111221111000 00000000000000
Q ss_pred -----------CCchhHHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC
Q psy12983 624 -----------CPSEKRFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA 691 (838)
Q Consensus 624 -----------~~~~~k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g 691 (838)
.....+...+...+..+ ++.+++||+.++.+++.++..+...++ +..+.|..+..+|..+++.|+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC
Confidence 11122333344444444 577999999999999999999998877 88999999999999999999999
Q ss_pred CceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCc
Q psy12983 692 ETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 735 (838)
Q Consensus 692 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 735 (838)
++++||++.++.+|+|+|+++++|..+...|...|.||+||.-|
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999
No 88
>KOG0947|consensus
Probab=99.95 E-value=1.5e-26 Score=262.18 Aligned_cols=325 Identities=21% Similarity=0.251 Sum_probs=246.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.++| .+-.+|++||-++.+|.+++|.|+|.+|||++|..++.-.- .++.+++|.+|-++|-+|.++.|++-+
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-------hhccceEecchhhhhccchHHHHHHhc
Confidence 4788 89999999999999999999999999999999877765442 468899999999999999999999876
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~ 572 (838)
...+ +++|+... ...+.++|+|.+.|.+++.++..+ .+++.+||+||+|.+.+...+...++++-.+|
T Consensus 365 ~Dvg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 365 GDVG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cccc----eeecceee-------CCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeecc
Confidence 5433 67776543 344689999999999999888644 58899999999999999988888999999999
Q ss_pred ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEE------------------------------
Q psy12983 573 KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYV------------------------------ 622 (838)
Q Consensus 573 ~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~------------------------------ 622 (838)
+.+++|++|||.++..+-..|.+-.+......+....+... ++++..
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVP---LEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVP---LEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccc---eEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 99999999999998877666665432221111111010000 000000
Q ss_pred ---------------------------EC------Cc--hh---HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhc
Q psy12983 623 ---------------------------VC------PS--EK---RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNY 664 (838)
Q Consensus 623 ---------------------------~~------~~--~~---k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~ 664 (838)
.. .. .. ....++..+....--+++|||-+++.|+..++.|..
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 00 00 01 123445555555666899999999999999999875
Q ss_pred C---------------------------------------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 665 I---------------------------------------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 665 ~---------------------------------------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
. .-+++++||++-+--++-+...|..|-++||+||.++++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 2 1258899999999999999999999999999999999999
Q ss_pred CCCCCccEEEE----eCC----CCCHHHHHHHhcccCcCC-CCccEEEEEeccC--chHHHHHHHH
Q psy12983 706 LDIPAVDWIVQ----YDP----PDDPKEYIHRVGRTARGE-GSSGHALLILRPE--ELGFLRYLKQ 760 (838)
Q Consensus 706 iDip~v~~VI~----~d~----p~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~--e~~~~~~l~~ 760 (838)
+|.|.-.+|+. .|- --.+-.|.||+|||||.| ...|.++++.... +...++.+.-
T Consensus 670 VNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 670 VNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred cCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 99999777663 111 126789999999999974 5678888776653 4445555543
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=2.6e-26 Score=280.16 Aligned_cols=302 Identities=19% Similarity=0.246 Sum_probs=212.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh-hcCCeEEEE
Q psy12983 424 ARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK-YHHHTYGLI 502 (838)
Q Consensus 424 ~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~-~~~~~v~~l 502 (838)
.+.+..+..++.++|+|+||||||. ++|.+..-.. . .....+++.-|.|.-|..++..+.+.+. ..+..++..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~--~--~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG--R--GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC--C--CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 4566666677889999999999998 4675543211 1 1234677788999888888877666443 223344433
Q ss_pred eCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC-cccccCcHHH-HHHHHHHCCccceEEEE
Q psy12983 503 MGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD-RILDIGFEED-MKQIVNLLPKRRQTMLF 580 (838)
Q Consensus 503 ~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah-~l~~~gf~~~-~~~il~~l~~~~qil~l 580 (838)
....+. ......|.++|+|+|++.+.... .++++++|||||+| +..+.+|.-. ++.++.. +++.++++|
T Consensus 147 vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlm 217 (1283)
T TIGR01967 147 VRFHDQ------VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIIT 217 (1283)
T ss_pred EcCCcc------cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEE
Confidence 332222 13456899999999999887654 36899999999999 5778776654 5555443 457899999
Q ss_pred eeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc------hhHHHHHHHHHH---hcCCCeEEEEecc
Q psy12983 581 SATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS------EKRFLLLFTFLK---KNRKKKVMVFFSS 651 (838)
Q Consensus 581 SAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------~~k~~~l~~~l~---~~~~~kvIIF~~t 651 (838)
|||+.. ..+...+. ..+ .+.+.... . .+...|..... ..+...+...+. ....+.+|||+++
T Consensus 218 SATld~--~~fa~~F~-~ap-vI~V~Gr~-~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 218 SATIDP--ERFSRHFN-NAP-IIEVSGRT-Y----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred eCCcCH--HHHHHHhc-CCC-EEEECCCc-c----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 999974 45555543 233 34333211 1 12223332211 122333333332 2356799999999
Q ss_pred hhhHHHHHHHhhcCC---CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCC--------
Q psy12983 652 CMSVKFHHELLNYID---LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP-------- 720 (838)
Q Consensus 652 ~~~~~~l~~~L~~~~---~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p-------- 720 (838)
..+++.+++.|++.+ ..+..+||+|++++|.++++.+ +..+|+|||+++++|||||++++||+++.+
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 999999999998764 4588899999999999997654 346899999999999999999999998854
Q ss_pred ----------CCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 721 ----------DDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 721 ----------~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
.|.++|.||+|||||. + .|.||.++++++..
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~-~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRV-A-PGICIRLYSEEDFN 407 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCC-C-CceEEEecCHHHHH
Confidence 3678999999999997 4 99999999876643
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-24 Score=254.85 Aligned_cols=319 Identities=20% Similarity=0.252 Sum_probs=227.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-.--.+.+| -|+.++||+|||++|.+|++..... +..++|++||++||.|.++++..++.
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-------G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-------GRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 566 7888887766555554 4899999999999999999976543 56799999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCccccc-----CCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTPEFLY-----KNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~~~~~-----~~l~lvViDEah~l~~~g-------- 559 (838)
..++++++++|+.+........ .+||+||||++| .++++....+.+ +.+.++||||+|+++=..
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 9999999999998776654433 589999999999 888887643333 589999999999854210
Q ss_pred --------cHHHHHHHHHHCCc--------------cceEE---------------------------------------
Q psy12983 560 --------FEEDMKQIVNLLPK--------------RRQTM--------------------------------------- 578 (838)
Q Consensus 560 --------f~~~~~~il~~l~~--------------~~qil--------------------------------------- 578 (838)
....+..+...+.. +.+.+
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 11122222222211 11112
Q ss_pred -----------------------------------------------------------------------------EEe
Q psy12983 579 -----------------------------------------------------------------------------LFS 581 (838)
Q Consensus 579 -----------------------------------------------------------------------------~lS 581 (838)
+||
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 222
Q ss_pred eecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHH
Q psy12983 582 ATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHH 659 (838)
Q Consensus 582 AT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~ 659 (838)
.|......++...+.. ..+.++.. . +....-....++.....|..++...+.. ..+.|+||||+|++.++.++
T Consensus 387 GTa~te~~Ef~~iY~l---~Vv~IPtn-k-p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 387 GTADTEAYEFQQIYNL---EVVVIPTN-R-SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred CCChhHHHHHHHHhCC---CEEECCCC-C-CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 2222111111111110 00111100 0 0000001112334455666666666643 37889999999999999999
Q ss_pred HHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC-----------------------------
Q psy12983 660 ELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA----------------------------- 710 (838)
Q Consensus 660 ~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~----------------------------- 710 (838)
+.|.+.+++...+||++.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999995 9999999999999851
Q ss_pred ---------ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 711 ---------VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 711 ---------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
==+||--..+.|..-=.|..||+||. |.+|.+-+|++-+|.
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQ-GDPGss~f~lSleD~ 589 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQ-GDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccC-CCCCceEEEEEcCcH
Confidence 12567666777888889999999996 899999999987663
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=5.3e-26 Score=232.67 Aligned_cols=201 Identities=45% Similarity=0.737 Sum_probs=175.9
Q ss_pred hhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 396 FEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 396 f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
|++++ +++.+.+.+.++|+..|+++|.++++.+.+++++++++|||+|||++|++|++..+.... ...+.+++|++
T Consensus 1 ~~~~~--~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--~~~~~~viii~ 76 (203)
T cd00268 1 FEELG--LSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--KKDGPQALILA 76 (203)
T ss_pred CCcCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--ccCCceEEEEc
Confidence 34555 889999999999999999999999999999999999999999999999999999886621 12467899999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcc
Q psy12983 476 PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRI 555 (838)
Q Consensus 476 Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l 555 (838)
|+++|+.|+...++.+....+..+..++|+.........+.++++|+|+||+++.+++.+.. ..+++++++|+||+|++
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRM 155 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHh
Confidence 99999999999999988777888888899888777666666689999999999999888765 66789999999999999
Q ss_pred cccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeE
Q psy12983 556 LDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVY 602 (838)
Q Consensus 556 ~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~ 602 (838)
.+.++...+..+.+.++...|++++|||+++....+....+. ++.+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~-~~~~ 201 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLR-NPVR 201 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCC-CCEE
Confidence 988899999999999998999999999999988888777664 4443
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.3e-25 Score=263.17 Aligned_cols=318 Identities=21% Similarity=0.240 Sum_probs=242.9
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 412 ADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 412 ~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
..+|| .+-++|++++..+.+|.+++++||||+|||+++..++...+. ++.+++|.+|.++|.+|.++.+...
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-------~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-------DGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-------cCCceEeccchhhhhhhHHHHHHHH
Confidence 35889 999999999999999999999999999999999988888774 4677999999999999999998887
Q ss_pred hhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 492 MKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
+....-.+++++|+.+. ...+.++|+|.+.|.+.+.... ..+.++..||+||+|.+.+...+...++++-.+
T Consensus 186 fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGS-ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCc-ccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 66443345667776554 3567899999999999888774 456899999999999999998889999999999
Q ss_pred CccceEEEEeeecccchHHHHHHHcc-CCCeEEEecCccccccccceeeEEEEC-------Cchh---------------
Q psy12983 572 PKRRQTMLFSATTTAKTETLTKLALK-KEPVYIGVDDTKEEATVAGLEQGYVVC-------PSEK--------------- 628 (838)
Q Consensus 572 ~~~~qil~lSAT~~~~~~~l~~~~l~-~~~~~i~~~~~~~~~~~~~l~~~~~~~-------~~~~--------------- 628 (838)
|..++++++|||.++..+--.|.... ..+.++...+. + +..+.+++... +...
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~-R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEH-R---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecC-C---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 99999999999999887766666532 23333322211 1 11111111111 0000
Q ss_pred --------------------------------HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC-----------
Q psy12983 629 --------------------------------RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI----------- 665 (838)
Q Consensus 629 --------------------------------k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~----------- 665 (838)
+...+...+.....-++|+|+-++..|+..+..+..+
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 0112333344445568999999999999888776521
Q ss_pred -----------------CC-------------CeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE
Q psy12983 666 -----------------DL-------------PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV 715 (838)
Q Consensus 666 -----------------~~-------------~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI 715 (838)
++ .++++|++|-+..|..+...|..|-.+|+++|.+++.|+|.|.-++|+
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~ 493 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF 493 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee
Confidence 11 356899999999999999999999999999999999999999977766
Q ss_pred ----EeCC----CCCHHHHHHHhcccCcCC-CCccEEEEEecc
Q psy12983 716 ----QYDP----PDDPKEYIHRVGRTARGE-GSSGHALLILRP 749 (838)
Q Consensus 716 ----~~d~----p~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~ 749 (838)
.+|- +-+...|+|+.|||||.| ...|.+++.-.+
T Consensus 494 ~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 494 TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 2332 237899999999999963 455777777444
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.2e-24 Score=250.07 Aligned_cols=319 Identities=20% Similarity=0.258 Sum_probs=230.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .|+++|.-+.-.+.+|+ |..+.||+|||+++.+|++..... |.++-+++|+--||.|.++++..++.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-------G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-------GKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-------CCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 677 89999988776666665 999999999999999999877644 88899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcC-----cccccCCceEEEEeCCCccccc---------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNT-----PEFLYKNLQCLIIDEADRILDI--------- 558 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-----~~~~~~~l~lvViDEah~l~~~--------- 558 (838)
.++++++++.++.+..+.... -.+||+++|...| .++|+.. .....+.+.+.||||+|.++=.
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecC
Confidence 999999999887766554333 3579999998766 2333332 1122356889999999975410
Q ss_pred ----C---cHHHHHHHHHHCCc----------------------------------------------------------
Q psy12983 559 ----G---FEEDMKQIVNLLPK---------------------------------------------------------- 573 (838)
Q Consensus 559 ----g---f~~~~~~il~~l~~---------------------------------------------------------- 573 (838)
+ +...+..+...+..
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 0 11111111111100
Q ss_pred ----------------------------------------------------------------------cceEEEEeee
Q psy12983 574 ----------------------------------------------------------------------RRQTMLFSAT 583 (838)
Q Consensus 574 ----------------------------------------------------------------------~~qil~lSAT 583 (838)
..++.+||.|
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGT 384 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGT 384 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCC
Confidence 0023444444
Q ss_pred cccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHH
Q psy12983 584 TTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHEL 661 (838)
Q Consensus 584 ~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~ 661 (838)
......++...+.- ..+.++... +....-....+......|...+...+... .+.++||||+|+..++.+++.
T Consensus 385 a~~e~~Ef~~iY~l---~vv~IPtnk--p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 385 AKTEEEEFREIYNM---EVITIPTNR--PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CHHHHHHHHHHhCC---CEEEcCCCC--CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 43333333332211 111122111 00000111233444566777887777543 788999999999999999999
Q ss_pred hhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC---Ccc-----EEEEeCCCCCHHHHHHHhccc
Q psy12983 662 LNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP---AVD-----WIVQYDPPDDPKEYIHRVGRT 733 (838)
Q Consensus 662 L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRa 733 (838)
|.+.+++...+||++.+.++..+.+.++.|. |+|||++++||+||+ ++. +||+++.|.+...|.|++||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888777777 999999999999994 888 999999999999999999999
Q ss_pred CcCCCCccEEEEEeccCch
Q psy12983 734 ARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 734 gR~~g~~g~~i~l~~~~e~ 752 (838)
||. |.+|.+.+|++.+|.
T Consensus 538 GRq-G~~G~s~~~~sleD~ 555 (796)
T PRK12906 538 GRQ-GDPGSSRFYLSLEDD 555 (796)
T ss_pred ccC-CCCcceEEEEeccch
Confidence 997 999999999998763
No 94
>KOG0948|consensus
Probab=99.94 E-value=8.6e-26 Score=250.19 Aligned_cols=327 Identities=20% Similarity=0.253 Sum_probs=244.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+.| ++-|+|..+|..+-++.+++|+|.|.+|||.+|..++...+.. ..+|+|..|-++|.+|.++.+..-++
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-------kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-------KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-------cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 566 8999999999999999999999999999999999999888744 78999999999999999988887654
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
.|++.+|+.+. ...+..+|+|.+.|...+.++..+ ++.+..||+||+|.|-+...+...++-+-.+|+
T Consensus 198 ----DVGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 198 ----DVGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred ----ccceeecceee-------CCCCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccccceeeeeeEEeccc
Confidence 35566676544 234678999999999998888655 589999999999999998877777777778899
Q ss_pred cceEEEEeeecccchHHHHHH-HccCCCeEEEecCcccccc-----ccceeeEEEECCch-----hHHHH----------
Q psy12983 574 RRQTMLFSATTTAKTETLTKL-ALKKEPVYIGVDDTKEEAT-----VAGLEQGYVVCPSE-----KRFLL---------- 632 (838)
Q Consensus 574 ~~qil~lSAT~~~~~~~l~~~-~l~~~~~~i~~~~~~~~~~-----~~~l~~~~~~~~~~-----~k~~~---------- 632 (838)
+.+.+++|||+|+..+-..|. .++..|..+...+....+. +.+-...|.+++.. +.+..
T Consensus 266 ~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 999999999999987766664 3444554443322211110 00011112222111 11111
Q ss_pred ----------------------------HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC-------------------
Q psy12983 633 ----------------------------LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI------------------- 665 (838)
Q Consensus 633 ----------------------------l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~------------------- 665 (838)
+...+-.+...++|||+-++++|+.+|-.+.++
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 222222334458999999999999999777653
Q ss_pred --------------------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eCCC-
Q psy12983 666 --------------------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YDPP- 720 (838)
Q Consensus 666 --------------------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d~p- 720 (838)
.-++.++|+|+-+--++-+.-.|.+|-+++|+||..++.|+|.|+-.+|+- ||.-
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~ 505 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKK 505 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcc
Confidence 125789999999999999999999999999999999999999999777763 3322
Q ss_pred ---CCHHHHHHHhcccCcCC-CCccEEEEEecc-CchHHHHHHHH
Q psy12983 721 ---DDPKEYIHRVGRTARGE-GSSGHALLILRP-EELGFLRYLKQ 760 (838)
Q Consensus 721 ---~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~-~e~~~~~~l~~ 760 (838)
-+.-.|+||.|||||.| ...|.++++++. -+....+.+.+
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 26678999999999964 467888888876 33444444443
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9.3e-24 Score=247.15 Aligned_cols=318 Identities=19% Similarity=0.269 Sum_probs=237.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHH-HHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAV-ELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l-~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.|. .|+++|.-..-.+.+|+ |..+.||+|||++|.+|++ ..+ .|..+-|++||..||.|.++++..++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL--------~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL--------TGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH--------cCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 677 89999988776665554 9999999999999999996 444 24567899999999999999999999
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCcc-----cccCCceEEEEeCCCcccccC-------
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTPE-----FLYKNLQCLIIDEADRILDIG------- 559 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~~-----~~~~~l~lvViDEah~l~~~g------- 559 (838)
...+++++++.++.+..+..... .++|+++||++| .++++.... ...+.+.++||||+|+++=..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999988877665544 489999999999 888876532 235778999999999854100
Q ss_pred ---------cHHHHHHHHHHCCc---------------------------------------------------------
Q psy12983 560 ---------FEEDMKQIVNLLPK--------------------------------------------------------- 573 (838)
Q Consensus 560 ---------f~~~~~~il~~l~~--------------------------------------------------------- 573 (838)
+...+..+...+..
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 11111111111100
Q ss_pred ------------------------------------------------------------cceEEEEeeecccchHHHHH
Q psy12983 574 ------------------------------------------------------------RRQTMLFSATTTAKTETLTK 593 (838)
Q Consensus 574 ------------------------------------------------------------~~qil~lSAT~~~~~~~l~~ 593 (838)
..++.+||.|......++..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 01345666666554444444
Q ss_pred HHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEE
Q psy12983 594 LALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMC 671 (838)
Q Consensus 594 ~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~ 671 (838)
.+.- ..+.++... .... .-....+......|...+...+.. ..+.++||||+|+..++.+++.|.+.+++...
T Consensus 385 iY~l---~vv~IPtnk-p~~r-~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 385 IYNL---DVVVIPTNR-PMIR-IDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HhCC---CEEEcCCCC-Ceee-eeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 4321 122222211 1110 011123444556788888888865 57789999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc--------------------------------------cE
Q psy12983 672 IHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV--------------------------------------DW 713 (838)
Q Consensus 672 lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v--------------------------------------~~ 713 (838)
+||. +.+|+..+..|..+...|+|||++++||+||+=- =+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9996 7789999999999999999999999999999642 26
Q ss_pred EEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 714 IVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 714 VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
||.-..+.|..--.|..||+||. |.+|.+-+|++-+|.
T Consensus 538 VigTerhesrRid~QlrGRagRQ-GdpGss~f~lSleD~ 575 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQ-GDPGSSRFYLSLEDD 575 (830)
T ss_pred EEecccCchHHHHHHhhcccccC-CCCCceeEEEEcCcH
Confidence 77777888999999999999997 899999999987663
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.6e-24 Score=266.27 Aligned_cols=308 Identities=18% Similarity=0.217 Sum_probs=197.4
Q ss_pred CCcHHHHHHHHHHHc-----CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 418 KMTEIQARTIPPLLE-----GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~-----~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.++++|.+||..+.+ .++.+++++||||||.+++..+..++.. ....++|||+|+++|+.|+.+.|+.+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 689999999988753 3679999999999999865544444322 345789999999999999999998863
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc----ccccCCceEEEEeCCCcccc------c---C
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP----EFLYKNLQCLIIDEADRILD------I---G 559 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~----~~~~~~l~lvViDEah~l~~------~---g 559 (838)
......+...++...... ........|+|+|..++.+.+.... .+.+..+++||+||||+... . +
T Consensus 488 ~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred cccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 322211111111110010 1112346899999999876543221 13457889999999999531 0 1
Q ss_pred ------cHHHHHHHHHHCCccceEEEEeeecccchHHH-------------HHHHccC---CCeEEEec---------Cc
Q psy12983 560 ------FEEDMKQIVNLLPKRRQTMLFSATTTAKTETL-------------TKLALKK---EPVYIGVD---------DT 608 (838)
Q Consensus 560 ------f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l-------------~~~~l~~---~~~~i~~~---------~~ 608 (838)
+...++.++.++ +...++|||||......+ ...+... .|..+... ..
T Consensus 566 ~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred cchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 235667777765 356899999997543221 1111100 01111110 00
Q ss_pred cccccccceeeEE--EECCch--------hH-------H----HHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--
Q psy12983 609 KEEATVAGLEQGY--VVCPSE--------KR-------F----LLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI-- 665 (838)
Q Consensus 609 ~~~~~~~~l~~~~--~~~~~~--------~k-------~----~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~-- 665 (838)
............+ ...++. .+ . ..+...+.....+++||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 0000000000000 000000 00 0 11222233334579999999999999999887653
Q ss_pred ----C---CCeEEecCCCChhHHHHHHHHHhcCCc-eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 666 ----D---LPVMCIHGKQKQMKRTTTFFQFCNAET-GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 666 ----~---~~v~~lhg~m~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
+ ..+..+||+++ ++..++++|++++. .|+|+++++.+|+|+|.+.+||.++.+.|...|.||+||+.|.
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 1 24567899875 47789999999887 6999999999999999999999999999999999999999995
No 97
>KOG0950|consensus
Probab=99.93 E-value=4.4e-25 Score=252.66 Aligned_cols=342 Identities=21% Similarity=0.202 Sum_probs=246.9
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHHHH--HHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 404 CENTLKAI-ADMGFTKMTEIQARTI--PPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 404 ~~~l~~~l-~~~g~~~~~~~Q~~ai--~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
.+...+.. ..+|...++.||.+++ +.++++++.+..+||+.|||+++.+-++..+.. ..+.++.+.|..+.
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~------~rr~~llilp~vsi 281 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC------RRRNVLLILPYVSI 281 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH------HhhceeEecceeeh
Confidence 33444433 3489999999999998 557889999999999999999999999987765 35678999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc-ccccCCceEEEEeCCCcccccC
Q psy12983 481 SMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP-EFLYKNLQCLIIDEADRILDIG 559 (838)
Q Consensus 481 a~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-~~~~~~l~lvViDEah~l~~~g 559 (838)
+++....+..+....|+.+...+|....... .+..++.|||.|+-..++...- .-.+..+++||+||.|++.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 9999999999998889888877765444322 2345899999999765544321 1235778999999999999999
Q ss_pred cHHHHHHHHHHC-----CccceEEEEeeecccchHHHHHHHccCCCeEEE-ecCc--cccccccceeeEEEECCchhHHH
Q psy12983 560 FEEDMKQIVNLL-----PKRRQTMLFSATTTAKTETLTKLALKKEPVYIG-VDDT--KEEATVAGLEQGYVVCPSEKRFL 631 (838)
Q Consensus 560 f~~~~~~il~~l-----~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~-~~~~--~~~~~~~~l~~~~~~~~~~~k~~ 631 (838)
.+..++.++..+ ....|+++||||+++...--.+ +. ...+.. ..+. .+...... .....+ +..
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~--L~-A~~y~t~fRPv~L~E~ik~G~----~i~~~~--r~~ 428 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDW--LD-AFVYTTRFRPVPLKEYIKPGS----LIYESS--RNK 428 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHH--hh-hhheecccCcccchhccCCCc----ccccch--hhH
Confidence 888877776543 3346899999999974332222 21 111111 0000 00000000 000110 211
Q ss_pred HHHHHH-------------------Hh--cCCCeEEEEecchhhHHHHHHHhhc--------------------------
Q psy12983 632 LLFTFL-------------------KK--NRKKKVMVFFSSCMSVKFHHELLNY-------------------------- 664 (838)
Q Consensus 632 ~l~~~l-------------------~~--~~~~kvIIF~~t~~~~~~l~~~L~~-------------------------- 664 (838)
.+..+- .+ ..+.++||||++++.|+.++..+..
T Consensus 429 ~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 429 VLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred HHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 221111 11 1345799999999999988865542
Q ss_pred ------------CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC----CCCHHHHHH
Q psy12983 665 ------------IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP----PDDPKEYIH 728 (838)
Q Consensus 665 ------------~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~----p~s~~~y~Q 728 (838)
...+++++|++++.++|+.+...|++|-..|++||+.++.|+|+|..+++|..-. ..+..+|.|
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQ 588 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHh
Confidence 1346899999999999999999999999999999999999999999999886332 237889999
Q ss_pred HhcccCcCC-CCccEEEEEeccCchHHHHHHHHcCCC
Q psy12983 729 RVGRTARGE-GSSGHALLILRPEELGFLRYLKQAKIP 764 (838)
Q Consensus 729 r~GRagR~~-g~~g~~i~l~~~~e~~~~~~l~~~~~~ 764 (838)
|+|||||+| +..|.+++++.+.+...+..+.....+
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999974 577999999999998887777665433
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=2e-23 Score=214.16 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=215.3
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
++++.|+.+-..+. +.++.+++|-||+|||....-.+-+.+ ..|.++.+.+|....+.+.+.+++..+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-------~~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-------NQGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-------hcCCeEEEecCcccchHHHHHHHHHhhc
Confidence 68999988776654 468999999999999997544444443 3588999999999999999999988654
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
+..+.+++|+....-. .+++|+|..++++.- +.++++||||+|.+--..-.......-+....
T Consensus 170 --~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 170 --NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred --cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH--------hhccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 4677788887665422 489999988876632 34689999999985432211222223344445
Q ss_pred cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHH------HHHHHHHHhc--CCCeE
Q psy12983 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF------LLLFTFLKKN--RKKKV 645 (838)
Q Consensus 574 ~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~------~~l~~~l~~~--~~~kv 645 (838)
.--.+.+|||+++..+.-... .+...+.++. .-+..+-.+..+....+-.++. ..+..+++.+ .+.++
T Consensus 233 ~g~~IylTATp~k~l~r~~~~---g~~~~~klp~-RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 233 EGATIYLTATPTKKLERKILK---GNLRILKLPA-RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cCceEEEecCChHHHHHHhhh---CCeeEeecch-hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 667899999999755443332 2222333322 1222222233333333322222 1567777765 56899
Q ss_pred EEEecchhhHHHHHHHhhcC-C-CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCC--C
Q psy12983 646 MVFFSSCMSVKFHHELLNYI-D-LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP--D 721 (838)
Q Consensus 646 IIF~~t~~~~~~l~~~L~~~-~-~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p--~ 721 (838)
+||+++....+.+++.|++. + ..++..|+. ...|.+.++.|++|+.++|++|++++||+.+|++++.|.-.-- .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999543 3 345778875 4468999999999999999999999999999999987754433 4
Q ss_pred CHHHHHHHhcccCcCC-CCccEEEEEeccCchHHH
Q psy12983 722 DPKEYIHRVGRTARGE-GSSGHALLILRPEELGFL 755 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~e~~~~ 755 (838)
+-+.++|.+||+||.- ...|..++|-.-....+.
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 8899999999999943 345777777555544433
No 99
>KOG0338|consensus
Probab=99.92 E-value=6.8e-27 Score=249.59 Aligned_cols=165 Identities=23% Similarity=0.293 Sum_probs=150.1
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
+||||+|+.||.+|+|.||+||||||| ++|||+|+|+|.+++|++|| ||+-||.+++.+|+..+
T Consensus 286 ~vGGL~lk~QE~~LRs~PDIVIATPGR------lIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc---- 355 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSRPDIVIATPGR------LIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC---- 355 (691)
T ss_pred eecCccHHHHHHHHhhCCCEEEecchh------HHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc----
Confidence 589999999999999999999999999 99999999999999999999 99999999999999999
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc---chHHHHHHHHH
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS---EKRFLLLFTFL 239 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~---~~K~~~L~~ll 239 (838)
|+.||||||||||+++|++|+...|+ +|++|.++. ...+...++|.|+.+.. .++..+|..++
T Consensus 356 -----------pk~RQTmLFSATMteeVkdL~slSL~-kPvrifvd~--~~~~a~~LtQEFiRIR~~re~dRea~l~~l~ 421 (691)
T KOG0338|consen 356 -----------PKNRQTMLFSATMTEEVKDLASLSLN-KPVRIFVDP--NKDTAPKLTQEFIRIRPKREGDREAMLASLI 421 (691)
T ss_pred -----------cccccceeehhhhHHHHHHHHHhhcC-CCeEEEeCC--ccccchhhhHHHheeccccccccHHHHHHHH
Confidence 99999999999999999999999999 999987754 44666779999998864 46889999999
Q ss_pred hhCCCCCeeeeHHhhh---------hcCCceeEEeeCCCChhhhHHH
Q psy12983 240 KKNHIGEIVAWHVLLL---------QVIKIKVQTRIGKEDFVTSVRN 277 (838)
Q Consensus 240 ~~~~~~~~iVF~~~~l---------~~~~~~~~~~hg~~~~~~~~~~ 277 (838)
+......+|||+.+.. .-+|++|..+||.++.-+.++-
T Consensus 422 ~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 422 TRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred HHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 9888899999976654 4568999999999999988874
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.7e-22 Score=235.87 Aligned_cols=144 Identities=18% Similarity=0.342 Sum_probs=123.7
Q ss_pred CCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEE
Q psy12983 403 VCENTLKAIA-----DMGFTKM---TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474 (838)
Q Consensus 403 l~~~l~~~l~-----~~g~~~~---~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl 474 (838)
+..++.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+.. +..++||
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~v~IV 141 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKPVHLV 141 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCCeEEE
Confidence 6666666665 5789888 99999999999999999999999999999999999987643 2348999
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCccccc-------CCceE
Q psy12983 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTPEFLY-------KNLQC 546 (838)
Q Consensus 475 ~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~~~~~-------~~l~l 546 (838)
+||++||.|..+++..+....++++.+++||.+...+...+ +++|+||||++| .++++... +.+ +.+.+
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~-~~~~~~~~vqr~~~~ 218 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNS-IATRKEEQVGRGFYF 218 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCC-CCcCHHHhhcccccE
Confidence 99999999999999999999999999999999888776554 589999999999 99988763 222 35689
Q ss_pred EEEeCCCccc
Q psy12983 547 LIIDEADRIL 556 (838)
Q Consensus 547 vViDEah~l~ 556 (838)
+||||||.++
T Consensus 219 ~IIDEADsmL 228 (970)
T PRK12899 219 AIIDEVDSIL 228 (970)
T ss_pred EEEechhhhh
Confidence 9999999865
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=9.9e-22 Score=229.43 Aligned_cols=319 Identities=19% Similarity=0.233 Sum_probs=222.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-.--.+.+ .-|..++||.|||++|.+|++..... +..|.||+|+..||.|..+++..++.
T Consensus 79 lgm-~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~-------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT-------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred hCC-CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 566 788888765544444 45899999999999999999876543 56699999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCcccc-----cCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTPEFL-----YKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~~~~-----~~~l~lvViDEah~l~~~g-------- 559 (838)
.++++++++.++.+..+. .-.-.++|++|||+.| .++++..-... .+.+.++||||+|.++-..
T Consensus 149 ~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred hcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 999999999888776432 2233689999999999 88877652222 2678999999999865321
Q ss_pred --------cHHHHHHHHHHCC-------------------ccceEEEE--------------------------------
Q psy12983 560 --------FEEDMKQIVNLLP-------------------KRRQTMLF-------------------------------- 580 (838)
Q Consensus 560 --------f~~~~~~il~~l~-------------------~~~qil~l-------------------------------- 580 (838)
+...+..+...+. .+.+.+-+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 1111111111111 01111212
Q ss_pred --------------------------------------------------------------------------------
Q psy12983 581 -------------------------------------------------------------------------------- 580 (838)
Q Consensus 581 -------------------------------------------------------------------------------- 580 (838)
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence
Q ss_pred ----eeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhh
Q psy12983 581 ----SATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMS 654 (838)
Q Consensus 581 ----SAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~ 654 (838)
|.|......++...+.. . .+.++... +....-....++.....|..++..-+.. ..+.++||||+|+..
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l-~--Vv~IPTnk--p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGL-D--TVVVPTNR--PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhcccCCChHHHHHHHHHhCC-C--EEECCCCC--CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 11111111111111100 0 00000000 0000000112223345566666665553 368899999999999
Q ss_pred HHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC------------------------
Q psy12983 655 VKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA------------------------ 710 (838)
Q Consensus 655 ~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~------------------------ 710 (838)
++.++..|.+.++....+|+++.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999951
Q ss_pred -------------ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 711 -------------VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 711 -------------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
==+||--..+.|..-=.|..||+||. |.+|.+-+|++-+|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ-GDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ-GDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC-CCCCceeEEEEeCcH
Confidence 12677777788888889999999996 899999999987764
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=2.5e-23 Score=206.09 Aligned_cols=164 Identities=33% Similarity=0.509 Sum_probs=141.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeE
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTY 499 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v 499 (838)
||+|.++++.+.+++++++.+|||+|||++|+++++..+.+ ....++++++|+++|+.|+.+.+..++...+..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-----~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-----GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-----CCCceEEEEeeccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999998866 2335999999999999999999999988777888
Q ss_pred EEEeCCcchH-HHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc--cce
Q psy12983 500 GLIMGGASRQ-AEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK--RRQ 576 (838)
Q Consensus 500 ~~l~gg~~~~-~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~--~~q 576 (838)
..++++.... .....+.++++|+|+||++|.+.+..... .+.++++||+||+|.+..+++...+..++..+.. +.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 8889888755 44455566799999999999999988544 5567999999999999998888889988888733 589
Q ss_pred EEEEeeecccchH
Q psy12983 577 TMLFSATTTAKTE 589 (838)
Q Consensus 577 il~lSAT~~~~~~ 589 (838)
++++|||++..++
T Consensus 155 ~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 155 IILLSATLPSNVE 167 (169)
T ss_dssp EEEEESSSTHHHH
T ss_pred EEEEeeCCChhHh
Confidence 9999999995544
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=4.4e-22 Score=238.89 Aligned_cols=335 Identities=21% Similarity=0.172 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHHcC---C-CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLEG---R-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~---~-dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..++.|..++..+.+. . .+++.||||+|||++++.+++..+... .....+++++.|++.++.++++.++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 3489999999887753 4 789999999999999999999887552 12578899999999999999999998876
Q ss_pred hcCCeEEEEeCCcchHHHHHH-----H---------hcCCcEEEcChHHHHHHHhcCcccc-cC--CceEEEEeCCCccc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQK-----L---------AKGINIIVATPGRLLDHLQNTPEFL-YK--NLQCLIIDEADRIL 556 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~-----l---------~~~~~IvV~Tp~~l~~~l~~~~~~~-~~--~l~lvViDEah~l~ 556 (838)
........+++.......... . .....+.++||-...........+. +. ..+++|+||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 654433322332221111100 0 0113555666655544211111111 11 23689999999988
Q ss_pred ccCcHHHHHHHHHHC-CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHH
Q psy12983 557 DIGFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFT 635 (838)
Q Consensus 557 ~~gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ 635 (838)
+......+..++..+ ..+..+++||||+|+...+..........................+.+.....-..........
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 773222222222222 2378899999999998777666555433222211110000000111111111000000001111
Q ss_pred --HHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHh----cCCceEEEEccCCccCCCCC
Q psy12983 636 --FLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFC----NAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 636 --~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~----~g~~~VLVaT~~~~~GiDip 709 (838)
......+++++|.|||++.|.++++.|+..+..+..+||.+...+|.+.++++. .+...|+|||++++.|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 122346789999999999999999999998778999999999999999888654 56788999999999999994
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCC-CccEEEEEeccCchHHHHHH
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEG-SSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g-~~g~~i~l~~~~e~~~~~~l 758 (838)
.+++|-- +..+.+++||+||++|.|+ ..|..+++............
T Consensus 512 -fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~ 558 (733)
T COG1203 512 -FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYS 558 (733)
T ss_pred -cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhh
Confidence 6777654 4458899999999999732 56777777666554444333
No 104
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.87 E-value=1.6e-20 Score=226.74 Aligned_cols=319 Identities=17% Similarity=0.208 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+++++|.+++..+. .+.+.|+...+|.|||+.++..+ ..+... ......+|||||. ++..||.+.+.++..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~---~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEY---RGITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHh---cCCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 78999999998875 46789999999999999764433 333221 1234568999996 667889988988764
Q ss_pred hcCCeEEEEeCCcchHHHHH---HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQ---KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL 570 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~---~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~ 570 (838)
...+..++|......... ......+|+|+|++.+...... +.--.+++||+||||++.+.. ......+..
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 345555566443322211 1123579999999998654322 112347899999999987743 334444555
Q ss_pred CCccceEEEEeeecccch-HHHHHHHccCCCeEEEe----------cC------------------------cccccccc
Q psy12983 571 LPKRRQTMLFSATTTAKT-ETLTKLALKKEPVYIGV----------DD------------------------TKEEATVA 615 (838)
Q Consensus 571 l~~~~qil~lSAT~~~~~-~~l~~~~l~~~~~~i~~----------~~------------------------~~~~~~~~ 615 (838)
+.. ...+++|+||..+. .++....-...|..+.. .. ......+.
T Consensus 317 L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 543 34578999986422 11111100000000000 00 00000000
Q ss_pred ceeeEEEEC---------------------------------------------------------------CchhHHHH
Q psy12983 616 GLEQGYVVC---------------------------------------------------------------PSEKRFLL 632 (838)
Q Consensus 616 ~l~~~~~~~---------------------------------------------------------------~~~~k~~~ 632 (838)
......+.+ ....|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000000000 01123333
Q ss_pred HHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC---CceEEEEccCCccCCC
Q psy12983 633 LFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA---ETGILLCTDVAARGLD 707 (838)
Q Consensus 633 l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g---~~~VLVaT~~~~~GiD 707 (838)
+..++.. ..+.++|||+........+.+.|...++....+||+++..+|..+++.|.+. ...+|++|.+.+.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 4444433 2567999999999999999999999999999999999999999999999753 3457899999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE--EEEEeccC
Q psy12983 708 IPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH--ALLILRPE 750 (838)
Q Consensus 708 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~~~ 750 (838)
+..+++||+||.++++....|++||+.|. |+... +|.|+...
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRI-GQkk~V~VyRLIt~g 599 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRI-GQKKEVQVFRFCTEY 599 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhc-CCCceEEEEEEEeCC
Confidence 99999999999999999999999999997 55544 44455553
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.6e-20 Score=218.36 Aligned_cols=319 Identities=19% Similarity=0.269 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 417 TKMTEIQARTIPPLLEG----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~----~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
..+++-|+.++..+.+. ...++.+.||||||.+|+-.+-+.+. .|+++|+|+|-++|..|+.+.|+.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-------~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-------QGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-------cCCEEEEEeccccchHHHHHHHHHHh
Confidence 36899999999998765 67999999999999999888888774 48999999999999999999998876
Q ss_pred hhcCCeEEEEeCCcchH---HHHHHHh-cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc---C---cHH
Q psy12983 493 KYHHHTYGLIMGGASRQ---AEAQKLA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI---G---FEE 562 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~---~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~---g---f~~ 562 (838)
. ..+..++++-+.. +.|.... +...||||| ++.-...++++++|||||.|--+-. + ...
T Consensus 270 g---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 270 G---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred C---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 4 6677777665543 3444444 458999999 1111235799999999999964322 1 222
Q ss_pred HHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch-hH-----HHHHHHH
Q psy12983 563 DMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-KR-----FLLLFTF 636 (838)
Q Consensus 563 ~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~k-----~~~l~~~ 636 (838)
++..... -..+.++++-||||+-+.......+ ....+.+...........+. ++....+ .+ -..++..
T Consensus 339 dvA~~Ra-~~~~~pvvLgSATPSLES~~~~~~g---~y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 339 DVAVLRA-KKENAPVVLGSATPSLESYANAESG---KYKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred HHHHHHH-HHhCCCEEEecCCCCHHHHHhhhcC---ceEEEEccccccccCCCcce--EEeccccccccCccCCHHHHHH
Confidence 3332222 2347899999999986554444322 12233332222212111111 1211111 11 1344455
Q ss_pred HHh--cCCCeEEEEecchhh------------------------------------------------------------
Q psy12983 637 LKK--NRKKKVMVFFSSCMS------------------------------------------------------------ 654 (838)
Q Consensus 637 l~~--~~~~kvIIF~~t~~~------------------------------------------------------------ 654 (838)
++. ..+.++|+|.|++--
T Consensus 413 i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~G 492 (730)
T COG1198 413 IRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPG 492 (730)
T ss_pred HHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEeccc
Confidence 533 367788888876421
Q ss_pred HHHHHHHhhcC--CCCeEEecCCCChhH--HHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC---------
Q psy12983 655 VKFHHELLNYI--DLPVMCIHGKQKQMK--RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD--------- 721 (838)
Q Consensus 655 ~~~l~~~L~~~--~~~v~~lhg~m~~~~--R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~--------- 721 (838)
++++++.|.+. +.++..+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|++..|...|...
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 22333333333 456777777665543 56789999999999999999999999999999988766552
Q ss_pred ---CHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 722 ---DPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 722 ---s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
....+.|-.|||||+ +..|.+++-...-|...++.+.+
T Consensus 573 ~Er~fqll~QvaGRAgR~-~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 573 SERTFQLLMQVAGRAGRA-GKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHHHHHhhhccC-CCCCeEEEEeCCCCcHHHHHHHh
Confidence 456789999999997 78999988877777666666554
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=6.3e-21 Score=224.85 Aligned_cols=307 Identities=20% Similarity=0.250 Sum_probs=221.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh-cCCe
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY-HHHT 498 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~-~~~~ 498 (838)
+....+.+..+.+++-++|+|+||||||...-..+++.- + ..+..+.+.-|.|--|..+++.+.+.+.. .+-.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g----~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG----L--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh----c--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 556677777888889999999999999975333333321 1 34567888899998888888877776544 3556
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcc-cccCcH-HHHHHHHHHCCccce
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRI-LDIGFE-EDMKQIVNLLPKRRQ 576 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l-~~~gf~-~~~~~il~~l~~~~q 576 (838)
|+......+.. .....|-++|.|.|++.+.... .++.+++|||||+|.= .+.+|. ..++.++...+++.+
T Consensus 126 VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 126 VGYSIRFESKV------SPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeEEEEeeccC------CCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 66655544332 2345899999999999988775 3689999999999962 222222 334556677777899
Q ss_pred EEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEE-CCchh-HHHHHH---HHHHhcCCCeEEEEecc
Q psy12983 577 TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVV-CPSEK-RFLLLF---TFLKKNRKKKVMVFFSS 651 (838)
Q Consensus 577 il~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~~~-k~~~l~---~~l~~~~~~kvIIF~~t 651 (838)
+|.||||+.. +.+...+. +...+.++...- .++.+|.. ...+. -...+. ........+.+|||.+.
T Consensus 198 iIimSATld~--~rfs~~f~--~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG 268 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFG--NAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPG 268 (845)
T ss_pred EEEEecccCH--HHHHHHcC--CCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCc
Confidence 9999999985 44554433 333444432211 11222311 11222 222232 23334467899999999
Q ss_pred hhhHHHHHHHhhc--C--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC--------
Q psy12983 652 CMSVKFHHELLNY--I--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP-------- 719 (838)
Q Consensus 652 ~~~~~~l~~~L~~--~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~-------- 719 (838)
..+++.+++.|.+ + ...+..+||.|+.+++.++++--..|+.+|++||++++++|.||++.+||.-+.
T Consensus 269 ~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 269 QREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 9999999999997 3 477899999999999999998888888889999999999999999999996442
Q ss_pred ----------CCCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 720 ----------PDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 720 ----------p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
|-|-++..||.|||||. ..|.||-+|+.++
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~--~pGicyRLyse~~ 388 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRT--GPGICYRLYSEED 388 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccC--CCceEEEecCHHH
Confidence 23778899999999995 7899999998754
No 107
>KOG0342|consensus
Probab=99.86 E-value=2.5e-22 Score=215.19 Aligned_cols=164 Identities=33% Similarity=0.469 Sum_probs=148.2
Q ss_pred HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccc
Q psy12983 90 VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPN 163 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~d 163 (838)
+||-....-+--+.+.+..++||||| |+||++||++|...+++||| +|++||.+|++.|+..+
T Consensus 190 iGG~~~~~e~~kl~k~~niliATPGR------LlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l----- 258 (543)
T KOG0342|consen 190 IGGNNFSVEADKLVKGCNILIATPGR------LLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL----- 258 (543)
T ss_pred eCCccchHHHHHhhccccEEEeCCch------HHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhc-----
Confidence 56666666666677789999999999 99999999999999999999 99999999999999999
Q ss_pred cccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCC
Q psy12983 164 LTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNH 243 (838)
Q Consensus 164 l~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~ 243 (838)
|+.|||+|||||+|++|+++++..|+++|++|++..+.+..++++++|.|+.++.+.++.+|..+|++..
T Consensus 259 ----------pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~ 328 (543)
T KOG0342|consen 259 ----------PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNI 328 (543)
T ss_pred ----------cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhc
Confidence 9999999999999999999999999878999999888889999999999999999999999999999877
Q ss_pred C-CCeeeeHHh---------hhhcCCceeEEeeCCCChhhh
Q psy12983 244 I-GEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 244 ~-~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~ 274 (838)
. .++|||+.+ .|+..+++|..+||+++.-..
T Consensus 329 ~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 329 KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKR 369 (543)
T ss_pred CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCccccc
Confidence 6 899999654 457889999999999876543
No 108
>KOG0330|consensus
Probab=99.85 E-value=2.8e-22 Score=208.84 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=150.7
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
||||.|.-.|--=+-.-|++++||||+ |+||+.+|.+|+++.+++|| +||+.|.+.+..|+..+
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGr------L~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i---- 232 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGR------LWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI---- 232 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHH------HHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc----
Confidence 689999988888888999999999999 99999999999999999999 99999999999999999
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 242 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~ 242 (838)
|.+|||+|||||||++|.+|....++ +|+.|.+ .+...+.++++|+|++++.++|..+|.+++++.
T Consensus 233 -----------p~erqt~LfsATMt~kv~kL~rasl~-~p~~v~~--s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~ 298 (476)
T KOG0330|consen 233 -----------PRERQTFLFSATMTKKVRKLQRASLD-NPVKVAV--SSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL 298 (476)
T ss_pred -----------CccceEEEEEeecchhhHHHHhhccC-CCeEEec--cchhcchHHhhhheEeccccccchhHHHHHHhh
Confidence 89999999999999999999999999 9999544 567788899999999999999999999999998
Q ss_pred CCCCeeeeHHhh---------hhcCCceeEEeeCCCChhhhHH
Q psy12983 243 HIGEIVAWHVLL---------LQVIKIKVQTRIGKEDFVTSVR 276 (838)
Q Consensus 243 ~~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~~~~~~ 276 (838)
...+.||||+++ |+.+|+.+..|||+|+.-..+.
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLG 341 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHH
Confidence 889999997665 4778999999999998776655
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.84 E-value=4e-19 Score=192.31 Aligned_cols=166 Identities=21% Similarity=0.261 Sum_probs=125.9
Q ss_pred cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecc
Q psy12983 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSS 651 (838)
Q Consensus 574 ~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t 651 (838)
..|++++||||.+.. +..... ..+.-.+.+..- +.-...+-+.....+.|+.-++. ..+.+++|-+-|
T Consensus 386 ~~q~i~VSATPg~~E--~e~s~~--~vveQiIRPTGL------lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLT 455 (663)
T COG0556 386 IPQTIYVSATPGDYE--LEQSGG--NVVEQIIRPTGL------LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLT 455 (663)
T ss_pred cCCEEEEECCCChHH--HHhccC--ceeEEeecCCCC------CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeeh
Confidence 358999999998732 222211 111111111110 01112233334445555555543 356899999999
Q ss_pred hhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCC-----CCHHHH
Q psy12983 652 CMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP-----DDPKEY 726 (838)
Q Consensus 652 ~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p-----~s~~~y 726 (838)
++.++.+.++|.+.|+++.++|++...-+|.+++++++.|.++|||.-+.+-+|+|+|.|..|..+|+. .|-.++
T Consensus 456 KkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 456 KKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876 489999
Q ss_pred HHHhcccCcCCCCccEEEEEeccCc
Q psy12983 727 IHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 727 ~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
+|-+|||+| +-.|.++++.+.-.
T Consensus 536 IQtIGRAAR--N~~GkvIlYAD~iT 558 (663)
T COG0556 536 IQTIGRAAR--NVNGKVILYADKIT 558 (663)
T ss_pred HHHHHHHhh--ccCCeEEEEchhhh
Confidence 999999999 47899999877533
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=6.5e-19 Score=207.13 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCcc
Q psy12983 627 EKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAAR 704 (838)
Q Consensus 627 ~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 704 (838)
..+...+...+.. ..+.+++|||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|++.|||||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3455566666654 35779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEeC-----CCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 705 GLDIPAVDWIVQYD-----PPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 705 GiDip~v~~VI~~d-----~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+...+....+.+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~--~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC--CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999988 789999999999999995 5799999999877655555543
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.2e-18 Score=200.99 Aligned_cols=280 Identities=21% Similarity=0.292 Sum_probs=194.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|| .|+..|..-...+.+|+++-+.||||.|||.--++.++-.. ..|+++++|+||+.|+.|.++.++.+..
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-------hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 577 99999999999999999999999999999975443333322 3578999999999999999999999987
Q ss_pred hcC-CeEEE-EeCCc---chHHHHHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHH-HTYGL-IMGGA---SRQAEAQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~-~~v~~-l~gg~---~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
..+ ..+.. .++.. ..++....+.+ ..||+|+|..-|...+..-. -.++++|++|.+|.++..+
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEEccHHHHHhccccHHHHHH
Confidence 665 33333 23322 22333444544 58999999877765554322 1468999999999765432
Q ss_pred ---cHHH-------HHHHHHHC------------------------CccceEEEEeeecccchHH--HHHHHccCCCeEE
Q psy12983 560 ---FEED-------MKQIVNLL------------------------PKRRQTMLFSATTTAKTET--LTKLALKKEPVYI 603 (838)
Q Consensus 560 ---f~~~-------~~~il~~l------------------------~~~~qil~lSAT~~~~~~~--l~~~~l~~~~~~i 603 (838)
|..+ +..+...+ .+.-+++..|||..++-.. +....+.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg------ 301 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG------ 301 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC------
Confidence 2221 01111111 1235789999998875422 1111111
Q ss_pred EecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecc---hhhHHHHHHHhhcCCCCeEEecCCCChhH
Q psy12983 604 GVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSS---CMSVKFHHELLNYIDLPVMCIHGKQKQMK 680 (838)
Q Consensus 604 ~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t---~~~~~~l~~~L~~~~~~v~~lhg~m~~~~ 680 (838)
...........++...|... .-......+++.... -.|||++. ++.++.+++.|+..|+++..+|+.
T Consensus 302 -FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~----- 371 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE----- 371 (1187)
T ss_pred -CccCccchhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----
Confidence 11122223344444444444 334445555655544 58999999 999999999999999999999994
Q ss_pred HHHHHHHHhcCCceEEEEc----cCCccCCCCCC-ccEEEEeCCC
Q psy12983 681 RTTTFFQFCNAETGILLCT----DVAARGLDIPA-VDWIVQYDPP 720 (838)
Q Consensus 681 R~~i~~~F~~g~~~VLVaT----~~~~~GiDip~-v~~VI~~d~p 720 (838)
.+..++.|..|++++||.. .++-||+|+|. ++++|.++.|
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3678999999999999975 48899999996 7889988877
No 112
>KOG0922|consensus
Probab=99.84 E-value=2.5e-19 Score=199.81 Aligned_cols=307 Identities=18% Similarity=0.250 Sum_probs=213.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh-hcCCe
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK-YHHHT 498 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~-~~~~~ 498 (838)
..+-.+.+..+.+++-++|.|+||||||.. +| +.+.+..+.. .|. +.+.-|.|--|..++++..+-+. ..|..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~~-~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFAS-SGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhccccc-CCc-EEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 555577788888899999999999999975 44 3343433332 233 88899999888888876665433 34556
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc-C-cHHHHHHHHHHCCccce
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-G-FEEDMKQIVNLLPKRRQ 576 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-g-f~~~~~~il~~l~~~~q 576 (838)
|+......+... ....|.+.|.|.|++.+...+ .++++++||+||||.-.-. + ..-.++.++.. +++.+
T Consensus 127 VGY~IRFed~ts------~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lk 197 (674)
T KOG0922|consen 127 VGYTIRFEDSTS------KDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLK 197 (674)
T ss_pred eeeEEEecccCC------CceeEEEecchHHHHHHhcCC--ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCce
Confidence 665554333221 235899999999999888765 3589999999999962111 0 11222333322 44678
Q ss_pred EEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch----hHHHHHHHHHHhcCCCeEEEEecch
Q psy12983 577 TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE----KRFLLLFTFLKKNRKKKVMVFFSSC 652 (838)
Q Consensus 577 il~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~k~~~l~~~l~~~~~~kvIIF~~t~ 652 (838)
++.||||+.. +.+...+. ....+.+.... -.++..|...+.. .-...+..+....+.+-+|||....
T Consensus 198 lIimSATlda--~kfS~yF~--~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 198 LIIMSATLDA--EKFSEYFN--NAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred EEEEeeeecH--HHHHHHhc--CCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 9999999984 44444443 23333333211 1122223322222 1223334444456778999999999
Q ss_pred hhHHHHHHHhhcC----CC----CeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC-----
Q psy12983 653 MSVKFHHELLNYI----DL----PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP----- 719 (838)
Q Consensus 653 ~~~~~l~~~L~~~----~~----~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~----- 719 (838)
++++.+++.|.+. +- -+..+||.|+.+++.++++.-..|..+|+++|+++++.+.||++.+||.-+.
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999875 11 2467999999999999988888899999999999999999999999995332
Q ss_pred -------------CCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 720 -------------PDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 720 -------------p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
|-|-++-.||.|||||. .+|.||-+|+.++.
