Query psy12983
Match_columns 838
No_of_seqs 695 out of 5276
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:08:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.8E-53 6.2E-58 485.2 44.7 368 393-768 55-430 (434)
2 3sqw_A ATP-dependent RNA helic 100.0 1.9E-51 6.5E-56 485.8 39.2 432 394-833 17-477 (579)
3 2i4i_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 458.5 40.3 359 394-759 15-392 (417)
4 3i5x_A ATP-dependent RNA helic 100.0 5E-51 1.7E-55 481.2 37.3 432 394-833 68-528 (563)
5 2j0s_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 457.8 38.4 367 394-771 37-405 (410)
6 1s2m_A Putative ATP-dependent 100.0 1.5E-49 5.1E-54 447.9 41.0 366 393-770 20-386 (400)
7 1xti_A Probable ATP-dependent 100.0 6.3E-49 2.1E-53 441.1 41.7 369 393-771 7-380 (391)
8 3eiq_A Eukaryotic initiation f 100.0 1.8E-49 6.3E-54 448.9 35.6 367 394-771 40-409 (414)
9 1hv8_A Putative ATP-dependent 100.0 2.2E-48 7.6E-53 432.1 39.7 358 394-769 6-365 (367)
10 3pey_A ATP-dependent RNA helic 100.0 3.3E-48 1.1E-52 435.2 38.8 377 394-785 5-392 (395)
11 3fht_A ATP-dependent RNA helic 100.0 3.3E-48 1.1E-52 438.1 36.6 364 392-768 23-399 (412)
12 1fuu_A Yeast initiation factor 100.0 6.7E-49 2.3E-53 441.1 20.0 362 394-767 21-384 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 8.1E-49 2.8E-53 453.0 17.7 356 392-760 90-457 (479)
14 2z0m_A 337AA long hypothetical 100.0 3E-46 1E-50 410.2 36.8 332 403-760 1-332 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 5.6E-46 1.9E-50 436.4 35.6 346 394-760 19-384 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 5.7E-46 2E-50 431.9 33.8 340 395-761 3-354 (523)
17 3oiy_A Reverse gyrase helicase 100.0 1.3E-44 4.5E-49 409.9 28.4 324 406-760 9-373 (414)
18 3fho_A ATP-dependent RNA helic 100.0 6.8E-45 2.3E-49 422.5 20.3 353 403-768 126-490 (508)
19 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-41 6.5E-46 398.2 29.1 332 415-754 4-512 (556)
20 2va8_A SSO2462, SKI2-type heli 100.0 2.7E-40 9.2E-45 400.1 37.8 340 393-752 7-410 (715)
21 2zj8_A DNA helicase, putative 100.0 1.7E-40 5.9E-45 401.9 33.3 334 395-752 2-389 (720)
22 3l9o_A ATP-dependent RNA helic 100.0 3.5E-41 1.2E-45 419.6 27.2 325 413-761 179-609 (1108)
23 3tbk_A RIG-I helicase domain; 100.0 1E-40 3.5E-45 391.6 28.7 336 418-758 4-515 (555)
24 4ddu_A Reverse gyrase; topoiso 100.0 1E-40 3.5E-45 415.3 29.7 322 408-760 68-500 (1104)
25 2ykg_A Probable ATP-dependent 100.0 7E-41 2.4E-45 404.5 27.2 345 409-758 4-524 (696)
26 2p6r_A Afuhel308 helicase; pro 100.0 9.7E-41 3.3E-45 402.9 28.1 340 395-752 2-390 (702)
27 1tf5_A Preprotein translocase 100.0 8.7E-40 3E-44 384.0 31.9 325 413-752 79-547 (844)
28 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-40 1.5E-44 402.3 30.0 335 414-753 244-752 (797)
29 2eyq_A TRCF, transcription-rep 100.0 4.2E-40 1.4E-44 412.3 29.4 386 333-751 512-923 (1151)
30 2xgj_A ATP-dependent RNA helic 100.0 3.1E-39 1.1E-43 398.8 35.9 324 413-761 82-511 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 2.2E-38 7.4E-43 364.3 36.1 325 418-753 9-478 (494)
32 1gm5_A RECG; helicase, replica 100.0 7E-40 2.4E-44 392.6 24.0 321 405-753 356-700 (780)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-38 3.6E-43 394.4 31.5 335 414-753 244-752 (936)
34 4a4z_A Antiviral helicase SKI2 100.0 1.5E-38 5.2E-43 392.7 32.7 329 413-760 35-504 (997)
35 4f92_B U5 small nuclear ribonu 100.0 1.9E-38 6.4E-43 408.0 34.8 352 403-767 911-1325(1724)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 4.2E-39 1.4E-43 401.1 26.2 316 413-760 53-464 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 2.3E-38 7.8E-43 407.2 28.9 346 415-767 76-490 (1724)
38 4gl2_A Interferon-induced heli 100.0 2E-39 6.8E-44 392.0 17.1 329 418-751 7-520 (699)
39 2fsf_A Preprotein translocase 100.0 1.5E-37 5.2E-42 363.8 31.7 322 414-752 71-585 (853)
40 1nkt_A Preprotein translocase 100.0 1.2E-36 4.3E-41 356.2 35.6 324 414-752 108-619 (922)
41 1yks_A Genome polyprotein [con 100.0 6.8E-40 2.3E-44 373.0 1.7 353 429-836 4-389 (440)
42 2whx_A Serine protease/ntpase/ 100.0 1.5E-39 5E-44 383.2 4.2 372 416-835 169-567 (618)
43 2oca_A DAR protein, ATP-depend 100.0 1.2E-37 4.3E-42 362.3 18.6 312 417-748 112-453 (510)
44 2jlq_A Serine protease subunit 100.0 5.9E-38 2E-42 358.5 15.6 370 415-835 1-400 (451)
45 2fwr_A DNA repair protein RAD2 100.0 1.4E-35 4.8E-40 341.6 22.1 294 418-750 93-454 (472)
46 2z83_A Helicase/nucleoside tri 100.0 1.1E-37 3.6E-42 357.0 4.1 356 427-836 15-403 (459)
47 2wv9_A Flavivirin protease NS2 100.0 1.1E-36 3.8E-41 360.8 9.3 301 413-759 205-545 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 4.4E-35 1.5E-39 342.0 15.6 279 418-754 217-518 (666)
49 2xau_A PRE-mRNA-splicing facto 100.0 3.4E-34 1.1E-38 345.7 20.5 332 394-752 72-445 (773)
50 2v6i_A RNA helicase; membrane, 100.0 7.7E-34 2.7E-38 322.4 21.9 271 432-748 1-289 (431)
51 3h1t_A Type I site-specific re 100.0 1.3E-32 4.4E-37 325.7 22.9 303 418-736 178-543 (590)
52 3ly5_A ATP-dependent RNA helic 100.0 2.5E-32 8.5E-37 289.4 21.2 213 391-603 49-261 (262)
53 3dmq_A RNA polymerase-associat 100.0 5E-32 1.7E-36 335.2 26.0 320 418-747 153-610 (968)
54 3rc3_A ATP-dependent RNA helic 100.0 2.7E-32 9.4E-37 322.2 21.0 285 429-761 151-455 (677)
55 3fe2_A Probable ATP-dependent 100.0 4.2E-31 1.4E-35 276.7 23.6 210 394-607 29-239 (242)
56 3ber_A Probable ATP-dependent 100.0 2.8E-30 9.6E-35 271.5 24.6 205 394-605 43-247 (249)
57 2pl3_A Probable ATP-dependent 100.0 2.6E-30 9E-35 269.4 22.6 209 394-606 25-233 (236)
58 3iuy_A Probable ATP-dependent 100.0 4E-30 1.4E-34 266.5 20.9 205 394-603 19-226 (228)
59 1vec_A ATP-dependent RNA helic 100.0 1E-29 3.4E-34 259.0 23.3 201 394-602 3-204 (206)