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt--~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRT--GPGKCYRLYTESAY 392 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCC--CCceEEEeeeHHHH
Confidence 34788999999999995 78999999988764
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.1e-18 Score=204.85 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=113.3
Q ss_pred ECCchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc
Q psy12983 623 VCPSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD 700 (838)
Q Consensus 623 ~~~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~ 700 (838)
+.....|...+...+... .+.++||||+|++.++.+++.|...+++...+|+ .+.+|+..+..|..+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 344456888888888654 6789999999999999999999999999999997 688999999999999999999999
Q ss_pred CCccCCCCC---Ccc-----EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 701 VAARGLDIP---AVD-----WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 701 ~~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
+++||+||+ .|. +||++..|.+...|.|++||+||. |.+|.+.+|++.+|.-
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRq-GdpGsS~ffvSleD~L 714 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQ-GDPGESVFYVSLEDEL 714 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcC-CCCcceEEEechhHHH
Confidence 999999998 453 348899999999999999999997 9999999999987743
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.82 E-value=4e-19 Score=202.40 Aligned_cols=301 Identities=20% Similarity=0.231 Sum_probs=193.8
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 417 TKMTEIQARTIPPLLE----G-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~----~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
..++++|..||..+.+ | +..++++.||+|||.+++..+..++.. +..+++|+|+-+++|+.|.+..+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHHh
Confidence 3789999999988654 3 459999999999999986555554433 56789999999999999999988887
Q ss_pred hhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC----cccccCCceEEEEeCCCcccccCcHHHHHHH
Q psy12983 492 MKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT----PEFLYKNLQCLIIDEADRILDIGFEEDMKQI 567 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~----~~~~~~~l~lvViDEah~l~~~gf~~~~~~i 567 (838)
... +..+..+.+.... ..+.|.++|..++...+... ..+....+++|||||||+- .....+.+
T Consensus 239 ~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I 305 (875)
T COG4096 239 LPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSI 305 (875)
T ss_pred CCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHH
Confidence 653 2222223221111 14699999999998776654 1233456899999999983 34455577
Q ss_pred HHHCCccceEEEEeeecccchHHHHHHHccCCCeE------------------EEec--Cccccccccc-----------
Q psy12983 568 VNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVY------------------IGVD--DTKEEATVAG----------- 616 (838)
Q Consensus 568 l~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~------------------i~~~--~~~~~~~~~~----------- 616 (838)
+.++....+ ++||||....+.-.-.++...|.+ +.+. .......+..
T Consensus 306 ~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 777644333 339998763322111111112211 1111 0000000000
Q ss_pred e--e-eEE--------EECCc--hhHHHHHHHHHHh--c--CCCeEEEEecchhhHHHHHHHhhcC-----CCCeEEecC
Q psy12983 617 L--E-QGY--------VVCPS--EKRFLLLFTFLKK--N--RKKKVMVFFSSCMSVKFHHELLNYI-----DLPVMCIHG 674 (838)
Q Consensus 617 l--~-~~~--------~~~~~--~~k~~~l~~~l~~--~--~~~kvIIF~~t~~~~~~l~~~L~~~-----~~~v~~lhg 674 (838)
+ . +.+ ..++. +.-...+...+.. . .-+|+||||.+..+|+++...|.+. +--+..+.|
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 0 0 000 00000 0111223344444 2 2579999999999999999999875 233566777
Q ss_pred CCChhHHHHHHHHHhcC--CceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCC
Q psy12983 675 KQKQMKRTTTFFQFCNA--ETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGS 739 (838)
Q Consensus 675 ~m~~~~R~~i~~~F~~g--~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~ 739 (838)
+-.+. ...++.|... -.+|.++.+++.+|+|+|.|..+|.+..-.|...|.||+||+-|..+.
T Consensus 464 d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 464 DAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred cchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcc
Confidence 65443 3445555543 357888999999999999999999999999999999999999994333
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=2.5e-18 Score=204.51 Aligned_cols=302 Identities=19% Similarity=0.180 Sum_probs=182.5
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE----------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
.++++|..|+..+.+ .+..+++++||||||++++..+..++.. ....++|||+|+++|..|+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 378999999988642 2579999999999999887776655432 3467899999999999999999
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHHHhc-CCcEEEcChHHHHHHHhcC-cccccCCc-eEEEEeCCCcccccCcHHHH
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQKLAK-GINIIVATPGRLLDHLQNT-PEFLYKNL-QCLIIDEADRILDIGFEEDM 564 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~-~~~~~~~l-~lvViDEah~l~~~gf~~~~ 564 (838)
|..+..... .+..+.......+.. ...|+|+|.++|...+... ..+....- -+||+||||+.....+.
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~--- 383 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA--- 383 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH---
Confidence 998753211 111233333333333 3689999999997643321 11111111 28999999996533222
Q ss_pred HHHHHHCCccceEEEEeeecccchHH--HHHHHc-cCCCeEE-EecCccccccccceeeEEEE----C------------
Q psy12983 565 KQIVNLLPKRRQTMLFSATTTAKTET--LTKLAL-KKEPVYI-GVDDTKEEATVAGLEQGYVV----C------------ 624 (838)
Q Consensus 565 ~~il~~l~~~~qil~lSAT~~~~~~~--l~~~~l-~~~~~~i-~~~~~~~~~~~~~l~~~~~~----~------------ 624 (838)
..+.+.++ +...++|||||...... ....+. ...+... .+...-+......+...... .
T Consensus 384 ~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 384 KNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 22334444 46799999999643111 111110 0011110 00000000000000000000 0
Q ss_pred --------C-------------------chhHHHHHHHHH----H---hcCCCeEEEEecchhhHHHHHHHhhcC-----
Q psy12983 625 --------P-------------------SEKRFLLLFTFL----K---KNRKKKVMVFFSSCMSVKFHHELLNYI----- 665 (838)
Q Consensus 625 --------~-------------------~~~k~~~l~~~l----~---~~~~~kvIIF~~t~~~~~~l~~~L~~~----- 665 (838)
. .+.....+...+ . ....++.+|||.++.+|..+++.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 0 000011111111 1 112479999999999999999988664
Q ss_pred CCCeEEecCCCChh---------------------HHHHHHHHHhc-CCceEEEEccCCccCCCCCCccEEEEeCCCCCH
Q psy12983 666 DLPVMCIHGKQKQM---------------------KRTTTFFQFCN-AETGILLCTDVAARGLDIPAVDWIVQYDPPDDP 723 (838)
Q Consensus 666 ~~~v~~lhg~m~~~---------------------~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~ 723 (838)
+.....+++..+.. ....++++|++ +..+|||+++.+.+|+|.|.+++++...+..+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 23445666654332 22478889976 67899999999999999999999998776665
Q ss_pred HHHHHHhcccCc
Q psy12983 724 KEYIHRVGRTAR 735 (838)
Q Consensus 724 ~~y~Qr~GRagR 735 (838)
..++|++||+.|
T Consensus 622 h~LlQai~R~nR 633 (667)
T TIGR00348 622 HGLLQAIARTNR 633 (667)
T ss_pred cHHHHHHHHhcc
Confidence 458999999999
No 116
>KOG0920|consensus
Probab=99.82 E-value=2.1e-18 Score=202.52 Aligned_cols=315 Identities=17% Similarity=0.202 Sum_probs=218.8
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH-HhhhcCCe
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE-LMKYHHHT 498 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~-~~~~~~~~ 498 (838)
+..+.+.++.+.+++.++|+|.||+|||...---+++..... ....++++--|.|--|..++++... +....+..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~----~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES----GAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc----CCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 778899999999999999999999999987655555554332 2566788889999888888776664 33334555
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-cCcHHHHHHHHHHCCccceE
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-IGFEEDMKQIVNLLPKRRQT 577 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~-~gf~~~~~~il~~l~~~~qi 577 (838)
|+.-.+..+... ....+.+||.|.|++.+... -.+..+.+||+||+|.-.- ..|.-.+.+.+-..+++.++
T Consensus 251 VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 251 VGYQVRLESKRS------RETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeEEEeeecccC------CceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 555444333221 22589999999999988874 3468899999999996332 33555554444445688999
Q ss_pred EEEeeecccchHHHHHHHccCCCeEEEecCccccc-------ccc-------ceeeE------------EEECCchhHHH
Q psy12983 578 MLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEA-------TVA-------GLEQG------------YVVCPSEKRFL 631 (838)
Q Consensus 578 l~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~-------~~~-------~l~~~------------~~~~~~~~k~~ 631 (838)
++||||... +.+...+. ....+.+....-.. .+. ..... ......+....
T Consensus 323 ILMSAT~da--e~fs~YF~--~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 323 ILMSATLDA--ELFSDYFG--GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEeeeecch--HHHHHHhC--CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999983 33333332 22223222110000 000 00000 00001112222
Q ss_pred HHHHHH----HhcCCCeEEEEecchhhHHHHHHHhhcC-------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc
Q psy12983 632 LLFTFL----KKNRKKKVMVFFSSCMSVKFHHELLNYI-------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD 700 (838)
Q Consensus 632 ~l~~~l----~~~~~~kvIIF~~t~~~~~~l~~~L~~~-------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~ 700 (838)
.+..++ +....+.+|||.+...++..+++.|... .+-+..+|+.|+..+++.+...--.|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 233322 2345789999999999999999999642 24577899999999999999999999999999999
Q ss_pred CCccCCCCCCccEEEE--------eCCCC----------CHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 701 VAARGLDIPAVDWIVQ--------YDPPD----------DPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 701 ~~~~GiDip~v~~VI~--------~d~p~----------s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
+++.+|.|+++-+||. ||+-. +.+.-.||+|||||. ..|.||-+++....
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRSRY 546 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechhhh
Confidence 9999999999999996 44332 556779999999996 88999999987553
No 117
>KOG0343|consensus
Probab=99.82 E-value=7e-21 Score=205.59 Aligned_cols=165 Identities=27% Similarity=0.401 Sum_probs=151.2
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
|+||.+|+. |---++.=-+++.|||| ||.|++.++.|+..++++|| ||+|||.+.+..|+..+
T Consensus 175 iiGG~~~k~-E~eRi~~mNILVCTPGR------LLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l---- 243 (758)
T KOG0343|consen 175 IIGGKDVKF-ELERISQMNILVCTPGR------LLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL---- 243 (758)
T ss_pred eecCchhHH-HHHhhhcCCeEEechHH------HHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC----
Confidence 689999764 66678888999999999 99999999999999999999 99999999999999999
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 242 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~ 242 (838)
|+.|||||||||-+..|.+|++..++ ||.+|.+-++...++++++.|+|+.|+-.+|+.+|..+++.+
T Consensus 244 -----------P~~RQTLLFSATqt~svkdLaRLsL~-dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh 311 (758)
T KOG0343|consen 244 -----------PKKRQTLLFSATQTKSVKDLARLSLK-DPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSH 311 (758)
T ss_pred -----------ChhheeeeeecccchhHHHHHHhhcC-CCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhc
Confidence 99999999999999999999999999 999998876777889999999999999999999999999999
Q ss_pred CCCCeeeeHHhhhhc-----------CCceeEEeeCCCChhhhHH
Q psy12983 243 HIGEIVAWHVLLLQV-----------IKIKVQTRIGKEDFVTSVR 276 (838)
Q Consensus 243 ~~~~~iVF~~~~l~~-----------~~~~~~~~hg~~~~~~~~~ 276 (838)
...++|||+++|.++ -|++...|||.|+....+.
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 999999998777632 4899999999998876553
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.81 E-value=1.2e-17 Score=204.75 Aligned_cols=331 Identities=23% Similarity=0.285 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH----HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~----i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
+++...+.+...|| ++++.|.+.+.. +.+++++++.||||+|||++|++|++.... .+.+++|.+||+
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------~~~~vvi~t~t~ 302 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------TEKPVVISTNTK 302 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-------CCCeEEEEeCcH
Confidence 44566677777899 589999987764 456789999999999999999999987642 356899999999
Q ss_pred HHHHHHHH-HHHHHhhhcC--CeEEEEeCCcch-----------------H--------------------H--------
Q psy12983 479 ELSMQTFG-VLKELMKYHH--HTYGLIMGGASR-----------------Q--------------------A-------- 510 (838)
Q Consensus 479 ~La~Q~~~-~l~~~~~~~~--~~v~~l~gg~~~-----------------~--------------------~-------- 510 (838)
+|..|+.. .+..+.+..+ +++..+.|+.+. . +
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 4555544333 444444432210 0 0
Q ss_pred --HHH------------------------HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-----
Q psy12983 511 --EAQ------------------------KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG----- 559 (838)
Q Consensus 511 --~~~------------------------~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g----- 559 (838)
.+. .....++|||+...-|+..+.....+ +.+..++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHHHHHHHhc
Confidence 000 11124689999988887766444322 3556799999999865311
Q ss_pred --c-----HHH-------------------------------------------------------------HHH---HH
Q psy12983 560 --F-----EED-------------------------------------------------------------MKQ---IV 568 (838)
Q Consensus 560 --f-----~~~-------------------------------------------------------------~~~---il 568 (838)
+ ... ... ..
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 000 00
Q ss_pred HH-----------C-------------------------------------CccceEEEEeeecccc--hHHHH-HHHcc
Q psy12983 569 NL-----------L-------------------------------------PKRRQTMLFSATTTAK--TETLT-KLALK 597 (838)
Q Consensus 569 ~~-----------l-------------------------------------~~~~qil~lSAT~~~~--~~~l~-~~~l~ 597 (838)
.. + +....++++|||+... ...+. ..++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0123578999999742 22232 23332
Q ss_pred CCCeEEEecCccccccccceeeEEEE--CC-----c-hhHHHHHHHHHH---hcCCCeEEEEecchhhHHHHHHHhhcC-
Q psy12983 598 KEPVYIGVDDTKEEATVAGLEQGYVV--CP-----S-EKRFLLLFTFLK---KNRKKKVMVFFSSCMSVKFHHELLNYI- 665 (838)
Q Consensus 598 ~~~~~i~~~~~~~~~~~~~l~~~~~~--~~-----~-~~k~~~l~~~l~---~~~~~kvIIF~~t~~~~~~l~~~L~~~- 665 (838)
+.......+.. ..+..-..-++. .+ + +.-...+...+. ....++++||+++.+..+.++..|...
T Consensus 622 -~~~~~~~~~sp--f~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 622 -DVHFNTIEPTP--LNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred -ccccceecCCC--CCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 22222221000 000000011111 01 1 111122222222 235579999999999999999999752
Q ss_pred -CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc--EEEEeCCCC---------------------
Q psy12983 666 -DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD--WIVQYDPPD--------------------- 721 (838)
Q Consensus 666 -~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~--~VI~~d~p~--------------------- 721 (838)
..+...+..+.. ..|.+++++|++++..||++|+.+++|||+|+.. +||...+|.
T Consensus 699 ~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~ 777 (850)
T TIGR01407 699 EFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKN 777 (850)
T ss_pred cccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 112223333333 5789999999999999999999999999999866 466666552
Q ss_pred ---------CHHHHHHHhcccCcCCCCccEEEEE
Q psy12983 722 ---------DPKEYIHRVGRTARGEGSSGHALLI 746 (838)
Q Consensus 722 ---------s~~~y~Qr~GRagR~~g~~g~~i~l 746 (838)
....+.|.+||.-|.....|..+++
T Consensus 778 ~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 778 PFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred chHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 1234689999999963444543333
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1e-16 Score=183.60 Aligned_cols=320 Identities=18% Similarity=0.202 Sum_probs=221.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-..-.+.+|+ ++.+.||.|||+++.+|++.... .|.++.+++|+--||.|-++++..++.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-------~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL-------QGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH-------cCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 677 89999999998888775 78999999999999999987664 488899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcC-----cccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNT-----PEFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-----~~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
.++++++++.++.+..+..... .+||+++|...| .++|+.. .....+.+.+.||||+|.++-..
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 9999999998877665443333 579999998765 2232221 12233668899999999754100
Q ss_pred -------cHHHHHHHHHHCCc-----------------------------------------------------------
Q psy12983 560 -------FEEDMKQIVNLLPK----------------------------------------------------------- 573 (838)
Q Consensus 560 -------f~~~~~~il~~l~~----------------------------------------------------------- 573 (838)
....+..+...+.+
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 00111111111110
Q ss_pred -----------------------------------------------------------cceEEEEeeecccchHHHHHH
Q psy12983 574 -----------------------------------------------------------RRQTMLFSATTTAKTETLTKL 594 (838)
Q Consensus 574 -----------------------------------------------------------~~qil~lSAT~~~~~~~l~~~ 594 (838)
..++.+||.|......++...
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 013466666665555555554
Q ss_pred HccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 595 ALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 595 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
+.- + .+.++... ....... ...+......|..++..-+.. ..+.|+||.+.++...+.+++.|.+.+++..++
T Consensus 383 Y~l-~--Vv~IPtnk-p~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 383 YDL-G--VSVIPPNK-PNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred hCC-c--EEECCCCC-CceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 431 1 22222211 1111111 112333445566666665543 378899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhcCC-ceEEEEccCCccCCCCCC---------------ccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 673 HGKQKQMKRTTTFFQFCNAE-TGILLCTDVAARGLDIPA---------------VDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~-~~VLVaT~~~~~GiDip~---------------v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
++.-...+- .++.+ .|+ -.|-|||++++||.||.= ==+||-...+.|..--.|..||+||.
T Consensus 458 NAk~~~~EA-~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEEA-RIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhHH-HHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 987544332 22222 343 358999999999999852 23688888888999999999999996
Q ss_pred CCCccEEEEEeccCchHH
Q psy12983 737 EGSSGHALLILRPEELGF 754 (838)
Q Consensus 737 ~g~~g~~i~l~~~~e~~~ 754 (838)
|.+|.+-+|++-+|.-+
T Consensus 535 -GDpGss~f~lSleDdl~ 551 (764)
T PRK12326 535 -GDPGSSVFFVSLEDDVV 551 (764)
T ss_pred -CCCCceeEEEEcchhHH
Confidence 89999999998777443
No 120
>KOG0949|consensus
Probab=99.80 E-value=3e-18 Score=195.51 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=118.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy12983 415 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~ 494 (838)
+| .|-.||.+.+..+=.+...+|+|||.+|||.+-...+-+.+.. .+...+++++||++|+.|....+..+...
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 35 7889999999999899999999999999999876666666654 56788999999999999998888776633
Q ss_pred cCC-eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC--cccccCCceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 495 HHH-TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT--PEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 495 ~~~-~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~--~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
... ....+.|.-+.+-... .-.|.|+|+-|+.+...+... ......+++++|+||+|.+.+..-+-...+++...
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc
Confidence 221 2112222222211111 225899999999998887763 22335889999999999988765333334444443
Q ss_pred CccceEEEEeeecccch
Q psy12983 572 PKRRQTMLFSATTTAKT 588 (838)
Q Consensus 572 ~~~~qil~lSAT~~~~~ 588 (838)
.+.++++|||..+..
T Consensus 661 --~CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 661 --PCPFLVLSATIGNPN 675 (1330)
T ss_pred --CCCeeEEecccCCHH
Confidence 578999999988644
No 121
>KOG0923|consensus
Probab=99.79 E-value=4.9e-18 Score=187.13 Aligned_cols=307 Identities=19% Similarity=0.239 Sum_probs=214.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh-hhcC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM-KYHH 496 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~-~~~~ 496 (838)
..+++-.+.+.++.+++-++|.|.||||||.. +|- .|....+. ..++.+-+--|.|--|..++.+..+-+ ...|
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 45788888999999999999999999999975 553 34443333 356668889999999998887666543 3344
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcc-cccC-cHHHHHHHHHHCCcc
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRI-LDIG-FEEDMKQIVNLLPKR 574 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l-~~~g-f~~~~~~il~~l~~~ 574 (838)
..|+......+... +..-|=++|.|+|++-+... ..+.++++|||||||.- +... ....++.| ..++++
T Consensus 340 ~eVGYsIRFEdcTS------ekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~Rpd 410 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS------EKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPD 410 (902)
T ss_pred cccceEEEeccccC------cceeeeeecchhHHHHHhcc--ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCc
Confidence 45544443322211 22357799999998877765 45689999999999952 1111 11223333 345678
Q ss_pred ceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHH----hcCCCeEEEEec
Q psy12983 575 RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK----KNRKKKVMVFFS 650 (838)
Q Consensus 575 ~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~----~~~~~kvIIF~~ 650 (838)
.+++.+|||+.. +.+.. ++..-|++. ++.. +. .+..+|...+..+=+++.+.-+. ..+.+-+|||..
T Consensus 411 LKllIsSAT~DA--ekFS~-fFDdapIF~-iPGR-Ry----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 411 LKLLISSATMDA--EKFSA-FFDDAPIFR-IPGR-RY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred ceEEeeccccCH--HHHHH-hccCCcEEe-ccCc-cc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 999999999975 34444 333344333 2221 11 12233444555443443333222 346789999999
Q ss_pred chhhHHHHHHHhhcC---------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC--
Q psy12983 651 SCMSVKFHHELLNYI---------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP-- 719 (838)
Q Consensus 651 t~~~~~~l~~~L~~~---------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~-- 719 (838)
..+.++...+.|.++ .+-++.+|+.++.+.+..|++---.|-.+|++||+++++.+.|+++.+||.-++
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 999888777776553 345788999999999999999888999999999999999999999999996432
Q ss_pred ----------------CCCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 720 ----------------PDDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 720 ----------------p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
|-|.++-.||+|||||. .+|.|+-+|+.
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRt--gPGKCfRLYt~ 605 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRT--GPGKCFRLYTA 605 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCC--CCCceEEeech
Confidence 23678889999999996 58999999984
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=9.2e-17 Score=190.51 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 628 KRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 628 ~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
.+...+...+.. ..+.+++|||++++.++.+++.|.+.|+++..+||++++.+|..+++.|++|++.|+|||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 345555555554 357799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCC-----CCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 706 LDIPAVDWIVQYDP-----PDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 706 iDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
+|+|++++||++|. |.+..+|+||+||+||. ..|.+++|+...+.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~~~~ 559 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADKITD 559 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecCCCH
Confidence 99999999999885 78999999999999994 68999999986433
No 123
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.6e-19 Score=205.67 Aligned_cols=167 Identities=22% Similarity=0.227 Sum_probs=146.2
Q ss_pred HHHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccc
Q psy12983 88 RIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTEC 161 (838)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~ 161 (838)
-++||.....|-.-+...|+++++|||| ++||+++. .+.++.++++| ||+|||.++++.|+..+
T Consensus 133 ~i~GG~~~~~q~~~l~~~~~ivVaTPGR------llD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~--- 202 (513)
T COG0513 133 VVYGGVSIRKQIEALKRGVDIVVATPGR------LLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL--- 202 (513)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECccH------HHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC---
Confidence 3567877777776666679999999999 99999887 78899999999 99999999999999999
Q ss_pred cccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcch-HHHHHHHHHh
Q psy12983 162 PNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK-RFLLLFTFLK 240 (838)
Q Consensus 162 ~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~-K~~~L~~ll~ 240 (838)
|.++|++|||||||+.|.++++.+|+ +|..|.+.......+.++|+|+|+.|+..+ |+.+|..+++
T Consensus 203 ------------p~~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~ 269 (513)
T COG0513 203 ------------PPDRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLK 269 (513)
T ss_pred ------------CcccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 88999999999999999999999999 999877754444447889999999999876 9999999999
Q ss_pred hCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHH
Q psy12983 241 KNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRN 277 (838)
Q Consensus 241 ~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~ 277 (838)
.....++|||+++ .|...|++|..+||+++.-+..+.
T Consensus 270 ~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~ 315 (513)
T COG0513 270 DEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRA 315 (513)
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHH
Confidence 9888899999654 457789999999999988766553
No 124
>KOG4150|consensus
Probab=99.77 E-value=7.9e-18 Score=181.90 Aligned_cols=336 Identities=13% Similarity=0.084 Sum_probs=241.5
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 409 KAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 409 ~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+.+..+.-+....+|.+++..+-+|+++++.-.|.+||.+++.+.+...+.. ......+++.|++++++...+.+
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-----CHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-----CcccceecchhHHHHhhccCCce
Confidence 4445577778899999999999999999999999999999999999887655 45667899999999998765432
Q ss_pred HHHh---hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc-cc--ccCCceEEEEeCCCcccccCcHH
Q psy12983 489 KELM---KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP-EF--LYKNLQCLIIDEADRILDIGFEE 562 (838)
Q Consensus 489 ~~~~---~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-~~--~~~~l~lvViDEah~l~~~gf~~ 562 (838)
.-.. +.....+...+.+.+..+.....+.+.+++++.|.+......... .+ .+-...+++.||+|.+... |+.
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 2111 111223445566667767777778889999999998865543321 11 1223568999999987654 333
Q ss_pred H----HHHHHHHC-----CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-------
Q psy12983 563 D----MKQIVNLL-----PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS------- 626 (838)
Q Consensus 563 ~----~~~il~~l-----~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------- 626 (838)
. ++.+.... ..+.|++-.|||...+++.+.....-.+...+..+. .+..-+..+++.+.
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG-----SPs~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG-----SPSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-----CCCccceEEEeCCCCCCcchh
Confidence 2 33332222 236799999999999988888776655555554442 22333444554432
Q ss_pred --hhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcC----C----CCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 627 --EKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYI----D----LPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 627 --~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~----~----~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
+.+......++.+ ..+-++|.||+.++-|+.+....++. + -.+..|.|+...++|+++..+.-.|+..
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 1222222233322 24668999999999999877666543 1 1356788999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEE--eccCchHHHH
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLI--LRPEELGFLR 756 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l--~~~~e~~~~~ 756 (838)
-+++|++++-||||...+.|++.++|.|++.+.|..|||||. .+...++.+ ..|-|..++.
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRR-Nk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRR-NKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhcccccc-CCCceEEEEEeccchhhHhhc
Confidence 999999999999999999999999999999999999999997 566666554 3455655554
No 125
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.77 E-value=2.1e-17 Score=166.94 Aligned_cols=186 Identities=41% Similarity=0.630 Sum_probs=149.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 413 DMGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
.+++.+++++|.++++.+... +.+++.++||+|||.++..+++..+.. ....+++|++|++.++.|+.+.+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-----~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-----GKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-----cCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 356779999999999999998 999999999999999999999888754 22568999999999999999999887
Q ss_pred hhhcCCeEEEEeCCcchHHHHHHHhcCC-cEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH
Q psy12983 492 MKYHHHTYGLIMGGASRQAEAQKLAKGI-NIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL 570 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~-~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~ 570 (838)
+...........++.........+..+. +++++|++.+.+.+.... .....++++|+||+|++....+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 7654423344445555445555555555 999999999998887754 34577899999999999876688888888888
Q ss_pred CCccceEEEEeeecccchHHHHHHHccCCCeEEEe
Q psy12983 571 LPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605 (838)
Q Consensus 571 l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~ 605 (838)
+++..+++++|||++.........+.. ....+..
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~-~~~~~~~ 190 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLN-DPVFIDV 190 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcC-CCEEEeC
Confidence 888899999999999888888877775 4444443
No 126
>KOG1123|consensus
Probab=99.76 E-value=3.7e-18 Score=182.45 Aligned_cols=323 Identities=15% Similarity=0.195 Sum_probs=215.1
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEG---RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~---~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..++|+|..++..+..+ ++.+|+.|+|+|||++-+-++. .-.+++||+|.+-.-+.||...|+.|..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~----------tikK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC----------TIKKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee----------eecccEEEEecCccCHHHHHHHHHhhcc
Confidence 46899999999988753 6889999999999998766654 2367899999999999999999998866
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc-------ccccCCceEEEEeCCCcccccCcHHHHHH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP-------EFLYKNLQCLIIDEADRILDIGFEEDMKQ 566 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-------~~~~~~l~lvViDEah~l~~~gf~~~~~~ 566 (838)
...-.++..+.+.. .+...++.|+|+|..++...-+++. .+.-+.++++++||+|.+....|+..+.-
T Consensus 371 i~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSI 445 (776)
T ss_pred cCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHH
Confidence 55555554444332 2345678999999877643222211 11235689999999999888778777665
Q ss_pred HHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEE--------------ec-------Ccc----ccccccceeeEE
Q psy12983 567 IVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIG--------------VD-------DTK----EEATVAGLEQGY 621 (838)
Q Consensus 567 il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~--------------~~-------~~~----~~~~~~~l~~~~ 621 (838)
+.... -+++|||+-...+.+..+.+...|.... +. -.. +......-+...
T Consensus 446 v~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~l 520 (776)
T KOG1123|consen 446 VQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRML 520 (776)
T ss_pred HHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhe
Confidence 55443 4889999876554444333222221110 00 000 000000011111
Q ss_pred EECCchhHHHHHHHHH--HhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhc-CCceEEEE
Q psy12983 622 VVCPSEKRFLLLFTFL--KKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCN-AETGILLC 698 (838)
Q Consensus 622 ~~~~~~~k~~~l~~~l--~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~-g~~~VLVa 698 (838)
...-+..|+....-++ .+.++.++|||..++-....++-.|.+ -++.|..++.+|.+|++.|+- .+++.++-
T Consensus 521 LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 521 LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 2222233333322222 234788999999998888888777754 478999999999999999985 56788999
Q ss_pred ccCCccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCC--CCc---cEEEEEeccCchHHH------HHHHHcCCC
Q psy12983 699 TDVAARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGE--GSS---GHALLILRPEELGFL------RYLKQAKIP 764 (838)
Q Consensus 699 T~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~--g~~---g~~i~l~~~~e~~~~------~~l~~~~~~ 764 (838)
+.+..+.+|+|.++++|+..... |..+=.||.||.-|+- ... ++.|.+++.+..++. ++|...|..
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLidQGYs 673 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYS 673 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhhhcCce
Confidence 99999999999999999987764 7788899999999852 112 334455555544433 455555543
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.5e-16 Score=181.82 Aligned_cols=318 Identities=16% Similarity=0.214 Sum_probs=211.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-.--.+.+ .-|+.+.||.|||+++.+|++-... .|.++.+++|+.-||.|.++++..++.
T Consensus 79 lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al-------~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL-------SGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred hCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 575 888888876555544 4589999999999999999986653 488899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
.++++++++.++.+..+..... .++|++||..-| .++|+..- ....+.+.++||||+|.++=..
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 9999999998877665544333 379999998776 33333321 1123788999999999854100
Q ss_pred --------cHHHHHHHHHHCCc-------------------c--------------------------------------
Q psy12983 560 --------FEEDMKQIVNLLPK-------------------R-------------------------------------- 574 (838)
Q Consensus 560 --------f~~~~~~il~~l~~-------------------~-------------------------------------- 574 (838)
....+..+...+.+ +
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 11111112111100 0
Q ss_pred ------------------------------------------------------------------------------ce
Q psy12983 575 ------------------------------------------------------------------------------RQ 576 (838)
Q Consensus 575 ------------------------------------------------------------------------------~q 576 (838)
.+
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 02
Q ss_pred EEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhh
Q psy12983 577 TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMS 654 (838)
Q Consensus 577 il~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~ 654 (838)
+.+||.|......++...+.. . .+.++.. .... ..-....++.....|..++..-+.. ..+.|+||-+.|++.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l-~--Vv~IPTn-kP~~-R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGL-D--VVVIPPN-KPLA-RKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCC-C--EEECCCC-CCcc-cccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 233333333222222222211 1 1111110 0000 0001112334445666666666654 368899999999999
Q ss_pred HHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC-CceEEEEccCCccCCCCC------------------------
Q psy12983 655 VKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA-ETGILLCTDVAARGLDIP------------------------ 709 (838)
Q Consensus 655 ~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~VLVaT~~~~~GiDip------------------------ 709 (838)
.+.+++.|.+.+++..++++.....+-+-+- ..| .-.|-|||++++||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999888888875433333332 234 346899999999999993
Q ss_pred -------------CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 710 -------------AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 710 -------------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
+==+||--..+.|..-=.|..||+||. |.+|.+-+|++-+|.
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQ-GDPGsS~f~lSlED~ 593 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQ-GDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccC-CCCCceEEEEEcCcH
Confidence 122677777888888889999999996 899999999987663
No 128
>KOG0926|consensus
Probab=99.76 E-value=1.3e-17 Score=186.68 Aligned_cols=309 Identities=21% Similarity=0.238 Sum_probs=202.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCC---CCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCe
Q psy12983 422 IQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPR---NGTGIIIISPTRELSMQTFGVLKELMKYHHHT 498 (838)
Q Consensus 422 ~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~---~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~ 498 (838)
-.++.+.+|.++.-+||||.||||||.. +|- .|+...+... ++.-+-|.-|.|.-|.-++.+...-+..++..
T Consensus 260 eEq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQ--FLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e 335 (1172)
T KOG0926|consen 260 EEQRIMEAINENPVVIICGETGSGKTTQ--VPQ--FLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE 335 (1172)
T ss_pred HHHHHHHHhhcCCeEEEecCCCCCcccc--chH--HHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccc
Confidence 3455666677778899999999999975 443 3343333221 24456777899988888877666555556666
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-----cHHHHHHHHHHCCc
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-----FEEDMKQIVNLLPK 573 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-----f~~~~~~il~~l~~ 573 (838)
|+........ +.....|-++|.|.|++-+.+. +.++.++.||+||||.-+-.. ....+-.+...+.+
T Consensus 336 VsYqIRfd~t------i~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 336 VSYQIRFDGT------IGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred eeEEEEeccc------cCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 6554433221 1233589999999999888775 778999999999999633211 11111112111222
Q ss_pred ------cceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEE-CCc---hhHHHHHHHHHHhcCCC
Q psy12983 574 ------RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVV-CPS---EKRFLLLFTFLKKNRKK 643 (838)
Q Consensus 574 ------~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~---~~k~~~l~~~l~~~~~~ 643 (838)
..+.|.||||+.-..-.-....+...|..+.++...-..+. ++.. .+. .+.....+.+-+..+.+
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsI-----HF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSI-----HFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEE-----EeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 45799999998753222122333344556666654322221 1111 111 12334455555667889
Q ss_pred eEEEEecchhhHHHHHHHhhcC----------------------------------------------------------
Q psy12983 644 KVMVFFSSCMSVKFHHELLNYI---------------------------------------------------------- 665 (838)
Q Consensus 644 kvIIF~~t~~~~~~l~~~L~~~---------------------------------------------------------- 665 (838)
.+|||+....++..+++.|++.
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999998751
Q ss_pred -----------------------------------------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCcc
Q psy12983 666 -----------------------------------------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAAR 704 (838)
Q Consensus 666 -----------------------------------------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 704 (838)
..-|..+++-++...+.++++.--.|..-++|||+++++
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 001444555566677777777777888889999999999
Q ss_pred CCCCCCccEEEEeCCC--------C----------CHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 705 GLDIPAVDWIVQYDPP--------D----------DPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 705 GiDip~v~~VI~~d~p--------~----------s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
.+.||++.+||..+.- . |-.+--||+|||||. ..|.||-+|+.
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt--gpGHcYRLYSS 703 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT--GPGHCYRLYSS 703 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC--CCCceeehhhh
Confidence 9999999999964432 2 445568999999996 58999999875
No 129
>KOG0924|consensus
Probab=99.74 E-value=1.1e-16 Score=176.73 Aligned_cols=306 Identities=17% Similarity=0.209 Sum_probs=203.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh-hcC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK-YHH 496 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~-~~~ 496 (838)
.....+.+.+..+.+++-++|.+.||||||... | +.|+...+. +..-+-+.-|.|.-|..++....+-+. ..|
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl--~--QyL~edGY~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQL--A--QYLYEDGYA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhh--H--HHHHhcccc--cCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 446778888888888999999999999999753 2 333333332 234566777999999998887776543 234
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc-Cc-HHHHHHHHHHCCcc
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GF-EEDMKQIVNLLPKR 574 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf-~~~~~~il~~l~~~ 574 (838)
-.++......+... ....|-+.|.|.|++-.... ..+.++++||+||||.-.-. .. --.++..++ -+.+
T Consensus 430 ~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrd 500 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRD 500 (1042)
T ss_pred cccceEEEeeecCC------CceeEEEeccchHHHHHhhh--hhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhcc
Confidence 44444433322211 22468899999987655443 34678999999999963322 21 112222332 2457
Q ss_pred ceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH-HHHHH---HhcCCCeEEEEec
Q psy12983 575 RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL-LFTFL---KKNRKKKVMVFFS 650 (838)
Q Consensus 575 ~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~-l~~~l---~~~~~~kvIIF~~ 650 (838)
.++|.+|||+.. +.+...+. +-|. +.++... .+ +...|...+-++=... +-..+ .....+.++||..
T Consensus 501 lKliVtSATm~a--~kf~nfFg-n~p~-f~IpGRT---yP--V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 501 LKLIVTSATMDA--QKFSNFFG-NCPQ-FTIPGRT---YP--VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred ceEEEeeccccH--HHHHHHhC-CCce-eeecCCc---cc--eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 899999999975 45555444 2232 2222110 01 1112222222221111 11111 2235678999999
Q ss_pred chhhHHHHHHHhhc----C------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeC--
Q psy12983 651 SCMSVKFHHELLNY----I------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYD-- 718 (838)
Q Consensus 651 t~~~~~~l~~~L~~----~------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d-- 718 (838)
..+.++-.+..+++ + ++.|..+++.|++..+.++++.-..|..+++|||+++++.+.+|++.+||..+
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 98887766665543 2 56789999999999999999888889999999999999999999999999644
Q ss_pred ----------------CCCCHHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 719 ----------------PPDDPKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 719 ----------------~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
.|-|-.+--||.|||||. .+|.||-+|..
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt--~pG~cYRlYTe 696 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRT--GPGTCYRLYTE 696 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCC--CCcceeeehhh
Confidence 234677789999999995 68999999876
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=3.5e-15 Score=180.67 Aligned_cols=326 Identities=20% Similarity=0.221 Sum_probs=196.9
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH-HHHH
Q psy12983 414 MGFTKMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT-FGVL 488 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~-~~~l 488 (838)
.|| +.|+-|.+....+. +++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 467 78999999665544 468899999999999999999988642 357899999999999999 4667
Q ss_pred HHHhhhcCCeEEEEeCCcchH-----------------------------------------------HHHHHH------
Q psy12983 489 KELMKYHHHTYGLIMGGASRQ-----------------------------------------------AEAQKL------ 515 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~gg~~~~-----------------------------------------------~~~~~l------ 515 (838)
..+....++.+..+.|+.+.- ..|..+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 777666666666555432100 001110
Q ss_pred ------------------hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-----c-------HHH--
Q psy12983 516 ------------------AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-----F-------EED-- 563 (838)
Q Consensus 516 ------------------~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-----f-------~~~-- 563 (838)
...+||+|+....|...+.... .+...+.+||||||++.+.. . ...
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 1136899999888877664443 24678999999999865321 0 000
Q ss_pred -----------------------------------------HHH-------H--------HHHC----------------
Q psy12983 564 -----------------------------------------MKQ-------I--------VNLL---------------- 571 (838)
Q Consensus 564 -----------------------------------------~~~-------i--------l~~l---------------- 571 (838)
+.. + ...+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 000 0 0000
Q ss_pred --------------------CccceEEEEeeecc--cchHHHHHHHccCCCeEEEecCccccccccceeeEEEEC---Cc
Q psy12983 572 --------------------PKRRQTMLFSATTT--AKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC---PS 626 (838)
Q Consensus 572 --------------------~~~~qil~lSAT~~--~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~---~~ 626 (838)
+....++++|||++ +...-....++. ......+... +.. .+.++.. +.
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~-~~~~~~~~~~-----~~~-~~~~~i~~~~p~ 623 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFE-EYLFHKIEKD-----KKQ-DQLVVVDQDMPL 623 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCC-ccceecCCCC-----hHH-ccEEEeCCCCCC
Confidence 00135788899986 222212223332 2212111110 000 0111111 11
Q ss_pred ------hhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEE
Q psy12983 627 ------EKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLC 698 (838)
Q Consensus 627 ------~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVa 698 (838)
+.-...+...+.. ..+++++|++++.+..+.+++.|......+ ...|... .|.+++++|++++..||++
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 1111222222211 356799999999999999999997655444 4445322 2567899999998899999
Q ss_pred ccCCccCCCCCC--ccEEEEeCCCC------------------------------CHHHHHHHhcccCcCCCCccEEEEE
Q psy12983 699 TDVAARGLDIPA--VDWIVQYDPPD------------------------------DPKEYIHRVGRTARGEGSSGHALLI 746 (838)
Q Consensus 699 T~~~~~GiDip~--v~~VI~~d~p~------------------------------s~~~y~Qr~GRagR~~g~~g~~i~l 746 (838)
|..+.+|+|+|. ...||...+|- -...+.|.+||.-|.....|..+++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999973 45566666551 1234789999999964455654443
Q ss_pred ecc-CchHHHHHHHH
Q psy12983 747 LRP-EELGFLRYLKQ 760 (838)
Q Consensus 747 ~~~-~e~~~~~~l~~ 760 (838)
-.. ....+-+.+.+
T Consensus 781 D~R~~~k~Yg~~~l~ 795 (820)
T PRK07246 781 DRRILTKSYGKQILA 795 (820)
T ss_pred CCcccccHHHHHHHH
Confidence 322 23334444433
No 131
>KOG0345|consensus
Probab=99.70 E-value=7.5e-18 Score=179.80 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=143.3
Q ss_pred HHhcccccCC-CcccccCCCeeeeCCCcccchhhhhhhccC-CCCccccccchhe------eeccccccccccceEeecc
Q psy12983 89 IVAELTVYPP-ESFTLSNPSKLTHNDGQSHLEEHKLTHNDA-TPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTE 160 (838)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d 160 (838)
+|||-+|... .+|...+|.++++|||| |.|.++. +..+++.++++|| +|+|||+..+..|+..+
T Consensus 114 ~vGG~~v~~Di~~fkee~~nIlVgTPGR------L~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L-- 185 (567)
T KOG0345|consen 114 LVGGRSVEEDIKTFKEEGPNILVGTPGR------LLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL-- 185 (567)
T ss_pred EecCccHHHHHHHHHHhCCcEEEeCchh------HHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhc--
Confidence 6788666543 46788999999999999 9999877 6667788999999 99999999999999999
Q ss_pred ccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHh
Q psy12983 161 CPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK 240 (838)
Q Consensus 161 ~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~ 240 (838)
|++|.|-|||||++++|.+|++..++ ||+.|.+..++..++++.+.-+|+.|+.+.|+..|.++|.
T Consensus 186 -------------PKQRRTGLFSATq~~~v~dL~raGLR-Npv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~ 251 (567)
T KOG0345|consen 186 -------------PKQRRTGLFSATQTQEVEDLARAGLR-NPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLN 251 (567)
T ss_pred -------------ccccccccccchhhHHHHHHHHhhcc-CceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999888776666688899999999999999999999999
Q ss_pred hCCCCCeeeeHHhhhh-----------cCCceeEEeeCCCChhh
Q psy12983 241 KNHIGEIVAWHVLLLQ-----------VIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 241 ~~~~~~~iVF~~~~l~-----------~~~~~~~~~hg~~~~~~ 273 (838)
....+++|||+.+|.. ....+...+||+|+...
T Consensus 252 ~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 252 NNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred ccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 9999999999766542 13678999999997654
No 132
>KOG0385|consensus
Probab=99.69 E-value=3e-15 Score=168.03 Aligned_cols=320 Identities=17% Similarity=0.226 Sum_probs=208.1
Q ss_pred CCcHHHHHHHHHHHc----CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLE----GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.++++|.+.++.+.. |-+.|+.-.+|-|||+.. ++.+..+...+ ......||++|...|. .|.++|+++..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~---~~~GPfLVi~P~StL~-NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK---GIPGPFLVIAPKSTLD-NWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc---CCCCCeEEEeeHhhHH-HHHHHHHHhCC
Confidence 799999999988763 678999999999999864 33344433211 2344579999987664 46677777754
Q ss_pred hcCCeEEEEeCCcchHHHHHH-H--hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQK-L--AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL 570 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~-l--~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~ 570 (838)
.+.+..++|+......... + ....+|+|+|.+..+.--. .+.--.++++||||||++.+.. ..+..+++.
T Consensus 242 --~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 242 --SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred --CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 5677778887644332211 1 2358999999999864311 1222347899999999998864 344455555
Q ss_pred CCccceEEEEeeecccc-hHHHHHHHccCCCeEEEe-------------------------------------------c
Q psy12983 571 LPKRRQTMLFSATTTAK-TETLTKLALKKEPVYIGV-------------------------------------------D 606 (838)
Q Consensus 571 l~~~~qil~lSAT~~~~-~~~l~~~~l~~~~~~i~~-------------------------------------------~ 606 (838)
+... .-+++|.||-.+ ..++..+....-|.++.. +
T Consensus 315 f~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 5433 357778887532 222211110000000000 0
Q ss_pred Cccccccc---------------------------------cc--------eeeEEEEC---------------CchhHH
Q psy12983 607 DTKEEATV---------------------------------AG--------LEQGYVVC---------------PSEKRF 630 (838)
Q Consensus 607 ~~~~~~~~---------------------------------~~--------l~~~~~~~---------------~~~~k~ 630 (838)
+..+...+ .+ ..+-|... ...-|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00000000 00 00000000 011123
Q ss_pred HHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC---ceEEEEccCCccC
Q psy12983 631 LLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE---TGILLCTDVAARG 705 (838)
Q Consensus 631 ~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~---~~VLVaT~~~~~G 705 (838)
..|-.++.. ..+.+||||..-....+-+..++.-.++..+.+.|.++.++|...++.|.... .-.|++|.+.+.|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 333333332 25679999999999998888888888999999999999999999999998643 4568899999999
Q ss_pred CCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE--EEEEeccCc
Q psy12983 706 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH--ALLILRPEE 751 (838)
Q Consensus 706 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~~~e 751 (838)
||+..+++||.||..+++..-.|...||.|- |+... ++-|++...
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRI-GQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRI-GQKKPVVVYRLITENT 600 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhh-CCcCceEEEEEeccch
Confidence 9999999999999999999999999999997 54443 455566544
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.8e-14 Score=164.75 Aligned_cols=318 Identities=19% Similarity=0.247 Sum_probs=214.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|. .++++|.-.--.+..| -|..+.||-|||+++.+|++-..+ .|+.|-|++..--||.-=++++..++.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-------~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-------TGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-------cCCceEEEecchhhhhhhHHHHHHHHH
Confidence 677 8899998877666555 489999999999999999865432 477888999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
.+|+++++...+.+..+... .-.+||+++|...| .++|+..- ....+.+.+.||||+|.++=..
T Consensus 145 fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 99999998887666554333 33589999998765 34444321 1223678899999999754100
Q ss_pred --------cHHHHHHHHHHCCc----------------------------------------------------------
Q psy12983 560 --------FEEDMKQIVNLLPK---------------------------------------------------------- 573 (838)
Q Consensus 560 --------f~~~~~~il~~l~~---------------------------------------------------------- 573 (838)
+......+...+..
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 11111111111110
Q ss_pred ----------------------------------------------------------cceEEEEeeecccchHHHHHHH
Q psy12983 574 ----------------------------------------------------------RRQTMLFSATTTAKTETLTKLA 595 (838)
Q Consensus 574 ----------------------------------------------------------~~qil~lSAT~~~~~~~l~~~~ 595 (838)
..++.+||.|......++...+
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 0134455555444333443332
Q ss_pred ccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEec
Q psy12983 596 LKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIH 673 (838)
Q Consensus 596 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lh 673 (838)
. ...+.++... .. ...-....++.....|..++..-+.. ..+.|+||.|.+++..+.+++.|.+.|+...+++
T Consensus 383 ~---l~Vv~IPTnk-P~-~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 383 N---MRVNVVPTNK-PV-IRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred C---CCEEECCCCC-Ce-eeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 2 1112222111 00 00000112334455666666665553 3678999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcC-CceEEEEccCCccCCCCCCcc--------EEEEeCCCCCHHHHHHHhcccCcCCCCccEEE
Q psy12983 674 GKQKQMKRTTTFFQFCNA-ETGILLCTDVAARGLDIPAVD--------WIVQYDPPDDPKEYIHRVGRTARGEGSSGHAL 744 (838)
Q Consensus 674 g~m~~~~R~~i~~~F~~g-~~~VLVaT~~~~~GiDip~v~--------~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i 744 (838)
+.-.. ++.-+-. ..| .-.|.|||++++||.||.--. +||....+.|..--.|..||+||. |.+|.+-
T Consensus 458 Ak~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQ-GDpGss~ 533 (925)
T PRK12903 458 AKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQ-GDVGESR 533 (925)
T ss_pred ccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccC-CCCCcce
Confidence 87443 3333322 345 346899999999999995322 788888888888889999999997 8999999
Q ss_pred EEeccCch
Q psy12983 745 LILRPEEL 752 (838)
Q Consensus 745 ~l~~~~e~ 752 (838)
+|++-+|.
T Consensus 534 f~lSLeD~ 541 (925)
T PRK12903 534 FFISLDDQ 541 (925)
T ss_pred EEEecchH
Confidence 99887663
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.69 E-value=4.2e-14 Score=165.45 Aligned_cols=276 Identities=19% Similarity=0.236 Sum_probs=178.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-+.-.+ .+..|+.+.||.|||+++.+|++-... .|..|-|++++..||.+-++++..++.
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-------~G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-------cCCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 677 7889998766444 355799999999999999999964322 478899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcC----c-ccccCCceEEEEeCCCcccccC--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNT----P-EFLYKNLQCLIIDEADRILDIG-------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~----~-~~~~~~l~lvViDEah~l~~~g-------- 559 (838)
.+|+++++..++.+..+... .-.+||+++|...| .++|+.. . ....+.+.+.||||+|.++=..
T Consensus 143 ~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiIS 220 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIIS 220 (870)
T ss_pred HcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceecc
Confidence 99999999887776654333 34579999998654 2333222 1 1224668899999999744100
Q ss_pred --------cHHHHHHHHHHCCc----------------------------------------------------------
Q psy12983 560 --------FEEDMKQIVNLLPK---------------------------------------------------------- 573 (838)
Q Consensus 560 --------f~~~~~~il~~l~~---------------------------------------------------------- 573 (838)
.......+.+.+..
T Consensus 221 g~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~d 300 (870)
T CHL00122 221 GQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVH 300 (870)
T ss_pred CCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCc
Confidence 00000111111100
Q ss_pred ----------------------------------------------------------cceEEEEeeecccchHHHHHHH
Q psy12983 574 ----------------------------------------------------------RRQTMLFSATTTAKTETLTKLA 595 (838)
Q Consensus 574 ----------------------------------------------------------~~qil~lSAT~~~~~~~l~~~~ 595 (838)
..++.+||.|......++...+
T Consensus 301 YiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY 380 (870)
T CHL00122 301 YIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY 380 (870)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh
Confidence 1135666666655444444443
Q ss_pred ccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEec
Q psy12983 596 LKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIH 673 (838)
Q Consensus 596 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lh 673 (838)
. ...+.++.... ...... ...+......|...+..-+.. ..+.|+||-+.+++..+.+++.|.+.+++..+++
T Consensus 381 ~---l~vv~IPtnkp-~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 381 N---LEVVCIPTHRP-MLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred C---CCEEECCCCCC-ccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 2 11222222111 111111 113344445566655554433 3788999999999999999999999999999999
Q ss_pred CCCChhHHH-HHHHHHhcC-CceEEEEccCCccCCCC
Q psy12983 674 GKQKQMKRT-TTFFQFCNA-ETGILLCTDVAARGLDI 708 (838)
Q Consensus 674 g~m~~~~R~-~i~~~F~~g-~~~VLVaT~~~~~GiDi 708 (838)
+.-...+++ .++.+ .| .-.|-|||++++||.||
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 974322233 23322 34 34689999999999998
No 135
>KOG0340|consensus
Probab=99.67 E-value=5.3e-17 Score=167.80 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=142.1
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCC---ccccccchhe------eeccccccccccceEeec
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPL---LVSVSIFCPF------VLNQGLGKYFKEVSVSFT 159 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~lv------~l~~g~~~~~~~i~~~~~ 159 (838)
||||-+.-.|--.|-.+|..+++|||| +-||+++.++ +.++++++|| ||+.+|.++++.+...+
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGR------lad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l- 181 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGR------LADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL- 181 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccc------cccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC-
Confidence 799999999999999999999999999 9999988844 6799999999 89999999999998888
Q ss_pred cccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCC--CEEEEEecCCcccccccceEEEEECCcchHHHHHHH
Q psy12983 160 ECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKE--PVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFT 237 (838)
Q Consensus 160 d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~--p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ 237 (838)
|+.|||+|||||+++.++++.....+ + +.. ....+..++.+.+.|.|+.|+.+.|..+|++
T Consensus 182 --------------P~~RQtLlfSATitd~i~ql~~~~i~-k~~a~~--~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 182 --------------PKPRQTLLFSATITDTIKQLFGCPIT-KSIAFE--LEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred --------------CCccceEEEEeehhhHHHHhhcCCcc-cccceE--EeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 88899999999999999998776555 4 333 3334566888999999999999999999999
Q ss_pred HHhhC---CCCCeeeeHHhhh---------hcCCceeEEeeCCCChhhhHHH
Q psy12983 238 FLKKN---HIGEIVAWHVLLL---------QVIKIKVQTRIGKEDFVTSVRN 277 (838)
Q Consensus 238 ll~~~---~~~~~iVF~~~~l---------~~~~~~~~~~hg~~~~~~~~~~ 277 (838)
+|+.. ..+.+|||++++. ..+++.+..+||.|...+.+..
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 99854 3568999977654 6678999999999988877753
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=9.4e-16 Score=144.71 Aligned_cols=119 Identities=34% Similarity=0.605 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCcc
Q psy12983 627 EKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAAR 704 (838)
Q Consensus 627 ~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 704 (838)
+.|...+..++... .++++||||++.+.++.+++.|.+.+.++..+||+++..+|..+++.|.++...+|++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36777777777765 4789999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEE
Q psy12983 705 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLI 746 (838)
Q Consensus 705 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l 746 (838)
|+|+|++++||+++.|++...+.|++||++|. |+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRA-GQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccC-CCCceEEeC
Confidence 99999999999999999999999999999997 778877653
No 137
>KOG0331|consensus
Probab=99.65 E-value=9.2e-17 Score=178.80 Aligned_cols=182 Identities=15% Similarity=0.138 Sum_probs=147.4
Q ss_pred CCccCchhhHHHHHHHH-----------HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRI-----------VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||=..-+.-..-.+.+ .||..--+|..=+..-=+++++|||| ++||++... ..+..+.|+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGR------l~d~le~g~-~~l~~v~ylV 244 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGR------LIDLLEEGS-LNLSRVTYLV 244 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChH------HHHHHHcCC-ccccceeEEE
Confidence 46655555555555544 46666678888888888999999999 999997754 4788999999
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccc
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT 215 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~ 215 (838)
||+|||+++++.|+..+ .+..+||+|||||+|.+|+.||..||. +|..+.+....+...
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i--------------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a 309 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQI--------------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKA 309 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhc--------------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhh
Confidence 99999999999999998 134579999999999999999999999 999988865445567
Q ss_pred cccceEEEEECCcchHHHHHHHHHhhC---CCCCeeeeHHhhh---------hcCCceeEEeeCCCChhhhHH
Q psy12983 216 VAGLEQGYVVCPSEKRFLLLFTFLKKN---HIGEIVAWHVLLL---------QVIKIKVQTRIGKEDFVTSVR 276 (838)
Q Consensus 216 ~~~i~q~~v~v~~~~K~~~L~~ll~~~---~~~~~iVF~~~~l---------~~~~~~~~~~hg~~~~~~~~~ 276 (838)
..+|+|....|++..|...|..+|... ..+++||||+++. +..+++|..+||+.+.-+...
T Consensus 310 ~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 310 NHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred hcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 788999999999988888888888754 5678999986654 445799999999998876543
No 138
>KOG0953|consensus
Probab=99.65 E-value=3.6e-15 Score=162.32 Aligned_cols=281 Identities=16% Similarity=0.152 Sum_probs=179.1
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA 512 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~ 512 (838)
.+-++=+|||.||||.- +++.+.. .+..+|--|.|.||.++++.+.+. ++.+.+++|........