60 1q0u_A Bstdead; DEAD protein, 100.0 4.2E-30 1.4E-34 264.7 17.7 205 394-606 4-212 (219)
61 1z63_A Helicase of the SNF2/RA 100.0 1.4E-29 4.9E-34 293.6 23.7 310 418-750 37-453 (500)
62 3fmo_B ATP-dependent RNA helic 100.0 6.7E-30 2.3E-34 275.9 19.2 205 392-606 90-298 (300)
63 3jux_A Protein translocase sub 100.0 4.1E-27 1.4E-31 270.1 41.8 318 414-752 72-589 (822)
64 3bor_A Human initiation factor 100.0 9.6E-30 3.3E-34 265.4 18.4 205 394-606 30-235 (237)
65 1wrb_A DJVLGB; RNA helicase, D 100.0 1.8E-29 6.3E-34 265.9 20.4 211 393-607 22-241 (253)
66 2oxc_A Probable ATP-dependent 100.0 2.5E-29 8.6E-34 261.0 21.0 204 393-605 23-228 (230)
67 2gxq_A Heat resistant RNA depe 100.0 5.7E-29 1.9E-33 253.6 21.8 204 395-605 2-205 (207)
68 1qde_A EIF4A, translation init 100.0 4E-29 1.4E-33 258.2 19.9 204 394-606 14-217 (224)
69 1t6n_A Probable ATP-dependent 100.0 1.6E-28 5.6E-33 252.9 20.8 202 394-603 14-218 (220)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.2E-27 4.2E-32 293.7 27.0 313 418-748 271-707 (1038)
71 3dkp_A Probable ATP-dependent 100.0 2.8E-28 9.7E-33 255.5 17.9 210 394-607 25-242 (245)
72 1z3i_X Similar to RAD54-like; 100.0 1.3E-26 4.5E-31 275.7 33.4 324 418-750 55-528 (644)
73 3mwy_W Chromo domain-containin 100.0 1.1E-26 3.9E-31 283.1 30.3 329 418-760 236-696 (800)
74 1c4o_A DNA nucleotide excision 99.9 1.1E-24 3.7E-29 259.1 26.2 130 628-759 423-559 (664)
75 2ipc_A Preprotein translocase 99.9 5.1E-23 1.8E-27 240.3 37.7 131 414-556 76-215 (997)
76 2hjv_A ATP-dependent RNA helic 99.9 3.7E-24 1.3E-28 209.7 19.5 153 613-766 6-159 (163)
77 2d7d_A Uvrabc system protein B 99.9 8.7E-24 3E-28 251.2 24.2 129 628-758 429-564 (661)
78 2rb4_A ATP-dependent RNA helic 99.9 7.7E-24 2.6E-28 210.0 19.6 156 613-769 4-167 (175)
79 3eaq_A Heat resistant RNA depe 99.9 2.2E-23 7.5E-28 213.3 20.1 151 617-768 6-157 (212)
80 1t5i_A C_terminal domain of A 99.9 1.1E-23 3.7E-28 208.2 17.2 155 614-769 3-159 (172)
81 1fuk_A Eukaryotic initiation f 99.9 1.2E-23 4E-28 206.6 16.8 155 616-771 3-159 (165)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.9E-23 9.8E-28 207.7 16.9 148 612-760 15-163 (185)
83 3i32_A Heat resistant RNA depe 99.9 1.1E-22 3.6E-27 218.3 20.2 151 617-768 3-154 (300)
84 2p6n_A ATP-dependent RNA helic 99.9 5E-23 1.7E-27 206.9 16.5 158 599-760 14-172 (191)
85 2yjt_D ATP-dependent RNA helic 99.8 1.9E-23 6.4E-28 206.2 0.0 144 616-760 3-147 (170)
86 3b6e_A Interferon-induced heli 99.8 1.3E-21 4.5E-26 200.0 10.4 168 414-583 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.8 4.8E-20 1.7E-24 214.7 18.0 100 640-745 382-517 (540)
88 1rif_A DAR protein, DNA helica 99.8 8.8E-20 3E-24 195.1 10.4 159 418-593 113-271 (282)
89 3crv_A XPD/RAD3 related DNA he 99.8 5.9E-18 2E-22 197.8 25.0 132 415-557 1-187 (551)
90 3llm_A ATP-dependent RNA helic 99.8 1.9E-18 6.5E-23 179.6 14.3 171 406-588 49-222 (235)
91 2fz4_A DNA repair protein RAD2 99.7 8.4E-17 2.9E-21 167.2 16.0 138 418-587 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 2.3E-15 8E-20 177.3 23.1 81 418-504 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 1.6E-15 5.4E-20 160.5 12.3 125 625-750 93-224 (271)
94 1xcr_A Hypothetical protein PT 99.4 1.7E-13 6E-18 139.7 4.8 168 142-320 20-235 (316)
95 2db3_A ATP-dependent RNA helic 99.2 4.5E-11 1.6E-15 135.4 9.6 186 73-284 136-347 (434)
96 2i4i_A ATP-dependent RNA helic 98.7 1.2E-08 4.1E-13 114.4 8.6 151 102-273 148-314 (417)
97 2j0s_A ATP-dependent RNA helic 98.7 1E-08 3.5E-13 114.8 7.0 176 73-273 112-314 (410)
98 3fmp_B ATP-dependent RNA helic 98.6 1.5E-08 5.1E-13 116.1 3.5 146 103-272 208-370 (479)
99 3fht_A ATP-dependent RNA helic 98.6 1.9E-07 6.5E-12 104.2 11.9 147 103-273 141-304 (412)
100 3eiq_A Eukaryotic initiation f 98.5 6.4E-08 2.2E-12 108.2 7.1 154 104-284 158-327 (414)
101 1w36_D RECD, exodeoxyribonucle 98.5 1.6E-07 5.4E-12 110.5 10.6 146 419-583 150-298 (608)
102 1xti_A Probable ATP-dependent 98.5 2.4E-07 8.1E-12 102.7 9.5 176 73-272 83-287 (391)
103 3fmo_B ATP-dependent RNA helic 98.4 9.6E-08 3.3E-12 102.4 3.5 83 103-207 208-297 (300)
104 3sqw_A ATP-dependent RNA helic 98.4 1.1E-07 3.8E-12 111.6 4.0 155 104-273 149-329 (579)
105 3i5x_A ATP-dependent RNA helic 98.3 1.7E-07 5.8E-12 109.6 3.4 156 103-273 199-380 (563)
106 1s2m_A Putative ATP-dependent 98.3 1E-06 3.4E-11 98.1 9.4 175 73-273 96-296 (400)
107 3pey_A ATP-dependent RNA helic 98.3 3E-06 1E-10 93.6 12.5 175 73-272 82-280 (395)
108 3fe2_A Probable ATP-dependent 98.2 2.7E-07 9.3E-12 95.5 1.0 113 73-208 109-238 (242)
109 1wrb_A DJVLGB; RNA helicase, D 98.2 5.3E-07 1.8E-11 93.9 2.5 128 73-223 107-253 (253)
110 3ber_A Probable ATP-dependent 98.2 3.4E-07 1.2E-11 95.3 0.9 113 73-207 118-247 (249)
111 1fuu_A Yeast initiation factor 98.1 7.5E-07 2.6E-11 98.7 2.6 175 73-272 96-296 (394)
112 1hv8_A Putative ATP-dependent 98.1 4.3E-06 1.5E-10 91.4 8.4 191 53-273 55-276 (367)
113 3ly5_A ATP-dependent RNA helic 98.0 4.3E-07 1.5E-11 95.2 -2.3 82 102-204 173-260 (262)
114 1tf5_A Preprotein translocase 97.9 4.4E-07 1.5E-11 107.5 -4.0 51 223-273 409-470 (844)
115 2pl3_A Probable ATP-dependent 97.9 2.1E-06 7.1E-11 88.3 1.5 114 72-207 103-232 (236)
116 3bor_A Human initiation factor 97.9 2.5E-06 8.6E-11 87.8 2.0 112 73-207 105-234 (237)
117 3dkp_A Probable ATP-dependent 97.9 5.3E-06 1.8E-10 85.7 4.5 115 73-208 105-241 (245)
118 3iuy_A Probable ATP-dependent 97.9 1.9E-06 6.5E-11 88.1 0.6 111 73-206 101-227 (228)
119 1q0u_A Bstdead; DEAD protein, 97.9 3.7E-06 1.3E-10 85.4 2.6 87 98-207 119-211 (219)
120 4ddu_A Reverse gyrase; topoiso 97.8 1.1E-06 3.9E-11 109.6 -2.4 169 105-304 174-376 (1104)
121 3upu_A ATP-dependent DNA helic 97.8 5.7E-05 1.9E-09 85.7 11.6 140 412-582 19-163 (459)