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~-------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS-------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh-------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 35577799999999954 4555533 556799999999999999988886 56666666644332211
Q ss_pred HHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHH-HHHHHHCCccceEEEEeeecccchHHH
Q psy12983 513 QKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDM-KQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 513 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~-~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
. .+.+..+-||.|+.. . -..+++.||||+++|.+...+-.. +.++........+++ .+.+..+
T Consensus 256 ~--~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldl 319 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDL 319 (700)
T ss_pred C--CCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHH
Confidence 1 123677888866641 1 145789999999999876533222 223333333333333 2222333
Q ss_pred HHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCC-eE
Q psy12983 592 TKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLP-VM 670 (838)
Q Consensus 592 ~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~ 670 (838)
....+...-..+.+.. |-....-.-.+.+..-+.....+-++|- -+++.+-.+...+.+.+.. ++
T Consensus 320 V~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHhcCcceE
Confidence 3332211111111111 1111111111233444455555556554 4577788888888877654 99
Q ss_pred EecCCCChhHHHHHHHHHhc--CCceEEEEccCCccCCCCCCccEEEEeCCC---------CCHHHHHHHhcccCcCCCC
Q psy12983 671 CIHGKQKQMKRTTTFFQFCN--AETGILLCTDVAARGLDIPAVDWIVQYDPP---------DDPKEYIHRVGRTARGEGS 739 (838)
Q Consensus 671 ~lhg~m~~~~R~~i~~~F~~--g~~~VLVaT~~~~~GiDip~v~~VI~~d~p---------~s~~~y~Qr~GRagR~~g~ 739 (838)
+++|+++++.|.+--..|.+ ++++||||||++++|+|+ +++-||.++.- .+.++..|.+|||||.+++
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999997 899999999999999999 78888887754 3788999999999997433
Q ss_pred c--cEEEEEeccCchHHHHHHHH
Q psy12983 740 S--GHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 740 ~--g~~i~l~~~~e~~~~~~l~~ 760 (838)
- |.+..+ ..+|...++...+
T Consensus 465 ~~~G~vTtl-~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 465 YPQGEVTTL-HSEDLKLLKRILK 486 (700)
T ss_pred CcCceEEEe-eHhhHHHHHHHHh
Confidence 3 444443 3456666655554
No 139
>KOG0925|consensus
Probab=99.64 E-value=1.9e-14 Score=154.17 Aligned_cols=324 Identities=18% Similarity=0.201 Sum_probs=203.8
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|...+ .++...+.+++..=-.....+.+.+..+.+++-++++|.||||||...--..+..... ....+..
T Consensus 25 Npf~~~p--~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~------~~~~v~C 96 (699)
T KOG0925|consen 25 NPFNGKP--YSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS------HLTGVAC 96 (699)
T ss_pred CCCCCCc--CcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh------hccceee
Confidence 3455554 6667667666643224456667777778888999999999999997533223322222 2366788
Q ss_pred EcCCHHHHHHHHHHHHHHhhh-cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKY-HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~-~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
.-|.|.-|.+++.+..+-+.- .|..++......+...... -+-++|.++|++-..... .+.++++||+|||
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T------~Lky~tDgmLlrEams~p--~l~~y~viiLDea 168 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT------LLKYCTDGMLLREAMSDP--LLGRYGVIILDEA 168 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccccccccCChhH------HHHHhcchHHHHHHhhCc--ccccccEEEechh
Confidence 889999999988777665432 2444433332222111111 122678888877666554 3578999999999
Q ss_pred Ccccc-cC-cHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHH
Q psy12983 553 DRILD-IG-FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF 630 (838)
Q Consensus 553 h~l~~-~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~ 630 (838)
|.-.- .. .-..+++++... ++.+++.||||+.. ..+.. ++. +...+.+.. .+ ..+.+|...+..+..
T Consensus 169 hERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a--~Kfq~-yf~-n~Pll~vpg--~~----PvEi~Yt~e~erDyl 237 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA--EKFQR-YFG-NAPLLAVPG--TH----PVEIFYTPEPERDYL 237 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch--HHHHH-HhC-CCCeeecCC--CC----ceEEEecCCCChhHH
Confidence 96211 11 122334444433 58899999999874 33333 332 444454442 11 122233333333333
Q ss_pred HH----HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC---------CCCeEEecCCCChhHHHHHHHHHh---cC--C
Q psy12983 631 LL----LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI---------DLPVMCIHGKQKQMKRTTTFFQFC---NA--E 692 (838)
Q Consensus 631 ~~----l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~---------~~~v~~lhg~m~~~~R~~i~~~F~---~g--~ 692 (838)
+. ++.+-.....+-+++|....++++..++.+... ...|..+| +.+...+++--. +| .
T Consensus 238 EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~ 313 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYG 313 (699)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCcc
Confidence 32 333333456789999999999999998888742 34577777 333333333221 12 3
Q ss_pred ceEEEEccCCccCCCCCCccEEEEeC------------------CCCCHHHHHHHhcccCcCCCCccEEEEEeccC
Q psy12983 693 TGILLCTDVAARGLDIPAVDWIVQYD------------------PPDDPKEYIHRVGRTARGEGSSGHALLILRPE 750 (838)
Q Consensus 693 ~~VLVaT~~~~~GiDip~v~~VI~~d------------------~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~ 750 (838)
.+|+|+|++++..+-++.+.+||.-+ .|-|..+-.||.|||||. ++|.|+-+|+++
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt--~pGkcfrLYte~ 387 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEE 387 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--CCCceEEeecHH
Confidence 57999999999999999999999644 245788899999999995 899999999764
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=4.8e-13 Score=156.24 Aligned_cols=131 Identities=25% Similarity=0.357 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .++++|.-.--.+.+| -|..+.||-|||+++.+|++-..+ .|+.|-||+++.-||..=++++..++.
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL-------~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNAL-------TGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhh-------cCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 576 7888888766555444 599999999999999999886543 478899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-----HHHHhcC-cccccCCceEEEEeCCCccc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-----LDHLQNT-PEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-----~~~l~~~-~~~~~~~l~lvViDEah~l~ 556 (838)
.+|+++++..++.+..+. +..-.+||+++|+..| .+.+... .....+.+.+.||||+|.++
T Consensus 152 ~LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HhCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999988776655433 3345689999999876 4444332 22334778999999999754
No 141
>KOG0346|consensus
Probab=99.63 E-value=1.4e-16 Score=168.74 Aligned_cols=151 Identities=24% Similarity=0.266 Sum_probs=134.1
Q ss_pred cccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCC
Q psy12983 100 SFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTS 173 (838)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~ 173 (838)
..|.--|+++++||++ +++|+.......++.+++|| ||++||++||..+...+
T Consensus 140 ~~L~d~pdIvV~TP~~------ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L--------------- 198 (569)
T KOG0346|consen 140 VALMDLPDIVVATPAK------LLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL--------------- 198 (569)
T ss_pred HHHccCCCeEEeChHH------HHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhC---------------
Confidence 3456789999999999 99999998888899999999 99999999999999999
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHh-hCCCCCeeeeHH
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK-KNHIGEIVAWHV 252 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~-~~~~~~~iVF~~ 252 (838)
|+..|++|+|||++++|..|.+.+|+ ||+.+.+.++ +...++++.||++.|.+.+|+.+++.+++ ....+++|||+|
T Consensus 199 Pr~~Q~~LmSATl~dDv~~LKkL~l~-nPviLkl~e~-el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVN 276 (569)
T KOG0346|consen 199 PRIYQCFLMSATLSDDVQALKKLFLH-NPVILKLTEG-ELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVN 276 (569)
T ss_pred CchhhheeehhhhhhHHHHHHHHhcc-CCeEEEeccc-cCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEe
Confidence 99999999999999999999999999 9999888644 34466789999999999999999999998 667899999988
Q ss_pred hh---------hhcCCceeEEeeCCCChhh
Q psy12983 253 LL---------LQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 253 ~~---------l~~~~~~~~~~hg~~~~~~ 273 (838)
+. |+..|++...+.|++....
T Consensus 277 tIdr~YrLkLfLeqFGiksciLNseLP~NS 306 (569)
T KOG0346|consen 277 TIDRCYRLKLFLEQFGIKSCILNSELPANS 306 (569)
T ss_pred chhhhHHHHHHHHHhCcHhhhhcccccccc
Confidence 75 3667899999999886543
No 142
>KOG0387|consensus
Probab=99.63 E-value=2.5e-14 Score=161.68 Aligned_cols=322 Identities=17% Similarity=0.194 Sum_probs=206.0
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 417 TKMTEIQARTIPPLLE----GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~----~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
..+.++|++.+..+.+ +...|+.-.+|-|||..- +..|..+.... .-.+.+|||||. .++.||.++|..+.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHHhC
Confidence 4679999999998764 566899999999999752 22222222211 123679999997 56788888888886
Q ss_pred hhcCCeEEEEeCCcch--------HHHHHH-----HhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC
Q psy12983 493 KYHHHTYGLIMGGASR--------QAEAQK-----LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG 559 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~--------~~~~~~-----l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g 559 (838)
. ...+..+++..+. ..-+.. ......|+|+|.+.+.- .. ..+.-..++++|+||.|++-+..
T Consensus 279 p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~-d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 P--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QG-DDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred c--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cC-cccccccccEEEecCcccccCCc
Confidence 5 4566666654431 011111 11235799999777632 11 12223567899999999998864
Q ss_pred cHHHHHHHHHHCCccceEEEEeeeccc-chHHHHHHHccCCC--------------eEEEecCccc--------------
Q psy12983 560 FEEDMKQIVNLLPKRRQTMLFSATTTA-KTETLTKLALKKEP--------------VYIGVDDTKE-------------- 610 (838)
Q Consensus 560 f~~~~~~il~~l~~~~qil~lSAT~~~-~~~~l~~~~l~~~~--------------~~i~~~~~~~-------------- 610 (838)
..+...+..++. .+-+.+|.||.. +..++..++-...| .+|.......
T Consensus 354 --s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 334444444543 445667777653 22222211100000 0000000000
Q ss_pred -------------------cccccceeeEEEEC-----------------------------------------------
Q psy12983 611 -------------------EATVAGLEQGYVVC----------------------------------------------- 624 (838)
Q Consensus 611 -------------------~~~~~~l~~~~~~~----------------------------------------------- 624 (838)
...+..-...++.|
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00000000001111
Q ss_pred ----------------CchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhh-cCCCCeEEecCCCChhHHHHHH
Q psy12983 625 ----------------PSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLN-YIDLPVMCIHGKQKQMKRTTTF 685 (838)
Q Consensus 625 ----------------~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~-~~~~~v~~lhg~m~~~~R~~i~ 685 (838)
...-|+..+..++.. ..+.++++|..++.....+...|. ..++..+.+.|..+...|..++
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 011245555555554 256699999999999999999998 5799999999999999999999
Q ss_pred HHHhcCCc-e-EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE-EEEEeccCc
Q psy12983 686 FQFCNAET-G-ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH-ALLILRPEE 751 (838)
Q Consensus 686 ~~F~~g~~-~-VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~-~i~l~~~~e 751 (838)
++|.+++. . .|++|.+.+-|+|+..++-||.||+.+++++-.|..-||.|.|..+.. +|-|++...
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99998764 3 578999999999999999999999999999999999999997433343 344566533
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=170.24 Aligned_cols=317 Identities=21% Similarity=0.252 Sum_probs=181.1
Q ss_pred CCCCcHHHHHHHHHHHcC----CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 416 FTKMTEIQARTIPPLLEG----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~----~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
-.+|+|+|++|+...+++ ...=+.+.+|+|||++.+..+- .+ ...++|+++|+.+|..|..+.+..-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisE-al--------a~~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISE-AL--------AAARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHH-HH--------hhhheEeecchHHHHHHHHHHHhhc
Confidence 358999999999998875 3345667889999998765543 33 2368999999999999987766653
Q ss_pred hhhcCCeEEEEeCCc--------------------chH---HHHHH--HhcCCcEEEcChHHHHHHHhcCcccccCCceE
Q psy12983 492 MKYHHHTYGLIMGGA--------------------SRQ---AEAQK--LAKGINIIVATPGRLLDHLQNTPEFLYKNLQC 546 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~--------------------~~~---~~~~~--l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~l 546 (838)
... .+....+..+. +.. ..+.. ...+--||++|.+.+...-... ..-+..+++
T Consensus 230 ~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e~G~~~fDl 307 (1518)
T COG4889 230 KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-EAGLDEFDL 307 (1518)
T ss_pred cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-HcCCCCccE
Confidence 221 22222111111 000 11111 1234679999988876543322 244688999
Q ss_pred EEEeCCCcccccCcHHHHHHHHHHCC-----ccceEEEEeeecccchHHHHHHH--------------------------
Q psy12983 547 LIIDEADRILDIGFEEDMKQIVNLLP-----KRRQTMLFSATTTAKTETLTKLA-------------------------- 595 (838)
Q Consensus 547 vViDEah~l~~~gf~~~~~~il~~l~-----~~~qil~lSAT~~~~~~~l~~~~-------------------------- 595 (838)
||.||||+-.+......=..-..+.. +..+-+.|+|||.--.+......
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fg 387 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFG 387 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHH
Confidence 99999998654321110000000000 12245788999753221111111
Q ss_pred ------ccCCCeEE--EecCccccccccceeeEEEECCc-------hhHHHHHHHHHH-hc--------------CCCeE
Q psy12983 596 ------LKKEPVYI--GVDDTKEEATVAGLEQGYVVCPS-------EKRFLLLFTFLK-KN--------------RKKKV 645 (838)
Q Consensus 596 ------l~~~~~~i--~~~~~~~~~~~~~l~~~~~~~~~-------~~k~~~l~~~l~-~~--------------~~~kv 645 (838)
+..+...+ .++.. .. .+.-+.....+. ..+..-...-+. ++ +-.+.
T Consensus 388 eAv~rdlLTDYKVmvlaVd~~---~i-~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 388 EAVERDLLTDYKVMVLAVDKE---VI-AGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred HHHHhhhhccceEEEEEechh---hh-hhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 10011111 11100 00 000000000111 111111111111 11 12367
Q ss_pred EEEecchhhHHHHHHHhhc-------------CCC--CeEEecCCCChhHHHHHHH---HHhcCCceEEEEccCCccCCC
Q psy12983 646 MVFFSSCMSVKFHHELLNY-------------IDL--PVMCIHGKQKQMKRTTTFF---QFCNAETGILLCTDVAARGLD 707 (838)
Q Consensus 646 IIF~~t~~~~~~l~~~L~~-------------~~~--~v~~lhg~m~~~~R~~i~~---~F~~g~~~VLVaT~~~~~GiD 707 (838)
|-||.+.++...+++.+.. .++ .+....|.|+..+|.+.+. .|...+++||--...+++|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 8899888877776655432 133 3445669999999965544 345678889988899999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEe
Q psy12983 708 IPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 747 (838)
Q Consensus 708 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~ 747 (838)
+|..+.||.+++-.+..+.+|.+||+.|....+.+.|+++
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 9999999999999999999999999999323344444443
No 144
>KOG0951|consensus
Probab=99.61 E-value=1.2e-14 Score=170.17 Aligned_cols=323 Identities=16% Similarity=0.203 Sum_probs=221.9
Q ss_pred CCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh-h
Q psy12983 417 TKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK-Y 494 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~-~ 494 (838)
....|+|.++++.+.+ +.++++.+|+|||||.|+.++++. +....++++++|.-+.+..++..|...+. .
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3458999999998875 468999999999999999888875 35678899999999999998887776544 3
Q ss_pred cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC------cHHHHHHHH
Q psy12983 495 HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG------FEEDMKQIV 568 (838)
Q Consensus 495 ~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g------f~~~~~~il 568 (838)
.|..+..+.|..+.. ..+....+|+|+||+++..+ + ....+++.|.||.|.+.+.. ... ++.+.
T Consensus 1214 ~G~~~~~l~ge~s~~---lkl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLD---LKLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred cCceEEecCCccccc---hHHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 466777776665543 23344469999999998654 2 34678999999999988532 112 56666
Q ss_pred HHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCcccccccccee-eEEEECCchhHHHHH----HHHHH--hcC
Q psy12983 569 NLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLE-QGYVVCPSEKRFLLL----FTFLK--KNR 641 (838)
Q Consensus 569 ~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~-~~~~~~~~~~k~~~l----~~~l~--~~~ 641 (838)
..+-++.+++++|..+.+..+. .+... ...+...+..+ ..+..+. +.+-..........+ +..+. ...
T Consensus 1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~-~~v~Nf~p~~R-~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~ 1358 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASS-SGVFNFSPSVR-PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGN 1358 (1674)
T ss_pred HHHHhheeEEEeehhhccchhh---ccccc-cceeecCcccC-CCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcC
Confidence 7777889999999988864333 23221 12222222222 2221222 111112222222211 11121 236
Q ss_pred CCeEEEEecchhhHHHHHHHhhcC----------------------CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEc
Q psy12983 642 KKKVMVFFSSCMSVKFHHELLNYI----------------------DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT 699 (838)
Q Consensus 642 ~~kvIIF~~t~~~~~~l~~~L~~~----------------------~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT 699 (838)
+++.+||+++++++..++..+-.. .....+-|-+++..+..-+...|..|.+.|+|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 779999999999999877554321 1222233899999999999999999999999987
Q ss_pred cCCccCCCCCCccEEE----EeC------CCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHcCCCCcc
Q psy12983 700 DVAARGLDIPAVDWIV----QYD------PPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNE 767 (838)
Q Consensus 700 ~~~~~GiDip~v~~VI----~~d------~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 767 (838)
.- ..|+-...--+|+ .|| .+.+.+...|+.|+|.|+ |.|+++....+..+++......+|++.
T Consensus 1439 ~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkfl~e~lPves 1511 (1674)
T KOG0951|consen 1439 RD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKFLYEPLPVES 1511 (1674)
T ss_pred cc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHhccCcCchHH
Confidence 66 7887775533343 133 345789999999999885 689999999999999888776666653
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=5.4e-13 Score=164.66 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=84.6
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCC--CeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCC--ccEEE
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDL--PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA--VDWIV 715 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~--~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~--v~~VI 715 (838)
..+++++|++++.+..+.+++.|..... +...+.-+++...|.+++++|++++-.||++|..+.+|||+|+ +.+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3567999999999999999999975422 1222332455556899999999998899999999999999997 47788
Q ss_pred EeCCCC------------------------------CHHHHHHHhcccCcCCCCccEEEEEecc-CchHHHHHHHH
Q psy12983 716 QYDPPD------------------------------DPKEYIHRVGRTARGEGSSGHALLILRP-EELGFLRYLKQ 760 (838)
Q Consensus 716 ~~d~p~------------------------------s~~~y~Qr~GRagR~~g~~g~~i~l~~~-~e~~~~~~l~~ 760 (838)
....|. ....+.|.+||.-|.....|..+++-.. ....+-+.+.+
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~ 905 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLE 905 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHH
Confidence 777652 1234589999999964444543333222 23334444443
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.61 E-value=1.4e-15 Score=130.18 Aligned_cols=77 Identities=35% Similarity=0.676 Sum_probs=74.4
Q ss_pred HHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 660 ELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 660 ~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
+.|++.++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|++++||+++.|++...|.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999996
No 147
>KOG0390|consensus
Probab=99.61 E-value=2.8e-13 Score=157.29 Aligned_cols=338 Identities=16% Similarity=0.181 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHc---CC-------CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE---GR-------DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~---~~-------dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
.++|+|++.+..+.+ |. .+|+.-..|+|||+..+.-+...+........--.+.|||+|. .|+.-|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999988764 22 3677778999999986655555554421111122678999996 678888988
Q ss_pred HHHHhhhcCCeEEEEeCCcch--HHHHHHHh-----cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc
Q psy12983 488 LKELMKYHHHTYGLIMGGASR--QAEAQKLA-----KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF 560 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~--~~~~~~l~-----~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf 560 (838)
|.+|.....+....+++..+. ......+. -...|.+.+.+.+.++.+. +....++++|+||.|+..+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh-
Confidence 888876545555555665553 11111111 1246888888888766553 445778999999999987643
Q ss_pred HHHHHHHHHHCCccceEEEEeeecccc-hHHHHHHHccCCCeEEEe----------------------------------
Q psy12983 561 EEDMKQIVNLLPKRRQTMLFSATTTAK-TETLTKLALKKEPVYIGV---------------------------------- 605 (838)
Q Consensus 561 ~~~~~~il~~l~~~~qil~lSAT~~~~-~~~l~~~~l~~~~~~i~~---------------------------------- 605 (838)
..+...+..+.. .+-+++|.||-.+ ..++........|.++..
T Consensus 393 -s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 393 -SLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred -hHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 333444444443 3456788897532 111111100001111000
Q ss_pred -----------cCccccccccceeeEEEECCch-----------------------------------------------
Q psy12983 606 -----------DDTKEEATVAGLEQGYVVCPSE----------------------------------------------- 627 (838)
Q Consensus 606 -----------~~~~~~~~~~~l~~~~~~~~~~----------------------------------------------- 627 (838)
........+.....+++++...
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 0000000111112222222211
Q ss_pred ---------------------------hHHHHHHHHH---HhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCC
Q psy12983 628 ---------------------------KRFLLLFTFL---KKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQK 677 (838)
Q Consensus 628 ---------------------------~k~~~l~~~l---~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~ 677 (838)
.++..|..++ ++....++.+..|-+...+.+.+.++-.|..+..+||.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 1122222222 1122334555566666677777777777999999999999
Q ss_pred hhHHHHHHHHHhcCCc---eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEE--EEecc---
Q psy12983 678 QMKRTTTFFQFCNAET---GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHAL--LILRP--- 749 (838)
Q Consensus 678 ~~~R~~i~~~F~~g~~---~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i--~l~~~--- 749 (838)
..+|+.+++.|.+... -.|.+|.+.+.||++-+++.||.||.+++++.-.|+++||-|- |++-.|+ -|+..
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd-GQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD-GQKKPVYIYRLLATGTI 709 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC-CCcceEEEEEeecCCCc
Confidence 9999999999987533 3567889999999999999999999999999999999999995 6665554 44554
Q ss_pred CchHHHHHHHHcCC
Q psy12983 750 EELGFLRYLKQAKI 763 (838)
Q Consensus 750 ~e~~~~~~l~~~~~ 763 (838)
+|..+.+...+.++
T Consensus 710 EEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 710 EEKIYQRQTHKEGL 723 (776)
T ss_pred hHHHHHHHHHhhhh
Confidence 55556666665543
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.60 E-value=9.9e-13 Score=152.74 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=80.8
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC----CceEEEEccCCccCCCC--------
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA----ETGILLCTDVAARGLDI-------- 708 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g----~~~VLVaT~~~~~GiDi-------- 708 (838)
.++.++|.+.+...++.+++.|...---.....|..+ .|..++++|++. +..||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4558999999999999999999653213345556443 467788899874 78999999999999999
Q ss_pred --CCccEEEEeCCCC-------------------------CHHHHHHHhcccCcCCCC--ccEEEEEeccCchHHHHHH
Q psy12983 709 --PAVDWIVQYDPPD-------------------------DPKEYIHRVGRTARGEGS--SGHALLILRPEELGFLRYL 758 (838)
Q Consensus 709 --p~v~~VI~~d~p~-------------------------s~~~y~Qr~GRagR~~g~--~g~~i~l~~~~e~~~~~~l 758 (838)
..++.||...+|- ..-.+.|-+||.-|.... .|...++-..-...+-+.+
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 2488898877772 123467888998886444 5555555444333333333
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.60 E-value=2.1e-14 Score=136.34 Aligned_cols=144 Identities=43% Similarity=0.622 Sum_probs=111.8
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
+++++.+|||+|||.+++..+...... ....+++|++|++.++.|+.+.+...... ...+....++........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 468999999999999998888877643 34678999999999999999988887765 567777777766665555
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeec
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATT 584 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~ 584 (838)
......+|+++|++.+...+.... .....++++|+||+|.+....+...............+++++||||
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 556778999999999988776553 2346788999999999887654443323344456678899999996
No 150
>KOG0341|consensus
Probab=99.58 E-value=2.3e-16 Score=164.03 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=144.6
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
-+||++|.-|--+...---+++||||| |.|.+... ..+++-+|||. |+||||++|+..|....
T Consensus 286 ciGG~~v~eql~~v~~GvHivVATPGR------L~DmL~KK-~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F---- 354 (610)
T KOG0341|consen 286 CIGGVPVREQLDVVRRGVHIVVATPGR------LMDMLAKK-IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF---- 354 (610)
T ss_pred hhcCccHHHHHHHHhcCeeEEEcCcch------HHHHHHHh-hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----
Confidence 479999999988888888999999999 88887543 35788999998 99999999999999999
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 242 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~ 242 (838)
+.+|||+|||||||.+|+.+|+..+- .|+.|++ +...+.+-++.|.+-.|..+.|..+|...|.+.
T Consensus 355 -----------K~QRQTLLFSATMP~KIQ~FAkSALV-KPvtvNV--GRAGAAsldViQevEyVkqEaKiVylLeCLQKT 420 (610)
T KOG0341|consen 355 -----------KGQRQTLLFSATMPKKIQNFAKSALV-KPVTVNV--GRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT 420 (610)
T ss_pred -----------hhhhheeeeeccccHHHHHHHHhhcc-cceEEec--ccccccchhHHHHHHHHHhhhhhhhHHHHhccC
Confidence 78999999999999999999999999 8999765 555555556788877788888999998888776
Q ss_pred CCCCeeeeH---------HhhhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcccceE
Q psy12983 243 HIGEIVAWH---------VLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVI 294 (838)
Q Consensus 243 ~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (838)
.| +++||+ +.+|-..|++++.+||..+.-+.-. .+.++-.++.--|+.+.
T Consensus 421 ~P-pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~-ai~afr~gkKDVLVATD 479 (610)
T KOG0341|consen 421 SP-PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHY-AIEAFRAGKKDVLVATD 479 (610)
T ss_pred CC-ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHH-HHHHHhcCCCceEEEec
Confidence 54 699994 5566677999999999988765443 33343334444444443
No 151
>KOG1000|consensus
Probab=99.58 E-value=3.5e-13 Score=144.92 Aligned_cols=323 Identities=15% Similarity=0.159 Sum_probs=211.1
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
..+++|..-+++.+.. .+.|+|.+.+...+ +|..+++...+|-|||+.++..+.... ..-..|
T Consensus 182 a~~~~l~ev~d~kLvs--------~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyr--------aEwpll 245 (689)
T KOG1000|consen 182 AAPSDLNEVMDPKLVS--------RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYR--------AEWPLL 245 (689)
T ss_pred cCHHHHhhccCHHHHH--------hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHh--------hcCcEE
Confidence 4455555446677765 46899999988755 577899999999999998765544332 234579
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
|+||. ++-..|.+.+..++..... +.+..++.+.-. .+-....|.|.+.+.+..+-.. +.-..+++||+||.
T Consensus 246 iVcPA-svrftWa~al~r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEs 317 (689)
T KOG1000|consen 246 IVCPA-SVRFTWAKALNRFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDES 317 (689)
T ss_pred EEecH-HHhHHHHHHHHHhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEech
Confidence 99996 4566778888887765433 444444443321 1123357889998887654322 22245899999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccc-------------------hHHHHHHHccCCCeEEEecCcc----
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAK-------------------TETLTKLALKKEPVYIGVDDTK---- 609 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~-------------------~~~l~~~~l~~~~~~i~~~~~~---- 609 (838)
|++.+.. ....+.++..+....+++++|.||.-. -.++...+.......+..+...
T Consensus 318 H~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl 396 (689)
T KOG1000|consen 318 HMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNL 396 (689)
T ss_pred hhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCH
Confidence 9987653 333555555555567899999998621 1122222221111111110000
Q ss_pred -c-------------------cccccceeeEEEECCc-------------------------------------hhHHHH
Q psy12983 610 -E-------------------EATVAGLEQGYVVCPS-------------------------------------EKRFLL 632 (838)
Q Consensus 610 -~-------------------~~~~~~l~~~~~~~~~-------------------------------------~~k~~~ 632 (838)
+ ...+....+..+.+.. ..|...
T Consensus 397 ~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~a 476 (689)
T KOG1000|consen 397 EELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAA 476 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHH
Confidence 0 0001111111111110 011222
Q ss_pred HHHHHHh------cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC-CceE-EEEccCCcc
Q psy12983 633 LFTFLKK------NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA-ETGI-LLCTDVAAR 704 (838)
Q Consensus 633 l~~~l~~------~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~V-LVaT~~~~~ 704 (838)
..+++.. ....+.+||+......+.+...+.+.+++...+.|..+..+|....+.|+.. +..| +++-.+++.
T Consensus 477 v~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gv 556 (689)
T KOG1000|consen 477 VCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGV 556 (689)
T ss_pred HHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccc
Confidence 3333333 2567999999999999999999999999999999999999999999999865 4555 456688999
Q ss_pred CCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE
Q psy12983 705 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH 742 (838)
Q Consensus 705 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~ 742 (838)
|+++...+.|++..+++++.-++|.-.|+.|. |++..
T Consensus 557 GLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRi-GQkss 593 (689)
T KOG1000|consen 557 GLTLTAASVVVFAELHWNPGVLLQAEDRAHRI-GQKSS 593 (689)
T ss_pred ceeeeccceEEEEEecCCCceEEechhhhhhc-cccce
Confidence 99999999999999999999999999999997 44443
No 152
>KOG0384|consensus
Probab=99.57 E-value=1.3e-13 Score=162.07 Aligned_cols=336 Identities=15% Similarity=0.220 Sum_probs=215.1
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCC
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNG 468 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 468 (838)
...|..+. ..+..+. | .+++.+|.+.++.++ .++++|+.-.+|-|||+.-+-- +..+... .+-.
T Consensus 353 rp~~~Kle--~qp~~~~-----g-~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~f-l~~l~~~---~~~~ 420 (1373)
T KOG0384|consen 353 RPRFRKLE--KQPEYKG-----G-NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITF-LSYLFHS---LQIH 420 (1373)
T ss_pred chhHHHhh--cCccccc-----c-chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHH-HHHHHHh---hhcc
Confidence 45566554 3333332 3 589999999999876 4789999999999999753222 2222110 0123
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh----c-----CCcEEEcChHHHHHHHhcCccc
Q psy12983 469 TGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA----K-----GINIIVATPGRLLDHLQNTPEF 539 (838)
Q Consensus 469 ~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~----~-----~~~IvV~Tp~~l~~~l~~~~~~ 539 (838)
...||++|...+.. |.+.|..+. ..++.+.+|.....+..+... . ..+++++|.+.++.--.. +
T Consensus 421 gpflvvvplst~~~-W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L 493 (1373)
T KOG0384|consen 421 GPFLVVVPLSTITA-WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---L 493 (1373)
T ss_pred CCeEEEeehhhhHH-HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---h
Confidence 44789999766544 455666654 567777777766655544331 1 378999999887542221 1
Q ss_pred ccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc-chHHHHHHHccCCCeE----------------
Q psy12983 540 LYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA-KTETLTKLALKKEPVY---------------- 602 (838)
Q Consensus 540 ~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~-~~~~l~~~~l~~~~~~---------------- 602 (838)
.--.+.+++|||||++.+.. ..+...+..+..+- -+++|.||-. .+.++..+.....|..
T Consensus 494 ~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e 570 (1373)
T KOG0384|consen 494 SKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETE 570 (1373)
T ss_pred ccCCcceeeecHHhhcCchH--HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhH
Confidence 11246789999999998653 22223344444333 4666777643 4444443321111111
Q ss_pred ---------------------------------EEecCccc-----------------------cccccc--------ee
Q psy12983 603 ---------------------------------IGVDDTKE-----------------------EATVAG--------LE 618 (838)
Q Consensus 603 ---------------------------------i~~~~~~~-----------------------~~~~~~--------l~ 618 (838)
+.+.-... ...+-+ -.
T Consensus 571 ~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccN 650 (1373)
T KOG0384|consen 571 EQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCN 650 (1373)
T ss_pred HHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcC
Confidence 11100000 000000 00
Q ss_pred eEEEECCchhHH----------HHHHHHHHh---------------cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEec
Q psy12983 619 QGYVVCPSEKRF----------LLLFTFLKK---------------NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIH 673 (838)
Q Consensus 619 ~~~~~~~~~~k~----------~~l~~~l~~---------------~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lh 673 (838)
+-|.+-..+.+. ..+..++.. ..+.+||||..-+....-++++|...+++...+.
T Consensus 651 HpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLD 730 (1373)
T KOG0384|consen 651 HPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLD 730 (1373)
T ss_pred CccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceecc
Confidence 111211111111 122222221 2467999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhc---CCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE--EEEEec
Q psy12983 674 GKQKQMKRTTTFFQFCN---AETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH--ALLILR 748 (838)
Q Consensus 674 g~m~~~~R~~i~~~F~~---g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~ 748 (838)
|.+..+.|++.++.|.. ..+..|+||.+.+-|||+..+++||.||..+++..=.|...||.|- |++.. +|-|++
T Consensus 731 GsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRI-GQkk~VnVYRLVT 809 (1373)
T KOG0384|consen 731 GSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRI-GQKKHVNVYRLVT 809 (1373)
T ss_pred CCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhh-cccceEEEEEEec
Confidence 99999999999999985 4567899999999999999999999999999999999999999997 55543 566677
Q ss_pred cCc
Q psy12983 749 PEE 751 (838)
Q Consensus 749 ~~e 751 (838)
...
T Consensus 810 k~T 812 (1373)
T KOG0384|consen 810 KNT 812 (1373)
T ss_pred CCc
Confidence 644
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=2.2e-14 Score=143.66 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE-------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~-------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
+|+++|.+++..+.+ .+++++.+|||+|||.+++..+.+.. . ++++++|+..|+.|+.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~--------~--~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA--------R--KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------C--EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------c--ceeEecCHHHHHHHHHHHHHH
Confidence 689999999999884 58899999999999999887666653 1 899999999999999999966
Q ss_pred HhhhcCCeEEE-----------EeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc----------ccccCCceEEEE
Q psy12983 491 LMKYHHHTYGL-----------IMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP----------EFLYKNLQCLII 549 (838)
Q Consensus 491 ~~~~~~~~v~~-----------l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~----------~~~~~~l~lvVi 549 (838)
+.......... ..................+++++|..++........ .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 65432111100 011111111222223467999999999987654321 123356789999
Q ss_pred eCCCcccccCcHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 550 DEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
||||++.... ....++. .+...+++|||||.
T Consensus 153 DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred ehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 9999975542 1455555 45677999999986
No 154
>KOG0333|consensus
Probab=99.54 E-value=9.7e-15 Score=157.90 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=132.1
Q ss_pred HHHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecc-
Q psy12983 88 RIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTE- 160 (838)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d- 160 (838)
++|||+...-|--=+.---.+++|+||+ |+|-+.+.. +.++.+.++| |+||||++|+.+|+..+=.
T Consensus 355 svigg~s~EEq~fqls~gceiviatPgr------Lid~Lenr~-lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPss 427 (673)
T KOG0333|consen 355 SVIGGLSFEEQGFQLSMGCEIVIATPGR------LIDSLENRY-LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSS 427 (673)
T ss_pred EEecccchhhhhhhhhccceeeecCchH------HHHHHHHHH-HHhccCceEeccchhhhhcccccHHHHHHHHhCCcc
Confidence 5789988776632233344567888888 777766543 3456666677 9999999999999888722
Q ss_pred --ccc------cccccCcCC-CCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchH
Q psy12983 161 --CPN------LTSHPFNLT-SAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 231 (838)
Q Consensus 161 --~~d------l~~i~~~l~-~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K 231 (838)
.|| -.....+.. ..+-|||+|||||||+.|..||+.||. +|+.+.+ +......+.|+|.++.++++.|
T Consensus 428 n~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr-~pv~vti--g~~gk~~~rveQ~v~m~~ed~k 504 (673)
T KOG0333|consen 428 NAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR-RPVVVTI--GSAGKPTPRVEQKVEMVSEDEK 504 (673)
T ss_pred ccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh-CCeEEEe--ccCCCCccchheEEEEecchHH
Confidence 111 000011111 113499999999999999999999999 9999766 4555677789999999999999
Q ss_pred HHHHHHHHhhCCCCCeeeeHH---------hhhhcCCceeEEeeCCCChhh
Q psy12983 232 FLLLFTFLKKNHIGEIVAWHV---------LLLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 232 ~~~L~~ll~~~~~~~~iVF~~---------~~l~~~~~~~~~~hg~~~~~~ 273 (838)
+..|..++......++|||+| ..|+..|+.|.++||..+.-+
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 999999999988889999954 456888999999999987654
No 155
>KOG0328|consensus
Probab=99.52 E-value=7.7e-15 Score=147.35 Aligned_cols=141 Identities=20% Similarity=0.239 Sum_probs=118.2
Q ss_pred eeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCceEEE
Q psy12983 108 KLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTML 181 (838)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlL 181 (838)
.+..+||+ .+|.++... .....+++|| ||+.||++++-+|...+ |.+.|.++
T Consensus 148 vVsGtPGr------v~dmikr~~-L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l---------------p~~~Qvv~ 205 (400)
T KOG0328|consen 148 VVSGTPGR------VLDMIKRRS-LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL---------------PPGAQVVL 205 (400)
T ss_pred EeeCCCch------HHHHHHhcc-ccccceeEEEeccHHHHHHhhHHHHHHHHHHhC---------------CCCceEEE
Confidence 34556676 677765433 2345667777 99999999999999999 88999999
Q ss_pred EEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHHhhh-----
Q psy12983 182 FSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHVLLL----- 255 (838)
Q Consensus 182 FSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~~~l----- 255 (838)
||||+|.+|.+..+.||. +|++|-+ +.+..+.++|+|+|+-++.++ |+..|+.+.......+++||||+..
T Consensus 206 ~SATlp~eilemt~kfmt-dpvrilv--krdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 206 VSATLPHEILEMTEKFMT-DPVRILV--KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 282 (400)
T ss_pred EeccCcHHHHHHHHHhcC-CceeEEE--ecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHH
Confidence 999999999999999999 9999755 556788899999999998755 9999999999998999999987764
Q ss_pred ----hcCCceeEEeeCCCChhh
Q psy12983 256 ----QVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 256 ----~~~~~~~~~~hg~~~~~~ 273 (838)
+...+.|..+||+|..-+
T Consensus 283 tekm~~~nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 283 TEKMREANFTVSSMHGDMEQKE 304 (400)
T ss_pred HHHHHhhCceeeeccCCcchhH
Confidence 456789999999997664
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=1.3e-12 Score=153.74 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=93.8
Q ss_pred CCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH---HHHHHhcC
Q psy12983 442 TGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA---EAQKLAKG 518 (838)
Q Consensus 442 TGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~---~~~~l~~~ 518 (838)
+|||||.+|+-.+-..+. .|+++||++|...|+.|+.+.|++.+. ...+..++++.+..+ .|..+..+
T Consensus 169 ~GSGKTevyl~~i~~~l~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 169 PGEDWARRLAAAAAATLR-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred CCCcHHHHHHHHHHHHHH-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 599999999888877763 488999999999999999999998754 245777777666544 33444444
Q ss_pred -CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC---cH---HHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 519 -INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG---FE---EDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 519 -~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g---f~---~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
.+||||| +..-...++++++|||||.|.-+-.. -. .++... .....+..+++.|||++-.....
T Consensus 240 ~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 240 QARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCCHHHHHH
Confidence 7999999 22223457899999999999533221 11 222222 22235788999999999765544
Q ss_pred HH
Q psy12983 592 TK 593 (838)
Q Consensus 592 ~~ 593 (838)
..
T Consensus 311 ~~ 312 (665)
T PRK14873 311 VE 312 (665)
T ss_pred Hh
Confidence 33
No 157
>KOG0392|consensus
Probab=99.51 E-value=6.2e-13 Score=155.78 Aligned_cols=323 Identities=17% Similarity=0.212 Sum_probs=204.7
Q ss_pred CCcHHHHHHHHHHH--c--CCCEEEEecCCCCchhhhHHHHHHHHHhc--cCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLL--E--GRDLVGSAKTGSGKTLAFLVPAVELIYNL--KFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~--~--~~dvlv~apTGsGKTl~~~lp~l~~l~~~--~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
.+|.||++.++.+. . +=+.|+|-++|-|||+..+-.+..-.++. +..+-.....|||||. .|+--|..+++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 47899999998863 2 35789999999999997543333333332 1112234448999997 5777788888888
Q ss_pred hhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 492 MKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
+.. .++....|+...+...+.-.+..+|+|++++.+.+-... +.-.++.++|+||-|-+.+. ...+....+.+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 765 344444554444333333334579999999888643332 11245789999999988764 34455555555
Q ss_pred CccceEEEEeeeccc-chHHHHHHHccCCCeEEEecCccc----------------------------------------
Q psy12983 572 PKRRQTMLFSATTTA-KTETLTKLALKKEPVYIGVDDTKE---------------------------------------- 610 (838)
Q Consensus 572 ~~~~qil~lSAT~~~-~~~~l~~~~l~~~~~~i~~~~~~~---------------------------------------- 610 (838)
+.+.+ +.+|.||.. .+.++...+-.-.|-+++......
T Consensus 1127 ~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 54444 557888753 333322221111111111100000
Q ss_pred -------cccccceee-EE--------------------------------------------------------EECC-
Q psy12983 611 -------EATVAGLEQ-GY--------------------------------------------------------VVCP- 625 (838)
Q Consensus 611 -------~~~~~~l~~-~~--------------------------------------------------------~~~~- 625 (838)
...+.++.| +| +..+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000000000 00 0000
Q ss_pred ----------------------chhHHHHHHHHHHhc----------------CCCeEEEEecchhhHHHHHHHhhcCC-
Q psy12983 626 ----------------------SEKRFLLLFTFLKKN----------------RKKKVMVFFSSCMSVKFHHELLNYID- 666 (838)
Q Consensus 626 ----------------------~~~k~~~l~~~l~~~----------------~~~kvIIF~~t~~~~~~l~~~L~~~~- 666 (838)
...|+.+|..++..- .+.+++|||.-+..++.+.+.|-+..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 112334444444421 24689999999999999998887653
Q ss_pred --CCeEEecCCCChhHHHHHHHHHhcC-CceEEE-EccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE
Q psy12983 667 --LPVMCIHGKQKQMKRTTTFFQFCNA-ETGILL-CTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH 742 (838)
Q Consensus 667 --~~v~~lhg~m~~~~R~~i~~~F~~g-~~~VLV-aT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~ 742 (838)
+....+.|..++.+|.++.++|.++ .++||+ +|.+.+-|+|+.++++||+++-.|++..-.|.+.||.|- |++..
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI-GQKrv 1444 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI-GQKRV 1444 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh-cCcee
Confidence 3344789999999999999999998 678765 678999999999999999999999999999999999996 55533
Q ss_pred --EEEEeccC
Q psy12983 743 --ALLILRPE 750 (838)
Q Consensus 743 --~i~l~~~~ 750 (838)
+|-++...
T Consensus 1445 VNVyRlItrG 1454 (1549)
T KOG0392|consen 1445 VNVYRLITRG 1454 (1549)
T ss_pred eeeeeehhcc
Confidence 45555553
No 158
>KOG0348|consensus
Probab=99.48 E-value=7e-15 Score=159.18 Aligned_cols=148 Identities=22% Similarity=0.294 Sum_probs=119.4
Q ss_pred HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecc---
Q psy12983 90 VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTE--- 160 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d--- 160 (838)
.||=.=|..-.-++.-=.++|.|||| |+|||++|..+.+++++|+| +|++||++|+..|+..+-+
T Consensus 247 mGGEkkKSEKARLRKGiNILIgTPGR------LvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~ 320 (708)
T KOG0348|consen 247 MGGEKKKSEKARLRKGINILIGTPGR------LVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQN 320 (708)
T ss_pred ecccccccHHHHHhcCceEEEcCchH------HHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccc
Confidence 45555566666788888899999999 99999999999999999999 9999999999999988843
Q ss_pred --ccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEec---------------CC--------cccc
Q psy12983 161 --CPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD---------------TK--------EEAT 215 (838)
Q Consensus 161 --~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~---------------~~--------~~~~ 215 (838)
|.|. +| |.++|.||.|||+++.|.+|+...|+ ||+.|.++. .. ....
T Consensus 321 ~e~~~~-~l------p~q~q~mLlSATLtd~V~rLa~~sLk-Dpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 321 AECKDP-KL------PHQLQNMLLSATLTDGVNRLADLSLK-DPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred hhcccc-cc------cHHHHhHhhhhhhHHHHHHHhhcccc-CceeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 3321 12 55799999999999999999999999 999987321 11 1345
Q ss_pred cccceEEEEECCcchHHHHHHHHHhh----CCCCCeeeeH
Q psy12983 216 VAGLEQGYVVCPSEKRFLLLFTFLKK----NHIGEIVAWH 251 (838)
Q Consensus 216 ~~~i~q~~v~v~~~~K~~~L~~ll~~----~~~~~~iVF~ 251 (838)
++.+.|.|++||..-++..|..+|.. ....++|||+
T Consensus 393 PeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~ 432 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFF 432 (708)
T ss_pred cHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEE
Confidence 67789999999999888888877763 3345789994
No 159
>KOG0326|consensus
Probab=99.45 E-value=2.5e-14 Score=145.94 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=119.0
Q ss_pred CeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCceEE
Q psy12983 107 SKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTM 180 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtl 180 (838)
-.++++||| +||+++..-. .++.+..+| +|+..|.+-+++++..+ |+.||.+
T Consensus 205 H~~vgTPGR------IlDL~~KgVa-~ls~c~~lV~DEADKlLs~~F~~~~e~li~~l---------------P~~rQil 262 (459)
T KOG0326|consen 205 HLVVGTPGR------ILDLAKKGVA-DLSDCVILVMDEADKLLSVDFQPIVEKLISFL---------------PKERQIL 262 (459)
T ss_pred EEEEcCChh------HHHHHhcccc-cchhceEEEechhhhhhchhhhhHHHHHHHhC---------------Cccceee
Confidence 356899999 9999765443 456666677 88888888888888888 9999999
Q ss_pred EEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHhh------
Q psy12983 181 LFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLL------ 254 (838)
Q Consensus 181 LFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~~------ 254 (838)
|||||+|--|+.+...+|+ +|..|++- ++.+..+|+|||.+|.+++|...|..++++....++|||||+.
T Consensus 263 lySATFP~tVk~Fm~~~l~-kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELL 338 (459)
T KOG0326|consen 263 LYSATFPLTVKGFMDRHLK-KPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELL 338 (459)
T ss_pred EEecccchhHHHHHHHhcc-Ccceeehh---hhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHH
Confidence 9999999999999999999 99998875 3467788999999999999999999999999999999998664
Q ss_pred ---hhcCCceeEEeeCCCC
Q psy12983 255 ---LQVIKIKVQTRIGKED 270 (838)
Q Consensus 255 ---l~~~~~~~~~~hg~~~ 270 (838)
...+|+.|..+|.+|-
T Consensus 339 AkKITelGyscyyiHakM~ 357 (459)
T KOG0326|consen 339 AKKITELGYSCYYIHAKMA 357 (459)
T ss_pred HHHHHhccchhhHHHHHHH
Confidence 3568999999999874
No 160
>KOG0389|consensus
Probab=99.44 E-value=3.2e-12 Score=144.68 Aligned_cols=340 Identities=14% Similarity=0.208 Sum_probs=210.9
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
-|+ ++-+||.-.++++. .+.+.|+.-.+|-|||... ++.+..|.+. +....-|||||...|-. |.++|.
T Consensus 396 s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~----g~~gpHLVVvPsSTleN-WlrEf~ 468 (941)
T KOG0389|consen 396 SGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI----GNPGPHLVVVPSSTLEN-WLREFA 468 (941)
T ss_pred CCC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc----CCCCCcEEEecchhHHH-HHHHHH
Confidence 456 69999999998864 4678899999999999653 4444444432 22344699999876643 444555
Q ss_pred HHhhhcCCeEEEEeCCcchHHHHHH-Hhc---CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHH
Q psy12983 490 ELMKYHHHTYGLIMGGASRQAEAQK-LAK---GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMK 565 (838)
Q Consensus 490 ~~~~~~~~~v~~l~gg~~~~~~~~~-l~~---~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~ 565 (838)
+|+. .+.+...+|......+.+. +.. +++|+++|+..+-..-.....+.-.+++++|+||.|++.+.+ ...++
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~ 545 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYK 545 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHH
Confidence 5433 4566666776654443332 222 589999997655321111112233568899999999998875 45566
Q ss_pred HHHHHCCccceEEEEeeeccc-chHHHHHHH-------------------------------------------------
Q psy12983 566 QIVNLLPKRRQTMLFSATTTA-KTETLTKLA------------------------------------------------- 595 (838)
Q Consensus 566 ~il~~l~~~~qil~lSAT~~~-~~~~l~~~~------------------------------------------------- 595 (838)
.+++.- ...-+++|.||-. ...++..+.
T Consensus 546 ~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 546 HLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred Hhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 665542 3456778888642 111111100
Q ss_pred ---------ccC---CCeEEE---ecCccc-------------------cccccc---------------eeeEEE----
Q psy12983 596 ---------LKK---EPVYIG---VDDTKE-------------------EATVAG---------------LEQGYV---- 622 (838)
Q Consensus 596 ---------l~~---~~~~i~---~~~~~~-------------------~~~~~~---------------l~~~~~---- 622 (838)
+.. ....|. ...... .....+ +.+.++
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHH
Confidence 000 000000 000000 000000 000000
Q ss_pred ---------------EC--------------------------------C-----chhHHHHHHHHHHhc--CCCeEEEE
Q psy12983 623 ---------------VC--------------------------------P-----SEKRFLLLFTFLKKN--RKKKVMVF 648 (838)
Q Consensus 623 ---------------~~--------------------------------~-----~~~k~~~l~~~l~~~--~~~kvIIF 648 (838)
.+ . ...|...|..++... .+.+++||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 00 0 011223333333321 35799999
Q ss_pred ecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC-c-eEEEEccCCccCCCCCCccEEEEeCCCCCHHHH
Q psy12983 649 FSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE-T-GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEY 726 (838)
Q Consensus 649 ~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~-~-~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y 726 (838)
........-+...|.-+++....+.|...-..|+.+++.|...+ + -.|++|.+.+.|||+..+++||.+|...++-.-
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD 863 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDD 863 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCccc
Confidence 99999999999999999999999999999999999999998765 3 357899999999999999999999999999889
Q ss_pred HHHhcccCcCCCCcc--EEEEEeccCc-hHHHHHHHHcCCCCc
Q psy12983 727 IHRVGRTARGEGSSG--HALLILRPEE-LGFLRYLKQAKIPLN 766 (838)
Q Consensus 727 ~Qr~GRagR~~g~~g--~~i~l~~~~e-~~~~~~l~~~~~~~~ 766 (838)
.|.-.||.|. |+.- .++-|++... .+.+..+.+.++.++
T Consensus 864 ~QAEDRcHRv-GQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 864 KQAEDRCHRV-GQTKPVTVYRLITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred chhHHHHHhh-CCcceeEEEEEEecCcHHHHHHHHHHHhhhhh
Confidence 9999999997 4443 3455666644 334455555444443
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=4.5e-12 Score=150.31 Aligned_cols=310 Identities=21% Similarity=0.219 Sum_probs=181.3
Q ss_pred CCcHHHHHHHHHHHc--------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE--------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~--------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
.-..||-.|++.+.. |-=++-.|.||+|||++=...|..+- .++.|.+..|..-.|.|.-|.-+.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs-----d~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR-----DDKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC-----CCCCCceEEEEccccceeccchHHHH
Confidence 446799999988764 12366788999999998655554432 22556788888888888888888888
Q ss_pred HHhhhcCCeEEEEeCCcchHHHH-------------------------------------------HHHhc--------C
Q psy12983 490 ELMKYHHHTYGLIMGGASRQAEA-------------------------------------------QKLAK--------G 518 (838)
Q Consensus 490 ~~~~~~~~~v~~l~gg~~~~~~~-------------------------------------------~~l~~--------~ 518 (838)
+.+....-...+++|+....+.. ..+.+ .
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 77654444444555543221111 01110 2
Q ss_pred CcEEEcChHHHHHHHhcC--cccccC----CceEEEEeCCCcccccCcHHHHHHHHHHC-CccceEEEEeeecccchHHH
Q psy12983 519 INIIVATPGRLLDHLQNT--PEFLYK----NLQCLIIDEADRILDIGFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 519 ~~IvV~Tp~~l~~~l~~~--~~~~~~----~l~lvViDEah~l~~~gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l 591 (838)
.+++|||++.++...... +...+. .-+.|||||+|.+....+ ..+..++... .-..++++||||+|+.....
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 579999999998765321 111111 125799999999765543 2233333321 12678999999999865432
Q ss_pred H-HHHc---------cC---CCeEEEe---cCccccc--------------------------cccceeeEEEECCch--
Q psy12983 592 T-KLAL---------KK---EPVYIGV---DDTKEEA--------------------------TVAGLEQGYVVCPSE-- 627 (838)
Q Consensus 592 ~-~~~l---------~~---~~~~i~~---~~~~~~~--------------------------~~~~l~~~~~~~~~~-- 627 (838)
. ..+. +. .+..+.. +...... .+..-.-..+.++..
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 1 1110 11 1211211 1100000 000001112222221
Q ss_pred ---hHHHHHHHHHHh--------c------CCCe---EEEEecchhhHHHHHHHhhcC------CCCeEEecCCCChhHH
Q psy12983 628 ---KRFLLLFTFLKK--------N------RKKK---VMVFFSSCMSVKFHHELLNYI------DLPVMCIHGKQKQMKR 681 (838)
Q Consensus 628 ---~k~~~l~~~l~~--------~------~~~k---vIIF~~t~~~~~~l~~~L~~~------~~~v~~lhg~m~~~~R 681 (838)
.....+...+.+ + .+++ .+|-+++++.+-.+++.|-.. .+.+++||+......|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 122222222211 1 1222 367778888877777777644 3458899999987777
Q ss_pred HHHHHHH----------------------hc----CCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCc
Q psy12983 682 TTTFFQF----------------------CN----AETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 735 (838)
Q Consensus 682 ~~i~~~F----------------------~~----g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 735 (838)
..+++.. .+ +...|+|+|++++.|+|+ +.+++| .-|.++.+++|++||+.|
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R 878 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNR 878 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccc
Confidence 7766543 12 356899999999999999 445554 457789999999999999
Q ss_pred C
Q psy12983 736 G 736 (838)
Q Consensus 736 ~ 736 (838)
.
T Consensus 879 ~ 879 (1110)
T TIGR02562 879 H 879 (1110)
T ss_pred c
Confidence 5
No 162
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=3.9e-13 Score=115.55 Aligned_cols=80 Identities=40% Similarity=0.666 Sum_probs=76.2
Q ss_pred HHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 657 FHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 657 ~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
.+++.|+..++.+..+||+|+..+|..+++.|.+++..||++|+++++|+|+|++++||.++.|.+..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999995
No 163
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=3.6e-11 Score=144.88 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCChhHHHHHHHHHhcCCc-eEEEEccCCccCCCCCC--ccEEEE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQMKRTTTFFQFCNAET-GILLCTDVAARGLDIPA--VDWIVQ 716 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GiDip~--v~~VI~ 716 (838)
.+++++||+++.+..+.+++.+...... ....+|.. .+...+++|.++.- .++|+|..+++|+|+|+ ...||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4448999999999999999999876543 33444443 45588888887665 89999999999999986 467887
Q ss_pred eCCCC------------------------------CHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 717 YDPPD------------------------------DPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 717 ~d~p~------------------------------s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
...|. ....+.|.+||+-|..+..|..+++-.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77662 345679999999996445555555533
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.41 E-value=1.2e-10 Score=139.65 Aligned_cols=101 Identities=24% Similarity=0.347 Sum_probs=73.4
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhc----CCceEEEEccCCccCCCCCC--ccE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCN----AETGILLCTDVAARGLDIPA--VDW 713 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~----g~~~VLVaT~~~~~GiDip~--v~~ 713 (838)
..+.++|++++.+..+.+++.|... +.. ...+|. ..|..+++.|++ ++..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3445899999999999999998743 333 344564 246778877764 67789999999999999986 688
Q ss_pred EEEeCCCC----C--------------------------HHHHHHHhcccCcCCCCccEEEE
Q psy12983 714 IVQYDPPD----D--------------------------PKEYIHRVGRTARGEGSSGHALL 745 (838)
Q Consensus 714 VI~~d~p~----s--------------------------~~~y~Qr~GRagR~~g~~g~~i~ 745 (838)
||...+|. + ...+.|.+||.-|.....|..++
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~i 670 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTI 670 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEE
Confidence 88877662 1 12457889999996334444333
No 165
>PF08925 DUF1907: Domain of Unknown Function (DUF1907); InterPro: IPR015021 The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase []. ; GO: 0005634 nucleus; PDB: 1XCR_B.