122 3fho_A ATP-dependent RNA helic 97.8 2.2E-05 7.4E-10 90.5 7.8 143 105-272 235-394 (508)
123 2fsf_A Preprotein translocase 97.8 2.8E-06 9.6E-11 100.4 0.1 48 223-270 418-476 (853)
124 2gk6_A Regulator of nonsense t 97.8 0.00017 5.8E-09 85.0 14.7 69 416-490 178-246 (624)
125 3e1s_A Exodeoxyribonuclease V, 97.8 8.2E-05 2.8E-09 86.5 11.4 123 418-583 189-315 (574)
126 2z0m_A 337AA long hypothetical 97.7 8.2E-05 2.8E-09 80.1 10.0 140 104-273 104-254 (337)
127 2xzl_A ATP-dependent helicase 97.7 0.00019 6.7E-09 86.6 13.8 70 416-491 358-427 (802)
128 3oiy_A Reverse gyrase helicase 97.7 3.4E-06 1.2E-10 94.4 -2.4 140 105-268 117-286 (414)
129 2gxq_A Heat resistant RNA depe 97.6 6.4E-06 2.2E-10 82.5 -0.3 112 73-207 79-205 (207)
130 1gku_B Reverse gyrase, TOP-RG; 97.6 5.5E-06 1.9E-10 103.4 -1.6 129 105-270 155-309 (1054)
131 2oxc_A Probable ATP-dependent 97.6 1.1E-05 3.8E-10 82.5 0.7 81 104-207 141-228 (230)
132 2wjy_A Regulator of nonsense t 97.6 0.00047 1.6E-08 83.1 14.4 69 416-490 354-422 (800)
133 4b3f_X DNA-binding protein smu 97.5 0.00014 4.9E-09 86.1 9.2 66 418-490 189-255 (646)
134 1qde_A EIF4A, translation init 97.5 2.8E-05 9.5E-10 79.0 2.6 81 104-207 130-216 (224)
135 1vec_A ATP-dependent RNA helic 97.5 2E-05 6.8E-10 78.9 0.8 80 103-205 120-205 (206)
136 1nkt_A Preprotein translocase 97.5 5.9E-06 2E-10 97.9 -3.6 48 223-270 437-495 (922)
137 1t6n_A Probable ATP-dependent 97.4 2E-05 7E-10 79.8 -0.7 80 104-206 133-219 (220)
138 3l9o_A ATP-dependent RNA helic 97.3 0.00027 9.3E-09 88.3 7.9 111 73-206 234-352 (1108)
139 3lfu_A DNA helicase II; SF1 he 97.2 0.0085 2.9E-07 70.8 19.6 72 417-493 8-79 (647)
140 2v1x_A ATP-dependent DNA helic 97.0 0.0015 5E-08 76.4 9.9 151 104-273 135-305 (591)
141 2o0j_A Terminase, DNA packagin 96.8 0.016 5.4E-07 63.5 15.2 73 418-495 163-235 (385)
142 3hgt_A HDA1 complex subunit 3; 96.7 0.0082 2.8E-07 63.6 11.9 124 626-754 107-241 (328)
143 2p6n_A ATP-dependent RNA helic 96.6 0.0029 1E-07 62.5 7.2 76 194-273 8-92 (191)
144 3cpe_A Terminase, DNA packagin 96.3 0.06 2.1E-06 62.8 17.1 74 418-496 163-236 (592)
145 1t5i_A C_terminal domain of A 96.3 0.0074 2.5E-07 58.4 7.9 59 215-273 2-69 (172)
146 2hjv_A ATP-dependent RNA helic 96.2 0.011 3.8E-07 56.4 8.5 60 214-273 5-73 (163)
147 2rb4_A ATP-dependent RNA helic 96.2 0.0095 3.2E-07 57.7 7.8 60 214-273 3-72 (175)
148 3o8b_A HCV NS3 protease/helica 96.2 0.0031 1.1E-07 73.9 4.9 128 99-273 291-434 (666)
149 3ec2_A DNA replication protein 96.1 0.022 7.5E-07 55.2 9.8 32 420-451 16-56 (180)
150 2orw_A Thymidine kinase; TMTK, 95.9 0.019 6.4E-07 56.2 8.5 40 432-478 2-41 (184)
151 4a4z_A Antiviral helicase SKI2 95.9 0.0046 1.6E-07 76.5 5.1 70 104-196 122-197 (997)
152 2xgj_A ATP-dependent RNA helic 95.9 0.02 6.8E-07 70.9 10.7 79 104-206 167-254 (1010)
153 2whx_A Serine protease/ntpase/ 95.8 0.00083 2.8E-08 78.8 -2.1 100 134-268 275-388 (618)
154 1oyw_A RECQ helicase, ATP-depe 95.7 0.012 4E-07 67.7 6.8 90 176-273 174-274 (523)
155 1fuk_A Eukaryotic initiation f 95.6 0.02 6.7E-07 54.8 7.1 57 217-273 2-68 (165)
156 1xx6_A Thymidine kinase; NESG, 95.5 0.022 7.7E-07 56.0 7.3 39 433-478 8-46 (191)
157 2jgn_A DBX, DDX3, ATP-dependen 95.5 0.021 7.2E-07 55.9 7.0 60 213-272 14-83 (185)
158 3llm_A ATP-dependent RNA helic 95.5 0.0015 5.2E-08 66.7 -1.4 75 104-203 154-232 (235)
159 2kjq_A DNAA-related protein; s 95.4 0.014 4.8E-07 55.0 4.9 19 432-450 35-53 (149)
160 2j9r_A Thymidine kinase; TK1, 95.1 0.019 6.5E-07 57.3 5.2 40 433-479 28-67 (214)
161 2b8t_A Thymidine kinase; deoxy 95.0 0.013 4.5E-07 59.2 3.7 114 432-582 11-124 (223)
162 3te6_A Regulatory protein SIR3 94.8 0.13 4.3E-06 54.8 10.8 26 433-459 45-70 (318)
163 1a5t_A Delta prime, HOLB; zinc 94.6 0.046 1.6E-06 58.8 6.9 36 419-454 3-45 (334)
164 2ykg_A Probable ATP-dependent 94.5 0.0088 3E-07 71.3 1.1 63 73-141 68-141 (696)
165 1yks_A Genome polyprotein [con 94.4 0.0011 3.9E-08 74.5 -6.4 73 175-268 129-210 (440)
166 3vkw_A Replicase large subunit 94.4 0.081 2.8E-06 58.7 8.5 108 434-583 162-269 (446)
167 1l8q_A Chromosomal replication 94.4 0.094 3.2E-06 55.9 8.9 19 433-451 37-55 (324)
168 2orv_A Thymidine kinase; TP4A 94.3 0.074 2.5E-06 53.5 7.3 41 432-479 18-58 (234)
169 1pjr_A PCRA; DNA repair, DNA r 94.2 0.088 3E-06 62.9 8.8 72 417-493 10-81 (724)
170 1w4r_A Thymidine kinase; type 94.1 0.046 1.6E-06 53.6 5.0 38 433-477 20-57 (195)
171 2chg_A Replication factor C sm 94.0 0.33 1.1E-05 47.7 11.6 41 542-583 101-141 (226)
172 1uaa_A REP helicase, protein ( 93.8 0.064 2.2E-06 63.6 6.5 71 418-493 2-72 (673)
173 3u4q_A ATP-dependent helicase/ 93.5 0.1 3.5E-06 66.2 8.2 73 418-493 10-82 (1232)
174 3u61_B DNA polymerase accessor 93.5 0.13 4.5E-06 54.7 7.9 41 542-582 104-144 (324)
175 3i32_A Heat resistant RNA depe 93.5 0.15 5E-06 54.0 8.0 56 218-273 2-66 (300)
176 2xau_A PRE-mRNA-splicing facto 93.5 0.045 1.6E-06 65.8 4.6 141 103-272 183-351 (773)
177 1d2n_A N-ethylmaleimide-sensit 93.4 0.37 1.3E-05 49.8 11.0 19 434-452 65-83 (272)
178 3kl4_A SRP54, signal recogniti 93.3 0.6 2.1E-05 51.7 12.9 130 434-594 98-233 (433)
179 2z4s_A Chromosomal replication 93.1 0.34 1.2E-05 54.1 10.7 41 543-583 194-236 (440)
180 1jbk_A CLPB protein; beta barr 93.0 0.92 3.2E-05 43.1 12.6 18 434-451 44-61 (195)
181 2p65_A Hypothetical protein PF 93.0 0.33 1.1E-05 46.3 9.2 21 433-453 43-63 (187)
182 3co5_A Putative two-component 93.0 0.12 4E-06 48.0 5.7 20 431-450 25-44 (143)
183 2wv9_A Flavivirin protease NS2 92.8 0.0064 2.2E-07 71.9 -4.1 73 175-268 362-443 (673)
184 3e2i_A Thymidine kinase; Zn-bi 92.8 0.11 3.8E-06 51.7 5.5 41 432-479 27-67 (219)
185 2zpa_A Uncharacterized protein 92.7 0.15 5.2E-06 59.4 7.3 114 418-586 175-290 (671)