Probab=99.40 E-value=1.1e-13 Score=142.39 Aligned_cols=178 Identities=34% Similarity=0.482 Sum_probs=89.6
Q ss_pred eeccccccccccceEeeccccccccccCcCCCCC--CceEEE--EEEe--CC----h---HHHHHHHHhccCCCE--EE-
Q psy12983 142 VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE--RRQTML--FSAT--TT----A---KTETLTKLALKKEPV--YI- 205 (838)
Q Consensus 142 ~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~--~rQtlL--FSAT--~~----~---~v~~la~~~l~~~p~--~i- 205 (838)
+|+.|+..+|+++.+.++|||||++-+++++.+. +.-+++ -+-. +| + ++.++++..-.+... .|
T Consensus 1 VLq~gL~~NF~~v~V~VvdCPDL~~~PF~l~~~GL~G~~~i~eVGG~pyL~P~~~~dK~Ydl~~i~~~~~~~~~~~~iiG 80 (284)
T PF08925_consen 1 VLQSGLKSNFETVSVSVVDCPDLTQPPFNLASEGLCGNPRIAEVGGPPYLLPLVQRDKVYDLKEIAKRIELPGAFGFIIG 80 (284)
T ss_dssp HHHHHHCCCEEEEEEEEEE---TTSTTT--SSS--BSS-EEEEEE-GGGTSSS-BTT-EEEHHHHHHHTT-TT-E--EEE
T ss_pred ChhhhhhhhcceeEEEEEeCCCCCCCCccCCcCCCCCCCeEEEecCCcccCcccccccccCHHHHHHHhCCCCccceEec
Confidence 4678999999999999999999999999998653 222221 0000 11 1 255566543221122 22
Q ss_pred -----------------EEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCC--CeeeeHHhhh--hcCCceeEE
Q psy12983 206 -----------------GVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIG--EIVAWHVLLL--QVIKIKVQT 264 (838)
Q Consensus 206 -----------------~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~--~~iVF~~~~l--~~~~~~~~~ 264 (838)
++....+..... -.-++..+..++....+..+....... -+-.|+++-. .++++.|..
T Consensus 81 AGAgp~~~~g~NcEli~n~~~~~~~~~~~-n~s~~a~v~~~~~~~~~ek~~~~~~~f~Ll~Nlf~SeG~pGkVlkV~ak~ 159 (284)
T PF08925_consen 81 AGAGPWPVVGSNCELIPNVSWSNEGDTVV-NGSRIAKVNPENGECVLEKIPDDETRFALLANLFVSEGKPGKVLKVKAKK 159 (284)
T ss_dssp EEE--HHHHSS--EEE-EEE--BTTB--E-E--EEEEE-TTTS-EEEEEHHH-S-EEEEEEEEEEE--B--EEEEEEEEE
T ss_pred cCcCCCcccCcceEEEEEEEEccCCccce-eeeEEEEEecCCCcEEEEEccCCCcccHHhhhhhccCCCCCceEEEEEee
Confidence 111110111111 112233343332211111111100000 0122232222 366789999
Q ss_pred eeCCCChhhhHHHHHHHHhccCCCcccceEEeccCCcccccCCCCCCCCCcchhhh
Q psy12983 265 RIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMPDFSTTPLETKDQL 320 (838)
Q Consensus 265 ~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~p~~~~~~~ 320 (838)
+.|+++|+++||++|.+||+++++||+|+|+++||+++.|+|||+|.+|+.+.++.
T Consensus 160 RtG~~~f~~~iR~~L~~~Yg~~~VglGG~F~i~~Gkak~HVMpdFs~~Pl~s~~~v 215 (284)
T PF08925_consen 160 RTGEKNFVTCIRKALEKHYGDKPVGLGGVFLIKNGKAKQHVMPDFSKCPLNSDEDV 215 (284)
T ss_dssp E-SSS-HHHHHHHHHHHHHTTS--EEEEEEEEEESEEEEEE--S--SS---SHHHH
T ss_pred ecCCccHHHHHHHHHHHHcCCCceecceEEEEeCCcEEEEecCCCCCCCcCCHHHH
Confidence 99999999999999999999999999999999999999999999987776655544
No 166
>KOG0327|consensus
Probab=99.40 E-value=2.8e-13 Score=142.65 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=134.0
Q ss_pred HHhcccccCCCc-ccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccc
Q psy12983 89 IVAELTVYPPES-FTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTEC 161 (838)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~ 161 (838)
++||..+-.+.- +.-..|-+++.|||+ .+|.++.. .+..+.+++.| ||+.||++++.+|..++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgr------V~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l--- 197 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGR------VFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQEL--- 197 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchh------HHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHc---
Confidence 567776665554 445569999999999 88888776 55666677666 99999999999999999
Q ss_pred cccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhh
Q psy12983 162 PNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK 241 (838)
Q Consensus 162 ~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~ 241 (838)
|.+.|++|||||+|.++..+++.|++ +|+.|.+ +.+..+.+.++|+|+.+..+.|+..|+.+.+
T Consensus 198 ------------p~~vQv~l~SAT~p~~vl~vt~~f~~-~pv~i~v--kk~~ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 198 ------------PSDVQVVLLSATMPSDVLEVTKKFMR-EPVRILV--KKDELTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred ------------CcchhheeecccCcHHHHHHHHHhcc-CceEEEe--cchhhhhhheeeeeeeccccccccHHHHHHH-
Confidence 89999999999999999999999999 9999765 5566788999999999999889999999998
Q ss_pred CCCCCeeeeHHhh---------hhcCCceeEEeeCCCChhhh
Q psy12983 242 NHIGEIVAWHVLL---------LQVIKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 242 ~~~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~~~~ 274 (838)
.-.+++||+|+. |...++.+..+||++...+.
T Consensus 262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R 302 (397)
T KOG0327|consen 262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNER 302 (397)
T ss_pred -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhh
Confidence 556889997654 46779999999999987754
No 167
>KOG0339|consensus
Probab=99.38 E-value=8.6e-13 Score=142.18 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=119.9
Q ss_pred CCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcC
Q psy12983 98 PESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNL 171 (838)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l 171 (838)
|-+=|-.-|..+++|||| |+|++.-. +..+.++.+|| |+++||+..++.|..++
T Consensus 339 Q~k~Lk~g~EivVaTPgR------lid~VkmK-atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi------------- 398 (731)
T KOG0339|consen 339 QSKELKEGAEIVVATPGR------LIDMVKMK-ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI------------- 398 (731)
T ss_pred HHHhhhcCCeEEEechHH------HHHHHHhh-cccceeeeEEEEechhhhhccccHHHHHHHHhhc-------------
Confidence 334444568899999999 99997443 34567778888 99999999999999999
Q ss_pred CCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHH-hhCCCCCeee
Q psy12983 172 TSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFL-KKNHIGEIVA 249 (838)
Q Consensus 172 ~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll-~~~~~~~~iV 249 (838)
..+|||+|||||++..|+.|++.+|. +|+.+.. ++-....+.|+|.+.+|++ ..|+..|..-| .....+++|+
T Consensus 399 --rpdrQtllFsaTf~~kIe~lard~L~-dpVrvVq--g~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvli 473 (731)
T KOG0339|consen 399 --RPDRQTLLFSATFKKKIEKLARDILS-DPVRVVQ--GEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLI 473 (731)
T ss_pred --CCcceEEEeeccchHHHHHHHHHHhc-CCeeEEE--eehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEE
Confidence 56899999999999999999999999 9999643 3444556779999999987 45776655444 3445678999
Q ss_pred eHH---------hhhhcCCceeEEeeCCCChhhhH
Q psy12983 250 WHV---------LLLQVIKIKVQTRIGKEDFVTSV 275 (838)
Q Consensus 250 F~~---------~~l~~~~~~~~~~hg~~~~~~~~ 275 (838)
|+. ..|...++.|..+||+|+.-+..
T Consensus 474 fVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn 508 (731)
T KOG0339|consen 474 FVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERN 508 (731)
T ss_pred EEeccCCHHHHHHHhccccceeeeecCchhhHHHH
Confidence 953 44566789999999999776654
No 168
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.4e-10 Score=137.32 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred CCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC
Q psy12983 624 CPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV 701 (838)
Q Consensus 624 ~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~ 701 (838)
.....|..++..-+.. ..+.|+||-+.+++..+.+++.|...+++..++++.....+-+-+-+.=+ .-.|-|||++
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNM 685 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNM 685 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccC
Confidence 3345566666665554 37889999999999999999999999998888888755444433333322 3358899999
Q ss_pred CccCCCCC--------CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 702 AARGLDIP--------AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 702 ~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
++||-||. +-=+||--..+.|..--.|..||+||. |.+|.+-+|++-+|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQ-GDPGsS~f~lSLED 742 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQ-GDPGSSQFYVSLED 742 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccC-CCCCcceEEEEccc
Confidence 99999996 334678788888999999999999996 89999999988766
No 169
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.36 E-value=1.5e-12 Score=153.76 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=140.0
Q ss_pred cCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccC
Q psy12983 96 YPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPF 169 (838)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~ 169 (838)
..|..-+...|.++++||++ ++||+.... +.++.++++| ||++||.++++.|+..+
T Consensus 116 ~~q~~~l~~~~~IVVgTPgr------l~d~l~r~~-l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l----------- 177 (629)
T PRK11634 116 DVQLRALRQGPQIVVGTPGR------LLDHLKRGT-LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI----------- 177 (629)
T ss_pred HHHHHHhcCCCCEEEECHHH------HHHHHHcCC-cchhhceEEEeccHHHHhhcccHHHHHHHHHhC-----------
Confidence 34444556789999999999 999986643 4577888888 99999999999998888
Q ss_pred cCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeee
Q psy12983 170 NLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVA 249 (838)
Q Consensus 170 ~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iV 249 (838)
|+.+|++|||||+|+.+..+++.+++ +|..+.+. ........+.|.|+.+...+|...|..++......++||
T Consensus 178 ----p~~~q~llfSAT~p~~i~~i~~~~l~-~~~~i~i~--~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IV 250 (629)
T PRK11634 178 ----PEGHQTALFSATMPEAIRRITRRFMK-EPQEVRIQ--SSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 (629)
T ss_pred ----CCCCeEEEEEccCChhHHHHHHHHcC-CCeEEEcc--CccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEE
Confidence 88999999999999999999999999 99886653 334556679999999998899999999998887889999
Q ss_pred eHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHh-ccCCCcccceEEeccCCc
Q psy12983 250 WHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHY-KDQPVGLGGVILIENAPA 301 (838)
Q Consensus 250 F~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (838)
||++ .|...++.+..+||+++.-+ |......+ ..+.--|+.+.+++-|.+
T Consensus 251 F~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~--R~~il~~Fr~G~~~ILVATdv~arGID 310 (629)
T PRK11634 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQAL--REQTLERLKDGRLDILIATDVAARGLD 310 (629)
T ss_pred EeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHH--HHHHHHHHhCCCCCEEEEcchHhcCCC
Confidence 9755 34667899999999987554 33333333 345555555655555554
No 170
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.35 E-value=2.4e-12 Score=148.50 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=141.1
Q ss_pred hcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccccc
Q psy12983 91 AELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNL 164 (838)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl 164 (838)
||..+..|-.-+..+|+++++|||+ +++|++.. .+.++.++++| |+++||..+++.+...+
T Consensus 109 Gg~~~~~~~~~l~~~~~IvV~Tp~r------l~~~l~~~-~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~------ 175 (460)
T PRK11776 109 GGVPMGPQIDSLEHGAHIIVGTPGR------ILDHLRKG-TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA------ 175 (460)
T ss_pred CCCChHHHHHHhcCCCCEEEEChHH------HHHHHHcC-CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC------
Confidence 3444444444556789999999999 89998763 34678888888 99999999999998888
Q ss_pred ccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCC
Q psy12983 165 TSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHI 244 (838)
Q Consensus 165 ~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~ 244 (838)
|..+|+++||||+|+.+..++..+++ +|..+.+... .....++|+|+.++..+|...|..++....+
T Consensus 176 ---------~~~~q~ll~SAT~~~~~~~l~~~~~~-~~~~i~~~~~---~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 242 (460)
T PRK11776 176 ---------PARRQTLLFSATYPEGIAAISQRFQR-DPVEVKVEST---HDLPAIEQRFYEVSPDERLPALQRLLLHHQP 242 (460)
T ss_pred ---------CcccEEEEEEecCcHHHHHHHHHhcC-CCEEEEECcC---CCCCCeeEEEEEeCcHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999 9998766432 2345699999999998999999999998888
Q ss_pred CCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCc
Q psy12983 245 GEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPA 301 (838)
Q Consensus 245 ~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (838)
+++||||++ .|...++.+..+||+++..+. +.....+. ++.--+..+.+.+.|.+
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR--~~~l~~F~~g~~~vLVaTdv~~rGiD 307 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR--DQVLVRFANRSCSVLVATDVAARGLD 307 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH--HHHHHHHHcCCCcEEEEecccccccc
Confidence 899999754 446678999999999987643 33333333 44444555555555554
No 171
>KOG0347|consensus
Probab=99.35 E-value=4.5e-14 Score=153.47 Aligned_cols=181 Identities=22% Similarity=0.316 Sum_probs=143.7
Q ss_pred HHHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCC--ccccccchhe------eeccccccccccceEeec
Q psy12983 88 RIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPL--LVSVSIFCPF------VLNQGLGKYFKEVSVSFT 159 (838)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~lv------~l~~g~~~~~~~i~~~~~ 159 (838)
.|+|||.|--||-++-..|++++||||| ++..++.... ..++.++||| |++.|+.+.|..++..+.
T Consensus 296 si~GGLavqKQqRlL~~~p~IVVATPGR------lweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~ 369 (731)
T KOG0347|consen 296 SITGGLAVQKQQRLLNQRPDIVVATPGR------LWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLN 369 (731)
T ss_pred EeechhHHHHHHHHHhcCCCEEEecchH------HHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhh
Confidence 3799999999999999999999999999 9999855443 4688999999 999999999999999996
Q ss_pred cccccccccCcCCCCCCceEEEEEEeCCh---------------------HHHHHHH-HhccCCCEEEEEecCCcccccc
Q psy12983 160 ECPNLTSHPFNLTSAERRQTMLFSATTTA---------------------KTETLTK-LALKKEPVYIGVDDTKEEATVA 217 (838)
Q Consensus 160 d~~dl~~i~~~l~~p~~rQtlLFSAT~~~---------------------~v~~la~-~~l~~~p~~i~i~~~~~~~~~~ 217 (838)
|.+ ...+|||+.||||++- .++.|.+ ..++.+|.+|++ ++..++.+
T Consensus 370 e~~----------~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~--t~q~~ta~ 437 (731)
T KOG0347|consen 370 EEQ----------KNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDL--TPQSATAS 437 (731)
T ss_pred hhh----------cccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEec--CcchhHHH
Confidence 432 1347999999999882 2333332 233436788655 66778888
Q ss_pred cceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCC
Q psy12983 218 GLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPV 288 (838)
Q Consensus 218 ~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~ 288 (838)
.+....+.|+..+|..+|+++|..+ ||++|||||. .|+.+++....||..|..-+.++.. +.+...|.
T Consensus 438 ~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknL--EkF~~~~~ 514 (731)
T KOG0347|consen 438 TLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNL--EKFKQSPS 514 (731)
T ss_pred HHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhH--HHHhcCCC
Confidence 8999999999999999999988775 5889999765 4578899999999999998888754 33444443
Q ss_pred c
Q psy12983 289 G 289 (838)
Q Consensus 289 ~ 289 (838)
|
T Consensus 515 ~ 515 (731)
T KOG0347|consen 515 G 515 (731)
T ss_pred e
Confidence 3
No 172
>KOG0337|consensus
Probab=99.35 E-value=5.8e-13 Score=140.94 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=126.8
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
+|||-...-|=+-+-.|||+++|+||+ +++.. ..-...++.++|.| +++|||.+.+.+++..+
T Consensus 124 ~~ggD~~eeqf~~l~~npDii~ATpgr------~~h~~-vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl---- 192 (529)
T KOG0337|consen 124 LVGGDSIEEQFILLNENPDIIIATPGR------LLHLG-VEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL---- 192 (529)
T ss_pred hcccchHHHHHHHhccCCCEEEecCce------eeeee-hheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhC----
Confidence 566655555555566699999999999 44443 22236788999998 99999999999999999
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 242 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~ 242 (838)
|..+||+|||||+|..+-++++.-+. +|+.+.+++ +....+.++..+..|.+++|..+|..++...
T Consensus 193 -----------~~~~QTllfSatlp~~lv~fakaGl~-~p~lVRldv--etkise~lk~~f~~~~~a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 193 -----------PESRQTLLFSATLPRDLVDFAKAGLV-PPVLVRLDV--ETKISELLKVRFFRVRKAEKEAALLSILGGR 258 (529)
T ss_pred -----------CCcceEEEEeccCchhhHHHHHccCC-CCceEEeeh--hhhcchhhhhheeeeccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 999987765 4466777899999999999999999998754
Q ss_pred C-CCCeeeeHHhh---------hhcCCceeEEeeCCCCh
Q psy12983 243 H-IGEIVAWHVLL---------LQVIKIKVQTRIGKEDF 271 (838)
Q Consensus 243 ~-~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~ 271 (838)
. +++++||+++. ++..|+.+..+.|.++.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~ 297 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQ 297 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccCh
Confidence 3 46799996553 45567777777777654
No 173
>KOG0335|consensus
Probab=99.34 E-value=3.7e-12 Score=140.01 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=143.5
Q ss_pred hcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccc
Q psy12983 91 AELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPN 163 (838)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~d 163 (838)
||-++-.|-..+-+-=+++++|||+ |.|.++... +.++.++|+| ||| |||..++.+|....
T Consensus 188 gg~~~~~q~~~~~~gcdIlvaTpGr------L~d~~e~g~-i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~----- 255 (482)
T KOG0335|consen 188 GGTDLGAQLRFIKRGCDILVATPGR------LKDLIERGK-ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQL----- 255 (482)
T ss_pred CCcchhhhhhhhccCccEEEecCch------hhhhhhcce-eehhhCcEEEecchHHhhhhccccccHHHHhccc-----
Confidence 4555556666666777899999999 888876654 6889999999 999 99999999998887
Q ss_pred cccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCC
Q psy12983 164 LTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNH 243 (838)
Q Consensus 164 l~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~ 243 (838)
.++....+||+|||||+|.+++.++..|+..++.++.+ +.-..+.+++.|..+.|.+.+|...|..++....
T Consensus 256 ------~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV--~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~ 327 (482)
T KOG0335|consen 256 ------GMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV--GRVGSTSENITQKILFVNEMEKRSKLLDLLNKDD 327 (482)
T ss_pred ------CCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE--eeeccccccceeEeeeecchhhHHHHHHHhhccc
Confidence 22224589999999999999999999999833777554 4455778889999999999999888888887433
Q ss_pred ----CC-----CeeeeH---------HhhhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcccceEEeccCCccc
Q psy12983 244 ----IG-----EIVAWH---------VLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKH 303 (838)
Q Consensus 244 ----~~-----~~iVF~---------~~~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (838)
.+ +++||| ...+...++++..+||+.+..+.-+ ++...--.+...|+.+.|-.-|-.+.
T Consensus 328 ~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~-al~~Fr~g~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 328 GPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ-ALNDFRNGKAPVLVATNVAARGLDIP 404 (482)
T ss_pred CCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH-HHHHhhcCCcceEEEehhhhcCCCCC
Confidence 23 689995 4455778999999999987665433 22222334555666665554454444
No 174
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.28 E-value=5.7e-12 Score=147.96 Aligned_cols=187 Identities=16% Similarity=0.122 Sum_probs=143.8
Q ss_pred HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccc
Q psy12983 90 VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPN 163 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~d 163 (838)
.||.+...|...+..+|+++++||++ +++++.+...+.+..++++| |++.||..++..++..+
T Consensus 119 ~Gg~~~~~q~~~l~~~~dIiV~TP~r------L~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~l----- 187 (572)
T PRK04537 119 YGGVDYDKQRELLQQGVDVIIATPGR------LIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM----- 187 (572)
T ss_pred ECCCCHHHHHHHHhCCCCEEEECHHH------HHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhc-----
Confidence 45666666667777889999999999 99998876667788888887 88889998888887776
Q ss_pred cccccCcCCCCC--CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhh
Q psy12983 164 LTSHPFNLTSAE--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK 241 (838)
Q Consensus 164 l~~i~~~l~~p~--~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~ 241 (838)
|. .+|+++||||++..+..++..++. +|..+.+. ........+.|.++.+...+|...|..+++.
T Consensus 188 ----------p~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~--~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~ 254 (572)
T PRK04537 188 ----------PERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVE--TETITAARVRQRIYFPADEEKQTLLLGLLSR 254 (572)
T ss_pred ----------ccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEec--cccccccceeEEEEecCHHHHHHHHHHHHhc
Confidence 54 689999999999999999999998 88775443 2334566789999999888999999999988
Q ss_pred CCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCcc
Q psy12983 242 NHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPAK 302 (838)
Q Consensus 242 ~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (838)
....++||||++ .|...++.+..+||+++..+. +.+.+.+. ++.--|+.+.+.+-|.+.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR--~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR--ESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH--HHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 777899999654 346678999999999887653 33444443 444445555555555543
No 175
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=7.7e-10 Score=133.73 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
|+|..++|.|.+.+..+. ++++.++.+|||+|||++.+-|++...... ....+++|.+.|..=..|..++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~----~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK----PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc----cccccEEEEcccchHHHHHHHHHH
Confidence 788888999999887765 578999999999999999999999876531 233689999999999999999998
Q ss_pred HH
Q psy12983 490 EL 491 (838)
Q Consensus 490 ~~ 491 (838)
..
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 176
>KOG0336|consensus
Probab=99.25 E-value=1.1e-11 Score=130.41 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=115.2
Q ss_pred cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 102 TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
+..-=++++++||| +-|+. .....++.++-||| ||||||+..+..|+-.+ ..
T Consensus 340 lkrgveiiiatPgr------lndL~-~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi---------------RP 397 (629)
T KOG0336|consen 340 LKRGVEIIIATPGR------LNDLQ-MDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDI---------------RP 397 (629)
T ss_pred HhcCceEEeeCCch------Hhhhh-hcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhc---------------CC
Confidence 33445678888998 66653 33446788999999 99999999999888777 45
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC-CCCCeeeeHHhh
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN-HIGEIVAWHVLL 254 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~-~~~~~iVF~~~~ 254 (838)
+|||+|-|||+|+.|++|+..|++ +|..+-+.. -+-.....++|.+++..+.+|+..+..++... ...++||||..+
T Consensus 398 DRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGs-LdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 398 DRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGS-LDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred cceeeeecccCchHHHHHHHHhhh-CceEEEecc-cceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 899999999999999999999999 998854422 12344566999998888888998888887744 557899997554
Q ss_pred h---------hcCCceeEEeeCCCChhh
Q psy12983 255 L---------QVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 255 l---------~~~~~~~~~~hg~~~~~~ 273 (838)
. ...|+.++.|||+.+...
T Consensus 476 ~~AD~LSSd~~l~gi~~q~lHG~r~Q~D 503 (629)
T KOG0336|consen 476 VMADHLSSDFCLKGISSQSLHGNREQSD 503 (629)
T ss_pred hhhhhccchhhhcccchhhccCChhhhh
Confidence 3 445889999999876553
No 177
>KOG0332|consensus
Probab=99.24 E-value=1.3e-11 Score=129.07 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=117.6
Q ss_pred CeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCCCceE
Q psy12983 107 SKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQT 179 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQt 179 (838)
-+++.+||. .+|.+..-....+.+++++| |++ .||.++--.|.+.+ |+..|.
T Consensus 209 qIviGTPGt------v~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l---------------P~~~Ql 267 (477)
T KOG0332|consen 209 QIVIGTPGT------VLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL---------------PRNQQL 267 (477)
T ss_pred heeeCCCcc------HHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc---------------CCcceE
Confidence 356777777 77776665556777888777 554 69999998998888 889999
Q ss_pred EEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHhh----
Q psy12983 180 MLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVLL---- 254 (838)
Q Consensus 180 lLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~~---- 254 (838)
+|||||+.+.|.+++...++ ||..+.+ ..+.....+|+|+|+.|+. ++|+..|..+......+++||||.+.
T Consensus 268 lLFSATf~e~V~~Fa~kivp-n~n~i~L--k~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~ 344 (477)
T KOG0332|consen 268 LLFSATFVEKVAAFALKIVP-NANVIIL--KREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAM 344 (477)
T ss_pred EeeechhHHHHHHHHHHhcC-CCceeee--ehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHH
Confidence 99999999999999999999 8877555 4456777889999999987 67999999988888889999997554
Q ss_pred -----hhcCCceeEEeeCCCChhh
Q psy12983 255 -----LQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 255 -----l~~~~~~~~~~hg~~~~~~ 273 (838)
+...|+.|..+||++.-.+
T Consensus 345 ~l~~~m~~~Gh~V~~l~G~l~~~~ 368 (477)
T KOG0332|consen 345 WLYEEMRAEGHQVSLLHGDLTVEQ 368 (477)
T ss_pred HHHHHHHhcCceeEEeeccchhHH
Confidence 4678999999999986543
No 178
>PTZ00110 helicase; Provisional
Probab=99.18 E-value=4.9e-11 Score=139.57 Aligned_cols=184 Identities=14% Similarity=0.112 Sum_probs=133.9
Q ss_pred hcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccccc
Q psy12983 91 AELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNL 164 (838)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl 164 (838)
||.+...|..-+...++++++|||+ ++|++.+.. ..+..++++| |+++||..++..|...+
T Consensus 239 gg~~~~~q~~~l~~~~~IlVaTPgr------L~d~l~~~~-~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~------ 305 (545)
T PTZ00110 239 GGVPKRGQIYALRRGVEILIACPGR------LIDFLESNV-TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI------ 305 (545)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHH------HHHHHHcCC-CChhhCcEEEeehHHhhhhcchHHHHHHHHHhC------
Confidence 4444444545566778999999999 888886643 4577888888 99999999988887777
Q ss_pred ccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC--
Q psy12983 165 TSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN-- 242 (838)
Q Consensus 165 ~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~-- 242 (838)
+..+|+++||||+|.+++.+++.++..+|+.+.+... ......+++|.+..+++.+|...|..++...
T Consensus 306 ---------~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~ 375 (545)
T PTZ00110 306 ---------RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR 375 (545)
T ss_pred ---------CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHHHHHHHhcc
Confidence 6689999999999999999999988646888665321 2234467999999998888998888888764
Q ss_pred CCCCeeeeHHhh---------hhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccC
Q psy12983 243 HIGEIVAWHVLL---------LQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENA 299 (838)
Q Consensus 243 ~~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (838)
...++||||++. |...++.+..+||+++..+ |..+.+.+. ++..-|+.+.+.+-|
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~e--R~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEE--RTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHH--HHHHHHHHhcCCCcEEEEcchhhcC
Confidence 456899997543 4567899999999987654 333333333 333334444444433
No 179
>KOG0329|consensus
Probab=99.18 E-value=3.1e-12 Score=126.98 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=120.7
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTEC 161 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~ 161 (838)
..||+.+|-.|-.+-..|-++++|||| ++.+.++. .+.+++++..| ||+ .....|+++|....
T Consensus 145 FfGG~~Ikkdee~lk~~PhivVgTPGr------ilALvr~k-~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t--- 214 (387)
T KOG0329|consen 145 FFGGLFIKKDEELLKNCPHIVVGTPGR------ILALVRNR-SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT--- 214 (387)
T ss_pred EEcceeccccHHHHhCCCeEEEcCcHH------HHHHHHhc-cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC---
Confidence 369999999999999999999999999 88888775 35778887666 333 35556777777666
Q ss_pred cccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhh
Q psy12983 162 PNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK 241 (838)
Q Consensus 162 ~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~ 241 (838)
|.++|.|+||||++++++...+.||. +|..|-++++ ...+..++.|+|+...+.+|-.-|..+|..
T Consensus 215 ------------p~~KQvmmfsatlskeiRpvC~kFmQ-dPmEi~vDdE-~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 215 ------------PHEKQVMMFSATLSKEIRPVCHKFMQ-DPMEIFVDDE-AKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred ------------cccceeeeeeeecchhhHHHHHhhhc-Cchhhhccch-hhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 89999999999999999999999999 9988767543 345667899999999999999999999998
Q ss_pred CCCCCeeeeHHhhhh
Q psy12983 242 NHIGEIVAWHVLLLQ 256 (838)
Q Consensus 242 ~~~~~~iVF~~~~l~ 256 (838)
....+++||+.+.-+
T Consensus 281 LeFNQVvIFvKsv~R 295 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQR 295 (387)
T ss_pred hhhcceeEeeehhhh
Confidence 889999999866544
No 180
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.18 E-value=7.3e-11 Score=135.24 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=140.7
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
+.||.....++..+..+|+++++|||+ +++++.+. .+.+..+.++| |+++||..+++.+...+
T Consensus 107 ~~gg~~~~~~~~~l~~~~~IlV~Tp~r------l~~~~~~~-~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~---- 175 (434)
T PRK11192 107 ITGGVAYMNHAEVFSENQDIVVATPGR------LLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIETIAAET---- 175 (434)
T ss_pred EECCCCHHHHHHHhcCCCCEEEEChHH------HHHHHHcC-CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC----
Confidence 357777778888888999999999999 88887653 35677788887 88999999998887766
Q ss_pred ccccccCcCCCCCCceEEEEEEeCCh-HHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHh
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTA-KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLK 240 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~-~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~ 240 (838)
+..+|+++||||++. .+..++..++. +|..+.+. .......++.|+++.++. ..|..+|..+++
T Consensus 176 -----------~~~~q~~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~--~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 176 -----------RWRKQTLLFSATLEGDAVQDFAERLLN-DPVEVEAE--PSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred -----------ccccEEEEEEeecCHHHHHHHHHHHcc-CCEEEEec--CCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 667899999999985 68999999998 89886553 334455678999988875 678999999998
Q ss_pred hCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCc
Q psy12983 241 KNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPA 301 (838)
Q Consensus 241 ~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (838)
.....++||||++ .|...++.+..+||+++..+.- .....+. ++..-++.+.+...|.+
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~--~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRN--EAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHH--HHHHHHhCCCCcEEEEccccccCcc
Confidence 7777899999654 3466789999999998766543 2333333 44444444545554544
No 181
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.18 E-value=5.6e-11 Score=136.73 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=137.2
Q ss_pred HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccc
Q psy12983 90 VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPN 163 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~d 163 (838)
.||.....+...+...|+++++||++ +++++.... +.++.++++| |++.||..++..++..+
T Consensus 110 ~gg~~~~~~~~~l~~~~~IiV~TP~r------L~~~~~~~~-~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l----- 177 (456)
T PRK10590 110 FGGVSINPQMMKLRGGVDVLVATPGR------LLDLEHQNA-VKLDQVEILVLDEADRMLDMGFIHDIRRVLAKL----- 177 (456)
T ss_pred ECCcCHHHHHHHHcCCCcEEEEChHH------HHHHHHcCC-cccccceEEEeecHHHHhccccHHHHHHHHHhC-----
Confidence 34555555555566789999999999 888765443 4677888888 88889988888887777
Q ss_pred cccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCC
Q psy12983 164 LTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNH 243 (838)
Q Consensus 164 l~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~ 243 (838)
|..+|+++||||+++++..++..++. +|..+.+. ......+.+.|++..++...|..+|..++....
T Consensus 178 ----------~~~~q~l~~SAT~~~~~~~l~~~~~~-~~~~i~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~ 244 (456)
T PRK10590 178 ----------PAKRQNLLFSATFSDDIKALAEKLLH-NPLEIEVA--RRNTASEQVTQHVHFVDKKRKRELLSQMIGKGN 244 (456)
T ss_pred ----------CccCeEEEEeCCCcHHHHHHHHHHcC-CCeEEEEe--cccccccceeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999998 89886553 233455679999999999889999999998888
Q ss_pred CCCeeeeHHhh---------hhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCc
Q psy12983 244 IGEIVAWHVLL---------LQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPA 301 (838)
Q Consensus 244 ~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (838)
..++||||++. |...++.+..+||+++.-+..+ ....+. ++.--|+.+.+.+-|.+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~--~l~~F~~g~~~iLVaTdv~~rGiD 310 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR--ALADFKSGDIRVLVATDIAARGLD 310 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH--HHHHHHcCCCcEEEEccHHhcCCC
Confidence 88999996553 4567899999999988754432 223233 33333344444444443
No 182
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.16 E-value=6.9e-10 Score=129.07 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=177.6
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
.-.+|.+|+|||||.+...++-+.+. ....++++|...++|+.+..+.++...-. +.. .+.+.... .
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~---~ 116 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY---I 116 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc---c
Confidence 44689999999999876555544332 35788999999999999999888764221 111 11111100 0
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHH-------HHHHHHHCCccceEEEEeeeccc
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEED-------MKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~-------~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.-....+-+++..+.|.+... ..++++++|||||+-.....-|.+. +..+...++....+|+|-|++..
T Consensus 117 i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 117 IDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred ccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 001134677777777755422 2356789999999986555433222 22234455667889999999999
Q ss_pred chHHHHHHHccCCCeEEEecCccccccccceeeEE----------------------------------EECCchhHHHH
Q psy12983 587 KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGY----------------------------------VVCPSEKRFLL 632 (838)
Q Consensus 587 ~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~----------------------------------~~~~~~~k~~~ 632 (838)
..-++....-..+.+.+.+..... ....+-.-.+ ......+....
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~-~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYAS-PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeec-CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 888887765433333333221100 0000000000 00000011111
Q ss_pred HHHHHH-hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc
Q psy12983 633 LFTFLK-KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV 711 (838)
Q Consensus 633 l~~~l~-~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v 711 (838)
.-.++. ...++++-||++|...++.+++..+.....+..++|.-+..+.+ . -++++|++-|+++..|+++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchh
Confidence 122222 23577888999999999999999998888899998876655221 1 3678999999999999999654
Q ss_pred cE--EEEeCCC----CCHHHHHHHhcccCcCCCCccEEEEEeccC
Q psy12983 712 DW--IVQYDPP----DDPKEYIHRVGRTARGEGSSGHALLILRPE 750 (838)
Q Consensus 712 ~~--VI~~d~p----~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~ 750 (838)
.+ +.-|=-| .+..+..|++||+-.- .....+++++..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l--~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL--LDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhh--ccCeEEEEEecc
Confidence 33 3333222 3566789999998663 445666666654
No 183
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.14 E-value=1.2e-10 Score=132.90 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=132.7
Q ss_pred ccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCC
Q psy12983 101 FTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSA 174 (838)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p 174 (838)
.+-.+|+++++||++ +++++++. .+.++.++++| +++.||..+++.+...+ +.+
T Consensus 129 ~l~~~~~IlV~TP~~------l~~~l~~~-~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~-------------~~~ 188 (423)
T PRK04837 129 VLESGVDILIGTTGR------LIDYAKQN-HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRM-------------PPA 188 (423)
T ss_pred HhcCCCCEEEECHHH------HHHHHHcC-CcccccccEEEEecHHHHhhcccHHHHHHHHHhC-------------CCc
Confidence 445679999999999 88888653 35678888888 88889988888777666 112
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh-
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~- 253 (838)
..+|+++||||++..+..++..++. +|..+.+. ........+.|.++.+...+|...|..++......++||||++
T Consensus 189 ~~~~~~l~SAT~~~~~~~~~~~~~~-~p~~i~v~--~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~ 265 (423)
T PRK04837 189 NQRLNMLFSATLSYRVRELAFEHMN-NPEYVEVE--PEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK 265 (423)
T ss_pred cceeEEEEeccCCHHHHHHHHHHCC-CCEEEEEc--CCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 4688999999999999999999999 89887653 3344556788988888888899999999988778899999654
Q ss_pred --------hhhcCCceeEEeeCCCChhhhHHHHHHHHh-ccCCCcccceEEeccCCcc
Q psy12983 254 --------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHY-KDQPVGLGGVILIENAPAK 302 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 302 (838)
.|...++.+..+||+++.-+ |....+.+ .++.--|..+.+..-|.+.
T Consensus 266 ~~~~~l~~~L~~~g~~v~~lhg~~~~~~--R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 266 HRCEEIWGHLAADGHRVGLLTGDVAQKK--RLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCChhH--HHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 34567999999999987655 33333333 3444445555444444443
No 184
>KOG4439|consensus
Probab=99.10 E-value=2.5e-09 Score=120.07 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhc--CCceE-EEEccCCccCCCCCCccEEEEe
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCN--AETGI-LLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~--g~~~V-LVaT~~~~~GiDip~v~~VI~~ 717 (838)
...+++|...-.....-+...|++.|.....+||.....+|..+++.|.. |..+| |++-.+.+.|+|+-..+++|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45567776666666677778899999999999999999999999999974 44555 5667889999999999999999
Q ss_pred CCCCCHHHHHHHhcccCcCCCCccEEEE
Q psy12983 718 DPPDDPKEYIHRVGRTARGEGSSGHALL 745 (838)
Q Consensus 718 d~p~s~~~y~Qr~GRagR~~g~~g~~i~ 745 (838)
|+-+++.-=.|...|..|. |++..+++
T Consensus 825 DlHWNPaLEqQAcDRIYR~-GQkK~V~I 851 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRM-GQKKDVFI 851 (901)
T ss_pred ecccCHHHHHHHHHHHHHh-cccCceEE
Confidence 9999999999999999997 56555444
No 185
>KOG1002|consensus
Probab=99.09 E-value=7.5e-09 Score=111.79 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=93.4
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC-CceE-EEEccCCccCCCCCCccEEEEe
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA-ETGI-LLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~V-LVaT~~~~~GiDip~v~~VI~~ 717 (838)
.+.-+.|||.......+.+.-.|.+.|+.+..+.|+|++..|...++.|++. .++| ||+-.+.+..+|+..+..|+.+
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 3556789999888888888889999999999999999999999999999986 4554 6777888889999999999999
Q ss_pred CCCCCHHHHHHHhcccCcCC-CCccEEEEEeccCc
Q psy12983 718 DPPDDPKEYIHRVGRTARGE-GSSGHALLILRPEE 751 (838)
Q Consensus 718 d~p~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~e 751 (838)
|+.++++--.|...|..|-| -++-.++-|+-++.
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999899888888853 24445666655543
No 186
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.08 E-value=3.8e-08 Score=109.44 Aligned_cols=292 Identities=20% Similarity=0.259 Sum_probs=196.2
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHhhhc-C--------CeEE----------EEeCCcchHHHHHHH-h----------
Q psy12983 467 NGTGIIIISPTRELSMQTFGVLKELMKYH-H--------HTYG----------LIMGGASRQAEAQKL-A---------- 516 (838)
Q Consensus 467 ~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~-~--------~~v~----------~l~gg~~~~~~~~~l-~---------- 516 (838)
..++||||+|+|.-|.++.+.+-++.... . -..+ .-........++..+ .
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 35789999999999999998887775431 0 0000 000000111122221 1
Q ss_pred --------------cCCcEEEcChHHHHHHHhcC----c-ccccCCceEEEEeCCCcccc--cCcHHHHHHHHHHCCc--
Q psy12983 517 --------------KGINIIVATPGRLLDHLQNT----P-EFLYKNLQCLIIDEADRILD--IGFEEDMKQIVNLLPK-- 573 (838)
Q Consensus 517 --------------~~~~IvV~Tp~~l~~~l~~~----~-~~~~~~l~lvViDEah~l~~--~gf~~~~~~il~~l~~-- 573 (838)
.+.|||||+|=-|...+... . ...++++.++|+|.||.+.- |.....+...++..|+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 13799999999888777641 1 22468999999999997653 4333334444444443
Q ss_pred -------------------cceEEEEeeecccchHHHHHHHccCCCeEEEecCccc-----cccccceeeEEEECC--c-
Q psy12983 574 -------------------RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKE-----EATVAGLEQGYVVCP--S- 626 (838)
Q Consensus 574 -------------------~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~-----~~~~~~l~~~~~~~~--~- 626 (838)
-+|.+++|+...+....+......+..-.+.+..... ......+.|.+...+ +
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 2599999999999888887775544333333322222 233344556555432 1
Q ss_pred ----hhHHHH----HHHHHH-hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEE
Q psy12983 627 ----EKRFLL----LFTFLK-KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILL 697 (838)
Q Consensus 627 ----~~k~~~----l~~~l~-~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLV 697 (838)
+.+... ++..+. ....+.+|||+++.-+--++.+.|++.++..+.+|--.+..+..+.-..|.+|+..+|+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 223222 222333 44567899999999999999999999999999999999999999999999999999999
Q ss_pred Ecc--CCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCC-----CCccEEEEEeccCchHHHHHH
Q psy12983 698 CTD--VAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGE-----GSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 698 aT~--~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~-----g~~g~~i~l~~~~e~~~~~~l 758 (838)
.|. -.=+=..+.+++.||.|.+|..+.-|...+...+... .....+.++++.-|.-.++.+
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 995 2334567889999999999998888877776555431 134688888888776555444
No 187
>KOG0334|consensus
Probab=99.07 E-value=1.4e-10 Score=136.22 Aligned_cols=178 Identities=20% Similarity=0.185 Sum_probs=142.0
Q ss_pred HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCC--ccccccchhe------eeccccccccccceEeeccc
Q psy12983 90 VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPL--LVSVSIFCPF------VLNQGLGKYFKEVSVSFTEC 161 (838)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~ 161 (838)
+||-++.-|=+.+..-=.+++.+||+ ++|.+-...+ .++..+-++| |++|||..+.-.|+..+
T Consensus 473 ygg~~~~~qiaelkRg~eIvV~tpGR------miD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl--- 543 (997)
T KOG0334|consen 473 YGGSGISQQIAELKRGAEIVVCTPGR------MIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL--- 543 (997)
T ss_pred cCCccHHHHHHHHhcCCceEEeccch------hhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc---
Confidence 57888877777777778889999999 8888644333 3455556888 88999998876677777
Q ss_pred cccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECC-cchHHHHHHHHHh
Q psy12983 162 PNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP-SEKRFLLLFTFLK 240 (838)
Q Consensus 162 ~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~-~~~K~~~L~~ll~ 240 (838)
+..|||.|||||+|..+..+|...++ .|+.|.+ +........|.|.+.+|+ ++.|+.-|..+|.
T Consensus 544 ------------rpdrQtvlfSatfpr~m~~la~~vl~-~Pveiiv--~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~ 608 (997)
T KOG0334|consen 544 ------------RPDRQTVLFSATFPRSMEALARKVLK-KPVEIIV--GGRSVVCKEVTQVVRVCAIENEKFLKLLELLG 608 (997)
T ss_pred ------------chhhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEE--ccceeEeccceEEEEEecCchHHHHHHHHHHH
Confidence 67899999999999999999999999 8998655 456677888999999999 7899999998887
Q ss_pred h-CCCCCeeeeH---------HhhhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcccce
Q psy12983 241 K-NHIGEIVAWH---------VLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGV 293 (838)
Q Consensus 241 ~-~~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (838)
+ ...+++|||| ...|...++.|..+||..++ ..|....+-+.+...+|...
T Consensus 609 e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q--~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 609 ERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQ--HDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred HHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCch--HHHHhHHHHHhccCceEEEe
Confidence 4 3467999995 34456779999999999988 66666666676666665444
No 188
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.07 E-value=2.9e-10 Score=132.64 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=116.1
Q ss_pred cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 102 TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
+...++++++|||+ +++++... ...++.+.++| |+++||.+++..+...+ |
T Consensus 243 l~~~~~IiV~TPgr------L~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l---------------~- 299 (518)
T PLN00206 243 IQQGVELIVGTPGR------LIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL---------------S- 299 (518)
T ss_pred hcCCCCEEEECHHH------HHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhC---------------C-
Confidence 45678999999999 88887654 45678888888 88899998888877666 3
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCC--CCCeeeeHHh
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNH--IGEIVAWHVL 253 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~--~~~~iVF~~~ 253 (838)
.+|+++||||++++++.++..+++ ++..+.+. ........+.|.++.++..+|...|..++.... ..++|||+++
T Consensus 300 ~~q~l~~SATl~~~v~~l~~~~~~-~~~~i~~~--~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 300 QPQVLLFSATVSPEVEKFASSLAK-DIILISIG--NPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred CCcEEEEEeeCCHHHHHHHHHhCC-CCEEEEeC--CCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCC
Confidence 579999999999999999999998 89886653 334455668999999998888888888886432 3579999765
Q ss_pred hh---------h-cCCceeEEeeCCCChhh
Q psy12983 254 LL---------Q-VIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 254 ~l---------~-~~~~~~~~~hg~~~~~~ 273 (838)
.. . ..++.+..+||+++..+
T Consensus 377 ~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 377 RLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred chhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 43 2 35889999999997764
No 189
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.06 E-value=2.8e-08 Score=122.52 Aligned_cols=296 Identities=20% Similarity=0.164 Sum_probs=168.7
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
+..+|+--||||||++.+..+-.++.. ...+.++||+-+++|-.|..+.+..+........ ...+..+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHH
Confidence 469999999999999876666555433 4678899999999999999999999876543322 3445555556
Q ss_pred HHhcC-CcEEEcChHHHHHHHhcCccc-ccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 514 KLAKG-INIIVATPGRLLDHLQNTPEF-LYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 514 ~l~~~-~~IvV~Tp~~l~~~l~~~~~~-~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
.+.++ ..|||+|..+|.......... .-++==+||+|||||-- ++.....+...++ +...++||+||.-....-
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcccccccc
Confidence 66644 489999999997766554111 11222479999999932 3344444444444 478999999987533222
Q ss_pred H-HHHccCCCeE-EEe-cCccccccccceeeEEEEC-C------------------------------------------
Q psy12983 592 T-KLALKKEPVY-IGV-DDTKEEATVAGLEQGYVVC-P------------------------------------------ 625 (838)
Q Consensus 592 ~-~~~l~~~~~~-i~~-~~~~~~~~~~~l~~~~~~~-~------------------------------------------ 625 (838)
. .... ..... ..+ +........ ...|... .
T Consensus 421 tt~~~f-g~ylh~Y~i~daI~Dg~vl---~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 496 (962)
T COG0610 421 TTKDVF-GDYLHTYTITDAIRDGAVL---PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAM 496 (962)
T ss_pred chhhhh-cceeEEEecchhhccCcee---eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhc
Confidence 1 1111 01111 001 000000000 0000000 0
Q ss_pred chhHH----HHHHHHHH--hcCCCeEEEEecchhhHHHHHHHhhcC-----------C----------C--CeEEecCCC
Q psy12983 626 SEKRF----LLLFTFLK--KNRKKKVMVFFSSCMSVKFHHELLNYI-----------D----------L--PVMCIHGKQ 676 (838)
Q Consensus 626 ~~~k~----~~l~~~l~--~~~~~kvIIF~~t~~~~~~l~~~L~~~-----------~----------~--~v~~lhg~m 676 (838)
...+. ..++.... .....++.+.+.+++-+..+++..... + . .....|...
T Consensus 497 ~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 576 (962)
T COG0610 497 LAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL 576 (962)
T ss_pred chHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH
Confidence 00000 00111111 224557777777777444444333221 0 0 000011222
Q ss_pred ChhHHHHHHHHH--hcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCC---ccEEEEEec
Q psy12983 677 KQMKRTTTFFQF--CNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGS---SGHALLILR 748 (838)
Q Consensus 677 ~~~~R~~i~~~F--~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~---~g~~i~l~~ 748 (838)
...+.....+| .+...++||.++++-+|.|-|.++++. .|-|.-.-.++|.+-|++|..+. .|..+-|..
T Consensus 577 -~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 577 -KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred -HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 22233344443 456789999999999999999999887 45567677889999999995333 344444443
No 190
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.02 E-value=1.7e-08 Score=126.26 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=98.0
Q ss_pred hHHHHHHHHH-Hh--cCCC--eEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC--CceEEEEcc
Q psy12983 628 KRFLLLFTFL-KK--NRKK--KVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA--ETGILLCTD 700 (838)
Q Consensus 628 ~k~~~l~~~l-~~--~~~~--kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g--~~~VLVaT~ 700 (838)
.|...+..++ .. ..+. ++++|.........+...+...++....++|+++..+|...+++|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4555565666 22 2344 899999999999999999999988899999999999999999999986 445677888
Q ss_pred CCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEE
Q psy12983 701 VAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHA 743 (838)
Q Consensus 701 ~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~ 743 (838)
+.+.|+|+-.+++||+||..+++....|...|+.|. |++..+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri-gQ~~~v 813 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI-GQKRPV 813 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHh-cCccee
Confidence 999999999999999999999999999999999996 555443
No 191
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.97 E-value=4.1e-08 Score=115.25 Aligned_cols=318 Identities=20% Similarity=0.272 Sum_probs=192.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|. .+..+|.- -.+.-...-+..+-||-|||+++.+|+.-.-+ .|+.+.++.-.--||.--.+++..+..
T Consensus 77 lg~-~~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-------~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 77 LGM-RHFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-------AGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred cCC-ChhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhc-------CCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 455 45555554 44444456689999999999999999875432 477789999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcC----c-ccccCCceEEEEeCCCcccc----------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNT----P-EFLYKNLQCLIIDEADRILD---------- 557 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~----~-~~~~~~l~lvViDEah~l~~---------- 557 (838)
+.+.+++....+.+..+..... .+||.++|-..| .++++.+ . ......+.+.|+||+|.++=
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred HcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 9999999988888766554433 569999997655 2222211 1 11234578899999986431
Q ss_pred c---C---cHHHHHHHHHHCCcc--------ce-----------------------------------------------
Q psy12983 558 I---G---FEEDMKQIVNLLPKR--------RQ----------------------------------------------- 576 (838)
Q Consensus 558 ~---g---f~~~~~~il~~l~~~--------~q----------------------------------------------- 576 (838)
+ + ....+..+...+... .+
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 0 122222222222110 01
Q ss_pred --------------------------------------------------------------EEEEeeecccchHHHHHH
Q psy12983 577 --------------------------------------------------------------TMLFSATTTAKTETLTKL 594 (838)
Q Consensus 577 --------------------------------------------------------------il~lSAT~~~~~~~l~~~ 594 (838)
+.+||.|......++...
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 111111111111111111
Q ss_pred HccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 595 ALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 595 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
+.. ....+..+ . +....-....++.....|..++...+.. ..++|+||-+.+++..+.+.+.|++.+++-.++
T Consensus 385 Y~l-~vv~iPTn---r-p~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL 459 (822)
T COG0653 385 YGL-DVVVIPTN---R-PIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL 459 (822)
T ss_pred cCC-ceeeccCC---C-cccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee
Confidence 110 00000000 0 0000000011222334566666666554 378899999999999999999999999998888
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc-----------EEEEeCCCCCHHHHHHHhcccCcCCCCcc
Q psy12983 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD-----------WIVQYDPPDDPKEYIHRVGRTARGEGSSG 741 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~-----------~VI~~d~p~s~~~y~Qr~GRagR~~g~~g 741 (838)
+..-...+-+.+-+. -..--|-|||++++||-||.--. +||--.--.|..--.|..||+||. |.+|
T Consensus 460 NAk~h~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQ-GDpG 536 (822)
T COG0653 460 NAKNHAREAEIIAQA--GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQ-GDPG 536 (822)
T ss_pred ccccHHHHHHHHhhc--CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccC-CCcc
Confidence 887664333333332 22234779999999999984222 233333333444456999999997 8999
Q ss_pred EEEEEeccCc
Q psy12983 742 HALLILRPEE 751 (838)
Q Consensus 742 ~~i~l~~~~e 751 (838)
.+-+|++-+|
T Consensus 537 ~S~F~lSleD 546 (822)
T COG0653 537 SSRFYLSLED 546 (822)
T ss_pred hhhhhhhhHH
Confidence 9988887655
No 192
>KOG4284|consensus
Probab=98.97 E-value=4.1e-10 Score=124.86 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=124.3
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTEC 161 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~ 161 (838)
.+||-+++-.-.=+-.+ -++|.+||| ++++++. ..+...+++.+| +++ ..|.+++..|+..+
T Consensus 128 fIGGT~~~~d~~rlk~~-rIvIGtPGR------i~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl--- 196 (980)
T KOG4284|consen 128 FIGGTAHKLDLIRLKQT-RIVIGTPGR------IAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSL--- 196 (980)
T ss_pred EecCchhhhhhhhhhhc-eEEecCchH------HHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhc---
Confidence 46777665433222222 267788888 5555443 235667777777 666 56889999999988
Q ss_pred cccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc--------chHHH
Q psy12983 162 PNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS--------EKRFL 233 (838)
Q Consensus 162 ~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~--------~~K~~ 233 (838)
|+.||.+.||||+|..+.++...||+ +|..|.. +......-+|+|||+.++. +.|..
T Consensus 197 ------------P~~rQv~a~SATYp~nLdn~Lsk~mr-dp~lVr~--n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 197 ------------PQIRQVAAFSATYPRNLDNLLSKFMR-DPALVRF--NADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred ------------chhheeeEEeccCchhHHHHHHHHhc-ccceeec--ccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 99999999999999999999999999 9999665 3444555679999987654 34888
Q ss_pred HHHHHHhhCCCCCeeeeH---------HhhhhcCCceeEEeeCCCChhhhHH
Q psy12983 234 LLFTFLKKNHIGEIVAWH---------VLLLQVIKIKVQTRIGKEDFVTSVR 276 (838)
Q Consensus 234 ~L~~ll~~~~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~~~~~~~ 276 (838)
.|.++++.....++|||+ ++.|...|+.|..+.|.|+..+.+-
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 899999999999999995 4566778999999999999887654
No 193
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=98.97 E-value=1.1e-09 Score=89.36 Aligned_cols=62 Identities=42% Similarity=0.639 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcHHHHHhHHHHHHHHHHHHhcc-ccccccCCCCCCHHHHHhhcCccccccC
Q psy12983 777 DIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSH-HLKQIFDIDTMDLGKDSKHTCVLMTRII 838 (838)
Q Consensus 777 ~~~~~l~~~~~~~~~l~~~~~~a~~~~i~~y~~~-~~~~~f~~~~ldl~~~a~~~~l~~~~~~ 838 (838)
+++.++++++.++..+...+++||.+|+|+|.++ .++.+|++++|||+++|++|||..+|=|
T Consensus 1 ~iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A~sfGL~~~P~v 63 (65)
T PF13959_consen 1 NIQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLAKSFGLLEAPKV 63 (65)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHHHHcCCCCCCCC
Confidence 3678999999999999999999999999999999 9999999999999999999999999853
No 194
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.95 E-value=6.8e-09 Score=96.98 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
+|+-.++...+|+|||--.+.-++..-.. .+.++|||.|||.++..+.+.++.. ++.+. ..-...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~~--- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARMR--- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeeec---
Confidence 45667899999999998755544443322 4789999999999999988766542 33322 111111
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--cHHHHHHHHHHCCccceEEEEeeecccchH
Q psy12983 512 AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG--FEEDMKQIVNLLPKRRQTMLFSATTTAKTE 589 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g--f~~~~~~il~~l~~~~qil~lSAT~~~~~~ 589 (838)
....+.-|-++|...+.+.+.+. ....++++||+||||...... ++..+...... ....+++|||||+....