186 2yjt_D ATP-dependent RNA helic 91.5 0.025 8.4E-07 54.4 0.0 56 217-272 2-67 (170)
187 3bos_A Putative DNA replicatio 92.2 0.15 5.1E-06 51.2 5.7 20 432-451 51-70 (242)
188 2va8_A SSO2462, SKI2-type heli 92.1 0.25 8.7E-06 58.8 8.4 71 103-197 119-195 (715)
189 2w58_A DNAI, primosome compone 92.0 0.26 8.9E-06 48.3 7.2 18 434-451 55-72 (202)
190 4a2p_A RIG-I, retinoic acid in 91.9 0.13 4.4E-06 59.1 5.3 99 73-187 62-177 (556)
191 2qby_B CDC6 homolog 3, cell di 91.8 0.33 1.1E-05 52.7 8.4 18 434-451 46-63 (384)
192 3dm5_A SRP54, signal recogniti 91.5 1.3 4.4E-05 49.2 12.6 130 434-594 101-234 (443)
193 2jlq_A Serine protease subunit 91.4 0.047 1.6E-06 61.4 1.0 76 174-270 139-223 (451)
194 2v1u_A Cell division control p 91.3 1.1 3.7E-05 48.4 11.8 19 433-451 44-62 (387)
195 1iqp_A RFCS; clamp loader, ext 91.2 0.67 2.3E-05 48.9 9.8 40 542-582 109-148 (327)
196 3eaq_A Heat resistant RNA depe 91.2 0.31 1E-05 48.5 6.6 55 219-273 6-69 (212)
197 1njg_A DNA polymerase III subu 90.7 2.6 8.9E-05 41.5 13.2 17 435-451 47-63 (250)
198 2d7d_A Uvrabc system protein B 90.5 0.32 1.1E-05 57.3 7.1 89 175-274 385-484 (661)
199 1gm5_A RECG; helicase, replica 90.5 0.38 1.3E-05 57.6 7.7 81 641-721 416-501 (780)
200 3syl_A Protein CBBX; photosynt 90.4 0.21 7.3E-06 52.5 5.0 19 434-452 68-86 (309)
201 2p6r_A Afuhel308 helicase; pro 90.3 0.3 1E-05 58.1 6.6 75 103-197 112-192 (702)
202 2zj8_A DNA helicase, putative 90.3 0.3 1E-05 58.2 6.6 72 103-197 112-189 (720)
203 3eie_A Vacuolar protein sortin 89.7 0.45 1.5E-05 50.6 6.8 18 434-451 52-69 (322)
204 3h4m_A Proteasome-activating n 89.7 0.81 2.8E-05 47.4 8.7 19 432-450 50-68 (285)
205 1sxj_B Activator 1 37 kDa subu 89.6 0.6 2E-05 49.1 7.7 39 543-582 107-145 (323)
206 1sxj_D Activator 1 41 kDa subu 89.6 1.4 4.7E-05 47.0 10.7 39 543-582 133-171 (353)
207 1sxj_E Activator 1 40 kDa subu 89.5 0.55 1.9E-05 50.4 7.4 43 542-585 133-175 (354)
208 1fnn_A CDC6P, cell division co 89.4 0.92 3.2E-05 49.1 9.2 16 435-450 46-61 (389)
209 2q6t_A DNAB replication FORK h 89.3 1.4 4.9E-05 49.0 10.8 116 432-558 199-325 (444)
210 2qby_A CDC6 homolog 1, cell di 89.2 1.3 4.3E-05 47.8 10.1 19 433-451 45-63 (386)
211 2z83_A Helicase/nucleoside tri 89.2 0.064 2.2E-06 60.4 -0.4 73 175-268 142-223 (459)
212 3pfi_A Holliday junction ATP-d 89.0 1.1 3.6E-05 47.8 9.1 18 434-451 56-73 (338)
213 1g5t_A COB(I)alamin adenosyltr 88.8 1.1 3.6E-05 44.0 8.0 135 433-591 28-170 (196)
214 4a2q_A RIG-I, retinoic acid in 88.7 0.26 9E-06 59.5 4.5 102 73-187 303-418 (797)
215 2r6a_A DNAB helicase, replicat 88.6 1.5 5.2E-05 49.0 10.4 39 432-476 202-240 (454)
216 4a2w_A RIG-I, retinoic acid in 88.2 0.4 1.4E-05 58.9 5.7 102 73-187 303-418 (936)
217 1c4o_A DNA nucleotide excision 88.0 0.6 2.1E-05 55.0 6.8 89 175-274 379-478 (664)
218 1jr3_A DNA polymerase III subu 87.8 1.9 6.5E-05 46.3 10.3 39 542-581 118-156 (373)