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSED 141 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT---
T ss_pred --cccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCCC
Confidence 11245578889999887776663 335789999999999854432 33333333221 24679999999997543
No 195
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.95 E-value=1.7e-09 Score=117.40 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=92.5
Q ss_pred HHHHHHHHHH-------------cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 422 IQARTIPPLL-------------EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 422 ~Q~~ai~~i~-------------~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+|.+++..++ ..+..+++..+|+|||..++..+.. +.... .......+|||+|. .+..||..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISY-LKNEF-PQRGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHH-HHHCC-TTSS-S-EEEEE-T-TTHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhh-hhhcc-ccccccceeEeecc-chhhhhhhhh
Confidence 5777777653 2357899999999999887655543 32211 01122359999999 8889999999
Q ss_pred HHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHH--hcCcccccCCceEEEEeCCCcccccCcHHHHHH
Q psy12983 489 KELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHL--QNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQ 566 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l--~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~ 566 (838)
.++.......+....+...............+++|+|.+.+.... .....+.--++++||+||+|.+.+.. .....
T Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~ 155 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYK 155 (299)
T ss_dssp HHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccc
Confidence 998865455665555554122222222345799999999987110 01111222348999999999986543 23333
Q ss_pred HHHHCCccceEEEEeeecccc
Q psy12983 567 IVNLLPKRRQTMLFSATTTAK 587 (838)
Q Consensus 567 il~~l~~~~qil~lSAT~~~~ 587 (838)
.+..+. ....+++||||...
T Consensus 156 ~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-SSS
T ss_pred cccccc-cceEEeeccccccc
Confidence 333454 56678899998764
No 196
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.94 E-value=8.4e-09 Score=110.97 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=59.2
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~----i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
|+| .++|.|.+.+.. +.+|+++++.+|||+|||++++.|++..+...+.. ..+.+++|.++|..+..|....++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHH
Confidence 678 569999995554 45688999999999999999999998776542110 023489999999999998877776
Q ss_pred HH
Q psy12983 490 EL 491 (838)
Q Consensus 490 ~~ 491 (838)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 197
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.94 E-value=8.4e-09 Score=110.97 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=59.2
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~----i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
|+| .++|.|.+.+.. +.+|+++++.+|||+|||++++.|++..+...+.. ..+.+++|.++|..+..|....++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-ccccceeEEeccHHHHHHHHHHHH
Confidence 678 569999995554 45688999999999999999999998776542110 023489999999999998877776
Q ss_pred HH
Q psy12983 490 EL 491 (838)
Q Consensus 490 ~~ 491 (838)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 198
>KOG0388|consensus
Probab=98.94 E-value=1.6e-08 Score=113.21 Aligned_cols=108 Identities=18% Similarity=0.329 Sum_probs=94.9
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce-EEEEccCCccCCCCCCccEEEEeCC
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG-ILLCTDVAARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~-VLVaT~~~~~GiDip~v~~VI~~d~ 719 (838)
.+.++++|+.-.+.+..+.++|...++....+.|.....+|..++++|...++- .|++|.+.+-|||+..++.||+||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 467999999999999999999999999999999999999999999999987665 4789999999999999999999999
Q ss_pred CCCHHHHHHHhcccCcCCCCccE--EEEEecc
Q psy12983 720 PDDPKEYIHRVGRTARGEGSSGH--ALLILRP 749 (838)
Q Consensus 720 p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~~ 749 (838)
.+++..-.|...||.|- |+... +|-++..
T Consensus 1123 DWNPT~D~QAMDRAHRL-GQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRL-GQTRDVTVYRLITR 1153 (1185)
T ss_pred CCCcchhhHHHHHHHhc-cCccceeeeeeccc
Confidence 99999999999999996 44433 3444433
No 199
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.93 E-value=3e-09 Score=123.23 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=136.7
Q ss_pred HhcccccCCCccc-ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 90 VAELTVYPPESFT-LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
+||.+...+..-+ ...|++++.||++ +++++... ...++.++++| ++++||...+..+...+
T Consensus 197 ~gg~~~~~~~~~~~~~~~~Iiv~TP~~------Ll~~~~~~-~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~---- 265 (475)
T PRK01297 197 VGGMDFDKQLKQLEARFCDILVATPGR------LLDFNQRG-EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT---- 265 (475)
T ss_pred EccCChHHHHHHHhCCCCCEEEECHHH------HHHHHHcC-CcccccCceEEechHHHHHhcccHHHHHHHHHhC----
Confidence 3454444443333 3568999999998 78877554 34678888888 77888877777776655
Q ss_pred ccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN 242 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~ 242 (838)
+....+|+++||||++.++.++++.++. +|..+.+.. ......++.|+++.+...+|..+|..++...
T Consensus 266 ---------~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~v~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 333 (475)
T PRK01297 266 ---------PRKEERQTLLFSATFTDDVMNLAKQWTT-DPAIVEIEP--ENVASDTVEQHVYAVAGSDKYKLLYNLVTQN 333 (475)
T ss_pred ---------CCCCCceEEEEEeecCHHHHHHHHHhcc-CCEEEEecc--CcCCCCcccEEEEEecchhHHHHHHHHHHhc
Confidence 1123589999999999999999999998 898866533 3344566889998888888999999999887
Q ss_pred CCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHh-ccCCCcccceEEeccCCcc
Q psy12983 243 HIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHY-KDQPVGLGGVILIENAPAK 302 (838)
Q Consensus 243 ~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 302 (838)
...++||||++ .+...++.+..+||+++..+ |+...+.+ .++.-.+..+.+.+-|.+.
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~--R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHK--RIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH--HHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 77899999644 34566899999999987754 33333433 4566666777666666643
No 200
>KOG4048|consensus
Probab=98.93 E-value=1.4e-09 Score=100.02 Aligned_cols=85 Identities=34% Similarity=0.662 Sum_probs=72.4
Q ss_pred chHHHHHHHH-HhhCCCCCeeeeHHhhhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcccceEEeccCCcccccCC
Q psy12983 229 EKRFLLLFTF-LKKNHIGEIVAWHVLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMP 307 (838)
Q Consensus 229 ~~K~~~L~~l-l~~~~~~~~iVF~~~~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 307 (838)
+-|.++|..+ +++..+++ ...+++..+.|..+|.+|+|..+.+|++.+++||+|+|+|+.|++++|+||
T Consensus 38 ~p~caLlaNLflS~g~pg~----------Vv~~kAk~RtGe~Nf~~CiR~gLe~HyG~KivglgG~FiIqkG~a~~hvm~ 107 (201)
T KOG4048|consen 38 DPQCALLANLFLSEGQPGS----------VVHFKAKVRTGEKNFTNCIRDGLEEHYGKKIVGLGGQFIIQKGKARLHVMA 107 (201)
T ss_pred CchhHHHHHHHhhcCCCCc----------eEEEEeeeecccchHHHHHHHHHHHhcCcccccccceEEEecccccccccc
Confidence 3467666655 45667776 556788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhccc
Q psy12983 308 DFSTTPLETKDQLNVR 323 (838)
Q Consensus 308 ~~s~~p~~~~~~~~~~ 323 (838)
|+|.+|+...+|.+.=
T Consensus 108 dFs~cP~nsdeEVnkW 123 (201)
T KOG4048|consen 108 DFSSCPLNSDEEVNKW 123 (201)
T ss_pred ccCCCCCCCHHHHHHH
Confidence 9998888877776543
No 201
>KOG0386|consensus
Probab=98.87 E-value=2.4e-08 Score=116.52 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=94.2
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCc---eEEEEccCCccCCCCCCccEEEEe
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAET---GILLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~---~VLVaT~~~~~GiDip~v~~VI~~ 717 (838)
.+++++.||....-...+..+|.-.++....+.|....++|-..++.|..... ..|.+|.+.+.|+|+..++.||.|
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 57799999999999999999999889999999999999999999999986543 457899999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 718 DPPDDPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 718 d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
|..+++....|+.-||.|. |....+-++..
T Consensus 805 dsdwnp~~d~qaqdrahri-gq~~evRv~rl 834 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRI-GQKKEVRVLRL 834 (1157)
T ss_pred cCCCCchhHHHHHHHHHHh-hchhheeeeee
Confidence 9999999999999999996 66655555443
No 202
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.74 E-value=2.7e-08 Score=118.53 Aligned_cols=158 Identities=13% Similarity=0.031 Sum_probs=107.5
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCc---------------cccccchhe----eecccccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLL---------------VSVSIFCPF----VLNQGLGK 149 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~lv----~l~~g~~~ 149 (838)
+.||.+...|-.-+-..|+++++| +||+.+...+ .+++++++| =|++||.+
T Consensus 119 l~GG~~~~~q~~~l~~~p~IIVgT----------~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~ 188 (844)
T TIGR02621 119 LRGQFADNDEWMLDPHRPAVIVGT----------VDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQE 188 (844)
T ss_pred EECCCChHHHHHhcCCCCcEEEEC----------HHHHcCCccccccccccccccchhhhhccceEEEEehhhhccccHH
Confidence 478888877777777889999999 3555443321 256777777 35678888
Q ss_pred ccccceEeeccccccccccCcCCCCC---CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEEC
Q psy12983 150 YFKEVSVSFTECPNLTSHPFNLTSAE---RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC 226 (838)
Q Consensus 150 ~~~~i~~~~~d~~dl~~i~~~l~~p~---~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v 226 (838)
+++.|...+.. |+ .+|++|||||+|.++.+++..++. ++..+.+ ..+..+.+++.|+ +.+
T Consensus 189 ~l~~Il~~l~r-------------p~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~i~V--~~~~l~a~ki~q~-v~v 251 (844)
T TIGR02621 189 LLKQIMNEQQR-------------PPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYKHPV--LKKRLAAKKIVKL-VPP 251 (844)
T ss_pred HHHHHHHhccc-------------CcccccceEEEEecCCCccHHHHHHHHcc-CCceeec--ccccccccceEEE-Eec
Confidence 88887775410 22 379999999999999999999988 7877554 2334555667775 455
Q ss_pred CcchHHHHHHHHH---hhCCCCCeeeeHHhhh---------hcCCceeEEeeCCCChhhhH
Q psy12983 227 PSEKRFLLLFTFL---KKNHIGEIVAWHVLLL---------QVIKIKVQTRIGKEDFVTSV 275 (838)
Q Consensus 227 ~~~~K~~~L~~ll---~~~~~~~~iVF~~~~l---------~~~~~~~~~~hg~~~~~~~~ 275 (838)
+.+.|...+...+ .....+++|||||++. ...++ ..+||+|+..+..
T Consensus 252 ~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 5555554333222 1234578999977654 34455 8999999887655
No 203
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.73 E-value=1.5e-07 Score=98.84 Aligned_cols=131 Identities=23% Similarity=0.386 Sum_probs=97.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|+ .|++.|.-++=.+..|+ |+...||-|||+++.+|+.-... .|..|-|++.+..||..=++++..++.
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-------~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-------QGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-------TSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-------hcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 777 89999999997776665 99999999999998888766543 478899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHH-HHHhcC----ccc-ccCCceEEEEeCCCccc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLL-DHLQNT----PEF-LYKNLQCLIIDEADRIL 556 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~-~~l~~~----~~~-~~~~l~lvViDEah~l~ 556 (838)
.++++++....+.+..+..... .++|+++|...+. ++++.. ... ..+.+.++||||+|.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999887765443333 3589999998873 334322 211 24678999999999754
No 204
>KOG0952|consensus
Probab=98.69 E-value=2.4e-09 Score=125.18 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=147.6
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 418 KMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
.+.|.|.+.+..+.. +.++++.+|||+|||++|.+.++..+.. .++.++++++|-++|+..-.+.++......+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-----~p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-----YPGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-----CCCccEEEEcCCchhhcccccchhhhcccCC
Confidence 345566555544332 4678999999999999999999988765 5678999999999999998888888776668
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccc-ccCCceEEEEeCCCcccccCcHHHHHHHH-------
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEF-LYKNLQCLIIDEADRILDIGFEEDMKQIV------- 568 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~-~~~~l~lvViDEah~l~~~gf~~~~~~il------- 568 (838)
.++..+.|+..... .. ....+++|+||+++..+.+++... -+.+++++|+||.|++.+. +++.++.+.
T Consensus 1002 ~k~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 88888888766541 11 234699999999998888765433 3578999999999987665 333333222
Q ss_pred HHCCccceEEEEeeecccchHHHHHHHccCCCeEE-EecCccccccccceeeEEEECCc--hhHHHHHHHHHHhcCCCeE
Q psy12983 569 NLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYI-GVDDTKEEATVAGLEQGYVVCPS--EKRFLLLFTFLKKNRKKKV 645 (838)
Q Consensus 569 ~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i-~~~~~~~~~~~~~l~~~~~~~~~--~~k~~~l~~~l~~~~~~kv 645 (838)
....+.++.+++|--+.+..+-..|.+.+..+-+- .+.+...........- ...|+. .........+....+..++
T Consensus 1078 ~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~-~~~cprm~smnkpa~qaik~~sp~~p~ 1156 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTHSPIKPV 1156 (1230)
T ss_pred cccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCc-hhcchhhhhcccHHHHHHhcCCCCCce
Confidence 22334567777776666555555555554321110 0011111111111111 111221 1112233334444578899
Q ss_pred EEEecchhhHHHHHHHh
Q psy12983 646 MVFFSSCMSVKFHHELL 662 (838)
Q Consensus 646 IIF~~t~~~~~~l~~~L 662 (838)
+||+.++.....-+..|
T Consensus 1157 lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1157 LIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred EEEeecccccccchHhH
Confidence 99999987665544433
No 205
>KOG1015|consensus
Probab=98.66 E-value=7.4e-07 Score=103.05 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=93.1
Q ss_pred HHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcC----------------------CCCeEEecCCCChhHHHHHHH
Q psy12983 631 LLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYI----------------------DLPVMCIHGKQKQMKRTTTFF 686 (838)
Q Consensus 631 ~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~----------------------~~~v~~lhg~m~~~~R~~i~~ 686 (838)
..|+.+|+. .-+.+.|||..+..+...+..+|... |.....+.|..+..+|+...+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 345555553 24679999999999999888888642 445778899999999999999
Q ss_pred HHhcCC----ceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEE
Q psy12983 687 QFCNAE----TGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALL 745 (838)
Q Consensus 687 ~F~~g~----~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~ 745 (838)
.|.+-. ...||+|.+.+-|||+-+++-||.||..|+++--.|.+=|+.|. |+.--+|+
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRf-GQtKPvyi 1270 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRF-GQTKPVYI 1270 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhh-cCcCceee
Confidence 998642 34799999999999999999999999999999999999999997 55544443
No 206
>PTZ00424 helicase 45; Provisional
Probab=98.65 E-value=1.8e-07 Score=106.12 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=124.7
Q ss_pred cccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCC
Q psy12983 100 SFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTS 173 (838)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~ 173 (838)
..+...++++++||++ +.+++.... ..++.+.++| +++.||...+.++...+
T Consensus 141 ~~~~~~~~Ivv~Tp~~------l~~~l~~~~-~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~--------------- 198 (401)
T PTZ00424 141 NKLKAGVHMVVGTPGR------VYDMIDKRH-LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL--------------- 198 (401)
T ss_pred HHHcCCCCEEEECcHH------HHHHHHhCC-cccccccEEEEecHHHHHhcchHHHHHHHHhhC---------------
Confidence 3455668899999998 777765432 4567777777 66677877777776666
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHH
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHV 252 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~ 252 (838)
+...|+++||||+|.++..+...++. +|..+.+. ......++++|+++.++. +.+...+..++......++||||+
T Consensus 199 ~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~ 275 (401)
T PTZ00424 199 PPDVQVALFSATMPNEILELTTKFMR-DPKRILVK--KDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCN 275 (401)
T ss_pred CCCcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeC--CCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 67789999999999999999999998 88875443 233455678999888875 457777888887777788999975
Q ss_pred h---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCc
Q psy12983 253 L---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPA 301 (838)
Q Consensus 253 ~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (838)
+ .+...++.+..+||+++..+. +.....+. ++.--+..+.+++.|.+
T Consensus 276 t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R--~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 276 TRRKVDYLTKKMHERDFTVSCMHGDMDQKDR--DLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEeCCCCHHHH--HHHHHHHHcCCCCEEEEcccccCCcC
Confidence 4 345568899999999876543 33333333 44444555555555544
No 207
>KOG0921|consensus
Probab=98.63 E-value=1.5e-07 Score=108.36 Aligned_cols=318 Identities=16% Similarity=0.167 Sum_probs=189.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH-HhhhcCCeEE
Q psy12983 422 IQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE-LMKYHHHTYG 500 (838)
Q Consensus 422 ~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~-~~~~~~~~v~ 500 (838)
+-.+.+..+..+.-++|.+.||.|||..+.--+|+.+..... .....+.+--|++--+..+++.+.. .....+-.++
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--GASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--cccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 345566666677889999999999999988888887765321 1233456677888877777765543 3333333332
Q ss_pred EEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEE
Q psy12983 501 LIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTML 579 (838)
Q Consensus 501 ~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~ 579 (838)
.-....+.. -...-.|..||-+-+++.+... +..+.++|+||.|...-.+ |...+..=+.-..+...+++
T Consensus 460 y~vRf~Sa~-----prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 460 YNVRFDSAT-----PRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred ccccccccc-----cccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 222211111 0111368999999998877765 3567899999999855443 32222221122233456666
Q ss_pred Eeeecccch--------------------HHHHHHHccCCCeEEE----------ecCccccccccceeeEEEECCch--
Q psy12983 580 FSATTTAKT--------------------ETLTKLALKKEPVYIG----------VDDTKEEATVAGLEQGYVVCPSE-- 627 (838)
Q Consensus 580 lSAT~~~~~--------------------~~l~~~~l~~~~~~i~----------~~~~~~~~~~~~l~~~~~~~~~~-- 627 (838)
||||+.... ..+....+......+. .++........+-+..-..+++.
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 777654311 1111111100000000 00000000000000000011100
Q ss_pred -----------------hHHHHHHHHHH-hcCCCeEEEEecchhhHHHHHHHhhcC-------CCCeEEecCCCChhHHH
Q psy12983 628 -----------------KRFLLLFTFLK-KNRKKKVMVFFSSCMSVKFHHELLNYI-------DLPVMCIHGKQKQMKRT 682 (838)
Q Consensus 628 -----------------~k~~~l~~~l~-~~~~~kvIIF~~t~~~~~~l~~~L~~~-------~~~v~~lhg~m~~~~R~ 682 (838)
.-.+.+...+. ..-.+-+++|.+--..+-.+...|... ...+...|+.....+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 01112222222 234678899999888888887777653 35688899999999999
Q ss_pred HHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCC------------------CCHHHHHHHhcccCcCCCCccEEE
Q psy12983 683 TTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP------------------DDPKEYIHRVGRTARGEGSSGHAL 744 (838)
Q Consensus 683 ~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p------------------~s~~~y~Qr~GRagR~~g~~g~~i 744 (838)
++.+....|..+++++|.+++..+.+.++..||..+.- .+.....||.||+||. ++|+|.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv--R~G~~f 768 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV--RPGFCF 768 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee--cccccc
Confidence 99999899999999999999999999887777754422 3667789999999995 889998
Q ss_pred EEeccCch
Q psy12983 745 LILRPEEL 752 (838)
Q Consensus 745 ~l~~~~e~ 752 (838)
.+.+.--.
T Consensus 769 ~lcs~arF 776 (1282)
T KOG0921|consen 769 HLCSRARF 776 (1282)
T ss_pred cccHHHHH
Confidence 88765433
No 208
>KOG0350|consensus
Probab=98.49 E-value=5.7e-08 Score=105.70 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=132.1
Q ss_pred CeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecc-----ccc------------
Q psy12983 107 SKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTE-----CPN------------ 163 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d-----~~d------------ 163 (838)
|++++|||| |+|||.++++|.++++|||| ||+..|++=+..++.++.. |++
T Consensus 272 DIlVaTPGR------LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt 345 (620)
T KOG0350|consen 272 DILVATPGR------LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPT 345 (620)
T ss_pred ceEEcCchH------HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCch
Confidence 799999999 99999999999999999999 7777777765555544432 221
Q ss_pred ----cccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEec--CCcccccccceEEEEECCcchHHHHHHH
Q psy12983 164 ----LTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD--TKEEATVAGLEQGYVVCPSEKRFLLLFT 237 (838)
Q Consensus 164 ----l~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~--~~~~~~~~~i~q~~v~v~~~~K~~~L~~ 237 (838)
+..-+.++ +...+.|+||||++..-.+++..-++ .|....+.. ......++.+.|+++.+....|..++++
T Consensus 346 ~~~e~~t~~~~~--~~~l~kL~~satLsqdP~Kl~~l~l~-~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~ 422 (620)
T KOG0350|consen 346 VLSELLTKLGKL--YPPLWKLVFSATLSQDPSKLKDLTLH-IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYA 422 (620)
T ss_pred hhHHHHhhcCCc--CchhHhhhcchhhhcChHHHhhhhcC-CCceEEeecccceeeecChhhhhceeecccccchHhHHH
Confidence 11111222 22357889999999999999998888 783322321 1345677889999999999999999999
Q ss_pred HHhhCCCCCeeeeHHhhh-------------hcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCccc
Q psy12983 238 FLKKNHIGEIVAWHVLLL-------------QVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPAKH 303 (838)
Q Consensus 238 ll~~~~~~~~iVF~~~~l-------------~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (838)
++......++|+|+++.- .....++....|.++ ..+|..+..++. ++..+|.-..+.--|.+.-
T Consensus 423 lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~--~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~ 500 (620)
T KOG0350|consen 423 LITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN--GKRRYKMLEKFAKGDINVLICSDALARGIDVN 500 (620)
T ss_pred HHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh--HHHHHHHHHHHhcCCceEEEehhhhhcCCccc
Confidence 999999999999964432 233456666666553 455666666655 5555555555555554444
Q ss_pred ccCC
Q psy12983 304 HVMP 307 (838)
Q Consensus 304 ~~~p 307 (838)
++-.
T Consensus 501 ~v~~ 504 (620)
T KOG0350|consen 501 DVDN 504 (620)
T ss_pred ccce
Confidence 4433
No 209
>KOG2340|consensus
Probab=98.42 E-value=1.1e-05 Score=88.69 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=206.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEec-CCCCc--hhhhHHHHHHHHHhccC---------CC---------------CCC
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAK-TGSGK--TLAFLVPAVELIYNLKF---------MP---------------RNG 468 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~ap-TGsGK--Tl~~~lp~l~~l~~~~~---------~~---------------~~~ 468 (838)
=..+|+.|.+.+..+.+-+|++.--. .+.|+ +-+|.+-+++++.+.+. .. -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 35789999999999888888765322 24455 55788888888765211 00 024
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHHhhhcCC---------eEEE----------------------EeCCcchH--------
Q psy12983 469 TGIIIISPTRELSMQTFGVLKELMKYHHH---------TYGL----------------------IMGGASRQ-------- 509 (838)
Q Consensus 469 ~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~---------~v~~----------------------l~gg~~~~-------- 509 (838)
++|||+||+|+-|..+.+.+..++....- +... +.|.++..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 57999999999999999988887432211 0000 11111100
Q ss_pred -HHHHHH--hcCCcEEEcChHHHHHHHhcCc-----ccccCCceEEEEeCCCcccccCcHHHHHHHH---HHCCcc----
Q psy12983 510 -AEAQKL--AKGINIIVATPGRLLDHLQNTP-----EFLYKNLQCLIIDEADRILDIGFEEDMKQIV---NLLPKR---- 574 (838)
Q Consensus 510 -~~~~~l--~~~~~IvV~Tp~~l~~~l~~~~-----~~~~~~l~lvViDEah~l~~~gf~~~~~~il---~~l~~~---- 574 (838)
...... ....||+||+|--|...+.+.. .-.++.+.++|||-+|.+....|.. +..++ ..+|.+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCC
Confidence 000000 1247999999988877776332 1235789999999999887665533 23333 333321
Q ss_pred -----------------ceEEEEeeecccchHHHHHHHccCCCeEEEecCcccccccc----ceeeEE--EEC-----Cc
Q psy12983 575 -----------------RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVA----GLEQGY--VVC-----PS 626 (838)
Q Consensus 575 -----------------~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~----~l~~~~--~~~-----~~ 626 (838)
+|.++||+-..+....+......+..-.+............ .+.|.+ +.+ ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 36777777666554444443332211111111111110111 111111 111 12
Q ss_pred hhHHHHHHHHHH----hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC-
Q psy12983 627 EKRFLLLFTFLK----KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV- 701 (838)
Q Consensus 627 ~~k~~~l~~~l~----~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~- 701 (838)
+.++.....-+- .....-++||.++.-+--++-+++++.++....+|.-.+...-.+.-+.|-.|...+|+-|.-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 233333322221 223446799999999999999999998887777887777777777888899999999999953
Q ss_pred -CccCCCCCCccEEEEeCCCCCHH---HHHHHhcccCcC---CCCccEEEEEeccCchHHH
Q psy12983 702 -AARGLDIPAVDWIVQYDPPDDPK---EYIHRVGRTARG---EGSSGHALLILRPEELGFL 755 (838)
Q Consensus 702 -~~~GiDip~v~~VI~~d~p~s~~---~y~Qr~GRagR~---~g~~g~~i~l~~~~e~~~~ 755 (838)
.-+-.++.++..||.|.+|..+. .++.+.+|+.-. ++....|.++|+.-|.-.+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 34567899999999999998654 557777776432 2344567788887665433
No 210
>PRK09401 reverse gyrase; Reviewed
Probab=98.40 E-value=5.6e-07 Score=112.97 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=97.6
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-----------cccc-cccccceEeecc-----
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-----------QGLG-KYFKEVSVSFTE----- 160 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-----------~g~~-~~~~~i~~~~~d----- 160 (838)
..|+++++|||+ +.+|++. +....+.++| ||+ +||. ++++.+...+..
T Consensus 178 ~~~~IlV~Tp~r------L~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~ 248 (1176)
T PRK09401 178 GDFDILVTTSQF------LSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYE 248 (1176)
T ss_pred CCCCEEEECHHH------HHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccc
Confidence 469999999999 7888762 3344566666 664 7886 677777766521
Q ss_pred --ccccccc---cCcCCCCCCceEEEEEEeCChH-HHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHH
Q psy12983 161 --CPNLTSH---PFNLTSAERRQTMLFSATTTAK-TETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 234 (838)
Q Consensus 161 --~~dl~~i---~~~l~~p~~rQtlLFSAT~~~~-v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~ 234 (838)
...+..+ +.... ++.+|+++||||+++. +.. ..++ ++..+.+ +.......+|.|.|+.++ +|...
T Consensus 249 ~~~~~i~~l~~~i~~~~-~~~~q~ilfSAT~~~~~~~~---~l~~-~ll~~~v--~~~~~~~rnI~~~yi~~~--~k~~~ 319 (1176)
T PRK09401 249 EIYEKIRELEEKIAELK-DKKGVLVVSSATGRPRGNRV---KLFR-ELLGFEV--GSPVFYLRNIVDSYIVDE--DSVEK 319 (1176)
T ss_pred hhhhHHHHHHHhhhhcc-cCCceEEEEeCCCCccchHH---HHhh-ccceEEe--cCcccccCCceEEEEEcc--cHHHH
Confidence 0011111 11111 2378999999999875 443 2234 5554444 333445678999999877 67777
Q ss_pred HHHHHhhCCCCCeeeeHHh------------hhhcCCceeEEeeCCC
Q psy12983 235 LFTFLKKNHIGEIVAWHVL------------LLQVIKIKVQTRIGKE 269 (838)
Q Consensus 235 L~~ll~~~~~~~~iVF~~~------------~l~~~~~~~~~~hg~~ 269 (838)
|..+++... .++||||++ .|+..|++|..+||++
T Consensus 320 L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 320 LVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred HHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 888887665 579999764 3466799999999999
No 211
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.40 E-value=4.9e-05 Score=88.40 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCC-CCcc-----------EEEEEeccCchHHHHHH
Q psy12983 691 AETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGE-GSSG-----------HALLILRPEELGFLRYL 758 (838)
Q Consensus 691 g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~-g~~g-----------~~i~l~~~~e~~~~~~l 758 (838)
...+.+++-.++-+|.|=|||=.++-.....|..+=+|.+||.-|-. .+.| .-.++++.++..+++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34689999999999999999999999999999999999999999921 1111 23456778889999888
Q ss_pred HH
Q psy12983 759 KQ 760 (838)
Q Consensus 759 ~~ 760 (838)
.+
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 75
No 212
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.35 E-value=5.2e-06 Score=100.07 Aligned_cols=143 Identities=21% Similarity=0.219 Sum_probs=87.1
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH-----Hhhh-c-C--CeEEEEeCC
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE-----LMKY-H-H--HTYGLIMGG 505 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~-----~~~~-~-~--~~v~~l~gg 505 (838)
++.+.++||+|||.+|+..++.+... .+..++||+||+.++-..+...+.. .+.. . + +......++
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~-----~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~ 135 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK-----YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAG 135 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH-----cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecC
Confidence 78999999999999999998887655 3557899999999999888876652 2221 1 2 222223222
Q ss_pred c-------chHHHHHHHhc-------CCcEEEcChHHHHHHHhcCcc----------cccCCc----eEEEEeCCCcccc
Q psy12983 506 A-------SRQAEAQKLAK-------GINIIVATPGRLLDHLQNTPE----------FLYKNL----QCLIIDEADRILD 557 (838)
Q Consensus 506 ~-------~~~~~~~~l~~-------~~~IvV~Tp~~l~~~l~~~~~----------~~~~~l----~lvViDEah~l~~ 557 (838)
. +.......+.. ...|+++|.+.|..-...... ..+..+ -+||+||.|++..
T Consensus 136 k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~ 215 (986)
T PRK15483 136 DKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR 215 (986)
T ss_pred cccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc
Confidence 2 11222222222 478999999988542210000 111111 2799999999865
Q ss_pred cCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 558 IGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 558 ~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.+ .....| ..+.+.. ++.+|||.+.
T Consensus 216 ~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 216 DN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred ch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 32 223334 4444333 5779999976
No 213
>KOG0344|consensus
Probab=98.29 E-value=2.5e-07 Score=103.18 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=101.9
Q ss_pred hhhhccCC-CCccccccchhe------eecc-ccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHH
Q psy12983 122 KLTHNDAT-PLLVSVSIFCPF------VLNQ-GLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETL 193 (838)
Q Consensus 122 ~l~~~~~~-~~~~~~~~~~lv------~l~~-g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~l 193 (838)
+..++... +...+..++|+| +++. +|.+++.+|...+. .+....-|||||++..|+++
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~--------------s~~i~~a~FSat~~~~VEE~ 338 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ--------------SPDIRVALFSATISVYVEEW 338 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhc--------------CcchhhhhhhccccHHHHHH
Confidence 44444433 345678888898 6666 77777777776661 23456679999999999999
Q ss_pred HHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHhh---------h-hcCCcee
Q psy12983 194 TKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVLL---------L-QVIKIKV 262 (838)
Q Consensus 194 a~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~~---------l-~~~~~~~ 262 (838)
++..+. +++.|.+ +......+.|+|..++|.. ..|+..+..++....+.+++||+.+. | ...++.+
T Consensus 339 ~~~i~~-~~~~viv--g~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v 415 (593)
T KOG0344|consen 339 AELIKS-DLKRVIV--GLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINV 415 (593)
T ss_pred HHHhhc-cceeEEE--ecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcce
Confidence 999999 9988655 3344557789999999976 56999999999998888999996443 3 3457889
Q ss_pred EEeeCCCChh
Q psy12983 263 QTRIGKEDFV 272 (838)
Q Consensus 263 ~~~hg~~~~~ 272 (838)
..+||+.+.-
T Consensus 416 ~vIh~e~~~~ 425 (593)
T KOG0344|consen 416 DVIHGERSQK 425 (593)
T ss_pred eeEecccchh
Confidence 9999997655
No 214
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.17 E-value=2.5e-06 Score=86.12 Aligned_cols=146 Identities=19% Similarity=0.268 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH-------HHHH
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF-------GVLK 489 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~-------~~l~ 489 (838)
...+..|..++..+....-+++.||.|+|||+.++..+++.+.+ +.-.+++++-|..+...++- +.+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-----g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-----GEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-----TS-SEEEEEE-S--TT----SS---------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-----CCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 35689999999999988889999999999999999999998866 45668888888876422211 1111
Q ss_pred HHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHH
Q psy12983 490 ELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVN 569 (838)
Q Consensus 490 ~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~ 569 (838)
.++....-....+.+.... ..+.....|-+..+.. ++.. .+++ .+||+|||+.+. ..+++.++.
T Consensus 78 p~~~p~~d~l~~~~~~~~~----~~~~~~~~Ie~~~~~~----iRGr---t~~~-~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 78 PYLRPIYDALEELFGKEKL----EELIQNGKIEIEPLAF----IRGR---TFDN-AFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp TTTHHHHHHHTTTS-TTCH----HHHHHTTSEEEEEGGG----GTT-----B-S-EEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhChHhH----HHHhhcCeEEEEehhh----hcCc---cccc-eEEEEecccCCC----HHHHHHHHc
Confidence 1100000000000011111 1111223455554222 2211 1222 799999999863 467888899
Q ss_pred HCCccceEEEEeee
Q psy12983 570 LLPKRRQTMLFSAT 583 (838)
Q Consensus 570 ~l~~~~qil~lSAT 583 (838)
++..+.+++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 98888888877544
No 215
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.00 E-value=2.1e-05 Score=77.73 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCC--CeEEecCCCChhHHHHHHHHHhcCCceEEEEcc--CCccCCCCCC--ccEE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDL--PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD--VAARGLDIPA--VDWI 714 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~--~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~--~~~~GiDip~--v~~V 714 (838)
..+.++||+++.+..+.+.+.++.... +..++.- +...+..+++.|++++-.||+++. .+.+|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 447999999999999999999987632 2233333 366789999999999999999998 9999999996 7789
Q ss_pred EEeCCCC----C--------------------------HHHHHHHhcccCcCCCCccEEEEEecc
Q psy12983 715 VQYDPPD----D--------------------------PKEYIHRVGRTARGEGSSGHALLILRP 749 (838)
Q Consensus 715 I~~d~p~----s--------------------------~~~y~Qr~GRagR~~g~~g~~i~l~~~ 749 (838)
|..++|. + .....|.+||+-|. ...++.+++.+
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~--~~D~g~i~llD 148 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRS--EDDYGVIILLD 148 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--S--TT-EEEEEEES
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceec--cCCcEEEEEEc
Confidence 9888873 1 12347899999996 33454444433
No 216
>PRK10536 hypothetical protein; Provisional
Probab=97.99 E-value=2.8e-05 Score=80.69 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=86.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH-------HHHH
Q psy12983 415 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ-------TFGV 487 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q-------~~~~ 487 (838)
++...+..|...+..+.++..+++.||+|+|||+.+...+++.+.. +.-.++++.-|+.+.... ..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-----~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-----KDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-----CCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4556788999999999888889999999999999988888876644 234556666676543221 1122
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHHH-hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHH
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQKL-AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQ 566 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~l-~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~ 566 (838)
+..++...--....+.+... ....+ ...-.|-|.. +.+++... +. -++||+||||.+. ...++.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~---~~~~~~~~~~~Iei~~----l~ymRGrt---l~-~~~vIvDEaqn~~----~~~~k~ 195 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF---MQYCLRPEIGKVEIAP----FAYMRGRT---FE-NAVVILDEAQNVT----AAQMKM 195 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH---HHHHHHhccCcEEEec----HHHhcCCc---cc-CCEEEEechhcCC----HHHHHH
Confidence 22222111000000011111 11111 1122455555 23333322 22 2789999999974 367888
Q ss_pred HHHHCCccceEEEEe
Q psy12983 567 IVNLLPKRRQTMLFS 581 (838)
Q Consensus 567 il~~l~~~~qil~lS 581 (838)
++.++..+.++++..
T Consensus 196 ~ltR~g~~sk~v~~G 210 (262)
T PRK10536 196 FLTRLGENVTVIVNG 210 (262)
T ss_pred HHhhcCCCCEEEEeC
Confidence 888888888877654
No 217
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.99 E-value=2.4e-05 Score=81.27 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEecCCCCchhhhHHHHHHHHHhc-cCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEGRD-LVGSAKTGSGKTLAFLVPAVELIYNL-KFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~d-vlv~apTGsGKTl~~~lp~l~~l~~~-~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
++++.|.+|+..++.... .+|.||.|+|||.+..-.+...+... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999998888 99999999999965443333321100 01125688899999999999999988887
No 218
>KOG1016|consensus
Probab=97.93 E-value=0.00099 Score=76.49 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=89.3
Q ss_pred CCeEEEEecchhhHHHHHHHhhcCCC------------------CeEEecCCCChhHHHHHHHHHhcC---CceEEEEcc
Q psy12983 642 KKKVMVFFSSCMSVKFHHELLNYIDL------------------PVMCIHGKQKQMKRTTTFFQFCNA---ETGILLCTD 700 (838)
Q Consensus 642 ~~kvIIF~~t~~~~~~l~~~L~~~~~------------------~v~~lhg~m~~~~R~~i~~~F~~g---~~~VLVaT~ 700 (838)
+.++|||.........+.+.|.+..+ .-..+.|..+..+|++.+++|.+. ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 34788998888888888888876522 234577888999999999999763 235788999
Q ss_pred CCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEE--EEEeccC--chHHH-HHHHHcCC
Q psy12983 701 VAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHA--LLILRPE--ELGFL-RYLKQAKI 763 (838)
Q Consensus 701 ~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~--i~l~~~~--e~~~~-~~l~~~~~ 763 (838)
+..-|||+-..+-+|.||+-++..--.|.+-|+-|. |...-| |-++... |.+.+ +.+.+.|+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrY-GQ~KpcfvYRlVmD~~lEkkIydRQIsKqGm 865 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRY-GQQKPCFVYRLVMDNSLEKKIYDRQISKQGM 865 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhh-cCcCceeEEeehhhhhhHHHHHHHHHhhccc
Confidence 999999998888888899999888889999999996 555444 4445442 23322 45555554
No 219
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.93 E-value=0.00038 Score=84.26 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=50.0
Q ss_pred CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 519 INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 519 ~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
..|+++||..+..-+.... +.++.+..+||||||++.+..-..-+.++...-.+..-+.+|||.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4799999999876665553 778999999999999998765444444555444445568899999864
No 220
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.88 E-value=3e-05 Score=97.74 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=99.9
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-----------cccccc-cccceEeec------
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-----------QGLGKY-FKEVSVSFT------ 159 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-----------~g~~~~-~~~i~~~~~------ 159 (838)
..|+++++|||+ +.+|+..... .++++| ||+ +||.++ ++.++..+.
T Consensus 177 ~~~dIlV~Tp~r------L~~~~~~l~~----~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~ 246 (1171)
T TIGR01054 177 GDFDILITTTMF------LSKNYDELGP----KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY 246 (1171)
T ss_pred CCCCEEEECHHH------HHHHHHHhcC----CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccc
Confidence 359999999998 7777654221 566666 777 789875 566543221
Q ss_pred ---cccccccccCcCCCCCCce--EEEEEEe-CChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHH
Q psy12983 160 ---ECPNLTSHPFNLTSAERRQ--TMLFSAT-TTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL 233 (838)
Q Consensus 160 ---d~~dl~~i~~~l~~p~~rQ--tlLFSAT-~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~ 233 (838)
....+.+++..+ |+.+| .++|||| +|..+.. .+++ ++..+.+ +.......+|.|.|+.++. +..
T Consensus 247 ~~~~~~~~~~~~~~~--~~~~q~~li~~SAT~~p~~~~~---~l~r-~ll~~~v--~~~~~~~r~I~~~~~~~~~--~~~ 316 (1171)
T TIGR01054 247 RALHAKKRLELLEAI--PGKKRGCLIVSSATGRPRGKRA---KLFR-ELLGFEV--GGGSDTLRNVVDVYVEDED--LKE 316 (1171)
T ss_pred hHHHHHHHHHHHHhh--hhccCcEEEEEeCCCCccccHH---HHcc-cccceEe--cCccccccceEEEEEeccc--HHH
Confidence 011122222222 45566 4679999 6766543 2344 5655444 4444566789999987654 234
Q ss_pred HHHHHHhhCCCCCeeeeHHhh------------hhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcccc
Q psy12983 234 LLFTFLKKNHIGEIVAWHVLL------------LQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGG 292 (838)
Q Consensus 234 ~L~~ll~~~~~~~~iVF~~~~------------l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (838)
.|..+++... .++||||++. |+..|++|..+||+++ .+.+.+.-.++.--|++
T Consensus 317 ~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~-----~~~l~~Fr~G~~~vLVa 381 (1171)
T TIGR01054 317 TLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP-----KEDYEKFAEGEIDVLIG 381 (1171)
T ss_pred HHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC-----HHHHHHHHcCCCCEEEE
Confidence 5667776654 5799998664 3567899999999986 24444444444433444
No 221
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.88 E-value=5.6e-05 Score=76.70 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLEGR--DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~--dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
++++-|.+++..++... -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+....+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~~------- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA------AGKRVIGLAPTNKAAKELREKT------- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH------TT--EEEEESSHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh------CCCeEEEECCcHHHHHHHHHhh-------
Confidence 47899999999997543 477889999999975 3334444433 4688999999998877755431
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc---ccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP---EFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~---~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~ 572 (838)
+.. ..|..+++....... ...+...++|||||+-++.. ..+..++...+
T Consensus 67 ~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAK 118 (196)
T ss_dssp TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-
T ss_pred Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHH
Confidence 111 122222211111100 00145567999999998753 45666777766
Q ss_pred c-cceEEEEeee
Q psy12983 573 K-RRQTMLFSAT 583 (838)
Q Consensus 573 ~-~~qil~lSAT 583 (838)
. +.+++++.-+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 5 6677776544
No 222
>KOG0391|consensus
Probab=97.87 E-value=8.3e-05 Score=88.31 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC--ceEEEEccCCcc
Q psy12983 629 RFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE--TGILLCTDVAAR 704 (838)
Q Consensus 629 k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~--~~VLVaT~~~~~ 704 (838)
|+..|..++... .+.++|||..-.+..+.+...|+..|+-...+.|....++|+..+++|..+. ++.+++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 556666666643 5779999999999999999999999999999999999999999999998764 356789999999
Q ss_pred CCCCCCccEEEEeCCCCCHHHHHHHhcccCcCC-CCccEEEEEeccC
Q psy12983 705 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGE-GSSGHALLILRPE 750 (838)
Q Consensus 705 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~-g~~g~~i~l~~~~ 750 (838)
|||+-+++.||+||..+++.--.|.-.|+.|.| -+.-..|-|++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999998877777666666642 1233456667653
No 223
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.80 E-value=7.2e-05 Score=88.97 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=63.7
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECC----------cchHHHHHHHHHhh--
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP----------SEKRFLLLFTFLKK-- 241 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~----------~~~K~~~L~~ll~~-- 241 (838)
++.+|++|||||++++++.++ .+++ +|..|.+. ..+...|+|+|+... +.+|...+..+...
T Consensus 319 ~~~rq~ILmSATl~~dv~~l~-~~~~-~p~~I~I~----grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 319 DKIRSLFLMTATLEDDRDRIK-EFFP-NPAFVHIP----GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred hhcCEEEEEccCCcHhHHHHH-HHhc-CCcEEEeC----CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 345799999999999999885 6888 89887663 133456889887543 12233344444332
Q ss_pred CCCCCeeeeHHhh---------hhcC--CceeEEeeCCCChh
Q psy12983 242 NHIGEIVAWHVLL---------LQVI--KIKVQTRIGKEDFV 272 (838)
Q Consensus 242 ~~~~~~iVF~~~~---------l~~~--~~~~~~~hg~~~~~ 272 (838)
...+++|||+++. |+.. ++.+..+||+++..
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence 2346899996543 3433 68999999999875
No 224
>PRK14701 reverse gyrase; Provisional
Probab=97.79 E-value=7.7e-05 Score=96.31 Aligned_cols=144 Identities=15% Similarity=0.037 Sum_probs=90.9
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-----------ccccccccc----ceEee--cc-
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-----------QGLGKYFKE----VSVSF--TE- 160 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-----------~g~~~~~~~----i~~~~--~d- 160 (838)
.|+++++||++ +.++++... ...+.++| ||+ +||.+++.+ |+... .+
T Consensus 178 ~~dILV~TPgr------L~~~~~~l~---~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~ 248 (1638)
T PRK14701 178 DFDILVTTAQF------LARNFPEMK---HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNI 248 (1638)
T ss_pred CCCEEEECCch------hHHhHHHHh---hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhccccccc
Confidence 59999999997 666554321 13455555 554 689888764 33210 00
Q ss_pred ---c---cccccccCcCCCCCCce-EEEEEEeCChH--HHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchH
Q psy12983 161 ---C---PNLTSHPFNLTSAERRQ-TMLFSATTTAK--TETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 231 (838)
Q Consensus 161 ---~---~dl~~i~~~l~~p~~rQ-tlLFSAT~~~~--v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K 231 (838)
+ ..+...+..+ |+.+| .++||||+++. +..+ ++ ++..+.+ +.......++.|.|+.++.++|
T Consensus 249 ~~~~~~~~~l~~~~~~~--~~~~~~ll~~SAT~~~r~~~~~l----~~-~~l~f~v--~~~~~~lr~i~~~yi~~~~~~k 319 (1638)
T PRK14701 249 EDAMEKREILNKEIEKI--GNKIGCLIVASATGKAKGDRVKL----YR-ELLGFEV--GSGRSALRNIVDVYLNPEKIIK 319 (1638)
T ss_pred chhhhhhhhhhhhhhhc--CCCccEEEEEecCCCchhHHHHH----hh-cCeEEEe--cCCCCCCCCcEEEEEECCHHHH
Confidence 1 1122222222 44556 67899999964 3333 35 6766544 4445566789999998877666
Q ss_pred HHHHHHHHhhCCCCCeeeeHHh------------hhhcCCceeEEeeCC
Q psy12983 232 FLLLFTFLKKNHIGEIVAWHVL------------LLQVIKIKVQTRIGK 268 (838)
Q Consensus 232 ~~~L~~ll~~~~~~~~iVF~~~------------~l~~~~~~~~~~hg~ 268 (838)
..|..+++.. ..++||||++ .|...|++|..+||+
T Consensus 320 -~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 320 -EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred -HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 4577777766 3679999754 346679999999996
No 225
>KOG0391|consensus
Probab=97.77 E-value=0.00011 Score=87.28 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.++.||...++++. ++-|.|+...+|-|||..- +.++.++... ..+..--||||||-.+.+ |.-+|++|+.
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACe---egnWGPHLIVVpTsviLn-WEMElKRwcP 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACE---EGNWGPHLIVVPTSVILN-WEMELKRWCP 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhc---ccCCCCceEEeechhhhh-hhHHHhhhCC
Confidence 47899999998865 3568899999999999764 4445555432 234445699999977655 5557788755
Q ss_pred hcCCeEEEEeCCcchHHHHHH-H--hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQK-L--AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL 570 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~-l--~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~ 570 (838)
+.++...+|......+.+. . .+..+|.|+++..+.+-+.. |.-+++.++|+||||++.++ .....+.+-.
T Consensus 690 --glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A---FkrkrWqyLvLDEaqnIKnf--ksqrWQAlln 762 (1958)
T KOG0391|consen 690 --GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA---FKRKRWQYLVLDEAQNIKNF--KSQRWQALLN 762 (1958)
T ss_pred --cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH---HHhhccceeehhhhhhhcch--hHHHHHHHhc
Confidence 5677667776544333221 1 12368999998887655443 33467899999999999885 3333333333
Q ss_pred CCccceEEEEeeecccc
Q psy12983 571 LPKRRQTMLFSATTTAK 587 (838)
Q Consensus 571 l~~~~qil~lSAT~~~~ 587 (838)
+. ..+-++++.|+-.+
T Consensus 763 fn-sqrRLLLtgTPLqN 778 (1958)
T KOG0391|consen 763 FN-SQRRLLLTGTPLQN 778 (1958)
T ss_pred cc-hhheeeecCCchhh
Confidence 33 34567778886543
No 226
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.75 E-value=0.00028 Score=74.57 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=104.2
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE----------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
.++..|.+++-...+ +.-+++--.||.||--...-.+++...+ ..++.+++..+..|-.+..+.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~------Gr~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR------GRKRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc------CCCceEEEECChhhhhHHHHH
Confidence 478889888866542 2457777889999998766666665543 355799999999999999999
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc----cc----cc---CCceEEEEeCCCccc
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP----EF----LY---KNLQCLIIDEADRIL 556 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~----~~----~~---~~l~lvViDEah~l~ 556 (838)
++.+... .+.+..+..-.... ...-...|+++|...|...-.... .+ .+ +.=.+||+||||...
T Consensus 111 l~DIG~~-~i~v~~l~~~~~~~----~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 111 LRDIGAD-NIPVHPLNKFKYGD----IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HHHhCCC-cccceechhhccCc----CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 9987654 33333332211110 011234799999988866542211 00 01 112589999999987
Q ss_pred ccCc--------HHHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 557 DIGF--------EEDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 557 ~~gf--------~~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
+..- +..+..+.+.+|. .+++.+|||-.....++
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRNM 227 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCcee
Confidence 6532 2355556667754 55999999987654443
No 227
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.69 E-value=0.00091 Score=68.30 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=90.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 404 CENTLKAIADMGFTKMTEIQARTIPPLLE---GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 404 ~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~---~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
++|++ .-.+.++ .+++.|.+....+.+ |++.+.++-+|.|||.+ ++|++..+.. ++..-+.+++| ++|
T Consensus 11 P~wLl-~E~e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-----dg~~LvrviVp-k~L 81 (229)
T PF12340_consen 11 PDWLL-FEIESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-----DGSRLVRVIVP-KAL 81 (229)
T ss_pred hHHHH-HHHHcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-----CCCcEEEEEcC-HHH
Confidence 34443 2234566 789999999988875 57999999999999987 5777777655 33455667777 579
Q ss_pred HHHHHHHHHHHhhhc-CCeEEEE--eCCcch--H--HHH----HHHhcCCcEEEcChHHHHHHHhcC-------cc----
Q psy12983 481 SMQTFGVLKELMKYH-HHTYGLI--MGGASR--Q--AEA----QKLAKGINIIVATPGRLLDHLQNT-------PE---- 538 (838)
Q Consensus 481 a~Q~~~~l~~~~~~~-~~~v~~l--~gg~~~--~--~~~----~~l~~~~~IvV~Tp~~l~~~l~~~-------~~---- 538 (838)
..|..+.+...+... +..+..+ ...... . ... +.....-.|+++||+.++++.... ..
T Consensus 82 l~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~ 161 (229)
T PF12340_consen 82 LEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEAR 161 (229)
T ss_pred HHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988876543 3222221 122211 1 111 112234579999999876543211 00
Q ss_pred ------cccCCceEEEEeCCCcccc
Q psy12983 539 ------FLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 539 ------~~~~~l~lvViDEah~l~~ 557 (838)
-.+++...=|+||+|.++.
T Consensus 162 ~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 162 ELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHhcCCeEeECchhccC
Confidence 0123344578999997654
No 228
>KOG1802|consensus
Probab=97.64 E-value=0.00038 Score=78.93 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=63.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 411 IADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 411 l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
+...++.+++.-|..|+.+++...-.+|+||.|+|||.+-.-.+++.+.. .+..+|+.+|+.--+.|+++.+.+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh------cCCceEEEcccchhHHHHHHHHHh
Confidence 34478889999999999999999999999999999999876666655433 577899999999999998877766
Q ss_pred H
Q psy12983 491 L 491 (838)
Q Consensus 491 ~ 491 (838)
.
T Consensus 477 t 477 (935)
T KOG1802|consen 477 T 477 (935)
T ss_pred c
Confidence 4
No 229
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.64 E-value=0.0002 Score=87.31 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=90.4
Q ss_pred CcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe--eec-ccccccc-----ccceEeeccccccccccCc
Q psy12983 99 ESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF--VLN-QGLGKYF-----KEVSVSFTECPNLTSHPFN 170 (838)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv--~l~-~g~~~~~-----~~i~~~~~d~~dl~~i~~~ 170 (838)
|+-+-..+.+++.|+|. +++++++.+ .++.+.++| ..+ +.+..|+ .++...+
T Consensus 84 ~~~~s~~t~I~v~T~G~------Llr~l~~d~--~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l------------ 143 (819)
T TIGR01970 84 ENKVSRRTRLEVVTEGI------LTRMIQDDP--ELDGVGALIFDEFHERSLDADLGLALALDVQSSL------------ 143 (819)
T ss_pred ccccCCCCcEEEECCcH------HHHHHhhCc--ccccCCEEEEeccchhhhccchHHHHHHHHHHhc------------
Confidence 34344567889999999 888887754 567777776 222 2233332 2222222
Q ss_pred CCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHH-----HHHHHHHhhCCCC
Q psy12983 171 LTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF-----LLLFTFLKKNHIG 245 (838)
Q Consensus 171 l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~-----~~L~~ll~~~~~~ 245 (838)
+++.|+++||||++.+. + ..|+. ++..|.+.. . .-.|+++|..++..+++ ..+..+++. ..+
T Consensus 144 ---r~dlqlIlmSATl~~~~--l-~~~l~-~~~vI~~~g--r---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g 210 (819)
T TIGR01970 144 ---REDLKILAMSATLDGER--L-SSLLP-DAPVVESEG--R---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETG 210 (819)
T ss_pred ---CCCceEEEEeCCCCHHH--H-HHHcC-CCcEEEecC--c---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCC
Confidence 56789999999999764 3 45666 665554421 1 12378888877665543 334444444 357
Q ss_pred CeeeeHHh---------hhhc---CCceeEEeeCCCChhhh
Q psy12983 246 EIVAWHVL---------LLQV---IKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 246 ~~iVF~~~---------~l~~---~~~~~~~~hg~~~~~~~ 274 (838)
++|||++. .|.. .++.+..+||+++.-+-
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq 251 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQ 251 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHH
Confidence 89999643 3333 37899999999987654
No 230
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.56 E-value=0.00028 Score=86.17 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=89.6
Q ss_pred CcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe--eec-ccccccc-----ccceEeeccccccccccCc
Q psy12983 99 ESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF--VLN-QGLGKYF-----KEVSVSFTECPNLTSHPFN 170 (838)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv--~l~-~g~~~~~-----~~i~~~~~d~~dl~~i~~~ 170 (838)
|+..-..+.+++.|+|+ +++++++.+ .++.+.++| ..+ +++..|+ .++...+
T Consensus 87 ~~~~~~~t~I~v~T~G~------Llr~l~~d~--~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l------------ 146 (812)
T PRK11664 87 ESKVGPNTRLEVVTEGI------LTRMIQRDP--ELSGVGLVILDEFHERSLQADLALALLLDVQQGL------------ 146 (812)
T ss_pred ccccCCCCcEEEEChhH------HHHHHhhCC--CcCcCcEEEEcCCCccccccchHHHHHHHHHHhC------------
Confidence 33333445688999999 888887654 567777766 222 2333332 1222222
Q ss_pred CCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHH-----HHHHHHhhCCCC
Q psy12983 171 LTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFL-----LLFTFLKKNHIG 245 (838)
Q Consensus 171 l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~-----~L~~ll~~~~~~ 245 (838)
+++.|+++||||++.+ .++ .++. ++..|.+. +. .-.|+++|+.++..+++. .+..+++. ..+
T Consensus 147 ---r~~lqlilmSATl~~~--~l~-~~~~-~~~~I~~~-gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g 213 (812)
T PRK11664 147 ---RDDLKLLIMSATLDND--RLQ-QLLP-DAPVIVSE-GR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESG 213 (812)
T ss_pred ---CccceEEEEecCCCHH--HHH-HhcC-CCCEEEec-Cc----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCC
Confidence 4678999999999875 343 5666 56555442 11 124889998877666553 34444443 357
Q ss_pred CeeeeHHh---------hhhc---CCceeEEeeCCCChhhh
Q psy12983 246 EIVAWHVL---------LLQV---IKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 246 ~~iVF~~~---------~l~~---~~~~~~~~hg~~~~~~~ 274 (838)
.++||+++ .|+. .++.+..+||+++.-+-
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq 254 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQ 254 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHH
Confidence 89999643 3343 47889999999988543
No 231
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.53 E-value=0.0014 Score=77.54 Aligned_cols=144 Identities=20% Similarity=0.211 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCe
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHT 498 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~ 498 (838)
..++|+.|+...+.++-.+|.|+.|+|||.+.. .++..+... ......++++.+||.--|..+.+.+.......+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 468999999999999999999999999997642 222222221 11234678899999988888776665543322110
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccc-----ccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEF-----LYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~-----~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
. .. ......-..|-.+++........+ +.-.+++|||||+-++. ...+..+++.+++
T Consensus 230 ---------~-~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ---------D-EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPP 291 (615)
T ss_pred ---------h-hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhccc
Confidence 0 00 011111233433333221111111 12346899999998863 4566778888998
Q ss_pred cceEEEEeee
Q psy12983 574 RRQTMLFSAT 583 (838)
Q Consensus 574 ~~qil~lSAT 583 (838)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887654
No 232
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.52 E-value=0.00032 Score=78.10 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=67.8
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQK 514 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~ 514 (838)
-++|.|..|||||++++-.+..... ...+..++++++...|...+...+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~------------------ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P------------------ 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc--c------------------
Confidence 4789999999999887655554411 14577889999999999988777766420 0
Q ss_pred HhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-------cHHHHHHHHHH
Q psy12983 515 LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-------FEEDMKQIVNL 570 (838)
Q Consensus 515 l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-------f~~~~~~il~~ 570 (838)
......+..+..+...... .......+++|||||||++...+ ....+..+++.
T Consensus 58 --~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011223334444332221 11234678999999999998732 23556666655
No 233
>KOG1803|consensus
Probab=97.40 E-value=0.00062 Score=77.07 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEGRD-LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~d-vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
.+.+-|..|+......++ .++.||.|+|||.+....+.+++. .++++||.+||..-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 678889999998887754 789999999999998888888774 47899999999998888887533
No 234
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.39 E-value=0.0013 Score=78.62 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 417 TKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
..+++.|..|+..++.. ...+|.||+|+|||.+..-.+.+++. .+.++++++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 36799999999998876 67899999999999876555544442 356899999999999988877765
No 235
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.38 E-value=0.002 Score=78.08 Aligned_cols=130 Identities=20% Similarity=0.159 Sum_probs=81.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
..++ .+++.|.+|+..+..++-.++.|+.|+|||.+. ..++..+... .....+++++||-.-|..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL----GGLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc----CCCceEEEEeCchHHHHHHHHhc----
Confidence 3566 899999999999998899999999999999753 3444443321 11267888999987776443211
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcC----cccccCCceEEEEeCCCcccccCcHHHHHHHH
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNT----PEFLYKNLQCLIIDEADRILDIGFEEDMKQIV 568 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~----~~~~~~~l~lvViDEah~l~~~gf~~~~~~il 568 (838)
+.. -.|..+++...... ..-.....++|||||++++.. ..+..++
T Consensus 389 ---g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll 437 (720)
T TIGR01448 389 ---GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLL 437 (720)
T ss_pred ---CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHH
Confidence 110 01111111110000 000123468999999999854 3456677
Q ss_pred HHCCccceEEEEeee
Q psy12983 569 NLLPKRRQTMLFSAT 583 (838)
Q Consensus 569 ~~l~~~~qil~lSAT 583 (838)
..++...+++++.-+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 778888888887654
No 236
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.35 E-value=0.0019 Score=76.15 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeE
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTY 499 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v 499 (838)
.++|+.|+..++.++-.+|.|+.|+|||.+.. .++..+.... ......++++.+||---|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~-~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQS-PKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhc-cccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 38999999999999999999999999998642 2223222211 00113579999999888777666655433211110
Q ss_pred EEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc-----cccCCceEEEEeCCCcccccCcHHHHHHHHHHCCcc
Q psy12983 500 GLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE-----FLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKR 574 (838)
Q Consensus 500 ~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-----~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~ 574 (838)
. . ......+-..|..+++........ .+...+++|||||+-++.. ..+..+++.+++.
T Consensus 224 --------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 --------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPN 286 (586)
T ss_pred --------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCC
Confidence 0 0 001111223444444332211111 1123578999999988643 4667788888888
Q ss_pred ceEEEEeee
Q psy12983 575 RQTMLFSAT 583 (838)
Q Consensus 575 ~qil~lSAT 583 (838)
.++|++.-.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888877644
No 237
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.30 E-value=0.00022 Score=86.76 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=104.4
Q ss_pred cccccCCCeeeeCCCcccchhhhhh-hccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCC
Q psy12983 100 SFTLSNPSKLTHNDGQSHLEEHKLT-HNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLT 172 (838)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~ 172 (838)
..+..+|.++++||+. |...++. |.+ -...+++++++| +++ .|..++..++..+. .+....
T Consensus 124 ~~i~~~~~IivtTPd~--L~~~~L~~~~~--~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~------ri~~~~- 191 (742)
T TIGR03817 124 RWAREHARYVLTNPDM--LHRGILPSHAR--WARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLR------RLCARY- 191 (742)
T ss_pred HHHhcCCCEEEEChHH--HHHhhccchhH--HHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHH------HHHHhc-
Confidence 3456778899999865 1111221 111 012367888888 322 35555555554441 111111
Q ss_pred CCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-----------------chHHHHH
Q psy12983 173 SAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-----------------EKRFLLL 235 (838)
Q Consensus 173 ~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-----------------~~K~~~L 235 (838)
+...|+++||||++...+ ++..++. +|..+ +. . +..... ..+.++..+. .++...|
T Consensus 192 -g~~~q~i~~SATi~n~~~-~~~~l~g-~~~~~-i~-~-~~~~~~-~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l 264 (742)
T TIGR03817 192 -GASPVFVLASATTADPAA-AASRLIG-APVVA-VT-E-DGSPRG-ARTVALWEPPLTELTGENGAPVRRSASAEAADLL 264 (742)
T ss_pred -CCCCEEEEEecCCCCHHH-HHHHHcC-CCeEE-EC-C-CCCCcC-ceEEEEecCCccccccccccccccchHHHHHHHH
Confidence 456899999999998865 5666777 67553 32 1 212222 2333332221 2455667
Q ss_pred HHHHhhCCCCCeeeeHHhhh---------hc--------CCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEec
Q psy12983 236 FTFLKKNHIGEIVAWHVLLL---------QV--------IKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIE 297 (838)
Q Consensus 236 ~~ll~~~~~~~~iVF~~~~l---------~~--------~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (838)
..++.. ..++|||+++.. .. .+..+..+||++..-+ |+.+.+.+. ++.-++..+.+.+
T Consensus 265 ~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e--R~~ie~~f~~G~i~vLVaTd~le 340 (742)
T TIGR03817 265 ADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED--RRELERALRDGELLGVATTNALE 340 (742)
T ss_pred HHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH--HHHHHHHHHcCCceEEEECchHh
Confidence 777664 468999976543 11 2567889999988654 555555444 5666677777777
Q ss_pred cCCcccc
Q psy12983 298 NAPAKHH 304 (838)
Q Consensus 298 ~~~~~~~ 304 (838)
-|.+.-+
T Consensus 341 rGIDI~~ 347 (742)
T TIGR03817 341 LGVDISG 347 (742)
T ss_pred ccCCccc
Confidence 7766543
No 238
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.00085 Score=56.73 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+.-++|.||.|||||...+-.+...+.... ..+.++++++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARA---DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CCCCeEEEECCCHHHHHHHHHHH
Confidence 344566999999999776666655553211 22788999999999999888777
No 239
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.15 E-value=0.002 Score=80.96 Aligned_cols=140 Identities=15% Similarity=0.086 Sum_probs=85.4
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe-------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF-------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv-------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
-..+.+++.|+|+ +++++++.+ .++.+.++| +|+.+|.-. .+..+ + +...
T Consensus 161 s~~t~I~v~TpG~------LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg---~Lk~l---------L---~~rp 217 (1294)
T PRK11131 161 SDNTMVKLMTDGI------LLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILG---YLKEL---------L---PRRP 217 (1294)
T ss_pred CCCCCEEEEChHH------HHHHHhcCC--ccccCcEEEecCccccccccchHHH---HHHHh---------h---hcCC
Confidence 4578899999999 999987654 477888777 344444321 11111 1 1113
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcch---HHHHHHHHH------hhCCCCC
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK---RFLLLFTFL------KKNHIGE 246 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~---K~~~L~~ll------~~~~~~~ 246 (838)
+.|+++||||++. +.+++.|.+ .|+ |.+. + . + -.++++|..+...+ +...+..++ ....++.
T Consensus 218 dlKvILmSATid~--e~fs~~F~~-apv-I~V~-G-r--~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNN-API-IEVS-G-R--T-YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCC-CCE-EEEc-C-c--c-ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 5899999999975 478877766 564 4442 2 1 1 23778887764321 222232222 2345688
Q ss_pred eeeeHHh---------hhhcCCc---eeEEeeCCCChhhh
Q psy12983 247 IVAWHVL---------LLQVIKI---KVQTRIGKEDFVTS 274 (838)
Q Consensus 247 ~iVF~~~---------~l~~~~~---~~~~~hg~~~~~~~ 274 (838)
+|||+++ .|...++ .+..+||+++.-+.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ 328 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQ 328 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHH
Confidence 9999644 3444444 47889999986643
No 240
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.06 E-value=0.0016 Score=82.35 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHH
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHV 252 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~ 252 (838)
+.++|+++||||.++.+..++...++ ++..|.. .+. ....+++++..... ..|...+..+. ..++++||++
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~-d~~~I~~--~p~--~r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n 817 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMR-DLSIIAT--PPA--RRLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYN 817 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCC-CcEEEec--CCC--CCCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEEC
Confidence 67899999999998888888888888 8988654 221 12246666655433 22444444443 3468999975
Q ss_pred hh---------hhcC--CceeEEeeCCCChhhhHHHHHHHHhccCCCcccceEEeccCCcc
Q psy12983 253 LL---------LQVI--KIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAK 302 (838)
Q Consensus 253 ~~---------l~~~--~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (838)
+. +... ++.+..+||+|+.-+ ..+.+.+...++.--|+.+.+++.|.+.
T Consensus 818 ~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~e-Re~im~~Fr~Gk~~VLVaTdIierGIDI 877 (1147)
T PRK10689 818 DVENIQKAAERLAELVPEARIAIGHGQMRERE-LERVMNDFHHQRFNVLVCTTIIETGIDI 877 (1147)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHH-HHHHHHHHHhcCCCEEEECchhhccccc
Confidence 43 3333 678999999997754 3344455555666667777777666654
No 241
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.06 E-value=0.003 Score=67.77 Aligned_cols=144 Identities=20% Similarity=0.191 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH------
Q psy12983 414 MGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF------ 485 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~------ 485 (838)
+|+...+..|.-|+..++.. .-+.+.|+.|||||+.++.+.+......+ .-.+++|-=|+..+.+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----RYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----hhceEEEecCCcCcccccCcCCCch
Confidence 68877778888899988876 34788999999999999999888876632 3456777777776554321
Q ss_pred -HHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccccc--------CC--ceEEEEeCCCc
Q psy12983 486 -GVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLY--------KN--LQCLIIDEADR 554 (838)
Q Consensus 486 -~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~--------~~--l~lvViDEah~ 554 (838)
+.+.-|++..- +..+.+.+.. =++.+.+...+.... +.+ ++ =.+||||||+.
T Consensus 300 EeKm~PWmq~i~-------------DnLE~L~~~~---~~~~~~l~~~l~~~~-iev~alt~IRGRSl~~~FiIIDEaQN 362 (436)
T COG1875 300 EEKMGPWMQAIF-------------DNLEVLFSPN---EPGDRALEEILSRGR-IEVEALTYIRGRSLPDSFIIIDEAQN 362 (436)
T ss_pred hhhccchHHHHH-------------hHHHHHhccc---ccchHHHHHHHhccc-eeeeeeeeecccccccceEEEehhhc
Confidence 11111111100 0000000000 011122222222111 111 11 15899999998
Q ss_pred ccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 555 ILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 555 l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
+ -..+++.|+.+..+..+++++.-
T Consensus 363 L----TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 363 L----TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred c----CHHHHHHHHHhccCCCEEEEcCC
Confidence 7 45788999999999888887653
No 242
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.02 E-value=0.00075 Score=75.38 Aligned_cols=124 Identities=11% Similarity=-0.034 Sum_probs=73.1
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc--chHHHHHHHHHhh-CCCCCeeeeH
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS--EKRFLLLFTFLKK-NHIGEIVAWH 251 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~--~~K~~~L~~ll~~-~~~~~~iVF~ 251 (838)
.+.|+++||||+|+.+.++...+.. .+........ .......|.+..+.. ..+...+..++.. ..++++|||+
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGY-VEFNEPLDLK---EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCC-cccccCCCCc---cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 3689999999999888887766544 2221111000 000112444443332 3456666666654 3467899997
Q ss_pred Hhhh---------hcCCc--eeEEeeCCCChhhhHHH---HHHHHhccCCCcccceEEeccCCcc
Q psy12983 252 VLLL---------QVIKI--KVQTRIGKEDFVTSVRN---VLAAHYKDQPVGLGGVILIENAPAK 302 (838)
Q Consensus 252 ~~~l---------~~~~~--~~~~~hg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (838)
++.. ...+. .+..+||.++..+..+. .+...-.+++.-+..+.+++-|.+.
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi 294 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI 294 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc
Confidence 6543 33333 59999999988766543 2333333555566667677777665
No 243
>KOG0349|consensus
Probab=97.01 E-value=0.00046 Score=74.40 Aligned_cols=169 Identities=11% Similarity=0.093 Sum_probs=117.3
Q ss_pred HHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeecccc
Q psy12983 89 IVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECP 162 (838)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~ 162 (838)
++||.-..-|-+.+----++++.+||| +++.+.. ....+..++||| +|..|+.+-+.+.-.++ |
T Consensus 323 miggv~~r~Q~~ql~~g~~ivvGtpgR------l~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qi---p 392 (725)
T KOG0349|consen 323 MIGGVLKRTQCKQLKDGTHIVVGTPGR------LLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQI---P 392 (725)
T ss_pred hhhhHHhHHHHHHhhcCceeeecCchh------hhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccc---h
Confidence 678888888888888888999999999 7777644 334677889988 77778888777766666 2
Q ss_pred ccccccCcCCCCCCceEEEEEEeCCh-HHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc--chHHHHHHHHH
Q psy12983 163 NLTSHPFNLTSAERRQTMLFSATTTA-KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS--EKRFLLLFTFL 239 (838)
Q Consensus 163 dl~~i~~~l~~p~~rQtlLFSAT~~~-~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~--~~K~~~L~~ll 239 (838)
.+.+. -..-|..+.|||+.. +|+++++..|+ -|.-+++ ..+...++++.|....+.. +.-+.-|...+
T Consensus 393 ~~tsd------g~rlq~~vCsatlh~feVkk~~ervmh-fptwVdL--kgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i 463 (725)
T KOG0349|consen 393 HMTSD------GFRLQSPVCSATLHIFEVKKVGERVMH-FPTWVDL--KGEDLVPETVHHVVKLVCPSVDGSWCDLRQFI 463 (725)
T ss_pred hhhcC------CcccccceeeeEEeEEEeeehhhhhcc-CceeEec--ccccccchhhccceeecCCccCccHHHHhhhh
Confidence 22211 134688999999975 89999999999 8988665 4556777777777665432 11223333332
Q ss_pred -------------------------------------hhCCCCCeeeeHHhhh------------hcCCceeEEeeCCCC
Q psy12983 240 -------------------------------------KKNHIGEIVAWHVLLL------------QVIKIKVQTRIGKED 270 (838)
Q Consensus 240 -------------------------------------~~~~~~~~iVF~~~~l------------~~~~~~~~~~hg~~~ 270 (838)
+++.-.++||||.+.. ....+.|.++||+..
T Consensus 464 ~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrk 543 (725)
T KOG0349|consen 464 ETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRK 543 (725)
T ss_pred ccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCC
Confidence 2233467899975432 123589999999998
Q ss_pred hhhhHH
Q psy12983 271 FVTSVR 276 (838)
Q Consensus 271 ~~~~~~ 276 (838)
..+.-.
T Consensus 544 P~Erk~ 549 (725)
T KOG0349|consen 544 PDERKA 549 (725)
T ss_pred hhHHHH
Confidence 776543
No 244
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.91 E-value=0.0044 Score=67.44 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCe
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHT 498 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~ 498 (838)
+++-|.+++.. ....++|.|..|||||.+.+.-+..++.... .+..+++++++|+..+.++.+.+...+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 57889999987 6788999999999999988777777765532 345679999999999999999999876543211
Q ss_pred EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHH
Q psy12983 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHL 533 (838)
Q Consensus 499 v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l 533 (838)
................+.|+|-..+...+
T Consensus 76 ------~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 76 ------SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp ------CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred ------ccccccccccccccchheeehhhhhhhhh
Confidence 00111111222234578899987765433
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.89 E-value=0.0047 Score=57.91 Aligned_cols=25 Identities=40% Similarity=0.275 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
+++.++|.|++|+|||.+....+-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999875544443
No 246
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.80 E-value=0.014 Score=72.35 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=78.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCC-CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGR-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~-dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
+.|+ .+++-|.+++..++.++ -+++.|+.|+|||.+ +..+.+.+. ..+.+++.++||---|..+. +
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e------~~G~~V~~~ApTGkAA~~L~----e- 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE------AAGYEVRGAALSGIAAENLE----G- 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH------HcCCeEEEecCcHHHHHHHh----h-
Confidence 3566 89999999999998865 478999999999975 344444432 24778999999976554432 1
Q ss_pred hhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 492 MKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 492 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
..++. -.|..+|+..+... ...+...++|||||+-++... .+..+++..
T Consensus 409 --~tGi~------------------------a~TI~sll~~~~~~-~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a 457 (988)
T PRK13889 409 --GSGIA------------------------SRTIASLEHGWGQG-RDLLTSRDVLVIDEAGMVGTR----QLERVLSHA 457 (988)
T ss_pred --ccCcc------------------------hhhHHHHHhhhccc-ccccccCcEEEEECcccCCHH----HHHHHHHhh
Confidence 11111 01222222111111 123456689999999987644 344455432
Q ss_pred -CccceEEEEeee
Q psy12983 572 -PKRRQTMLFSAT 583 (838)
Q Consensus 572 -~~~~qil~lSAT 583 (838)
+...+++++.=+
T Consensus 458 ~~~garvVLVGD~ 470 (988)
T PRK13889 458 ADAGAKVVLVGDP 470 (988)
T ss_pred hhCCCEEEEECCH
Confidence 446677777655
No 247
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.78 E-value=0.016 Score=70.70 Aligned_cols=124 Identities=17% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCCCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 414 MGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.++ .+++-|.+|+..+..+ +-+++.|+.|+|||... -.+...+ . ..+..+++++||---+..+. +
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~-----~~g~~V~~~ApTg~Aa~~L~----~-- 414 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-E-----AAGYRVIGAALSGKAAEGLQ----A-- 414 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-H-----hCCCeEEEEeCcHHHHHHHH----h--
Confidence 344 6899999999998874 67899999999999652 3333333 2 24778999999976655443 1
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH-C
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL-L 571 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~-l 571 (838)
..+... .|..+++..+... ...+...++|||||+-++.... +..++.. .
T Consensus 415 -~~g~~a------------------------~Ti~~~~~~~~~~-~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~ 464 (744)
T TIGR02768 415 -ESGIES------------------------RTLASLEYAWANG-RDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAE 464 (744)
T ss_pred -ccCCce------------------------eeHHHHHhhhccC-cccCCCCcEEEEECcccCCHHH----HHHHHHHHH
Confidence 111110 1222221111111 1224567899999999876543 3344442 2
Q ss_pred CccceEEEEe
Q psy12983 572 PKRRQTMLFS 581 (838)
Q Consensus 572 ~~~~qil~lS 581 (838)
....+++++.
T Consensus 465 ~~~~kliLVG 474 (744)
T TIGR02768 465 EAGAKVVLVG 474 (744)
T ss_pred hcCCEEEEEC
Confidence 3456676665
No 248
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.76 E-value=0.0075 Score=57.62 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=38.8
Q ss_pred EEecCCCChhHHHHHHHHHhcCCc-eEEEEccCCccCCCCCC--ccEEEEeCCC
Q psy12983 670 MCIHGKQKQMKRTTTFFQFCNAET-GILLCTDVAARGLDIPA--VDWIVQYDPP 720 (838)
Q Consensus 670 ~~lhg~m~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GiDip~--v~~VI~~d~p 720 (838)
..+.-+.+..+...+++.|++..- .||++|.-+++|+|+|+ ++.||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344444555567899999987643 79999988999999987 5678877766
No 249
>KOG1132|consensus
Probab=96.67 E-value=0.01 Score=70.13 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCCCCcHHHHHHHHHHHc----CCCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPPLLE----GRDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~----~~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
|.| +|++.|...+..++. ..+.++.+|||+|||++.+-..+...
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~ 65 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQ 65 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHH
Confidence 677 889999998887764 57899999999999997655555433
No 250
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.65 E-value=0.0079 Score=57.54 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCC---CeEEecCCCChhHHHHHHHHHhcCCc---eEEEEccC--CccCCCCCC--ccEEEEeCCC
Q psy12983 655 VKFHHELLNYIDL---PVMCIHGKQKQMKRTTTFFQFCNAET---GILLCTDV--AARGLDIPA--VDWIVQYDPP 720 (838)
Q Consensus 655 ~~~l~~~L~~~~~---~v~~lhg~m~~~~R~~i~~~F~~g~~---~VLVaT~~--~~~GiDip~--v~~VI~~d~p 720 (838)
.+.+++.+++.+. ....+.-+....+...++++|++... .||+++.- +++|||+|+ ++.||..++|
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 4455555554432 22233323333455788999987544 68888876 999999987 5788887777
No 251
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.62 E-value=0.0025 Score=81.48 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=52.6
Q ss_pred cccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eecccccc----ccccceEeeccccccccccC
Q psy12983 100 SFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGK----YFKEVSVSFTECPNLTSHPF 169 (838)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~----~~~~i~~~~~d~~dl~~i~~ 169 (838)
..+...|++++.||++ +.+++.+.....+++++++| +++..+.. .++.+...+
T Consensus 94 rll~~ppdILVTTPEs------L~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~----------- 156 (1490)
T PRK09751 94 KLTRNPPDILITTPES------LYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL----------- 156 (1490)
T ss_pred HHhcCCCCEEEecHHH------HHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC-----------
Confidence 3455678999999998 55555443223678889888 44432222 334433333
Q ss_pred cCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEE
Q psy12983 170 NLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYI 205 (838)
Q Consensus 170 ~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i 205 (838)
+...|+++||||+++ .+++++.....+|+.|
T Consensus 157 ----~~~~QrIgLSATI~n-~eevA~~L~g~~pv~I 187 (1490)
T PRK09751 157 ----HTSAQRIGLSATVRS-ASDVAAFLGGDRPVTV 187 (1490)
T ss_pred ----CCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEE
Confidence 566899999999987 5666653322146654
No 252
>PRK04296 thymidine kinase; Provisional
Probab=96.59 E-value=0.0028 Score=63.97 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=26.3
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.-.++.||+|+|||..++-.+.... ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~-------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE-------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-------HcCCeEEEEec
Confidence 4468999999999987665555543 24677888866
No 253
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.55 E-value=0.0015 Score=66.48 Aligned_cols=79 Identities=25% Similarity=0.353 Sum_probs=59.6
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
..++.++.|+++ +++++.+.. +.+..+.++| +.+.+|...+..+...+ ++.+
T Consensus 118 ~~~~iiv~T~~~------l~~~l~~~~-~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l---------------~~~~ 175 (203)
T cd00268 118 RGPHIVVATPGR------LLDLLERGK-LDLSKVKYLVLDEADRMLDMGFEDQIREILKLL---------------PKDR 175 (203)
T ss_pred CCCCEEEEChHH------HHHHHHcCC-CChhhCCEEEEeChHHhhccChHHHHHHHHHhC---------------Cccc
Confidence 367788888887 777776554 4566677666 33455666666666655 5689
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEE
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYI 205 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i 205 (838)
|.++||||+++.+..+...+++ +|..|
T Consensus 176 ~~~~~SAT~~~~~~~~~~~~~~-~~~~~ 202 (203)
T cd00268 176 QTLLFSATMPKEVRDLARKFLR-NPVRI 202 (203)
T ss_pred EEEEEeccCCHHHHHHHHHHCC-CCEEe
Confidence 9999999999999999999999 88874
No 254
>PRK08181 transposase; Validated
Probab=96.51 E-value=0.034 Score=59.16 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=64.0
Q ss_pred cHHHHHHHH----HHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 420 TEIQARTIP----PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 420 ~~~Q~~ai~----~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
...|..++. .+.+++++++.||+|+|||-.+...+..++ ..+..++++ +..+|..+..... .
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-------~~g~~v~f~-~~~~L~~~l~~a~----~-- 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI-------ENGWRVLFT-RTTDLVQKLQVAR----R-- 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH-------HcCCceeee-eHHHHHHHHHHHH----h--
Confidence 445554442 344678999999999999976554444333 235556554 4455555443110 0
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc-HHHHHHHHHHCCcc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF-EEDMKQIVNLLPKR 574 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf-~~~~~~il~~l~~~ 574 (838)
. .+.+++++. +.+.+++||||.+......+ ...+..+++....+
T Consensus 155 ---------~------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 155 ---------E------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred ---------C------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 0 011112211 24568999999998655432 34455566554334
Q ss_pred ceEEEEeeecc
Q psy12983 575 RQTMLFSATTT 585 (838)
Q Consensus 575 ~qil~lSAT~~ 585 (838)
..+++.|-.++
T Consensus 200 ~s~IiTSN~~~ 210 (269)
T PRK08181 200 RSILITANQPF 210 (269)
T ss_pred CCEEEEcCCCH
Confidence 45555555444
No 255
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.45 E-value=0.015 Score=72.06 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=72.3
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHH
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHV 252 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~ 252 (838)
+...|+++||||..+....++...+. ++..|.. .+.. ...+++++...+... +...+..+ ...+++++|++
T Consensus 597 ~~~~~vL~~SATpiprtl~~~l~g~~-d~s~I~~--~p~~--R~~V~t~v~~~~~~~i~~~i~~el---~~g~qv~if~n 668 (926)
T TIGR00580 597 RTSVDVLTLSATPIPRTLHMSMSGIR-DLSIIAT--PPED--RLPVRTFVMEYDPELVREAIRREL---LRGGQVFYVHN 668 (926)
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCC-CcEEEec--CCCC--ccceEEEEEecCHHHHHHHHHHHH---HcCCeEEEEEC
Confidence 56789999999987777666666666 7777543 2211 223666665433221 22222222 23468899965
Q ss_pred hh---------hhc--CCceeEEeeCCCChhhhHHHHHHHHhccCCCcccceEEeccCCccc
Q psy12983 253 LL---------LQV--IKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKH 303 (838)
Q Consensus 253 ~~---------l~~--~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (838)
+. ++. .++++..+||+|+.-+ ..+.+.+...++.-=|+.+.+++.|.+..
T Consensus 669 ~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~e-Re~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 669 RIESIEKLATQLRELVPEARIAIAHGQMTENE-LEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEecCCCCHHH-HHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 43 333 2689999999997643 33444444455666666666666665543
No 256
>KOG1805|consensus
Probab=96.40 E-value=0.013 Score=69.99 Aligned_cols=129 Identities=22% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 417 TKMTEIQARTIPPLLEGRD-LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~d-vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
..++..|++|+..++..+| .+|.|=.|+|||.+....+-.++. .|+++|..+=|..-+..+.-.++......
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-------~gkkVLLtsyThsAVDNILiKL~~~~i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-------LGKKVLLTSYTHSAVDNILIKLKGFGIYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-------cCCeEEEEehhhHHHHHHHHHHhccCcce
Confidence 4789999999999887655 688899999999875444333332 48889999988887777766555542211
Q ss_pred ---CC--eE------EEEeCCcc--hHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 496 ---HH--TY------GLIMGGAS--RQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 496 ---~~--~v------~~l~gg~~--~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
|. .+ ..+..+.+ .-+......+.+.||.+|---+. .+.+..+.+++.|||||-.+..
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-----~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-----HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-----chhhhccccCEEEEcccccccc
Confidence 00 00 00011111 11222334456789999932222 2334457799999999987654
No 257
>PRK06526 transposase; Provisional
Probab=96.27 E-value=0.014 Score=61.75 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHHcCCCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 428 PPLLEGRDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 428 ~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
..+..+.++++.||+|+|||..+...+....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3344678999999999999987665554443
No 258
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.25 E-value=0.034 Score=52.35 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
++.+++.||+|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999654
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.20 E-value=0.01 Score=55.37 Aligned_cols=41 Identities=34% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+..+++.||+|+|||..+...+.... .....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~-------~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC-------CCCCCEEEECCEEcc
Confidence 46789999999999976544433221 112357777776544
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.055 Score=60.54 Aligned_cols=123 Identities=17% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
.+.+++.||||+|||.+..-.+....... ...+.++.++. +.|.-+.++. +.+....++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQL---~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS---DDKSLNIKIITIDNYRIGAKKQI---QTYGDIMGIPVKA--------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh---ccCCCeEEEEeccCccHHHHHHH---HHHhhcCCcceEe---------
Confidence 35689999999999998765554332210 01234444443 4444444443 3333333333321
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCcc-ceEEEEeeecccc
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKR-RQTMLFSATTTAK 587 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~-~qil~lSAT~~~~ 587 (838)
+-++..+...+.. +++.++|+||++.+..... ....+..++....+. ..++.+|||....
T Consensus 239 ------------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 ------------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ------------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1133333333332 2567899999999875321 234455555554433 4678999998753
No 261
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.09 E-value=0.017 Score=71.39 Aligned_cols=148 Identities=18% Similarity=0.077 Sum_probs=80.7
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccc--cccccccceEeeccccccccccCcCCCCC
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQG--LGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g--~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
..+..++.+|++-.-...++++++.... ...+.++| |++.| |..++..+.... .. ..
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~--~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr-------~~------fp 615 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNS--RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK-------QK------FP 615 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhh--ccccceeccCcchhhhhcccchHHHHHHHHHHH-------Hh------CC
Confidence 4677888888872211223333322111 11233333 56666 555555432111 00 13
Q ss_pred CceEEEEEEeCChHHHHHHHHhccC-CCEEEEEecCCcccccccceEEEEECCcchH-HHHHHHHHhhC-CCCCeeeeHH
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKK-EPVYIGVDDTKEEATVAGLEQGYVVCPSEKR-FLLLFTFLKKN-HIGEIVAWHV 252 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~-~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K-~~~L~~ll~~~-~~~~~iVF~~ 252 (838)
..|+++||||+++.+++-....+.. ++..+.- + -...++ +|.+++...+ ...+..++... ...++||||.
T Consensus 616 ~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---S--f~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 616 NIPVLALTATATASVKEDVVQALGLVNCVVFRQ---S--FNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---c--cCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeC
Confidence 5789999999999988744443331 4443211 1 111223 4444554433 34556666543 3567899964
Q ss_pred h---------hhhcCCceeEEeeCCCChhh
Q psy12983 253 L---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 253 ~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
+ .|...|+.+..+||+|+.-+
T Consensus 689 SRke~E~LAe~L~~~Gika~~YHAGLs~ee 718 (1195)
T PLN03137 689 SRMDCEKVAERLQEFGHKAAFYHGSMDPAQ 718 (1195)
T ss_pred chhHHHHHHHHHHHCCCCeeeeeCCCCHHH
Confidence 3 45778999999999997753
No 262
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.99 E-value=0.088 Score=65.87 Aligned_cols=136 Identities=15% Similarity=0.078 Sum_probs=80.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 404 CENTLKAIADMGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 404 ~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
++..++.....++ .+++-|.+++..+.. ++-.++.|+.|+|||.+ +.++...+. ..+.+++.++||---+.
T Consensus 368 ~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e------~~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 368 REAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE------AAGYRVVGGALAGKAAE 439 (1102)
T ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH------HcCCeEEEEcCcHHHHH
Confidence 3344444334455 799999999998864 46689999999999965 333444332 35778999999976655
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHH
Q psy12983 483 QTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEE 562 (838)
Q Consensus 483 Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~ 562 (838)
.+. + ..++.. .|..+++...... ...+..-++|||||+-++...
T Consensus 440 ~L~----e---~~Gi~a------------------------~TIas~ll~~~~~-~~~l~~~~vlVIDEAsMv~~~---- 483 (1102)
T PRK13826 440 GLE----K---EAGIQS------------------------RTLSSWELRWNQG-RDQLDNKTVFVLDEAGMVASR---- 483 (1102)
T ss_pred HHH----H---hhCCCe------------------------eeHHHHHhhhccC-ccCCCCCcEEEEECcccCCHH----
Confidence 432 2 112221 1111211011111 122455679999999987543
Q ss_pred HHHHHHHHCC-ccceEEEEeee
Q psy12983 563 DMKQIVNLLP-KRRQTMLFSAT 583 (838)
Q Consensus 563 ~~~~il~~l~-~~~qil~lSAT 583 (838)
.+..++...+ ...+++++.-+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4444555543 46677777655
No 263
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.90 E-value=0.015 Score=65.03 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 418 KMTEIQARTIPPL------LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 418 ~~~~~Q~~ai~~i------~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
++++-|++++..+ .++..+++.|+-|+|||.. +-++..... ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-----~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-----SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-----cccceEEEecchHHHHHhc
Confidence 3678899998888 5678899999999999964 333333322 3467899999987655544
No 264
>PHA02533 17 large terminase protein; Provisional
Probab=95.88 E-value=0.057 Score=63.07 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-|..+++.++......+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-----NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 6899999999887666777889999999999876545443332 24568999999999999999888876554321
Q ss_pred eEE-EEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc--c
Q psy12983 498 TYG-LIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK--R 574 (838)
Q Consensus 498 ~v~-~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~--~ 574 (838)
... .+... +. ....+.++..|.+.|.. .....=.+..++|+||+|.+.+ +......+...+.. .
T Consensus 134 l~~~~i~~~-~~--~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 134 FLQPGIVEW-NK--GSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred Hhhcceeec-Cc--cEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 100 00000 00 01112345555444411 0011113467899999998654 23333333333322 2
Q ss_pred ceEEEEeee
Q psy12983 575 RQTMLFSAT 583 (838)
Q Consensus 575 ~qil~lSAT 583 (838)
.+++.+|..
T Consensus 201 ~r~iiiSTp 209 (534)
T PHA02533 201 SKIIITSTP 209 (534)
T ss_pred ceEEEEECC
Confidence 345555544
No 265
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.81 E-value=0.053 Score=68.71 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=90.6
Q ss_pred HHHHHHHHhcccccCCCcc---------cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe-------eeccc
Q psy12983 83 ESLLDRIVAELTVYPPESF---------TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF-------VLNQG 146 (838)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv-------~l~~g 146 (838)
.++..|+-.++.....+.| .=.++.+.+.|+|. |++++.+.+ .+..+.++| +|+.+
T Consensus 125 ~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGi------LLr~l~~d~--~L~~~~~IIIDEaHERsL~~D 196 (1283)
T TIGR01967 125 RTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGI------LLAETQQDR--FLSRYDTIIIDEAHERSLNID 196 (1283)
T ss_pred HHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceeeeccccH------HHHHhhhCc--ccccCcEEEEcCcchhhccch
Confidence 3555565555544433322 22456678899999 888887655 356667665 33333
Q ss_pred cccc-cccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEE
Q psy12983 147 LGKY-FKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVV 225 (838)
Q Consensus 147 ~~~~-~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~ 225 (838)
|.-. +++++.. ..+.|.++||||++. +.+++.|.. .|+ |.+. +. . -.++.+|..
T Consensus 197 ~LL~lLk~il~~----------------rpdLKlIlmSATld~--~~fa~~F~~-apv-I~V~-Gr---~-~PVev~Y~~ 251 (1283)
T TIGR01967 197 FLLGYLKQLLPR----------------RPDLKIIITSATIDP--ERFSRHFNN-API-IEVS-GR---T-YPVEVRYRP 251 (1283)
T ss_pred hHHHHHHHHHhh----------------CCCCeEEEEeCCcCH--HHHHHHhcC-CCE-EEEC-CC---c-ccceeEEec
Confidence 3322 2222111 125799999999974 578887765 564 3342 21 1 135666765
Q ss_pred CCc------chHHHHHHHHHh---hCCCCCeeeeHHh---------hhhcC---CceeEEeeCCCChhhh
Q psy12983 226 CPS------EKRFLLLFTFLK---KNHIGEIVAWHVL---------LLQVI---KIKVQTRIGKEDFVTS 274 (838)
Q Consensus 226 v~~------~~K~~~L~~ll~---~~~~~~~iVF~~~---------~l~~~---~~~~~~~hg~~~~~~~ 274 (838)
+.. .++...+...+. ...++.++||++. .|+.. ++.+..+||+++.-+-
T Consensus 252 ~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ 321 (1283)
T TIGR01967 252 LVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQ 321 (1283)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHH
Confidence 432 123333333332 2356889999643 33333 4578999999987654
No 266
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.08 Score=58.77 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=62.6
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC-C-HHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP-T-RELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P-t-~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
+..+++.||||+|||......+...... .+..++.++.- + +.=+.++. +.+....++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-----~G~~~V~lit~D~~R~ga~EqL---~~~a~~~gv~~~~--------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-----FGASKVALLTTDSYRIGGHEQL---RIFGKILGVPVHA--------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEecccccccHHHHH---HHHHHHcCCceEe---------
Confidence 5679999999999999876555544322 12234444432 1 22233333 3333333333322
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEEEeeecccch
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAKT 588 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~ 588 (838)
+-+++.+...+.. +.+.++|+||++=+..... ....+..+.....+...++.+|||.....
T Consensus 200 ------------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 200 ------------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ------------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 2233333222221 2456899999997543221 22333333222223345888999986644
No 267
>KOG1001|consensus
Probab=95.66 E-value=0.041 Score=65.54 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=77.3
Q ss_pred eEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC-ce-EEEEccCCccCCCCCCccEEEEeCCCC
Q psy12983 644 KVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE-TG-ILLCTDVAARGLDIPAVDWIVQYDPPD 721 (838)
Q Consensus 644 kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~-~~-VLVaT~~~~~GiDip~v~~VI~~d~p~ 721 (838)
+++||+.-..-+..+...|...++....+.|.|+...|.+.+..|.++. .. .+++..+...|+++-.+++|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 6777777666666666666666777788889999999999999998543 23 356788899999999999999999999
Q ss_pred CHHHHHHHhcccCcCCCCc
Q psy12983 722 DPKEYIHRVGRTARGEGSS 740 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~g~~ 740 (838)
++..--|.+-|+.|- |..
T Consensus 621 np~~eeQaidR~hri-gq~ 638 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRI-GQT 638 (674)
T ss_pred ChHHHHHHHHHHHHh-ccc
Confidence 999999999999996 444
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=95.65 E-value=0.14 Score=56.30 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC--HH-HHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT--RE-LSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt--~~-La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
.-+++.|++|+|||.+....+.. +.. .+.+++++... |. -..|+. .+....++.+.....+.....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~-l~~------~g~~V~li~~Dt~R~~a~eqL~----~~a~~lgv~v~~~~~g~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYY-LKK------NGFSVVIAAGDTFRAGAIEQLE----EHAERLGVKVIKHKYGADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH-HHH------cCCeEEEecCCcCcHHHHHHHH----HHHHHcCCceecccCCCCHHH
Confidence 45789999999999875544432 222 35566665532 23 333432 233333443322111111111
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchH
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTE 589 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~ 589 (838)
. +.+.+... ...+.++|+||.+.++.. ..+...++.+.....+...++.++||......
T Consensus 210 v-----------------~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 210 V-----------------AYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred H-----------------HHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 0 11111111 113467999999998753 33566777777777777788999998866544
Q ss_pred HHHHH
Q psy12983 590 TLTKL 594 (838)
Q Consensus 590 ~l~~~ 594 (838)
.....
T Consensus 270 ~~a~~ 274 (336)
T PRK14974 270 EQARE 274 (336)
T ss_pred HHHHH
Confidence 44443
No 269
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.012 Score=66.53 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=75.9
Q ss_pred EEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh-hcCCeEEEEeCCcchH----HHH
Q psy12983 438 GSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK-YHHHTYGLIMGGASRQ----AEA 512 (838)
Q Consensus 438 v~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~-~~~~~v~~l~gg~~~~----~~~ 512 (838)
..+.||||||++..-.++.... ++-...|+.|....+.......+..-.. ..-..-...+++.... ...
T Consensus 2 f~matgsgkt~~ma~lil~~y~------kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK------KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH------hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc
Confidence 4689999999987666666542 3455678888877766654433322110 0000000111111100 000
Q ss_pred HHHhcCCcEEEcChHHHHHHHhcCccc-----ccCCceE-EEEeCCCcccccC-------------cHHHHHHHHHHCCc
Q psy12983 513 QKLAKGINIIVATPGRLLDHLQNTPEF-----LYKNLQC-LIIDEADRILDIG-------------FEEDMKQIVNLLPK 573 (838)
Q Consensus 513 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~-----~~~~l~l-vViDEah~l~~~g-------------f~~~~~~il~~l~~ 573 (838)
....++..|+++|.+.|...+.+.+.- .+++..+ ++-||||++.... |...+...+. -.+
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nk 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNK 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCC
Confidence 012345789999999987766554321 2344444 5669999986532 2222222111 123
Q ss_pred cceEEEEeeeccc
Q psy12983 574 RRQTMLFSATTTA 586 (838)
Q Consensus 574 ~~qil~lSAT~~~ 586 (838)
+.-++.+|||.+.
T Consensus 155 d~~~lef~at~~k 167 (812)
T COG3421 155 DNLLLEFSATIPK 167 (812)
T ss_pred CceeehhhhcCCc
Confidence 4457889999884
No 270
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.58 E-value=0.17 Score=51.18 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA 512 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~ 512 (838)
-+++.||||+|||.+..-.+.....+ +.++.+++ ..|.=+.++.+.+.+. .++.+.......+..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-------~~~v~lis~D~~R~ga~eQL~~~a~~---l~vp~~~~~~~~~~~~~- 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-------GKKVALISADTYRIGAVEQLKTYAEI---LGVPFYVARTESDPAEI- 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEESTSSTHHHHHHHHHHHH---HTEEEEESSTTSCHHHH-
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-------cccceeecCCCCCccHHHHHHHHHHH---hccccchhhcchhhHHH-
Confidence 36789999999999876666554322 44454444 3454455544444443 34443322111111111
Q ss_pred HHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchHH
Q psy12983 513 QKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTET 590 (838)
Q Consensus 513 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~ 590 (838)
+.+.+.. ...++.++|+||-+-+.... ....+++.++....+..-.+.+|||.......
T Consensus 72 ----------------~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 72 ----------------AREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp ----------------HHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred ----------------HHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 1112221 12245789999999765432 24566777777776667788999998875544
No 271
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.43 E-value=0.17 Score=53.02 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCcccccCcHH-HHHHHHHH-CCccceEEEEeeec
Q psy12983 542 KNLQCLIIDEADRILDIGFEE-DMKQIVNL-LPKRRQTMLFSATT 584 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~-~~~~il~~-l~~~~qil~lSAT~ 584 (838)
.+.++|||||++......|.. .+..|+.. ......+++.|--.
T Consensus 161 ~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 457899999999876544543 34445544 22345556555443
No 272
>PRK12377 putative replication protein; Provisional
Probab=95.40 E-value=0.15 Score=53.65 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF 485 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~ 485 (838)
..++++.||+|+|||-.+...+-.+. . .+..+++ ++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~------~g~~v~~-i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-A------KGRSVIV-VTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-H------cCCCeEE-EEHHHHHHHHH
Confidence 36799999999999976544433332 2 3444544 45456666544
No 273
>KOG0989|consensus
Probab=95.37 E-value=0.047 Score=57.61 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=37.6
Q ss_pred ccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHH
Q psy12983 540 LYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTK 593 (838)
Q Consensus 540 ~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~ 593 (838)
....++.+|+||||.|....+ ..+.+.+...+...++++.+.-+..-...+..
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 456679999999999877643 45566666677778888888776654444433
No 274
>PRK08727 hypothetical protein; Validated
Probab=95.32 E-value=0.071 Score=55.68 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCcccccC-cHHHHHHHHHHCCc-cceEEEEeeecc
Q psy12983 542 KNLQCLIIDEADRILDIG-FEEDMKQIVNLLPK-RRQTMLFSATTT 585 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~-~~qil~lSAT~~ 585 (838)
.+.++|||||+|.+..+. ....+..+++.... ..++++.|..++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 445789999999987543 33344455554432 334555444443
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.28 E-value=0.76 Score=61.95 Aligned_cols=209 Identities=13% Similarity=0.163 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.+++-|.+++..++.. +-.+|.|+.|+|||.+ +-.+...+ + ..|..++.++||-.-+....+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~-----~~G~~V~~lAPTgrAA~~L~e~~g~~A--- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-S-----EQGYEIQIITAGSLSAQELRQKIPRLA--- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-H-----hcCCeEEEEeCCHHHHHHHHHHhcchh---
Confidence 6899999999998875 5689999999999965 23333333 2 357889999999876655443211100
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHC-Ccc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL-PKR 574 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l-~~~ 574 (838)
.+.......+.. ..-..|...|+ . ....+..-++|||||+-++.. ..+..++... +.+
T Consensus 499 ----------~Ti~~~l~~l~~--~~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 ----------STFITWVKNLFN--DDQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHN 557 (1960)
T ss_pred ----------hhHHHHHHhhcc--cccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcC
Confidence 000000111111 11122322332 1 112235668999999998754 3455555544 457
Q ss_pred ceEEEEeeeccc------chHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHH-HHHhc-CCCeEE
Q psy12983 575 RQTMLFSATTTA------KTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFT-FLKKN-RKKKVM 646 (838)
Q Consensus 575 ~qil~lSAT~~~------~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~-~l~~~-~~~kvI 646 (838)
.+++++.-+-.- ....+.... ............... .+ .........+...+.. ++... ...+++
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~---gv~t~~l~~i~rq~~--~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG---GVTTYAWVDTKQQKA--SV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC---CCcEEEeecccccCc--ce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 888888765221 122222211 112222211111111 11 1122222333333332 33322 334689
Q ss_pred EEecchhhHHHHHHHhhc
Q psy12983 647 VFFSSCMSVKFHHELLNY 664 (838)
Q Consensus 647 IF~~t~~~~~~l~~~L~~ 664 (838)
|+..+.++.+.+...++.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888888777654
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.21 E-value=0.19 Score=48.48 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=25.6
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+++.|++|+|||..+...+.... ..+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-------~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-------TKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-------hcCCEEEEEECCcchH
Confidence 68899999999986554444332 2356677776654433
No 277
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.3 Score=54.19 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHH-HHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRE-LSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~-La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
+.+.+.||||+|||......+.... . .+.++.++. |.|. -+.|+ +.+....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~------~GkkVglI~aDt~RiaAvEQL----k~yae~lgipv----------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-G------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEV----------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-H------cCCcEEEEecCCcchHHHHHH----HHHhhhcCCcE-----------
Confidence 5688999999999988766655432 2 244454444 3332 22332 22222222221
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEEEeeecccch-
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAKT- 588 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~- 588 (838)
++..+|..+.+.+..... ..++++|+||-+=+..... .-..+..++....+..-++.+|||.....
T Consensus 300 ----------~v~~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 ----------IAVRDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ----------EecCCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 123456666554443211 1257899999987644322 23444555554444545677999866533
Q ss_pred HHHHHH
Q psy12983 589 ETLTKL 594 (838)
Q Consensus 589 ~~l~~~ 594 (838)
......
T Consensus 368 ~~i~~~ 373 (436)
T PRK11889 368 IEIITN 373 (436)
T ss_pred HHHHHH
Confidence 444433
No 278
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.19 E-value=0.14 Score=59.43 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=53.8
Q ss_pred CceEEEEEEeCChHHHHHHHHh--ccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHh-hCCCCCeeeeH
Q psy12983 176 RRQTMLFSATTTAKTETLTKLA--LKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLK-KNHIGEIVAWH 251 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~--l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~-~~~~~~~iVF~ 251 (838)
+.|+++||||.++.+..-.... +. +|..+... ....++. |...+. .+....+..++. .....++||||
T Consensus 162 ~~~~l~lTAT~~~~~~~di~~~l~l~-~~~~~~~s-----~~r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 162 NVPIMALTATASPSVREDILRQLNLK-NPQIFCTS-----FDRPNLY--YEVRRKTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred CCceEEEecCCCHHHHHHHHHHcCCC-CCcEEeCC-----CCCCCcE--EEEEeCCccHHHHHHHHHHHhcCCCceEEEE
Confidence 5789999999999886544333 34 56543221 1112232 222222 234455556665 34445569995
Q ss_pred H---------hhhhcCCceeEEeeCCCChhh
Q psy12983 252 V---------LLLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 252 ~---------~~l~~~~~~~~~~hg~~~~~~ 273 (838)
+ ..|+..++.+..+||+++..+
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~e 264 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISA 264 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHH
Confidence 4 445677999999999998654
No 279
>PRK05642 DNA replication initiation factor; Validated
Probab=95.08 E-value=0.089 Score=54.95 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 542 KNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.+.+++|||++|.+... .+...+..+++.+..+...++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 34578999999987654 3556677777776554445666666544
No 280
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=95.06 E-value=0.058 Score=64.51 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=69.2
Q ss_pred ceEEEEEEeCChHHHHHHHHhccC-CCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh--
Q psy12983 177 RQTMLFSATTTAKTETLTKLALKK-EPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL-- 253 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~l~~-~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~-- 253 (838)
.++++||||.++.+..-....+.- ++..+ . . + ....++ +|..+...++...+..++......++||||++
T Consensus 163 ~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~-~-~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~ 235 (591)
T TIGR01389 163 VPRIALTATADAETRQDIRELLRLADANEF-I-T-S--FDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRK 235 (591)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-e-c-C--CCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 459999999999987644444431 34332 1 1 1 111222 33334455677777888877667789999644
Q ss_pred -------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccCCc
Q psy12983 254 -------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENAPA 301 (838)
Q Consensus 254 -------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (838)
.|...++.+...||+++.. .|+.+...+. +++--+..+....-|.+
T Consensus 236 ~~e~la~~L~~~g~~~~~~H~~l~~~--~R~~i~~~F~~g~~~vlVaT~a~~~GID 289 (591)
T TIGR01389 236 KVEELAERLESQGISALAYHAGLSNK--VRAENQEDFLYDDVKVMVATNAFGMGID 289 (591)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHH--HHHHHHHHHHcCCCcEEEEechhhccCc
Confidence 4566789999999998764 4544444333 34433444444444444
No 281
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=94.96 E-value=0.083 Score=58.92 Aligned_cols=96 Identities=13% Similarity=-0.030 Sum_probs=56.3
Q ss_pred CceEEEEEEeCChHHHHHHHHh--ccCCCEEEEEecC-----C------c------ccccccceEEEEECCcchHHHHHH
Q psy12983 176 RRQTMLFSATTTAKTETLTKLA--LKKEPVYIGVDDT-----K------E------EATVAGLEQGYVVCPSEKRFLLLF 236 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~--l~~~p~~i~i~~~-----~------~------~~~~~~i~q~~v~v~~~~K~~~L~ 236 (838)
..+.+++|||+++.+.+..... +. .|.. .+... + . ..+...+.+.+.. ....|...+.
T Consensus 181 ~~~~i~lSAT~~~~~~~~l~~~~~~~-~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~ 257 (357)
T TIGR03158 181 RRKFVFLSATPDPALILRLQNAKQAG-VKIA-PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELS 257 (357)
T ss_pred CCcEEEEecCCCHHHHHHHHhccccC-ceee-eecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHH
Confidence 4689999999999877665543 34 4432 12111 0 0 0111357777765 4444544443
Q ss_pred HHHh-------hCCCCCeeeeHHhhh---------hcC--CceeEEeeCCCChhhh
Q psy12983 237 TFLK-------KNHIGEIVAWHVLLL---------QVI--KIKVQTRIGKEDFVTS 274 (838)
Q Consensus 237 ~ll~-------~~~~~~~iVF~~~~l---------~~~--~~~~~~~hg~~~~~~~ 274 (838)
.+++ +...++++|||+++. +.. ++.+..+||.++..+.
T Consensus 258 ~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 258 ELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred HHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 3332 234578999976543 333 4678899999987654
No 282
>PRK00254 ski2-like helicase; Provisional
Probab=94.94 E-value=0.031 Score=68.42 Aligned_cols=74 Identities=14% Similarity=0.006 Sum_probs=49.4
Q ss_pred cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 102 TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
.+..|+++++||++ +..++++.. ..++.+.++| +.+.++...++.++..+ +.
T Consensus 111 ~~~~~~IiV~Tpe~------~~~ll~~~~-~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l---------------~~ 168 (720)
T PRK00254 111 WLGKYDIIIATAEK------FDSLLRHGS-SWIKDVKLVVADEIHLIGSYDRGATLEMILTHM---------------LG 168 (720)
T ss_pred hhccCCEEEEcHHH------HHHHHhCCc-hhhhcCCEEEEcCcCccCCccchHHHHHHHHhc---------------Cc
Confidence 35678999999987 444444332 3467777777 44455666666665555 45
Q ss_pred CceEEEEEEeCChHHHHHHHHhcc
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALK 199 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~ 199 (838)
..|++++|||++. ..+++. ++.
T Consensus 169 ~~qiI~lSATl~n-~~~la~-wl~ 190 (720)
T PRK00254 169 RAQILGLSATVGN-AEELAE-WLN 190 (720)
T ss_pred CCcEEEEEccCCC-HHHHHH-HhC
Confidence 6899999999975 466665 444
No 283
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.13 Score=56.17 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=74.0
Q ss_pred CCCCcHHHHHHHHHHHc----CC---CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 416 FTKMTEIQARTIPPLLE----GR---DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~----~~---dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+..++|||..++..+.+ ++ -.++.||.|.||+..+...+-..+.... .... -++. +
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~---~~~~----~c~~----------c 64 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP---DPAA----AQRT----------R 64 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC---CCCC----cchH----------H
Confidence 35689999999988763 32 5899999999999876554444332210 0000 0111 1
Q ss_pred HHHhhhcCCeEEEEe--CCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHH
Q psy12983 489 KELMKYHHHTYGLIM--GGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQ 566 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~--gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~ 566 (838)
+.+.....-.+..+. .+.... .....|.|-....+.+.+...+. ....+++||||||.|.... .+.+.+
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~--~g~~kV~iI~~ae~m~~~A-aNaLLK 135 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ--YGIAQVVIVDPADAINRAA-CNALLK 135 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc--cCCcEEEEeccHhhhCHHH-HHHHHH
Confidence 111111111222221 100000 00012222222223333333221 2457899999999986653 445555
Q ss_pred HHHHCCccceEEEEeeeccc
Q psy12983 567 IVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 567 il~~l~~~~qil~lSAT~~~ 586 (838)
+++.-+++..+++.|..+..
T Consensus 136 tLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 136 TLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred HhhCCCCCCeEEEEECChhh
Confidence 66666667777777765543
No 284
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.79 E-value=0.11 Score=55.06 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=55.7
Q ss_pred HHHHHHhcCCceEEEEccCCccCCCCCC--------ccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEecc---Cc
Q psy12983 683 TTFFQFCNAETGILLCTDVAARGLDIPA--------VDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP---EE 751 (838)
Q Consensus 683 ~i~~~F~~g~~~VLVaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~---~e 751 (838)
...+.|.+|+.+|+|.+++.++|+.+.+ -++-|...+|++....+|..||+.|.+...+-.|.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998753 345677889999999999999999974334444444433 34
Q ss_pred hHHHH
Q psy12983 752 LGFLR 756 (838)
Q Consensus 752 ~~~~~ 756 (838)
..+..
T Consensus 132 ~Rfas 136 (278)
T PF13871_consen 132 RRFAS 136 (278)
T ss_pred HHHHH
Confidence 44443
No 285
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.78 E-value=0.048 Score=64.53 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=65.5
Q ss_pred EEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC--CCCCeeeeHH------
Q psy12983 181 LFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN--HIGEIVAWHV------ 252 (838)
Q Consensus 181 LFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~--~~~~~iVF~~------ 252 (838)
-||||.+.+.+++...|.. +++.|.. .. .......+.++.++.++|...|..++... ...++|||++
T Consensus 413 GmTGTa~~~~~El~~~y~l-~vv~IPt--~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 413 GMTGTAREVAGELWSVYGL-PVVRIPT--NR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred cccCcChHHHHHHHHHHCC-CeEEeCC--CC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 5999999999999999988 7877543 21 22223556678888889999999988753 2467999954
Q ss_pred ---hhhhcCCceeEEeeCCCChh
Q psy12983 253 ---LLLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 253 ---~~l~~~~~~~~~~hg~~~~~ 272 (838)
..|...|+++..+||+++..
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~r 510 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAE 510 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHH
Confidence 44577899999999986533
No 286
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.77 E-value=0.094 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=18.0
Q ss_pred cCCCEEEEecCCCCchhhhHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
.+..+++.||+|+|||..+...+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35689999999999997664433
No 287
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.76 E-value=0.48 Score=53.95 Aligned_cols=122 Identities=21% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
++.+++.||||+|||.+....+...... ..+.++.++. |.+.-+.+ .++.+....++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-----~~g~~V~li~~D~~r~~a~e---qL~~~a~~~~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-----YGKKKVALITLDTYRIGAVE---QLKTYAKIMGIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEECCccHHHHHH---HHHHHHHHhCCceE----------
Confidence 4578999999999998766554443211 2344555443 33332222 23333222222221
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHH-CCccceEEEEeeecccch
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNL-LPKRRQTMLFSATTTAKT 588 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~-l~~~~qil~lSAT~~~~~ 588 (838)
++.+++.+...+.. +.+.++|+||.+-+..... ....+..++.. ..+....+.+|||.....
T Consensus 283 -----------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -----------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 22334444444432 2357899999986643221 23455555552 223345788999887543
No 288
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.72 E-value=0.079 Score=55.38 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=63.2
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCc-chHHHHHHHhc-CCcEEEcChHHHHHHHhcCcccccCC
Q psy12983 466 RNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGA-SRQAEAQKLAK-GINIIVATPGRLLDHLQNTPEFLYKN 543 (838)
Q Consensus 466 ~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~-~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~ 543 (838)
.+.+.+|||+.+-.=|.++.+.++.+... ...+.-++.-. ...++...+.. ..+|.||||+|+..++... .+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCccc
Confidence 45678999999887788888777776321 12223333333 55666666664 6899999999999999766 467899
Q ss_pred ceEEEEeCCCc
Q psy12983 544 LQCLIIDEADR 554 (838)
Q Consensus 544 l~lvViDEah~ 554 (838)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998764
No 289
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.2 Score=59.63 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEE
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLF 580 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~l 580 (838)
.+.+++||||+|+|....+ +.+.+.+..-+....+++.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4578999999999876544 3344455555555556655
No 290
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.19 Score=55.25 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHcC----CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEG----RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~----~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.++|||...+..+.+. .-.++.||.|.|||..+...+-..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 4589999999998764 3588999999999987655544443
No 291
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=94.52 E-value=0.12 Score=61.80 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred CceEEEEEEeCChHHHH-HHHH-hccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh
Q psy12983 176 RRQTMLFSATTTAKTET-LTKL-ALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL 253 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~-la~~-~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~ 253 (838)
..|+++||||.++.+.. +... .+. +|... +. . ....++ .|..+....+...+..++.....+++||||++
T Consensus 174 ~~~~v~lTAT~~~~~~~di~~~l~l~-~~~~~-~~--~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~t 245 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGLN-DPLIQ-IS--S--FDRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNS 245 (607)
T ss_pred CCcEEEEecCCChhHHHHHHHHhCCC-CeEEE-EC--C--CCCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECc
Confidence 47899999999998764 3332 244 56542 21 1 111223 33344444556667777777777889999644
Q ss_pred ---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccC
Q psy12983 254 ---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENA 299 (838)
Q Consensus 254 ---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (838)
.|+..++.+..+||+++.-+ |+...+.+. ++.--+..+....-|
T Consensus 246 r~~~e~la~~L~~~g~~v~~~Ha~l~~~~--R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 246 RAKVEDTAARLQSRGISAAAYHAGLDNDV--RADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCCCHHH--HHHHHHHHHCCCCCEEEEechhhcc
Confidence 45667899999999987643 444444443 344334444434333
No 292
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.21 Score=58.28 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....| +.+.+.+...|+.+.+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4578999999999876544 34445566666667676655
No 293
>PRK08116 hypothetical protein; Validated
Probab=94.43 E-value=0.36 Score=51.48 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
..+++.|++|+|||..+.. +.+.+.. .+..++++ +..++..++
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~------~~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIE------KGVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHH------cCCeEEEE-EHHHHHHHH
Confidence 3499999999999986543 3344433 24455554 444554443
No 294
>KOG0298|consensus
Probab=94.41 E-value=0.083 Score=64.96 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=91.2
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhc-----------cCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEE
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNL-----------KFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGL 501 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~-----------~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~ 501 (838)
|+++++.-..|.|||.+-+...+...-.. .......+.+|||+|. ++..||++++....... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56788888899999987554443321110 0111234568999996 67788888888765433 34443
Q ss_pred EeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccc-------------ccC-C-----ceEEEEeCCCcccccCcHH
Q psy12983 502 IMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEF-------------LYK-N-----LQCLIIDEADRILDIGFEE 562 (838)
Q Consensus 502 l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~-------------~~~-~-----l~lvViDEah~l~~~gf~~ 562 (838)
..|-.+..-......-.+|||++|+..|..-+...... ..+ . +=-|++|||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 33311111000112235899999999886555433111 000 0 11389999998765 345
Q ss_pred HHHHHHHHCCccceEEEEeeecccchHHHHH
Q psy12983 563 DMKQIVNLLPKRRQTMLFSATTTAKTETLTK 593 (838)
Q Consensus 563 ~~~~il~~l~~~~qil~lSAT~~~~~~~l~~ 593 (838)
...+++..++ ....-+.|+||..++..+..
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhhHH
Confidence 5555665554 35578899998876655433
No 295
>PLN03025 replication factor C subunit; Provisional
Probab=94.39 E-value=0.39 Score=52.67 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=24.6
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
..+++||||+|.+.... ...+...+...+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 46899999999987543 344555555555555555433
No 296
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.38 E-value=0.18 Score=58.63 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 421 EIQARTIPPLLE-----G----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 421 ~~Q~~ai~~i~~-----~----~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
|||.-.+..+.. + +.+++.-|=|.|||......++..+.- ....+..+++.+++++-|...++.++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~---~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL---DGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc---CCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 577777666651 2 458899999999998765554444432 1245678999999999999999999888
Q ss_pred hhh
Q psy12983 492 MKY 494 (838)
Q Consensus 492 ~~~ 494 (838)
...
T Consensus 78 i~~ 80 (477)
T PF03354_consen 78 IEA 80 (477)
T ss_pred HHh
Confidence 765
No 297
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.22 Score=52.67 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=35.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
++.++++.||+|+|||..+...+...+ . .|..+ +.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~------~g~sv-~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K------AGISV-LFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------cCCeE-EEEEHHHHHHHHHHHHh
Confidence 568999999999999987766555554 3 24444 45677788877664443
No 298
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.14 Score=56.13 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=29.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
.+.|+.||.|+|||..+-+.+-. .+....-+..+..=+.++...+++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~----------~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT----------TNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh----------hCCceEEeccccccHHHHHHHHHH
Confidence 47899999999999876554432 233455555555544444443333
No 299
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.30 E-value=0.15 Score=61.52 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|.+++.. ...+++|.|..|||||.+.+--+..++... ...+.++++++.|+..|..+.+++.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4799999999864 346789999999999998766665555431 12456899999999999999988877654
No 300
>PRK06893 DNA replication initiation factor; Validated
Probab=94.20 E-value=0.13 Score=53.56 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCceEEEEeCCCcccccC-cHHHHHHHHHHCCc-cceEEEEeeeccc
Q psy12983 542 KNLQCLIIDEADRILDIG-FEEDMKQIVNLLPK-RRQTMLFSATTTA 586 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~-~~qil~lSAT~~~ 586 (838)
.+.+++||||+|.+.... +...+..+++.... +.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 456899999999876432 44455666655543 3456777777654
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.19 E-value=0.22 Score=59.57 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
.+.+++||||+|+|....|. .+.++++.-+.+..+|+.|--
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEECC
Confidence 45789999999999775543 344455555566666665543
No 302
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.13 E-value=0.21 Score=57.57 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=26.7
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
..+++.||+|+|||..+...+-. +.. ...+..++++ +..++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~-~~~----~~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNY-ILE----KNPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHH----hCCCCeEEEE-EHHHHHHHH
Confidence 45899999999999765433333 322 0235566666 444554443
No 303
>PRK02362 ski2-like helicase; Provisional
Probab=94.05 E-value=0.07 Score=65.55 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=47.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
+..++++++||++ +..++++.+ ..+..+.++| +.+.++...++.++..+.. + +.+
T Consensus 111 l~~~~IiV~Tpek------~~~llr~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~------~------~~~ 171 (737)
T PRK02362 111 LGDNDIIVATSEK------VDSLLRNGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR------L------NPD 171 (737)
T ss_pred cCCCCEEEECHHH------HHHHHhcCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh------c------CCC
Confidence 4678999999998 545555433 2456777777 4455666666666554411 1 346
Q ss_pred ceEEEEEEeCChHHHHHHH
Q psy12983 177 RQTMLFSATTTAKTETLTK 195 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~ 195 (838)
.|++++|||++. .++++.
T Consensus 172 ~qii~lSATl~n-~~~la~ 189 (737)
T PRK02362 172 LQVVALSATIGN-ADELAD 189 (737)
T ss_pred CcEEEEcccCCC-HHHHHH
Confidence 899999999975 344443
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.03 E-value=0.25 Score=54.09 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=27.2
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
..++|||||+|.+........+..+++..+.+.++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999844334556666777766677666644
No 305
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.02 E-value=0.27 Score=48.15 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
...+++||||+|.|... -...+.+.+..-+.+..++++|..+..-...+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 46899999999998765 35666677777777788888777666543333
No 306
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.01 E-value=0.36 Score=62.59 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhh--HHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAF--LVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~--~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+++-|.+++..++.. +-++|.|..|+|||.+. ++.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-----~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-----SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-----ccCceEEEEechHHHHHHH
Confidence 6899999999999864 67999999999999763 2222322211 3456788899997766554
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.01 E-value=0.29 Score=52.29 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCC--CCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMP--RNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~--~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.+++++|+||-|||.+.-.-.-.+ ...... ..-+.+.+-+|...-....+..+-..+. ..+ ........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~----~~~~~~~~ 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APY----RPRDRVAK 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---ccc----CCCCCHHH
Confidence 589999999999997532211111 111111 1123455566766655555544443322 211 01111111
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc--HHHHHHHHHHCCcc--ceEEEE
Q psy12983 512 AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKR--RQTMLF 580 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~--~qil~l 580 (838)
.. .+..++++. -+++++||||.|.++.... ...+...++.+.+. ..++++
T Consensus 133 ~~-------------~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 133 LE-------------QQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HH-------------HHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 00 011223332 3478999999999876552 23333444554443 445544
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.97 E-value=0.27 Score=49.02 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=32.7
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
+++.||+|+|||..++--+...+ ..+..++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999987765555554 23667888764 34456665555544
No 309
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.95 E-value=0.15 Score=60.00 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.+.+++||||+|+|....+. .+.+.++.-+.++.+|+.|.-+..
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCChHh
Confidence 45789999999999766543 333445554556767776654443
No 310
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.91 E-value=0.26 Score=55.98 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=23.3
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
..+++.||+|+|||..+. .+...+... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~----~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN----NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh----CCCCcEEEEE
Confidence 357899999999997653 333333321 2356677764
No 311
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.90 E-value=0.19 Score=52.52 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=25.2
Q ss_pred ceEEEEeCCCcccccC-cHHHHHHHHHHCCc-c-ceEEEEeeecc
Q psy12983 544 LQCLIIDEADRILDIG-FEEDMKQIVNLLPK-R-RQTMLFSATTT 585 (838)
Q Consensus 544 l~lvViDEah~l~~~g-f~~~~~~il~~l~~-~-~qil~lSAT~~ 585 (838)
.++++|||+|.+.... +...+..+++.... + .++++ |++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCC
Confidence 4789999999986542 55566666655433 2 34554 55544
No 312
>PRK06921 hypothetical protein; Provisional
Probab=93.87 E-value=0.5 Score=50.35 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ 483 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q 483 (838)
+..+++.|++|+|||..+... ...+.. ..+..++++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai-a~~l~~-----~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA-ANELMR-----KKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH-HHHHhh-----hcCceEEEEE-HHHHHHH
Confidence 578999999999999765333 333322 1256666655 3444443
No 313
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.82 E-value=0.59 Score=51.29 Aligned_cols=45 Identities=29% Similarity=0.334 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+.++++.||||+|||..+...+-.++ . .+..|+++ +..+|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-D------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------CCCeEEEE-EHHHHHHHH
Confidence 357899999999999986544433333 2 35566664 444554443
No 314
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.78 E-value=0.39 Score=55.20 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
..+++.|++|+|||-.. .++...+.. ...+.+++++.. .++..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 45899999999999543 333333322 134566776555 455555444333200
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCc-cceEEEEeeecc
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPK-RRQTMLFSATTT 585 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~-~~qil~lSAT~~ 585 (838)
...+.+.+ .+.+.+++||||+|.+.... ....+..+++.+.. +.|+++.|-.++
T Consensus 195 ----------~~~~~~~~--------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ----------KEIEQFKN--------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ----------hHHHHHHH--------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 00011111 12456899999999886532 34555566655433 345655554444
No 315
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.70 E-value=0.22 Score=56.41 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=82.7
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH-HHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE-LSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~-La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
-.++.|..|||||.+...-++..+... ..+.+++++-|+.. |..-++..+.......++....-...... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 367899999999998877777666552 15678899989887 66667777777666555432111111100 00
Q ss_pred HHhc-CCcEEEcCh-HHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc--cceEEEEeeecccchH
Q psy12983 514 KLAK-GINIIVATP-GRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK--RRQTMLFSATTTAKTE 589 (838)
Q Consensus 514 ~l~~-~~~IvV~Tp-~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~--~~qil~lSAT~~~~~~ 589 (838)
.+.+ +..|++..- +...+ + .....+.++.+|||..+... .+..++..++. ....+.+|.+|.....
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred EecCCCeEEEeecccCChhH-h-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 0111 334555442 11111 1 11234689999999987543 44445444542 2224788989876444
Q ss_pred HHHHHHc
Q psy12983 590 TLTKLAL 596 (838)
Q Consensus 590 ~l~~~~l 596 (838)
-+...++
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 4444444
No 316
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.68 E-value=0.6 Score=56.48 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=15.9
Q ss_pred EEEEecCCCCchhhhHHHHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l 458 (838)
++|.|+||+|||.+.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 35999999999987533 34444
No 317
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.52 E-value=0.12 Score=60.85 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH-HHHHHHhhh
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF-GVLKELMKY 494 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~-~~l~~~~~~ 494 (838)
..+|+|.+.++.+... +.++++.++-+|||.+.+..+...+. .....++++.||.++|.+.. +.+..+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID------QDPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE------eCCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 6789999999887654 57999999999999865554443332 34567899999999999976 456665554
Q ss_pred cCCeEEEEeC----CcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 495 HHHTYGLIMG----GASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 495 ~~~~v~~l~g----g~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
.+..-..+.. ..........+. +..+.++.. .....+.-..++++++||+|.+..
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred CHHHHHHhCchhhcccCCchhheecC-CCEEEEEeC-------CCCcccccCCcCEEEEechhhccc
Confidence 4322112221 111111112222 333444331 111123345688999999999843
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.46 Score=53.11 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|.+....+. .+...+...+....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45689999999998754332 3333444444555566544
No 319
>PRK09183 transposase/IS protein; Provisional
Probab=93.44 E-value=0.64 Score=49.34 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ 483 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q 483 (838)
+.++.++++.||+|+|||..+...+.... ..+..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-------~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-------RAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-------HcCCeEEEEe-HHHHHHH
Confidence 45678999999999999976654443332 2355666653 3444443
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.39 E-value=0.56 Score=43.47 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.4
Q ss_pred EEEEecCCCCchhhhH
Q psy12983 436 LVGSAKTGSGKTLAFL 451 (838)
Q Consensus 436 vlv~apTGsGKTl~~~ 451 (838)
+++.||.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999997643
No 321
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.37 E-value=0.33 Score=55.76 Aligned_cols=72 Identities=25% Similarity=0.245 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 420 TEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
-+-|-++|.. .+++-++|+|..|||||.+++--+.-+++..+.. -.++.++|+.|.+.++.-+.+.+-+++.
T Consensus 214 QkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 214 QKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred hHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 3445555432 2456799999999999999876666666553322 3455699999999999988888877754
No 322
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.26 E-value=0.19 Score=60.84 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.+++-|++++.. .+..++|.|..|||||.+...-+..++.... -+..++++++.|+..|.++.+.+.....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999875 3567899999999999987777666664311 2356799999999999999988887653
No 323
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.39 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=17.5
Q ss_pred CEEEEecCCCCchhhhHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~ 456 (838)
.+++.||.|+|||.++.+.+-.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999887555443
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.23 E-value=0.26 Score=52.55 Aligned_cols=54 Identities=31% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
+..|.-+++.|++|+|||....-.+..... +.+..++|+.-- .-..++...+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~------~~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLIT------QHGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHH------hcCceEEEEEcc-cCHHHHHHHHHH
Confidence 445678999999999999765554444431 236678887632 223444444433
No 325
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.21 E-value=0.35 Score=58.76 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcC----CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc-CCccCCCCCCccEEE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYI----DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD-VAARGLDIPAVDWIV 715 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~----~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~-~~~~GiDip~v~~VI 715 (838)
.+.+++|.++|+.-+..+++.+++. ++++..+||+++..+|..++....+|+.+|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4668999999999988888777654 68899999999999999999999999999999996 455567889999988
Q ss_pred EeCC
Q psy12983 716 QYDP 719 (838)
Q Consensus 716 ~~d~ 719 (838)
....
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 6443
No 326
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.21 E-value=0.68 Score=60.95 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+++.|.+|+..++.+ +-++|.|..|+|||... ..+...+... ....+..++.++||---+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l--~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL--PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh--hcccCceEEEECCcHHHHHHH
Confidence 7899999999999875 56899999999999753 3333332210 113456788899998766543
No 327
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.18 E-value=0.75 Score=54.07 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
|+...+.. .++ ...+.+-.++..|-=.|||+... +++..+.. ...|.++++.+|.+.-++..++.++.+..
T Consensus 239 Fdi~~~s~---~~~-~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~----s~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 239 FNTPLFSD---AAV-RHFRQRATVFLVPRRHGKTWFLV-PLIALALA----TFRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred cCCccccH---HHH-HHhhccceEEEecccCCchhhHH-HHHHHHHH----hCCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 55544442 233 23355778899999999999765 55543332 13588999999999999999999988765
Q ss_pred hc--CCeEEEEeCCcchHHHHHHHhcC--CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHH
Q psy12983 494 YH--HHTYGLIMGGASRQAEAQKLAKG--INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVN 569 (838)
Q Consensus 494 ~~--~~~v~~l~gg~~~~~~~~~l~~~--~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~ 569 (838)
.. +..+....| ... .-.+.++ ..|.+++ . .+.....=..++++|||||+.+.+..+...+ -.+.
T Consensus 310 ~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaS------a-rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~ 377 (738)
T PHA03368 310 QWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFAS------S-HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN 377 (738)
T ss_pred hhcchhheeeecC-cEE---EEEecCCCccEEEEEe------c-cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh
Confidence 32 111111111 100 0011222 2455543 1 1111122346899999999998764333333 2222
Q ss_pred HCCccceEEEEeeecccc
Q psy12983 570 LLPKRRQTMLFSATTTAK 587 (838)
Q Consensus 570 ~l~~~~qil~lSAT~~~~ 587 (838)
..+.+++++|.|-+..
T Consensus 378 --~~n~k~I~ISS~Ns~~ 393 (738)
T PHA03368 378 --QTNCKIIFVSSTNTGK 393 (738)
T ss_pred --ccCccEEEEecCCCCc
Confidence 2378899999886653
No 328
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.56 Score=57.21 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEE
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLF 580 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~l 580 (838)
.+.+++||||+|+|....+ +.+.+++..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE
Confidence 4578999999999865433 4444455555556666664
No 329
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.09 E-value=0.5 Score=51.65 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHc----C---CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 419 MTEIQARTIPPLLE----G---RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~----~---~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.+|||+..+..+.+ | .-.++.||.|.||+..+...+-..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 47888888877653 3 3578999999999987765554443
No 330
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.08 E-value=0.49 Score=48.87 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCceEEEEeCCCcccccC-cHHHHHHHHHHCC-ccceEEEEeeecccc
Q psy12983 542 KNLQCLIIDEADRILDIG-FEEDMKQIVNLLP-KRRQTMLFSATTTAK 587 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~~~~~~il~~l~-~~~qil~lSAT~~~~ 587 (838)
...++++||.+|.+.+.. +...+..+++.+. .+.++++.|..+|..
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 467899999999987653 4556666666553 345677777666653
No 331
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.05 E-value=0.26 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=17.0
Q ss_pred CCEEEEecCCCCchhhhHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l 455 (838)
.++++.||.|.|||..+.+-+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHh
Confidence 3699999999999987655443
No 332
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.64 Score=54.99 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ ..+..++...+....+++.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 3568999999999876543 34455555555556566544
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.04 E-value=0.36 Score=50.08 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=25.3
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccce-EEEEeeecc
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ-TMLFSATTT 585 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q-il~lSAT~~ 585 (838)
..+++||||+|.+.... ...+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 35689999999876542 3444455544433333 466666654
No 334
>PF13173 AAA_14: AAA domain
Probab=93.04 E-value=0.75 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.2
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
.-.+|+|||+|.+.+ |...++.+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 346899999999865 567777777754 44566654443
No 335
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.02 E-value=0.4 Score=58.32 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+++-|++++.. ...+++|.|..|||||.+.+--+...+.... .....+++|+.|+..+.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68999999865 3568999999999999987777766664311 2356799999999999999998887654
No 336
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.91 E-value=0.6 Score=51.45 Aligned_cols=39 Identities=8% Similarity=0.326 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
...++|||||+|.+... ....+..++...+....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987643 3445556666555566666544
No 337
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.61 Score=53.82 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....| +.+...++.-++...+++.+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 5789999999999876543 33344444444555555544
No 338
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.85 E-value=0.77 Score=54.74 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ ..+.+.+...+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999999765433 33444555555666666655
No 339
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=0.96 Score=53.13 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ +.+...+...+....+++.|
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4678999999999876543 33444445555566666655
No 340
>PRK13767 ATP-dependent helicase; Provisional
Probab=92.80 E-value=0.12 Score=64.58 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=86.0
Q ss_pred ccccCCCeeeeCCCcccchhhhhhhccCCCCc--cccccchhe------eeccccccccccceEeeccccccccccCcCC
Q psy12983 101 FTLSNPSKLTHNDGQSHLEEHKLTHNDATPLL--VSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLT 172 (838)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~ 172 (838)
.+...|++++.||++ +..++.+ +.+ .+..++++| +++..+...++..+..+.. + .
T Consensus 142 ~l~~~p~IlVtTPE~------L~~ll~~-~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~------l----~ 204 (876)
T PRK13767 142 MLKKPPHILITTPES------LAILLNS-PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEE------L----A 204 (876)
T ss_pred HHhCCCCEEEecHHH------HHHHhcC-hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHH------h----c
Confidence 455689999999998 5555533 322 467788777 4433333333333332211 0 0
Q ss_pred CCCCceEEEEEEeCChHHHHHHHHhcc------CCCEEEEEecCCcccccccceEEE-------EECCcch----HHHHH
Q psy12983 173 SAERRQTMLFSATTTAKTETLTKLALK------KEPVYIGVDDTKEEATVAGLEQGY-------VVCPSEK----RFLLL 235 (838)
Q Consensus 173 ~p~~rQtlLFSAT~~~~v~~la~~~l~------~~p~~i~i~~~~~~~~~~~i~q~~-------v~v~~~~----K~~~L 235 (838)
+...|++++|||+++ .++++..... ..+..+ + .... ...+.... +...... ....+
T Consensus 205 -~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~i-v-~~~~---~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L 277 (876)
T PRK13767 205 -GGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEI-V-DARF---VKPFDIKVISPVDDLIHTPAEEISEALYETL 277 (876)
T ss_pred -CCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEE-E-ccCC---CccceEEEeccCccccccccchhHHHHHHHH
Confidence 346799999999975 3344432211 012221 1 1110 01111111 1111111 22334
Q ss_pred HHHHhhCCCCCeeeeHHhhh---------hc------CCceeEEeeCCCChhhhHHHHHHHHhc-cCCCcccceEEeccC
Q psy12983 236 FTFLKKNHIGEIVAWHVLLL---------QV------IKIKVQTRIGKEDFVTSVRNVLAAHYK-DQPVGLGGVILIENA 299 (838)
Q Consensus 236 ~~ll~~~~~~~~iVF~~~~l---------~~------~~~~~~~~hg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (838)
..+++. .+++||||++.- .. .+..+...||+++.- .|....+.+. ++.--+..+.+++-|
T Consensus 278 ~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~--~R~~ve~~fk~G~i~vLVaTs~Le~G 353 (876)
T PRK13767 278 HELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE--VRLEVEEKLKRGELKVVVSSTSLELG 353 (876)
T ss_pred HHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH--HHHHHHHHHHcCCCeEEEECChHHhc
Confidence 444433 468999986543 21 246799999998754 4444444443 344444445555555
Q ss_pred Cc
Q psy12983 300 PA 301 (838)
Q Consensus 300 ~~ 301 (838)
.+
T Consensus 354 ID 355 (876)
T PRK13767 354 ID 355 (876)
T ss_pred CC
Confidence 54
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.80 E-value=0.82 Score=52.49 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
..+++.||+|+|||-.+...+ ..+.. ...+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~-~~l~~----~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIG-NYVVQ----NEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHH-HHHHH----hCCCCeEEEEEH
Confidence 358999999999997654333 33322 123556777653
No 342
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.70 E-value=0.27 Score=59.53 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC----C-CCeEE-ecCCCChhHHHHHHHHHhcCCceEEEEccCCc
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI----D-LPVMC-IHGKQKQMKRTTTFFQFCNAETGILLCTDVAA 703 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~----~-~~v~~-lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~ 703 (838)
.-.++.+.-...++++++.++|..-+.++++.|... + ..+.. |||.|+..+++.++++|.+|..+|||+|+.+-
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 444555555556789999999999999888888765 2 33333 99999999999999999999999999997543
Q ss_pred -cCCC-CC--CccEEEEeCCC------CCHHHHHHHhc
Q psy12983 704 -RGLD-IP--AVDWIVQYDPP------DDPKEYIHRVG 731 (838)
Q Consensus 704 -~GiD-ip--~v~~VI~~d~p------~s~~~y~Qr~G 731 (838)
.-.| +. ..++|+..|.. ++........|
T Consensus 193 ~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 193 SKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred HhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 2221 12 34677766643 34444444444
No 343
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=0.56 Score=51.66 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 419 MTEIQARTIPPLLE--G---RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~--~---~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
++|||...+..+.. + .-.++.||.|.||+..+...+-..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 47888888888764 2 3688999999999987755554433
No 344
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.65 E-value=0.62 Score=55.08 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=25.8
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ +.+...+...+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 5678999999999876543 33444555555556566555
No 345
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.64 E-value=0.53 Score=57.91 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|+|....+ +.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 5678999999999976543 44555566656666666654
No 346
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.52 E-value=0.61 Score=56.60 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=65.8
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCC
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~ 719 (838)
.++++||.++++.-+..+++.|++. +..+..+||+++..+|.+.+.+..+|+.+|+|+|.... -+.+.++.+||..+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 4678999999999999999999764 78899999999999999999999999999999996432 255678888886553
No 347
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.51 E-value=0.26 Score=60.39 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|++++.. ....++|.|..|||||.+...-+..++.... -+..++|+++.|+..|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 3468999999999999987666666554311 2456799999999999999998888754
No 348
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.48 E-value=2.4 Score=50.19 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHH---HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy12983 418 KMTEIQARTIPPL---LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494 (838)
Q Consensus 418 ~~~~~Q~~ai~~i---~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~ 494 (838)
-+.|.=.+=|+.+ .+.+-.++.+|=|-|||.+..+.+..++.. .+.+++|.+|...-++++++.++..+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 3444444444443 345678899999999998866555544321 3678999999999999999888887763
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.47 E-value=1.4 Score=50.22 Aligned_cols=127 Identities=19% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC--CHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP--TRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P--t~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
..++++|++|+|||.++...+..+ .. .+.+++++.. .+.-+.+ .++.+....++.+........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L-~~------~g~kV~lV~~D~~R~aa~e---QL~~la~~~gvp~~~~~~~~d---- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYF-KK------KGLKVGLVAADTYRPAAYD---QLKQLAEKIGVPFYGDPDNKD---- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-HH------cCCeEEEecCCCCCHHHHH---HHHHHHHHcCCcEEecCCccC----
Confidence 468899999999998876555433 22 2445555542 2332332 233333333333211111111
Q ss_pred HHHHhcCCcEEEcChHH-HHHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchH
Q psy12983 512 AQKLAKGINIIVATPGR-LLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTE 589 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~-l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~ 589 (838)
|.. +.+.+... ...++||||.+-+.... ..-.++..+.....+..-++.++||......
T Consensus 162 --------------~~~i~~~al~~~-----~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av 222 (437)
T PRK00771 162 --------------AVEIAKEGLEKF-----KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK 222 (437)
T ss_pred --------------HHHHHHHHHHHh-----hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH
Confidence 111 12222221 22378999999554322 2345556666666666678888888765433
Q ss_pred HHHH
Q psy12983 590 TLTK 593 (838)
Q Consensus 590 ~l~~ 593 (838)
....
T Consensus 223 ~~a~ 226 (437)
T PRK00771 223 NQAK 226 (437)
T ss_pred HHHH
Confidence 3333
No 350
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.46 E-value=0.59 Score=60.62 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
++|+-|+++|.. .+++++|.|..|||||.+.+--++..+... .+..++++++=|+.-|.++.+++.+.+...-.
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 368999999973 688999999999999998877777766431 22356999999999999999888876543211
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccC-CceEEEEeCCCc
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYK-NLQCLIIDEADR 554 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~-~l~lvViDEah~ 554 (838)
. ........+.+..-...-|+|...+...+.+.....+. +-.+=|.||...
T Consensus 75 ~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 Q------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred c------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00111111222223456788888775444332211100 113345776654
No 351
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.42 E-value=0.7 Score=54.92 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ +.+...+...+.+..+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEEEEe
Confidence 5678999999999876433 34455555555566666555
No 352
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.39 E-value=0.64 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
+.++++||.|+|||.++.+.+-..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999998876655443
No 353
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.37 E-value=0.54 Score=54.87 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=64.6
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeC
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYD 718 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d 718 (838)
.++++||.++++.-+..+++.|++. +..+..+||+++..+|.+...+..+|+.+|+|+|..+-. ..++++.+||...
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 4678999999999999999999764 778999999999999999999999999999999964322 4567788888544
No 354
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.26 E-value=0.29 Score=59.92 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|++++.. ....++|.|..|||||.+...-+..++.... -+..++|+|+-|+..|.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 3468999999999999987666666554311 2456799999999999999998888754
No 355
>PTZ00293 thymidine kinase; Provisional
Probab=92.25 E-value=0.61 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=27.6
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
|+-.++.||++||||.-.+..+.... ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~-------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT-------YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH-------HcCCceEEEEecc
Confidence 45568999999999976555444333 2467788888854
No 356
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.16 E-value=0.99 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHH----cC-CCEEEEecCCCCchhhhH
Q psy12983 418 KMTEIQARTIPPLL----EG-RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~-~dvlv~apTGsGKTl~~~ 451 (838)
.+++.+.+++..+. .+ ..+++.||+|+|||..+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 56667777776653 22 358899999999997654
No 357
>KOG2028|consensus
Probab=92.16 E-value=0.48 Score=51.17 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
...|++||.|+|||..+-+.+-.. ....-+.+=+.-|.+-.++..+.+++....
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts-------k~~SyrfvelSAt~a~t~dvR~ife~aq~~------------------- 216 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS-------KKHSYRFVELSATNAKTNDVRDIFEQAQNE------------------- 216 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc-------CCCceEEEEEeccccchHHHHHHHHHHHHH-------------------
Confidence 479999999999997654433221 123344566666666666555544442110
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHH
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTK 593 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~ 593 (838)
. ...++-.++.|||+|++ ...-+.++--.-.+-.+++..||-.+....+..
T Consensus 217 ----------------~--------~l~krkTilFiDEiHRF-----NksQQD~fLP~VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 217 ----------------K--------SLTKRKTILFIDEIHRF-----NKSQQDTFLPHVENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred ----------------H--------hhhcceeEEEeHHhhhh-----hhhhhhcccceeccCceEEEecccCCCccchhH
Confidence 0 01123367999999994 333332221111345688899997765555544
Q ss_pred HHc
Q psy12983 594 LAL 596 (838)
Q Consensus 594 ~~l 596 (838)
..+
T Consensus 268 aLl 270 (554)
T KOG2028|consen 268 ALL 270 (554)
T ss_pred HHH
Confidence 444
No 358
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.09 E-value=0.64 Score=45.22 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=39.7
Q ss_pred CCceEEEEeCCCcccccCc--HHHHHHHHHHCCccceEEEEeeecccchHHHHH
Q psy12983 542 KNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKRRQTMLFSATTTAKTETLTK 593 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~ 593 (838)
..+++||+||+=.....++ .+.+..+++..|....+++.+-.+++...+++.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 5689999999988777773 467777888888888888888777765555444
No 359
>KOG1133|consensus
Probab=92.05 E-value=0.2 Score=58.07 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=38.5
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHh
Q psy12983 414 MGFTKMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYN 460 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~ 460 (838)
|+| +|+.+|.+.+..+. +|+-.|..+|||+|||+..+=.++..+..
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 456 89999999888754 58999999999999999887777777654
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.04 E-value=2.2 Score=49.47 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQ 509 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~ 509 (838)
.++.+.+.||||+|||..+...+...... ..+.++.++. +.+.-+.++ ++.+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-----~~gkkVaLIdtDtyRigA~EQ---Lk~ya~iLgv~v~~-------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-----HAPRDVALVTTDTQRVGGREQ---LHSYGRQLGIAVHE-------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCceEEEecccccccHHHH---HHHhhcccCceeEe--------
Confidence 35678899999999998765444433222 2234444443 233333222 23322222222211
Q ss_pred HHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 510 AEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 510 ~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
+.+++.+...+.. +.+.++|+||.+=+..... ....+..+... .....++.++++...
T Consensus 413 -------------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~ 471 (559)
T PRK12727 413 -------------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHF 471 (559)
T ss_pred -------------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCCh
Confidence 1123344444432 2457899999997643221 12223333222 234567888888753
No 361
>PHA02558 uvsW UvsW helicase; Provisional
Probab=91.97 E-value=0.28 Score=57.38 Aligned_cols=45 Identities=18% Similarity=0.004 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhC--CCCCeeee---------HHhhhhcCCceeEEeeCCCChhhh
Q psy12983 230 KRFLLLFTFLKKN--HIGEIVAW---------HVLLLQVIKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 230 ~K~~~L~~ll~~~--~~~~~iVF---------~~~~l~~~~~~~~~~hg~~~~~~~ 274 (838)
.|...+..++... ...+++|| +...|+..++++..+||+++..+.
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR 383 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDR 383 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 3444444444322 23456666 345567779999999999986653
No 362
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.94 E-value=0.89 Score=45.32 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA 512 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~ 512 (838)
++=.++.||++||||.-.+..+...- ..+.++++..|-.. .+. +........|.+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~-------~~g~~v~vfkp~iD----------~R~---~~~~V~Sr~G~~~---- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYK-------EAGMKVLVFKPAID----------TRY---GVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHH-------HcCCeEEEEecccc----------ccc---ccceeeeccCCcc----
Confidence 34468999999999986444443332 35788899888532 111 1111111122221
Q ss_pred HHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 513 QKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 513 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
.-++|-.+..+.+.+...... ..++.|.|||||-+..
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~--~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEK--PPVDCVLIDEAQFFDE 96 (201)
T ss_pred ------cceecCChHHHHHHHHhcccC--CCcCEEEEehhHhCCH
Confidence 245666667777766654211 1278999999998443
No 363
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.79 E-value=0.88 Score=49.67 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHHc----C---CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE----G---RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----~---~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.++|||...+..+.+ + .-.++.||.|.||+..+...+-..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 468888888887653 3 3689999999999987655554443
No 364
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.77 E-value=0.44 Score=56.11 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCceEEEEeCCCcccccC-cHHHHHHHHHHCCc-cceEEEEeeeccc
Q psy12983 542 KNLQCLIIDEADRILDIG-FEEDMKQIVNLLPK-RRQTMLFSATTTA 586 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~-~~qil~lSAT~~~ 586 (838)
.++++|||||+|.+.... ....+..+++.+.. +.++++.|-..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 457899999999986643 34555566665544 4566665544443
No 365
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.76 E-value=0.9 Score=53.98 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=26.4
Q ss_pred cCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 541 YKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 541 ~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
+.+.+++||||+|++....+ +.+...++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 35678999999999875433 33444455555666666655
No 366
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.74 E-value=0.67 Score=53.15 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=28.5
Q ss_pred CCceEEEEeCCCcccccC-cHHHHHHHHHHCC-ccceEEEEeeecccch
Q psy12983 542 KNLQCLIIDEADRILDIG-FEEDMKQIVNLLP-KRRQTMLFSATTTAKT 588 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~~~~~~il~~l~-~~~qil~lSAT~~~~~ 588 (838)
.+.++++|||+|.+.... ....+..+++.+. ...++++.|.+.+...
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 456899999999987643 3445555554432 3456666555545433
No 367
>KOG0701|consensus
Probab=91.71 E-value=0.1 Score=66.85 Aligned_cols=99 Identities=21% Similarity=0.390 Sum_probs=79.9
Q ss_pred HhcCCCeEEEEecchhhHHHHHHHhhcCC-CCeEEecCCCC-----------hhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 638 KKNRKKKVMVFFSSCMSVKFHHELLNYID-LPVMCIHGKQK-----------QMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 638 ~~~~~~kvIIF~~t~~~~~~l~~~L~~~~-~~v~~lhg~m~-----------~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
+....-..++|++.+..+....+.+++.. ..+..+.|.+. +..+.+++..|...++.+|++|.++..|
T Consensus 288 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~ 367 (1606)
T KOG0701|consen 288 EKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEG 367 (1606)
T ss_pred HhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 33333466899999998888888887652 23334555442 2236779999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 706 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 706 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
+|++.++.++.++.|.....|+|+.||+-+.
T Consensus 368 ~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 368 VDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred cchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999999998775
No 368
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=1.5 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCEEEEecCCCCchhhhHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
+-+|++||.|+|||.++-+.+-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999887655533
No 369
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=1.2 Score=48.81 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHcC-----CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 419 MTEIQARTIPPLLEG-----RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~-----~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.+|||+..+..+... ...++.||.|.|||..+...+-..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 378899988887742 3589999999999987765554443
No 370
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.57 E-value=0.57 Score=49.78 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.1
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
.++++.||+|+|||..+-..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 478999999999998764443
No 371
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.44 E-value=1.7 Score=49.12 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 372
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.40 E-value=0.064 Score=53.04 Aligned_cols=125 Identities=23% Similarity=0.210 Sum_probs=53.2
Q ss_pred EEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh
Q psy12983 437 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA 516 (838)
Q Consensus 437 lv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~ 516 (838)
++.|+-|-|||.+.-+.+...+. ....+++|.+|+.+-++..++.+...+...+.+..... ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccccccc
Confidence 57899999999765444433221 22357999999999888888776665443333320000 0000000111
Q ss_pred cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 517 KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 517 ~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
++..|-+..|+.+... -...+++|||||=.+. .+.+..++.. ...+.||.|...
T Consensus 72 ~~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp -CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBSS
T ss_pred ccceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeeccc
Confidence 2456677777665321 1234789999998753 2344444432 335677888764
No 373
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.36 E-value=0.63 Score=51.63 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC-CHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP-TRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P-t~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
++.+.+.||||-|||.+..-.+...... .+..+..||-.- +|-=|..+. +.++.-.++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~----~~~~kVaiITtDtYRIGA~EQL---k~Ya~im~vp~~----------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML----KKKKKVAIITTDTYRIGAVEQL---KTYADIMGVPLE----------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh----ccCcceEEEEeccchhhHHHHH---HHHHHHhCCceE-----------
Confidence 6789999999999999866555544422 122333444443 333344433 333333344433
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEEEeeecccc
Q psy12983 512 AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAK 587 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~ 587 (838)
++-+|.-|...+.. +++.++|.||=+=+-.... ...+++.++....+---.+.+|||....
T Consensus 265 ----------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 265 ----------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred ----------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 34445445444332 3556788888776532221 4455666666554445678889987653
No 374
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.32 E-value=1.2 Score=52.21 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++....+ +.+...+...+....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 4668999999999876533 34445555555566666655
No 375
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.29 E-value=1.6 Score=52.34 Aligned_cols=142 Identities=22% Similarity=0.253 Sum_probs=84.8
Q ss_pred CcHHHHHHH---HHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 419 MTEIQARTI---PPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 419 ~~~~Q~~ai---~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|..|.+++ ..+++. +-+++.|+-|=|||.+.=+.+...... ....+++|.+|+.+-++..+..+.+-+.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~-----~~~~~iiVTAP~~~nv~~Lf~fa~~~l~ 286 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL-----AGSVRIIVTAPTPANVQTLFEFAGKGLE 286 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh-----cCCceEEEeCCCHHHHHHHHHHHHHhHH
Confidence 355555544 445543 368999999999998876666333222 1146899999999999999888887777
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
..+............. ...-.+...|=+-+|.... ..-+++|||||=.+- .+.+..++..
T Consensus 287 ~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~~l~~~--- 346 (758)
T COG1444 287 FLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLHKLLRR--- 346 (758)
T ss_pred HhCCccccccccccce--eeecCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHHHHHhh---
Confidence 6655432221110000 0000112335555555442 114789999997653 3455555554
Q ss_pred cceEEEEeeeccc
Q psy12983 574 RRQTMLFSATTTA 586 (838)
Q Consensus 574 ~~qil~lSAT~~~ 586 (838)
.+.++||.|+..
T Consensus 347 -~~rv~~sTTIhG 358 (758)
T COG1444 347 -FPRVLFSTTIHG 358 (758)
T ss_pred -cCceEEEeeecc
Confidence 345888888764
No 376
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.27 E-value=0.61 Score=56.20 Aligned_cols=79 Identities=10% Similarity=0.177 Sum_probs=66.4
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcC----CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC-CccCCCCCCccEEE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYI----DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV-AARGLDIPAVDWIV 715 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~----~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~-~~~GiDip~v~~VI 715 (838)
.+.++++.++|+.-+..+++.+++. ++++..+||+++..+|..+++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4668999999999988888777653 789999999999999999999999999999999964 44567888889888
Q ss_pred EeCC
Q psy12983 716 QYDP 719 (838)
Q Consensus 716 ~~d~ 719 (838)
.-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 5443
No 377
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.22 E-value=5 Score=42.76 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC--CH-HHHHHHHHHHHHHhhhcCCeEEEEeCCcch
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP--TR-ELSMQTFGVLKELMKYHHHTYGLIMGGASR 508 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P--t~-~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~ 508 (838)
.+..+.+.+++|+|||..+...+.... . .+..+.++.- .+ ..+.|+. .+....++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~----------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-G------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGF----------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-H------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCc-----------
Confidence 346789999999999987665544432 1 2344444432 22 3444443 22222222
Q ss_pred HHHHHHHhcCCcEEE-cChHHHHHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 509 QAEAQKLAKGINIIV-ATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 509 ~~~~~~l~~~~~IvV-~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
++.. .++..+.+.+.... ...+.++|+||-+=+.... ....++..++....+...++.+|||...
T Consensus 132 -----------~~~~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 -----------EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred -----------eEEecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 2222 24444444332211 1135789999999765322 1234444555554455557789998654
Q ss_pred -chHHHHHH
Q psy12983 587 -KTETLTKL 594 (838)
Q Consensus 587 -~~~~l~~~ 594 (838)
........
T Consensus 199 ~d~~~~~~~ 207 (270)
T PRK06731 199 KDMIEIITN 207 (270)
T ss_pred HHHHHHHHH
Confidence 33344443
No 378
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.20 E-value=1.3 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=18.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.++++.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999764 3344444
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.15 E-value=0.45 Score=47.59 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=79.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCC-----c
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGG-----A 506 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg-----~ 506 (838)
....+++..++|.|||.+++--++.++ ..|.+|+++-=.+.-.. ..+...+....++.+.....+ .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~-------g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV-------GHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWETQ 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH-------HCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccCC
Confidence 456899999999999999988888877 34778877653332100 011111111112222211111 0
Q ss_pred chHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc--HHHHHHHHHHCCccceEEEEeeec
Q psy12983 507 SRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKRRQTMLFSATT 584 (838)
Q Consensus 507 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~~qil~lSAT~ 584 (838)
...+... .....++.... .+.-..+++||+||+=...+.|+ ...+..+++..|+...+|+..-.+
T Consensus 92 ~~~e~~~-----------~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 92 DRERDIA-----------AAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CcHHHHH-----------HHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1111110 01111222111 12235689999999998888884 466777788777777788777777
Q ss_pred ccchHHHHHH
Q psy12983 585 TAKTETLTKL 594 (838)
Q Consensus 585 ~~~~~~l~~~ 594 (838)
++...+++..
T Consensus 159 p~~Lie~ADl 168 (191)
T PRK05986 159 PRELIEAADL 168 (191)
T ss_pred CHHHHHhCch
Confidence 7655555443
No 380
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.13 E-value=1.1 Score=53.90 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcC-C-CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCC
Q psy12983 627 EKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYI-D-LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVA 702 (838)
Q Consensus 627 ~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~-~-~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~ 702 (838)
..|.+..+.+++.. .++++||.++....+..+.+.|++. + ..+..+|++++..+|.+.+.+..+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666666542 5778999999999999999999865 4 679999999999999999999999999999999654
Q ss_pred ccCCCCCCccEEEEeCC
Q psy12983 703 ARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 703 ~~GiDip~v~~VI~~d~ 719 (838)
. =.-+++...||..+-
T Consensus 251 v-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 251 V-FAPVEDLGLVAIWDD 266 (665)
T ss_pred E-EeccCCCCEEEEEcC
Confidence 3 245667788886553
No 381
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=0.72 Score=54.78 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+++++||||+|+|....|. .+...+...+....+++.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 45789999999998765433 2333333334455555544
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.02 E-value=3.1 Score=44.43 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
+-+++.||+|+|||.+....+.... ..+.+++++. +.|.-+.++...+.+ ..++.+.....+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~-------~~g~~V~li~~D~~r~~a~~ql~~~~~---~~~i~~~~~~~~~d---- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK-------KQGKSVLLAAGDTFRAAAIEQLEEWAK---RLGVDVIKQKEGAD---- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-------hcCCEEEEEeCCCCCHHHHHHHHHHHH---hCCeEEEeCCCCCC----
Confidence 4577889999999988766654432 2355666655 344444443333333 23333221111111
Q ss_pred HHHHhcCCcEEEcChHHH-HHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCC------ccceEEEEeee
Q psy12983 512 AQKLAKGINIIVATPGRL-LDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLP------KRRQTMLFSAT 583 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l-~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~------~~~qil~lSAT 583 (838)
|... .+.+.. ...+++++||||=+-+.... ....++..+..... +.-.++.++||
T Consensus 139 --------------p~~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 --------------PAAVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred --------------HHHHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 1111 111111 11245788999988775432 23445555555544 45568888998
Q ss_pred cccc
Q psy12983 584 TTAK 587 (838)
Q Consensus 584 ~~~~ 587 (838)
....
T Consensus 202 ~~~~ 205 (272)
T TIGR00064 202 TGQN 205 (272)
T ss_pred CCHH
Confidence 6543
No 383
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.93 E-value=0.72 Score=48.21 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=27.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
.|.-++|.|++|+|||...+--+.+.... .+..++|++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~------~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK------QGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCceEEEe
Confidence 45678999999999997665555554422 266788887
No 384
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.83 E-value=1.3 Score=53.63 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC-C-HHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP-T-RELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P-t-~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
++-+.+.||||+|||.+....+-..... ..++++.++.- + +.=+. +.++.+....++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-----~G~kkV~lit~Dt~RigA~---eQL~~~a~~~gvpv----------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-----EGADQLALLTTDSFRIGAL---EQLRIYGRILGVPV----------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-----cCCCeEEEecCcccchHHH---HHHHHHHHhCCCCc-----------
Confidence 4557899999999998765555433222 22235544442 2 21122 22333333333322
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.++.+|..+.+.+... ++.++|+||=+=+..... ....+..+.....+...++.+|||...
T Consensus 246 ----------~~~~~~~~l~~al~~~-----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~ 307 (767)
T PRK14723 246 ----------HAVKDAADLRFALAAL-----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG 307 (767)
T ss_pred ----------cccCCHHHHHHHHHHh-----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH
Confidence 1223555554444432 345788888776543221 223333333333445567778887653
No 385
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.72 E-value=2.6 Score=45.89 Aligned_cols=38 Identities=13% Similarity=0.373 Sum_probs=24.7
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
..++|+|||+|.+.... ...+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999985532 344555555555566666544
No 386
>PRK04195 replication factor C large subunit; Provisional
Probab=90.51 E-value=1.3 Score=51.46 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 387
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.50 E-value=1.2 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.219 Sum_probs=18.2
Q ss_pred CEEEEecCCCCchhhhHHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
.++++||.|+|||.++...+-..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999876655443
No 388
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.44 E-value=0.6 Score=51.04 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
...++|||||||.|... -...+...+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56789999999998663 34455555555555565665554
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.43 E-value=3.5 Score=46.82 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=65.2
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA 512 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~ 512 (838)
-+.++|++|+|||.++.-.+..+ . ..+.+++++. |.|.-|.++.+.+.+ ..++.+.....+.+.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l-~------~~G~kV~lV~~D~~R~aA~eQLk~~a~---~~~vp~~~~~~~~dp~~i~ 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYY-Q------RKGFKPCLVCADTFRAGAFDQLKQNAT---KARIPFYGSYTESDPVKIA 171 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-H------HCCCCEEEEcCcccchhHHHHHHHHhh---ccCCeEEeecCCCCHHHHH
Confidence 47899999999998765544432 2 2355666554 345545444433333 2344433222222211100
Q ss_pred HHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 513 QKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 513 ~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
.+.+... .-...++||||=+-+.... ..-.++..+.....+...++.++||........
T Consensus 172 -----------------~~~l~~~---~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 172 -----------------SEGVEKF---KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred -----------------HHHHHHH---HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 0011110 0134677888887664332 133455555555555666778888876544444
Q ss_pred HH
Q psy12983 592 TK 593 (838)
Q Consensus 592 ~~ 593 (838)
+.
T Consensus 232 a~ 233 (429)
T TIGR01425 232 AK 233 (429)
T ss_pred HH
Confidence 43
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.43 E-value=0.95 Score=51.58 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.1
Q ss_pred CCEEEEecCCCCchhhhHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp 453 (838)
..+++.||+|+|||..+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37899999999999765443
No 391
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.39 E-value=0.54 Score=48.68 Aligned_cols=134 Identities=18% Similarity=0.158 Sum_probs=65.9
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc-----CCeEEEEeCCc
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH-----HHTYGLIMGGA 506 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~-----~~~v~~l~gg~ 506 (838)
.|..+++.|++|+|||..++-.+.+.+.+ .+.+++|++- .+-..++.+.++.+.-.. .-.........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccc
Confidence 34679999999999998766666555422 1567788773 333455555555432100 00111111110
Q ss_pred chHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc----CcHHHHHHHHHHCCccceEEEEee
Q psy12983 507 SRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI----GFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 507 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~----gf~~~~~~il~~l~~~~qil~lSA 582 (838)
..... . -..++.+...+... +.-.+.+.+|||-...+... .++..+..+...++..-.+.++++
T Consensus 91 ~~~~~--------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 91 ERIGW--------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGST---------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccc--------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 00000 0 12233333333221 11112378999998877221 155566666666655555666666
Q ss_pred ec
Q psy12983 583 TT 584 (838)
Q Consensus 583 T~ 584 (838)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 392
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.37 E-value=1.7 Score=45.31 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=33.4
Q ss_pred HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 431 LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
-.+.-+++.|++|+|||..++..+...+ .++.++++++.. +-..+..+.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-------~~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-------QNGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-------hCCCcEEEEeCC-CCHHHHHHHHHH
Confidence 3567899999999999987555555443 235677888743 333444444433
No 393
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.37 E-value=0.38 Score=47.91 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=28.6
Q ss_pred HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 431 LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+++++++.||+|+|||..+...+-.++. .+..++++ +..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEe-ecCceeccc
Confidence 35689999999999999887655555442 35556664 555555543
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.36 E-value=1.6 Score=48.42 Aligned_cols=120 Identities=14% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
++.+++.||+|+|||......+.... . .+.++.++. |.+.=+.. .|+.+....++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~-~------~g~~V~lItaDtyR~gAve---QLk~yae~lgvpv~---------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL-K------QNRTVGFITTDTFRSGAVE---QFQGYADKLDVELI---------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H------cCCeEEEEeCCccCccHHH---HHHHHhhcCCCCEE----------
Confidence 46788999999999987665554432 2 244554444 33322222 22333322222221
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
+..+|+.+.+.+.... ..++.++|+||=+=+.-.. .....+..+.....+..-++.+|||..
T Consensus 266 -----------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 -----------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -----------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 2234555544333211 1145688999988664322 133444555554444444556676544
No 395
>KOG0991|consensus
Probab=90.33 E-value=0.55 Score=47.73 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
.+.+.||+||||.|-+. -...+++.+....+..++.+...+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999997654 456666666666555555554443
No 396
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=90.30 E-value=0.96 Score=61.01 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhH---HHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFL---VPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~---lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+++.|.+|+..++.+ +-++|.|..|+|||.... -++.+.. . ..+..++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~-----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E-----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H-----hcCCeEEEEeChHHHHHHH
Confidence 7899999999998865 457889999999997641 2222322 1 3467899999997766554
No 397
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.29 E-value=1.2 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.218 Sum_probs=18.6
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
...|++||.|.|||.++.+.+-..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999876655443
No 398
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.9 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=16.4
Q ss_pred CEEEEecCCCCchhhhHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l 455 (838)
-+++.||.|+|||.++...+-
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 359999999999988654433
No 399
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.19 E-value=1.3 Score=52.05 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=71.3
Q ss_pred hHHHHHHHHHH-hcCCCeEEEEecchhhHH----HHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc-C
Q psy12983 628 KRFLLLFTFLK-KNRKKKVMVFFSSCMSVK----FHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD-V 701 (838)
Q Consensus 628 ~k~~~l~~~l~-~~~~~kvIIF~~t~~~~~----~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~-~ 701 (838)
+-..+++..+. -..+.++....+|.--|+ .+.+.|...+++|..+.|.+....|++++.+..+|+++++|.|- .
T Consensus 296 KTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 296 KTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 33344444443 456789999999965554 45555556699999999999999999999999999999999996 4
Q ss_pred CccCCCCCCccEEEEeC
Q psy12983 702 AARGLDIPAVDWIVQYD 718 (838)
Q Consensus 702 ~~~GiDip~v~~VI~~d 718 (838)
+...+++.+...||...
T Consensus 376 iQd~V~F~~LgLVIiDE 392 (677)
T COG1200 376 IQDKVEFHNLGLVIIDE 392 (677)
T ss_pred hhcceeecceeEEEEec
Confidence 56789999999888643
No 400
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.16 E-value=2.2 Score=44.22 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=30.1
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
.|..+++.|++|+|||..+...+...+. .+..++++.- .+-..++.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-------DGDPVIYVTT-EESRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHH
Confidence 4578999999999999766544444432 2556777763 2333444433
No 401
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.14 E-value=0.72 Score=50.43 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=41.1
Q ss_pred HCCCCCCcHHHHHHHHHH-HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 413 DMGFTKMTEIQARTIPPL-LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i-~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+.|+ +++.|.+.+..+ ..+++++++|+||||||. ++..++..+.. .....+++++-.+.||
T Consensus 129 ~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 129 ERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred hcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 3454 567788887764 467899999999999995 44444444321 0234577877777776
No 402
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.13 E-value=1.2 Score=49.01 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHHc----C---CCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE----G---RDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----~---~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.++|||+..+..+.+ + .-.++.||.|.||+..+...+-..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 357888888887653 3 3588999999999987655544443
No 403
>KOG0738|consensus
Probab=90.08 E-value=0.75 Score=50.26 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.2
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.++..||.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999754
No 404
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.06 E-value=2.1 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.8
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
+.+|+.||.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999998765554
No 405
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=90.03 E-value=1.5 Score=50.10 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=69.3
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECC-cchHHHHHHHHHhh--------CCCCC
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP-SEKRFLLLFTFLKK--------NHIGE 246 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~-~~~K~~~L~~ll~~--------~~~~~ 246 (838)
+.|.+-.|||.... +.+|+..-. +++. .+ . ... .++.+.++|. +.+|......+.+. ...+|
T Consensus 372 ~AQ~i~LSATVgNp-~elA~~l~a-~lV~--y~---~-RPV-plErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 372 GAQFIYLSATVGNP-EELAKKLGA-KLVL--YD---E-RPV-PLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred CCeEEEEEeecCCh-HHHHHHhCC-eeEe--ec---C-CCC-ChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 68999999997533 345555432 3433 21 1 112 2777888887 67898888887752 35689
Q ss_pred eeeeH---------HhhhhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcc
Q psy12983 247 IVAWH---------VLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGL 290 (838)
Q Consensus 247 ~iVF~---------~~~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~ 290 (838)
+|||. ++.|...|+++...|+.++|.+ |+.+...++.+-...
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~e--Rk~vE~~F~~q~l~~ 493 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKE--RKSVERAFAAQELAA 493 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCCcccccccCCCcHHH--HHHHHHHHhcCCcce
Confidence 99994 4556667999999999999986 344455555444333
No 406
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.01 E-value=1.2 Score=54.08 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=24.5
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccc
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAK 587 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~ 587 (838)
+..++||||+|++.... ...++..+ .+.++++.+||..+.
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHh-cCceEEEEEecCCCh
Confidence 35689999999965322 12233333 245678888876543
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.96 E-value=5.5 Score=45.00 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
+.-+++.||+|+|||..+...+...... .+.++.++. +.+..+.++. +.+....++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~------~G~~V~Lit~Dt~R~aA~eQL---k~yAe~lgvp~~~--------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH------MGKSVSLYTTDNYRIAAIEQL---KRYADTMGMPFYP--------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEecccchhhhHHHHH---HHHHHhcCCCeee---------
Confidence 3457899999999999876666544222 244454443 3344444433 3322222222110
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-cCcHHHHHHHHHHCC---ccceEEEEeeeccc
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-IGFEEDMKQIVNLLP---KRRQTMLFSATTTA 586 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~-~gf~~~~~~il~~l~---~~~qil~lSAT~~~ 586 (838)
+..+..+.+.+.. ++.++|+||=+-+... ......+..++.... +...++.+|||...
T Consensus 285 ------------~~~~~~l~~~l~~------~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 ------------VKDIKKFKETLAR------DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred ------------hHHHHHHHHHHHh------CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 1112233333321 4568899997665422 122334444444431 22457889999876
Q ss_pred c-hHHHHH
Q psy12983 587 K-TETLTK 593 (838)
Q Consensus 587 ~-~~~l~~ 593 (838)
. ......
T Consensus 347 ~~~~~~~~ 354 (432)
T PRK12724 347 HHTLTVLK 354 (432)
T ss_pred HHHHHHHH
Confidence 3 333333
No 408
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.71 E-value=0.7 Score=56.76 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|.+++.. ....++|.|..|||||.+..--+..++.... -...++|+++-|+.-|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999975 3568999999999999987776666654321 2346799999999999999888877654
No 409
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.60 E-value=1.7 Score=49.00 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
...+++||||+|+|.... .+.+...++.-+++..+++.|.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 456899999999986553 24444455544445545554444
No 410
>KOG0729|consensus
Probab=89.55 E-value=5.8 Score=41.26 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
+.+++-+|.|+|||+|+-..+ + ....+.|=+=-.+|++..
T Consensus 212 kgvllygppgtgktl~arava-----n------rtdacfirvigselvqky 251 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVA-----N------RTDACFIRVIGSELVQKY 251 (435)
T ss_pred CceEEeCCCCCchhHHHHHHh-----c------ccCceEEeehhHHHHHHH
Confidence 779999999999999864332 1 222344444455776643
No 411
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.50 E-value=2 Score=47.95 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
...+++||||+|.+.... .+.+.+.+...+.+..++++|..+.
T Consensus 140 ~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCch
Confidence 567899999999986543 3444455555555566666655543
No 412
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.49 E-value=2.4 Score=48.77 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCcHHHHHHHHHHHc------C----CCEEEEecCCCCchhhhH-HHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE------G----RDLVGSAKTGSGKTLAFL-VPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFG 486 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~------~----~dvlv~apTGsGKTl~~~-lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~ 486 (838)
.+-|||.-++-.+.- + +-.+|..|-+-|||..+. +.....+... ..+..+.|++|+.+-+.+.++
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~----~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW----RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh----hcCCcEEEEeccHHHHHHhhH
Confidence 788999999988772 1 357999999999997654 3333333332 467789999999999999888
Q ss_pred HHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHH---HHHHHhcC-cccccCCceEEEEeCCCcccccCcHH
Q psy12983 487 VLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGR---LLDHLQNT-PEFLYKNLQCLIIDEADRILDIGFEE 562 (838)
Q Consensus 487 ~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~---l~~~l~~~-~~~~~~~l~lvViDEah~l~~~gf~~ 562 (838)
.++....... + .........+-...+.+. ....+... ....-.+..+.|+||.|.....+ .
T Consensus 137 ~ar~mv~~~~----------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 137 PARDMVKRDD----------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred HHHHHHHhCc----------c---hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--H
Confidence 8887655332 0 000001111111122111 11111111 11222356789999999966542 3
Q ss_pred HHHHHHHHC--CccceEEEEeee
Q psy12983 563 DMKQIVNLL--PKRRQTMLFSAT 583 (838)
Q Consensus 563 ~~~~il~~l--~~~~qil~lSAT 583 (838)
.+..+..-+ +++.+++..|..
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHhhhccCcCceEEEEecC
Confidence 344443333 345667777763
No 413
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=2.4 Score=50.16 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA 512 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~ 512 (838)
|.-+++.||.|.|||-. +..+++.+.+ --+....||.....+.
T Consensus 350 GpILcLVGPPGVGKTSL-------------------------------gkSIA~al~R------kfvR~sLGGvrDEAEI 392 (782)
T COG0466 350 GPILCLVGPPGVGKTSL-------------------------------GKSIAKALGR------KFVRISLGGVRDEAEI 392 (782)
T ss_pred CcEEEEECCCCCCchhH-------------------------------HHHHHHHhCC------CEEEEecCccccHHHh
Confidence 45688999999999943 3333322222 1234445676665544
Q ss_pred HHHhcCCcEEEcC-hHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHC
Q psy12983 513 QKLAKGINIIVAT-PGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL 571 (838)
Q Consensus 513 ~~l~~~~~IvV~T-p~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l 571 (838)
++.-.-.||. ||++.+-+...+..+ -++.+||+|.|.....++--..++.-+
T Consensus 393 ---RGHRRTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 393 ---RGHRRTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ---ccccccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 3444455655 999999888765433 589999999988765444444444444
No 414
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=89.43 E-value=0.79 Score=51.93 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHH
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~l 452 (838)
+-......+..+..++++++.||+|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4445566677777899999999999999987643
No 415
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.34 E-value=1.1 Score=50.77 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=84.8
Q ss_pred cCCCeeeeCCCcccchhhhhhhccC----CCC-ccccccchhe-----eeccccccccccceEeecccc------ccccc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDA----TPL-LVSVSIFCPF-----VLNQGLGKYFKEVSVSFTECP------NLTSH 167 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~-~~~~~~~~lv-----~l~~g~~~~~~~i~~~~~d~~------dl~~i 167 (838)
.+-|+++|.|=. |--.+.. ... -.+++|+++| ++.|--.+-+..|+..+..-| |.+.+
T Consensus 130 y~SDIIiASPLG------Lr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRV 203 (442)
T PF06862_consen 130 YSSDIIIASPLG------LRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRV 203 (442)
T ss_pred ccCCEEEEChHH------HHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHH
Confidence 345777776643 4444432 111 2378899777 444444444555555542222 11111
Q ss_pred ----cCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCC-EEEEEecCCc-----ccccccceEEEEECCc-------ch
Q psy12983 168 ----PFNLTSAERRQTMLFSATTTAKTETLTKLALKKEP-VYIGVDDTKE-----EATVAGLEQGYVVCPS-------EK 230 (838)
Q Consensus 168 ----~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p-~~i~i~~~~~-----~~~~~~i~q~~v~v~~-------~~ 230 (838)
+... .+.-|||++||+..++++..|-...+. |. -.+.+..... .....+|+|.+..++. +.
T Consensus 204 R~w~Ldg~-a~~~RQtii~S~~~~pe~~slf~~~~~-N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~ 281 (442)
T PF06862_consen 204 RPWYLDGQ-AKYYRQTIIFSSFQTPEINSLFNRHCQ-NYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDA 281 (442)
T ss_pred HHHHHcCc-chheeEeEEecCCCCHHHHHHHHhhCc-CccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhH
Confidence 0000 012499999999999999999999877 53 2222322222 2344568999987432 33
Q ss_pred HHHHHHH-HHh----hCCCCCeeeeHHhhh---------hcCCceeEEeeC
Q psy12983 231 RFLLLFT-FLK----KNHIGEIVAWHVLLL---------QVIKIKVQTRIG 267 (838)
Q Consensus 231 K~~~L~~-ll~----~~~~~~~iVF~~~~l---------~~~~~~~~~~hg 267 (838)
++.+... ++. ....+.++||+.+++ ...++....+|=
T Consensus 282 Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~E 332 (442)
T PF06862_consen 282 RFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISE 332 (442)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecc
Confidence 5544332 322 334567899977665 344555555543
No 416
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.29 E-value=2.3 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=19.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
..+|+.||.|+|||.++.+.+-..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999876665443
No 417
>KOG1131|consensus
Probab=89.27 E-value=2.1 Score=48.36 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCCCCCcHHHHHHHHHHHc----CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 414 MGFTKMTEIQARTIPPLLE----GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~----~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
|+|...+|-|.+-+..+.+ +.+.++.+|+|+|||.+.+-.++..-.. .+....+.++-.-|..=++....+++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~---~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH---YPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh---CCcccceEEEecCcchHHHHHHHHHH
Confidence 6788899999988877764 4689999999999997754444333222 12345567777777666666666666
Q ss_pred HHhh
Q psy12983 490 ELMK 493 (838)
Q Consensus 490 ~~~~ 493 (838)
.++.
T Consensus 89 ~l~~ 92 (755)
T KOG1131|consen 89 RLMD 92 (755)
T ss_pred HHHH
Confidence 6543
No 418
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.17 E-value=2.6 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=16.7
Q ss_pred CEEEEecCCCCchhhhHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l 455 (838)
.+++.||.|+|||..+.+.+-
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999987755443
No 419
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.07 E-value=1.6 Score=43.12 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=73.8
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH-HHHHHHHHHHhhhcCCeEEEEeCC-----cch
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS-MQTFGVLKELMKYHHHTYGLIMGG-----ASR 508 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La-~Q~~~~l~~~~~~~~~~v~~l~gg-----~~~ 508 (838)
-+.+..++|.|||.+++--++.+. ..+.+++++-=.+.-. .-=...++.+ ++.+.....+ .+.
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~-------~~g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~~~~ 75 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRAL-------GHGKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWETQNR 75 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH-------HCCCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecCCCc
Confidence 366778899999999988888876 3477787763221110 0000112221 2222221111 011
Q ss_pred HHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc--HHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 509 QAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 509 ~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
.+.... ....++.... .+.-..+++||+||+=...+.++ .+.+..+++..|+...+++..-.+++
T Consensus 76 ~~~~~~-----------~~~~~~~a~~--~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 76 EADTAI-----------AKAAWQHAKE--MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHH-----------HHHHHHHHHH--HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 111110 1111221111 12235689999999998777774 35677788888888888887777776
Q ss_pred chHHHHH
Q psy12983 587 KTETLTK 593 (838)
Q Consensus 587 ~~~~l~~ 593 (838)
...+++.
T Consensus 143 ~l~e~AD 149 (173)
T TIGR00708 143 DLLELAD 149 (173)
T ss_pred HHHHhCc
Confidence 5555544
No 420
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.73 E-value=2.2 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.2
Q ss_pred CCCEEEEecCCCCchhhhHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
++.+++.||+|+|||..+...+-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999765443333
No 421
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.72 E-value=1.2 Score=48.72 Aligned_cols=58 Identities=31% Similarity=0.351 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 419 MTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 419 ~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+++.|.+.+..+. .+++++++|+||||||.. +..++..+.. .....+++.+=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~----~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA----SAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc----CCCCceEEEecCCcccc
Confidence 6677887776654 567999999999999975 3444444422 02345777777777763
No 422
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.68 E-value=1.5 Score=54.51 Aligned_cols=81 Identities=10% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHhcCCCeEEEEecchhhHHHHHHHhhcC----CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEc-cCCccCCCCCC
Q psy12983 636 FLKKNRKKKVMVFFSSCMSVKFHHELLNYI----DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT-DVAARGLDIPA 710 (838)
Q Consensus 636 ~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~----~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT-~~~~~GiDip~ 710 (838)
+..-..++++.|.++|.--|+..++.+++. +++|..+..-.+.++...+++...+|+++|+|.| ..+..++-+.|
T Consensus 637 FkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fkd 716 (1139)
T COG1197 637 FKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKD 716 (1139)
T ss_pred HHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEec
Confidence 334457789999999988888777777664 6788889999999999999999999999999999 68888999999
Q ss_pred ccEEEE
Q psy12983 711 VDWIVQ 716 (838)
Q Consensus 711 v~~VI~ 716 (838)
...+|.
T Consensus 717 LGLlII 722 (1139)
T COG1197 717 LGLLII 722 (1139)
T ss_pred CCeEEE
Confidence 999884
No 423
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.68 E-value=2.4 Score=44.87 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=73.2
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.=+++.|.+|.|||..++-.+.+.... .+..++|++.--. ..++..++-.... ++....+..+.-..++
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~------~~~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN------GGYPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRSGDLSDEE 88 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT------TSSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGCHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh------cCCeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhccccCHHH
Confidence 34568899999999998777666666543 3578888885211 1222222222211 2211111122222222
Q ss_pred HHHHh------cCCcEEE-c----ChHHHHHHHhcCcccccCCceEEEEeCCCccccc----CcHHHHHHHHHHCC----
Q psy12983 512 AQKLA------KGINIIV-A----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI----GFEEDMKQIVNLLP---- 572 (838)
Q Consensus 512 ~~~l~------~~~~IvV-~----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~----gf~~~~~~il~~l~---- 572 (838)
+..+. ....+++ . |++.+.+.+...... ..++++||||=.|.+... +....+..+...++
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~-~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE-GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH-STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh-ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22221 1223433 3 344555554433211 267899999999988764 23344444433322
Q ss_pred -ccceEEEEeeecc
Q psy12983 573 -KRRQTMLFSATTT 585 (838)
Q Consensus 573 -~~~qil~lSAT~~ 585 (838)
.++.++++|..-.
T Consensus 168 ~~~i~vi~~sQlnr 181 (259)
T PF03796_consen 168 ELNIPVIALSQLNR 181 (259)
T ss_dssp HHTSEEEEEEEBSG
T ss_pred HcCCeEEEccccCh
Confidence 2566777776543
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.64 E-value=3.1 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.183 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
.+.-+.+.||||+|||......+-
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356689999999999987654443
No 425
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.62 E-value=2.4 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=17.4
Q ss_pred CEEEEecCCCCchhhhHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~ 456 (838)
-+|+.||.|+|||.++.+.+-.
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999887555433
No 426
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.58 E-value=1.9 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.5
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
+.+++.||.|+|||..+...+-..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999998876555433
No 427
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.52 E-value=0.68 Score=52.67 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHcCC--CEEEEecCCCCchhhhHHHHHHHH
Q psy12983 420 TEIQARTIPPLLEGR--DLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~~--dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.+.|...+..+++.. -+++.||||||||.. +..+++.+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 788888888877653 488999999999976 34444444
No 428
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.49 E-value=0.78 Score=49.71 Aligned_cols=61 Identities=28% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH
Q psy12983 415 GFTKMTEIQARTIPPLLEGR-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ 483 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~~~-dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q 483 (838)
.|..+++.|...+..+.+.+ +++++|.||||||.. +-++... . ....+++.+=-|.||--+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~-----i-~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGF-----I-DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhc-----C-CCcccEEEEeehhhhccC
Confidence 56679999999998877765 999999999999964 2222211 1 223488888888777443
No 429
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.46 E-value=1.4 Score=47.69 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 419 MTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 419 ~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+++.|.+.+..+. .+++++++|+||||||... ..++..+.. ..+..+++++=.+.|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~----~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAK----NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhc----cCCCceEEEECCchhhc
Confidence 5566666666544 5679999999999999753 444444322 01356788888877763
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=88.44 E-value=5.7 Score=45.30 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=26.7
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQ 483 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q 483 (838)
-++++|++|+|||.++.-.+..+. . ..+.+++++. +.|.-+.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~-~-----~~G~kV~lV~~D~~R~aa~e 146 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLK-K-----KKKKKVLLVAADVYRPAAIE 146 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-H-----hcCCcEEEEEccccchHHHH
Confidence 478999999999998766655432 2 2245555544 34544443
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.28 E-value=6 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=18.9
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
++-+.+.||||+|||.+....+-..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3457899999999999866555443
No 432
>PRK01172 ski2-like helicase; Provisional
Probab=88.26 E-value=0.29 Score=59.63 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=44.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
+..++.+++|+++ +..++++.+ ..+..+.++| +.+.++...++.++..+. .+ +..
T Consensus 109 ~~~~dIiv~Tpek------~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~----------~~--~~~ 169 (674)
T PRK01172 109 IKRYDVVILTSEK------ADSLIHHDP-YIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR----------YV--NPD 169 (674)
T ss_pred hccCCEEEECHHH------HHHHHhCCh-hHHhhcCEEEEecchhccCCCccHHHHHHHHHHH----------hc--CcC
Confidence 3567899999987 433444433 2356677666 333444445555443331 01 346
Q ss_pred ceEEEEEEeCChHHHHHHHH
Q psy12983 177 RQTMLFSATTTAKTETLTKL 196 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~ 196 (838)
.|++++|||++. ..++++.
T Consensus 170 ~riI~lSATl~n-~~~la~w 188 (674)
T PRK01172 170 ARILALSATVSN-ANELAQW 188 (674)
T ss_pred CcEEEEeCccCC-HHHHHHH
Confidence 899999999975 4666653
No 433
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.18 E-value=2.6 Score=48.47 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=32.1
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
|.-+++.|++|+|||...+..+.... ..+.+++|+.- .+-..|+....++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-------~~g~~vlYvs~-Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-------AAGGKVLYVSG-EESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-------hcCCeEEEEEc-cccHHHHHHHHHH
Confidence 45689999999999986554444332 23567888874 3444555544444
No 434
>CHL00181 cbbX CbbX; Provisional
Probab=88.18 E-value=2.4 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=18.1
Q ss_pred CCCEEEEecCCCCchhhhHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l 455 (838)
+.++++.||+|+|||.++-..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999988755543
No 435
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.04 E-value=0.6 Score=51.54 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+..+++++++||||||||.. +..++..+ ....+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-------CCCCCEEEECCCcccc
Confidence 44678999999999999964 34444332 2345677777777763
No 436
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.96 E-value=3.5 Score=48.24 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
...+++||||+|++.... .+.+...+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 567899999999987653 334455555556667667665
No 437
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.86 E-value=7.6 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.138 Sum_probs=18.5
Q ss_pred CEEEEecCCCCchhhhHHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
-++++|++|+|||.++.-.+..+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999876665553
No 438
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.79 E-value=2 Score=48.21 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=32.3
Q ss_pred CceEEEEeCCCcccccC-cHHHHHHHHHHCCcc-ceEEEEeeecccc
Q psy12983 543 NLQCLIIDEADRILDIG-FEEDMKQIVNLLPKR-RQTMLFSATTTAK 587 (838)
Q Consensus 543 ~l~lvViDEah~l~~~g-f~~~~~~il~~l~~~-~qil~lSAT~~~~ 587 (838)
++++++||.+|.+.... ....+-.+.+.+... .|+++.|..+|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 67899999999988763 566666677666543 4777777666654
No 439
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.61 E-value=3 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=17.8
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
..++++.||+|+|||..+...+
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4689999999999998754444
No 440
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.39 E-value=2.8 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHcCCCEEEEecCCCCchhhhHH
Q psy12983 428 PPLLEGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 428 ~~i~~~~dvlv~apTGsGKTl~~~l 452 (838)
+.+.++.|++..||+|+|||-.|.-
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 5566789999999999999966543
No 441
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.39 E-value=9.4 Score=37.46 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=16.3
Q ss_pred EEEEecCCCCchhhhHHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~ 456 (838)
+++.|++|+|||......+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999886555443
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.38 E-value=1.1 Score=44.78 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEecCCCCchhhh
Q psy12983 418 KMTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~ 450 (838)
.+++.|.+.+.... .+..+++.||||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 36788888887754 5789999999999999753
No 443
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.33 E-value=1.4 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.1
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHh
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYN 460 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~ 460 (838)
=++|.||||||||.+ +.+++..+.+
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 489999999999976 4566666644
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.07 E-value=3.3 Score=49.90 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=38.8
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
+-=++|+|..|.+.+......+..+++..|++.+.++.|=+-++
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34589999999999998889999999999999999999887654
No 445
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.02 E-value=3.2 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
..+|+.||.|+|||..+...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999998875555443
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.01 E-value=1.3 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=18.6
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
++.+++.||||+|||......+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999998765544443
No 447
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.96 E-value=4.9 Score=45.95 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=56.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-+++.|++|.|||..++--+...... .+..++|++-- .-..|+..++-... .++....+..+.-..++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fSlE-m~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~~~ 263 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFSLE-MSAEQLGERLLASK--SGINTGNIRTGRFNDSD 263 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcCCCCHHH
Confidence 45678999999999997665555443222 35667777621 12333333322221 12222212222222222
Q ss_pred HHHHh------cCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 512 AQKLA------KGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 512 ~~~l~------~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
+..+. .+.++.|. |++.+...++... .....+++||||=.|.+..
T Consensus 264 ~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 264 FNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIK-RKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEecccccCC
Confidence 32221 12345553 3344444333221 1112588999999998764
No 448
>PRK06904 replicative DNA helicase; Validated
Probab=86.94 E-value=7.2 Score=45.16 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=58.1
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCC-cchHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGG-ASRQA 510 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg-~~~~~ 510 (838)
.|.=+++.|.+|.|||.-++-.+...... .+..++|++.- -=..|+..++-.... ++....+..+ .-..+
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHH
Confidence 44557889999999997654444433222 35567776542 224444444333222 2222112122 22223
Q ss_pred HHHH-------HhcCCcEEE-----cChHHHHHHHhcCcccccCCceEEEEeCCCccccc
Q psy12983 511 EAQK-------LAKGINIIV-----ATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558 (838)
Q Consensus 511 ~~~~-------l~~~~~IvV-----~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~ 558 (838)
++.. +....++.| .|+..+....+... .....+++||||=.|.+...
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCCC
Confidence 3322 223344666 35555544333221 01135889999999987543
No 449
>PF05729 NACHT: NACHT domain
Probab=86.92 E-value=4.1 Score=39.18 Aligned_cols=20 Identities=35% Similarity=0.232 Sum_probs=15.4
Q ss_pred CEEEEecCCCCchhhhHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~ 454 (838)
-++|.|+.|+|||......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 37899999999998654333
No 450
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=86.87 E-value=1.5 Score=52.81 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=73.2
Q ss_pred CCchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc
Q psy12983 624 CPSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD 700 (838)
Q Consensus 624 ~~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~ 700 (838)
....-|.+..+..++.. .++++||.++-+.....+.+.++.. +.++..+|+++++.+|.+...+..+|+.+|+|.|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 34456677777777653 6789999999998888888888765 88999999999999999999999999999999985
Q ss_pred CCccCCCCCCccEEEE
Q psy12983 701 VAARGLDIPAVDWIVQ 716 (838)
Q Consensus 701 ~~~~GiDip~v~~VI~ 716 (838)
.+- =.-+++...||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 432 234566677763
No 451
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.87 E-value=5.2 Score=42.42 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=26.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
.|.-++|.|++|+|||..++-.+.+.+ ..+.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-------~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-------SRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-------hCCCcEEEEE
Confidence 346789999999999987665555443 2366788877
No 452
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.84 E-value=2.9 Score=41.39 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH-HHHHHHHHhhhcCCeEEEEeCCc-chHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ-TFGVLKELMKYHHHTYGLIMGGA-SRQAEAQ 513 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q-~~~~l~~~~~~~~~~v~~l~gg~-~~~~~~~ 513 (838)
++|.-..|-|||.+++=-++.++ ..|.++.|+-=.+-=... -...+..+ ...+....+..+. +......
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~-------GhG~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL-------GHGLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDRE 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh-------cCCCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCcH
Confidence 66777788999999988888887 567888876522211000 01112221 1112221111111 1100000
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc--HHHHHHHHHHCCccceEEEEeeecccchHHH
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKRRQTMLFSATTTAKTETL 591 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~~qil~lSAT~~~~~~~l 591 (838)
.++ ..+...+.+... .+.-..+++||+||.-..+..++ .+++..+++.-|....+|+..-..++...++
T Consensus 102 -----~d~--~aa~~~w~~a~~--~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 102 -----ADI--AAAKAGWEHAKE--ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred -----HHH--HHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 011 222222222221 12224689999999998777774 4677778887777788887776677666666
Q ss_pred HHHH
Q psy12983 592 TKLA 595 (838)
Q Consensus 592 ~~~~ 595 (838)
+...
T Consensus 173 ADlV 176 (198)
T COG2109 173 ADLV 176 (198)
T ss_pred HHHH
Confidence 5543
No 453
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.75 E-value=5 Score=44.88 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
|.-+++.|++|+|||...+..+.... ..+.+++|+.-. +-..|+.....+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a-------~~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA-------KRGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-------hcCCeEEEEECC-cCHHHHHHHHHH
Confidence 46789999999999986554443332 234678888654 334455444333
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.38 E-value=1.5 Score=46.72 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=36.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc--CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 411 IADMGFTKMTEIQARTIPPLLE--GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 411 l~~~g~~~~~~~Q~~ai~~i~~--~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
+.++|+ .+.|.+.+..+.. +..+++.|+||||||... ..++..+. ..+.+++.+=...|
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~------~~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN------TPEKNIITVEDPVE 119 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC------CCCCeEEEECCCce
Confidence 344555 6667777766654 346899999999999753 33444431 13445565544444
No 455
>KOG0739|consensus
Probab=86.29 E-value=6.7 Score=41.60 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=62.8
Q ss_pred HHHHcC-----CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEE
Q psy12983 428 PPLLEG-----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLI 502 (838)
Q Consensus 428 ~~i~~~-----~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l 502 (838)
|.+..| +.+++-+|.|+||+..+-..+-+ ...+.+-+-+..|+..|..+-.++.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE-----------AnSTFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE-----------ANSTFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-----------cCCceEEeehHHHHHHHhccHHHHHH---------
Confidence 455555 35899999999999543222221 22567777887887765533333211
Q ss_pred eCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC---cHHHHHHH----HHHC----
Q psy12983 503 MGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG---FEEDMKQI----VNLL---- 571 (838)
Q Consensus 503 ~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g---f~~~~~~i----l~~l---- 571 (838)
.|..+.+. +.-+.|.|||+|.+.... =.+..++| +-.+
T Consensus 216 -------------------------nLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 -------------------------NLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred -------------------------HHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 01112121 234789999999876543 11222222 2222
Q ss_pred CccceEEEEeeecccchHH
Q psy12983 572 PKRRQTMLFSATTTAKTET 590 (838)
Q Consensus 572 ~~~~qil~lSAT~~~~~~~ 590 (838)
..+--++.+.||-.+.+..
T Consensus 265 ~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred cCCCceEEEecCCCchhHH
Confidence 1234588899998776544
No 456
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=6.3 Score=43.99 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=18.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIY 459 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~ 459 (838)
.++++-|+||+|||.+.- -+++.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHH
Confidence 479999999999997643 3344443
No 457
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=4.4 Score=44.21 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=31.5
Q ss_pred cchhhhcccCCHHHHHHHHH--CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhh
Q psy12983 394 TQFEALKGKVCENTLKAIAD--MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~--~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~ 450 (838)
..|++.++ |.+.+.+.-+. .....|--++.-.|. --+.+++-||.|+|||+.+
T Consensus 148 vtY~dIGG-L~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 148 VTYEDIGG-LDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CChhhccC-HHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH
Confidence 34565552 55554433222 455444444444332 3478999999999999865
No 458
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.87 E-value=4.6 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=16.9
Q ss_pred CEEEEecCCCCchhhhHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~ 456 (838)
-+++.||.|+|||.++.+-+-.
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999877655543
No 459
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.84 E-value=0.81 Score=50.36 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+..+++++|+|+||||||.. +.+++..+ ....+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i-------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI-------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC-------CCCCeEEEecCCCcc
Confidence 44678999999999999964 34444443 234566666555555
No 460
>KOG0741|consensus
Probab=85.79 E-value=4.1 Score=46.44 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCcccccC-----cHHHHHH----HHHHCCcc-ceEEEEeeecc
Q psy12983 542 KNLQCLIIDEADRILDIG-----FEEDMKQ----IVNLLPKR-RQTMLFSATTT 585 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-----f~~~~~~----il~~l~~~-~qil~lSAT~~ 585 (838)
+.+++||+|++.++.+|. |.+.+.+ +++..|++ .+.+.+..|-.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 457899999999999985 5554443 34444554 44555544433
No 461
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.73 E-value=0.11 Score=50.66 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCce
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQ 178 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQ 178 (838)
.+++++.|+.+ ++++++.... .+..+.++| +.+.++...+..+...+.. .+..|
T Consensus 95 ~~~ilv~T~~~------l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~-------------~~~~~ 154 (169)
T PF00270_consen 95 QADILVTTPEQ------LLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR-------------FKNIQ 154 (169)
T ss_dssp TSSEEEEEHHH------HHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-------------TTTSE
T ss_pred cccccccCcch------hhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcC-------------CCCCc
Confidence 47888888887 7777766333 344466655 2223455555555555411 12478
Q ss_pred EEEEEEeCChHHHHH
Q psy12983 179 TMLFSATTTAKTETL 193 (838)
Q Consensus 179 tlLFSAT~~~~v~~l 193 (838)
.+++|||+++.++++
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999888764
No 462
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=85.63 E-value=5.7 Score=43.38 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=33.3
Q ss_pred ChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeec
Q psy12983 525 TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATT 584 (838)
Q Consensus 525 Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~ 584 (838)
....+.+.+...+. ....+++|||++|.|.... .+.+.+++..-| +..++++|..+
T Consensus 108 ~ir~i~~~l~~~p~--~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 108 QIREIKRFLSRPPL--EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred HHHHHHHHHccCcc--cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 33344444444432 2568999999999986543 345555555555 66566655544
No 463
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.50 E-value=3.4 Score=42.91 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=26.8
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF 485 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~ 485 (838)
-++++.-||+|+|||..+ .++.+ ..+.-++++-..+|.-.+.
T Consensus 151 PknVLFyGppGTGKTm~A-----kalan------e~kvp~l~vkat~liGehV 192 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA-----KALAN------EAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cceeEEECCCCccHHHHH-----HHHhc------ccCCceEEechHHHHHHHh
Confidence 389999999999999754 22211 2334466666666655443
No 464
>PHA00350 putative assembly protein
Probab=85.36 E-value=4.6 Score=45.30 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.1
Q ss_pred CEEEEecCCCCchhhhHH-HHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV-PAVELI 458 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l-p~l~~l 458 (838)
-.++.|..|||||+.++- -++.++
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHH
Confidence 358899999999998765 355454
No 465
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=0.51 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
...|+++.||||||||+.+.-.+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLA 118 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLA 118 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHH
Confidence 44689999999999998765443
No 466
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=85.31 E-value=0.99 Score=46.77 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.0
Q ss_pred EEEEecCCCCchhh
Q psy12983 436 LVGSAKTGSGKTLA 449 (838)
Q Consensus 436 vlv~apTGsGKTl~ 449 (838)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 467
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.24 E-value=3.6 Score=45.66 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
...+++||||+|.|.... .+.+...+...+.+..++++|..
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 467899999999986553 34455555655556666666543
No 468
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.23 E-value=6.8 Score=46.95 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=24.8
Q ss_pred cCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 541 YKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 541 ~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
+.+.+++||||+|++.... .+.+...+...+....+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3567899999999986543 334445555544444444433
No 469
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.21 E-value=0.89 Score=45.16 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=25.1
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.++.||++||||.-.+.-+-..- ..+.+++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~-------~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYE-------IAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH-------HTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHH-------hCCCeEEEEEeccc
Confidence 57899999999976544443321 24788999998643
No 470
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.14 E-value=3.6 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.087 Sum_probs=17.3
Q ss_pred CEEEEecCCCCchhhhHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~ 456 (838)
-+++.||.|+|||.++.+.+-.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999877554433
No 471
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.13 E-value=4.7 Score=40.31 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=17.3
Q ss_pred CCEEEEecCCCCchhhhHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
..+++.||.|+|||..+...+-.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999876544433
No 472
>KOG1513|consensus
Probab=84.99 E-value=0.69 Score=54.42 Aligned_cols=164 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHcCCC----------EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 419 MTEIQARTIPPLLEGRD----------LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~d----------vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+...|.+++-..-+..+ ++|-...|-||--+..-.+++.-++ ..+++|++.-+..|-.+..+.+
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk------GRKrAlW~SVSsDLKfDAERDL 338 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK------GRKRALWFSVSSDLKFDAERDL 338 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc------ccceeEEEEeccccccchhhch
Q ss_pred HHHhhhcCCeEEEEeC---CcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCc------------eEEEEeCCC
Q psy12983 489 KELMKYHHHTYGLIMG---GASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNL------------QCLIIDEAD 553 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~g---g~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l------------~lvViDEah 553 (838)
+...... +.+..+.. +.-..++....+. .|+++|...|..--.....---.++ ++||+||||
T Consensus 339 ~DigA~~-I~V~alnK~KYakIss~en~n~kr--GViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 339 RDIGATG-IAVHALNKFKYAKISSKENTNTKR--GVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hhcCCCC-ccceehhhcccccccccccCCccc--eeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Q ss_pred cccccC---------cHHHHHHHHHHCCccceEEEEeeecccchHHHH
Q psy12983 554 RILDIG---------FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLT 592 (838)
Q Consensus 554 ~l~~~g---------f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~ 592 (838)
+..+.- -+..+..+.+.+| +.+++.-|||=....++|+
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMa 462 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMA 462 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhh
No 473
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=84.91 E-value=4.1 Score=45.03 Aligned_cols=129 Identities=19% Similarity=0.143 Sum_probs=54.5
Q ss_pred EEEecCCCCchhhhHHHHHHHHHhccCCCCCC-cEEEEEcCCHHHHHH-HHH---HHHHHhhhcCCeEEEE--eCCcchH
Q psy12983 437 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNG-TGIIIISPTRELSMQ-TFG---VLKELMKYHHHTYGLI--MGGASRQ 509 (838)
Q Consensus 437 lv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~-~~vlvl~Pt~~La~Q-~~~---~l~~~~~~~~~~v~~l--~gg~~~~ 509 (838)
++.++.|+|||.+....++..+.. .++ ..+++. ||..-+.+ +.. .+...... ....... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~-----~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT-----RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS-----SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhh-----CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 578999999999877777666554 233 555665 55544444 333 22222222 1111111 111000
Q ss_pred HHHHHHhcCCcEEEcChHHH--HHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 510 AEAQKLAKGINIIVATPGRL--LDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 510 ~~~~~l~~~~~IvV~Tp~~l--~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
+.++..|.+.+-+.- ...+. =..++++++||+-.+.+..+...+......... ...+.+|.|+.
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~~------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~ 138 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNIR------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPN 138 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHHH------TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---
T ss_pred -----ecCceEEEEecccccccccccc------ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCC
Confidence 034455666552211 11111 145789999998887655444444333333222 22225555443
No 474
>PRK07004 replicative DNA helicase; Provisional
Probab=84.86 E-value=5.4 Score=46.07 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=66.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-+++.|.+|.|||..++--+.....+ .+..+++++.- -=..|+..++-.. ..++....+..|.-..++
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~------~~~~v~~fSlE-M~~~ql~~R~la~--~~~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE------YGLPVAVFSME-MPGTQLAMRMLGS--VGRLDQHRMRTGRLTDED 282 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH------cCCeEEEEeCC-CCHHHHHHHHHHh--hcCCCHHHHhcCCCCHHH
Confidence 45668889999999997655444433222 35566666521 1122333222211 111221111122222233
Q ss_pred HHHHh------cCCcEEE-----cChHHHHHHHhcCcccccCCceEEEEeCCCcccccC----cHHHHHHHHHHCC----
Q psy12983 512 AQKLA------KGINIIV-----ATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG----FEEDMKQIVNLLP---- 572 (838)
Q Consensus 512 ~~~l~------~~~~IvV-----~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g----f~~~~~~il~~l~---- 572 (838)
+..+. ...++.| .|+..+....++... ....+++||||=.|.+...+ ....+..|.+.++
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAk 361 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAK 361 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 32221 2345655 344444443332211 12357899999999886332 2233444433332
Q ss_pred -ccceEEEEee
Q psy12983 573 -KRRQTMLFSA 582 (838)
Q Consensus 573 -~~~qil~lSA 582 (838)
-++.++++|.
T Consensus 362 el~ipVi~lsQ 372 (460)
T PRK07004 362 ELDVPVIALSQ 372 (460)
T ss_pred HhCCeEEEEec
Confidence 1566676664
No 475
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=84.69 E-value=4.7 Score=39.77 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=65.0
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeC-CcchHHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMG-GASRQAEAQK 514 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~g-g~~~~~~~~~ 514 (838)
+.|---.|=|||.+++=-++.++ ..+.+|+++-=.+.- ....+...+....++.+...-. .........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH-
Confidence 44555678999999988888876 568889888755540 1112222222222232221111 000000000
Q ss_pred HhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc--HHHHHHHHHHCCccceEEEEeeecccchHHHH
Q psy12983 515 LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF--EEDMKQIVNLLPKRRQTMLFSATTTAKTETLT 592 (838)
Q Consensus 515 l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf--~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~ 592 (838)
.+ .......++.... .+.-..+++||+||+=...+.++ ...+..+++..|....+++..-.+++...+.+
T Consensus 76 ----~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 76 ----ED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp ----HH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred ----HH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 00 0001111211111 12235689999999988877774 45677778877778888887777766555444
Q ss_pred H
Q psy12983 593 K 593 (838)
Q Consensus 593 ~ 593 (838)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 3
No 476
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.63 E-value=5.7 Score=50.18 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=34.4
Q ss_pred eEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 545 QCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 545 ~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
-+||||++|.+.+......+..++...+.+..+++.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 579999999987665667888889999999999888877543
No 477
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.52 E-value=16 Score=40.01 Aligned_cols=125 Identities=21% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc-CC-HHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS-PT-RELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~-Pt-~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
+.-+.+.||+|+|||......+.... ..+.+++++. .+ +.-+.++...+... .++.+.....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-------~~g~~V~Li~~D~~r~~a~eql~~~a~~---~~i~~~~~~~~~dpa- 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-------AQGKKVLLAAGDTFRAAAIEQLQVWGER---VGVPVIAQKEGADPA- 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-------hcCCeEEEEecCccchhhHHHHHHHHHH---cCceEEEeCCCCCHH-
Confidence 45678999999999987654443322 2345566554 33 44443333333322 233322211111110
Q ss_pred HHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHC------CccceEEEEeee
Q psy12983 511 EAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLL------PKRRQTMLFSAT 583 (838)
Q Consensus 511 ~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l------~~~~qil~lSAT 583 (838)
....+.+.. ...+++++||||=+-++.... .-.++..+.... .+...++.++||
T Consensus 183 ----------------~~v~~~l~~---~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 183 ----------------SVAFDAIQA---AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred ----------------HHHHHHHHH---HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 001111111 012557899999988754332 334555554432 233457889999
Q ss_pred cccc
Q psy12983 584 TTAK 587 (838)
Q Consensus 584 ~~~~ 587 (838)
....
T Consensus 244 ~g~~ 247 (318)
T PRK10416 244 TGQN 247 (318)
T ss_pred CChH
Confidence 6543
No 478
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.48 E-value=4.2 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=18.4
Q ss_pred CCEEEEecCCCCchhhhHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
.+.++.||+|+|||..+-..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999876544444
No 479
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.25 E-value=5 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=18.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
.+.++.||+|.|||..+...+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999876544443
No 480
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.11 E-value=6 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=17.1
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
.+.++.||+|.|||..+-..+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 689999999999998764433
No 481
>KOG1133|consensus
Probab=84.06 E-value=9.6 Score=44.90 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCC-------CeEEecCCCChhHHHHHHHHHhc----CCceEEEEc--cCCccCCC
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDL-------PVMCIHGKQKQMKRTTTFFQFCN----AETGILLCT--DVAARGLD 707 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~-------~v~~lhg~m~~~~R~~i~~~F~~----g~~~VLVaT--~~~~~GiD 707 (838)
-.+-+++|+++.+-...+.+.+.+.|+ +-.++-..-+ -+++++.|.. |.-.+|+|. --+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 346799999999999999888876543 1222222222 4566666653 444566554 67889999
Q ss_pred CCC--ccEEEEeCCCCC--------------------------------HHHHHHHhcccCcCCCCccEEEEEe
Q psy12983 708 IPA--VDWIVQYDPPDD--------------------------------PKEYIHRVGRTARGEGSSGHALLIL 747 (838)
Q Consensus 708 ip~--v~~VI~~d~p~s--------------------------------~~~y~Qr~GRagR~~g~~g~~i~l~ 747 (838)
+.+ ++.||..++|.. .....|-+|||-|. ++.+|.+++
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH--~~DYA~i~L 776 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH--RKDYASIYL 776 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh--hccceeEEE
Confidence 976 788988888731 12357899999995 455554444
No 482
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=83.99 E-value=1.3 Score=46.35 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=36.1
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
|..++|.|++|+|||..++-.+...+ ..+..++|++ +.+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-------~~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-------QMGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-------HcCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 56799999999999987766666554 2367788887 345566666655554
No 483
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=83.47 E-value=2.1 Score=47.27 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=39.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHH-cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 411 IADMGFTKMTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 411 l~~~g~~~~~~~Q~~ai~~i~-~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+.+.|+ +++.+.+.+..+. .+.+++++|+||+|||... ..++..+ ....+++++-.+.||
T Consensus 157 l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i-------~~~~riv~iEd~~El 217 (340)
T TIGR03819 157 LVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV-------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC-------CCCCcEEEECCccee
Confidence 344555 5667777776654 4679999999999999643 3333332 234567777777666
No 484
>PRK08506 replicative DNA helicase; Provisional
Probab=83.36 E-value=8.9 Score=44.49 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=57.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-+++.|.+|.|||..++-.+.... ..+..++|++.- .=..|+..++-.... ++....+..+.-...+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~-------~~g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKAL-------NQDKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDE 260 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHH-------hcCCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHH
Confidence 345688899999999987666655543 135567776532 224444444333211 2221111112212222
Q ss_pred HHHHh------cCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 512 AQKLA------KGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 512 ~~~l~------~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
+..+. ....+.|- |+..+...++.... ....+++||||=.+.+..
T Consensus 261 ~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 261 WERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccC
Confidence 32221 12345442 44555444332211 113589999999998763
No 485
>PRK10436 hypothetical protein; Provisional
Probab=82.91 E-value=2.2 Score=49.15 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHc--CCCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 420 TEIQARTIPPLLE--GRDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 420 ~~~Q~~ai~~i~~--~~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
.+.|.+.+..+.. +.-++++||||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 6667777766543 356899999999999864 3445543
No 486
>PRK08760 replicative DNA helicase; Provisional
Probab=82.83 E-value=6.3 Score=45.72 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=56.8
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-++|.|.+|.|||..++-.+.....+ .+..++|.+.- .=..|+..++...... +....+..+.-..++
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~--i~~~~i~~g~l~~~e 298 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK------SKKGVAVFSME-MSASQLAMRLISSNGR--INAQRLRTGALEDED 298 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh------cCCceEEEecc-CCHHHHHHHHHHhhCC--CcHHHHhcCCCCHHH
Confidence 34567889999999998665555443322 35567766532 2233444444433221 111111122222223
Q ss_pred HHHH------hcCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCccc
Q psy12983 512 AQKL------AKGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 512 ~~~l------~~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~ 556 (838)
+..+ .....+.|- |++.+...++... .-..+++||||=.+.+.
T Consensus 299 ~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 3222 112345443 3455544433321 11457999999998775
No 487
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=82.51 E-value=6.3 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=18.3
Q ss_pred CCEEEEecCCCCchhhhHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVEL 457 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~ 457 (838)
+.+++.||.|+|||.++...+-..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999998775555443
No 488
>PRK08840 replicative DNA helicase; Provisional
Probab=82.25 E-value=16 Score=42.24 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=55.7
Q ss_pred HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHH
Q psy12983 431 LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQA 510 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~ 510 (838)
..|.=+++.|.+|.|||.-++-.+...... .+..++|.+.-- =..|+..++-... .++...-+..+.-..+
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~------~~~~v~~fSlEM-s~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMD------QDKPVLIFSLEM-PAEQLMMRMLASL--SRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHh------CCCeEEEEeccC-CHHHHHHHHHHhh--CCCCHHHHhcCCCCHH
Confidence 345567889999999997664444443222 356677765321 1334433332221 1222111112222223
Q ss_pred HHHH-------HhcCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCccc
Q psy12983 511 EAQK-------LAKGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 511 ~~~~-------l~~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~ 556 (838)
++.. +....++.|- |+..+....+.... ....+++||||=.|.+.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcC
Confidence 3332 2123345553 33444333322211 11258999999999875
No 489
>PHA00012 I assembly protein
Probab=82.09 E-value=15 Score=39.99 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=28.7
Q ss_pred CCceEEEEeCCCcccccC-cH----HHHHHHHHH-CCccceEEEEeeeccc
Q psy12983 542 KNLQCLIIDEADRILDIG-FE----EDMKQIVNL-LPKRRQTMLFSATTTA 586 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g-f~----~~~~~il~~-l~~~~qil~lSAT~~~ 586 (838)
..-+++|+||||.....- ++ ..+.+.+.. -.....++++|..+..
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~ 130 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISI 130 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHH
Confidence 456799999999976531 22 334443333 3346788888887764
No 490
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.05 E-value=6.3 Score=44.19 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.7
Q ss_pred HHcCCCEEEEecCCCCchhhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~ 450 (838)
+-.|+.+++.||+|+|||..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH
Confidence 346899999999999999753
No 491
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=81.55 E-value=1.6 Score=50.75 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=38.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
.++++.||||||||..+++|.+-. . ...++|.=|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--------~-~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--------Y-PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--------c-cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997632 1 236888889989887776655554
No 492
>PRK05973 replicative DNA helicase; Provisional
Probab=81.55 E-value=2.1 Score=44.59 Aligned_cols=55 Identities=27% Similarity=0.277 Sum_probs=35.7
Q ss_pred HHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 429 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 429 ~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
-+..|.-++|.|++|+|||..++-.+.... ..+.+++|++-- +=..|+.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-------~~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAM-------KSGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-------hcCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 344567789999999999987666655554 236677777632 2245555555544
No 493
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.53 E-value=4.1 Score=46.04 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
.+.+++.||+|+|||+.+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 367999999999999764
No 494
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=81.51 E-value=5.8 Score=43.99 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp 453 (838)
+.+++.||.|+|||..+...
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999765433
No 495
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=81.10 E-value=1.4 Score=49.73 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=36.1
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
++++.||||||||..+++|.+-. .+..++|+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---------CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999999887642 235688888998888766554443
No 496
>PRK05636 replicative DNA helicase; Provisional
Probab=80.95 E-value=10 Score=44.36 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc---CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS---PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQ 509 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~---Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~ 509 (838)
|.-+++.|.+|.|||.-++-.+.....+ .+..++|.+ +..+|+..+. ... .++....+..+.-..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~l----s~~--s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIK------HNKASVIFSLEMSKSEIVMRLL----SAE--AEVRLSDMRGGKMDE 332 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHHH----HHh--cCCCHHHHhcCCCCH
Confidence 4456889999999997655444333222 345666663 3333433322 211 112111122222223
Q ss_pred HHHHHHh------cCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 510 AEAQKLA------KGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 510 ~~~~~l~------~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
+++..+. ....+.|- |...+....+... .-..+++||||=.|.+..
T Consensus 333 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 333 DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcCC
Confidence 3333322 12345553 3333433332211 114589999999998863
No 497
>PF12846 AAA_10: AAA-like domain
Probab=80.89 E-value=1.6 Score=46.84 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
.+++|.|+||+|||......+.+.+ . .+..++++=|..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~-~------~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLI-R------RGPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-H------cCCCEEEEcCCchH
Confidence 5789999999999987664444443 2 35667777555443
No 498
>PRK09165 replicative DNA helicase; Provisional
Probab=80.85 E-value=13 Score=43.41 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCC--------CCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeC
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM--------PRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMG 504 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~--------~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~g 504 (838)
|.-++|.|.+|.|||..++--+........+. ...+..++|++.- .=..|+..++-.... ++....+..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s--~v~~~~i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQS--EISSSKIRR 293 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhc
Confidence 45588899999999987655554443221110 0125667777532 223444444333221 222211222
Q ss_pred CcchHHHHHHHhc------CCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCccc
Q psy12983 505 GASRQAEAQKLAK------GINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 505 g~~~~~~~~~l~~------~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~ 556 (838)
+.-..+++..+.. ..++.|- |++.+...++... .-..+++||||=.|.+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcc
Confidence 2222233332221 2345543 4455544443321 11358999999999775
No 499
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=80.52 E-value=28 Score=39.85 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=66.7
Q ss_pred HHHHHhcCCCeEEEEecchhhHHHHHHHhhcC-C---CCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc------CCc
Q psy12983 634 FTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI-D---LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD------VAA 703 (838)
Q Consensus 634 ~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~-~---~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~------~~~ 703 (838)
...+....+ ++|+..+|+--+...++.+.+. + -.++.+.|..++++|...... .+|+|+|+ +.+
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~ 124 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKA 124 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhc
Confidence 334444455 8999999998887777777654 3 368899999999999887543 57999995 344
Q ss_pred cCCCCCCccEEEEeCCCC--CHHHHHHHhcccCc
Q psy12983 704 RGLDIPAVDWIVQYDPPD--DPKEYIHRVGRTAR 735 (838)
Q Consensus 704 ~GiDip~v~~VI~~d~p~--s~~~y~Qr~GRagR 735 (838)
-=+|+.++.++|...+.. +--.|++-+-.--|
T Consensus 125 Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 125 GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred CccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 458999999988655443 23345555544444
No 500
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.47 E-value=5.4 Score=49.72 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHcC---------------CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy12983 423 QARTIPPLLEG---------------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGV 487 (838)
Q Consensus 423 Q~~ai~~i~~~---------------~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~ 487 (838)
|..++..+.+. ..+++.||||+|||..+-..+-.. ..+...++.....+......
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--------~~~~~~~~~~dmse~~~~~~-- 640 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--------YGGEQNLITINMSEFQEAHT-- 640 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--------hCCCcceEEEeHHHhhhhhh--
Q ss_pred HHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcCh---------HHHHHHHhcCcccccCCceEEEEeCCCccccc
Q psy12983 488 LKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATP---------GRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558 (838)
Q Consensus 488 l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp---------~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~ 558 (838)
..-+++.| +.|.+.++..+ .++|+|||++.+...
T Consensus 641 -------------------------------~~~l~g~~~gyvg~~~~g~L~~~v~~~p------~svvllDEieka~~~ 683 (852)
T TIGR03345 641 -------------------------------VSRLKGSPPGYVGYGEGGVLTEAVRRKP------YSVVLLDEVEKAHPD 683 (852)
T ss_pred -------------------------------hccccCCCCCcccccccchHHHHHHhCC------CcEEEEechhhcCHH
Q ss_pred CcHHHHHHHHHHCC-----------ccceEEEEe
Q psy12983 559 GFEEDMKQIVNLLP-----------KRRQTMLFS 581 (838)
Q Consensus 559 gf~~~~~~il~~l~-----------~~~qil~lS 581 (838)
....+..++..-. .+.-+|+.|
T Consensus 684 -v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 684 -VLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred -HHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Done!