219 1wp9_A ATP-dependent RNA helic 87.6 0.7 2.4E-05 51.3 6.8 39 229-267 342-393 (494)
220 1xwi_A SKD1 protein; VPS4B, AA 87.5 0.9 3.1E-05 48.3 7.3 18 434-451 46-63 (322)
221 2qz4_A Paraplegin; AAA+, SPG7, 87.5 2.4 8.2E-05 42.9 10.4 19 433-451 39-57 (262)
222 1hqc_A RUVB; extended AAA-ATPa 87.0 1.1 3.8E-05 47.2 7.6 18 434-451 39-56 (324)
223 2qp9_X Vacuolar protein sortin 86.9 1.2 4E-05 48.1 7.9 18 434-451 85-102 (355)
224 3pvs_A Replication-associated 86.8 0.86 3E-05 50.9 6.9 18 434-451 51-68 (447)
225 1sxj_C Activator 1 40 kDa subu 86.7 1.3 4.4E-05 47.3 8.1 39 542-581 109-147 (340)
226 3vfd_A Spastin; ATPase, microt 86.6 1.3 4.5E-05 48.3 8.2 19 433-451 148-166 (389)
227 2gno_A DNA polymerase III, gam 86.4 1 3.6E-05 47.4 6.9 39 542-581 81-119 (305)
228 4b4t_J 26S protease regulatory 86.4 4.3 0.00015 44.3 11.9 19 433-451 182-200 (405)
229 4a1f_A DNAB helicase, replicat 86.3 1.1 3.7E-05 48.0 7.0 114 432-557 45-170 (338)
230 1sxj_A Activator 1 95 kDa subu 86.0 1.9 6.5E-05 49.0 9.4 42 542-585 147-190 (516)
231 2fwr_A DNA repair protein RAD2 85.8 0.056 1.9E-06 61.0 -3.6 46 227-272 332-381 (472)
232 2oca_A DAR protein, ATP-depend 85.5 0.2 6.9E-06 57.0 0.8 42 231-272 332-384 (510)
233 2chq_A Replication factor C sm 85.1 0.51 1.7E-05 49.6 3.7 17 435-451 40-56 (319)
234 3bh0_A DNAB-like replicative h 84.2 3.3 0.00011 43.8 9.6 51 432-490 67-117 (315)
235 1w5s_A Origin recognition comp 83.4 2.9 9.8E-05 45.5 9.0 18 434-451 51-70 (412)
236 2eyq_A TRCF, transcription-rep 83.0 2.5 8.5E-05 53.0 9.2 80 640-719 650-734 (1151)
237 3hu3_A Transitional endoplasmi 82.8 1.8 6E-05 48.9 7.1 43 544-586 298-350 (489)
238 2fna_A Conserved hypothetical 82.5 21 0.00072 37.4 15.4 36 545-581 139-177 (357)
239 2zan_A Vacuolar protein sortin 81.9 2 6.8E-05 47.9 7.1 19 433-451 167-185 (444)
240 4b4t_I 26S protease regulatory 81.7 7.8 0.00027 42.6 11.4 19 433-451 216-234 (437)
241 1n0w_A DNA repair protein RAD5 80.5 4.5 0.00015 40.3 8.6 24 432-455 23-46 (243)
242 3jux_A Protein translocase sub 79.9 3.1 0.00011 48.8 7.7 85 179-269 412-508 (822)
243 4b4t_K 26S protease regulatory 77.8 11 0.00036 41.6 11.0 19 433-451 206-224 (428)
244 3n70_A Transport activator; si 77.4 1.4 4.7E-05 40.6 3.3 21 431-451 22-42 (145)
245 1nlf_A Regulatory protein REPA 77.1 15 0.00051 37.6 11.5 26 430-455 27-52 (279)
246 3bgw_A DNAB-like replicative h 77.0 4.3 0.00015 45.1 7.7 38 432-476 196-233 (444)
247 4b4t_H 26S protease regulatory 76.5 3.5 0.00012 45.8 6.6 19 433-451 243-261 (467)
248 3rc3_A ATP-dependent RNA helic 76.3 1.2 4.2E-05 52.3 3.2 70 107-197 214-291 (677)
249 4gl2_A Interferon-induced heli 76.3 0.96 3.3E-05 53.5 2.3 63 73-141 63-141 (699)
250 3m6a_A ATP-dependent protease 76.0 3 0.0001 47.7 6.3 20 432-451 107-126 (543)
251 2ce7_A Cell division protein F 75.5 11 0.00038 42.1 10.6 18 434-451 50-67 (476)
252 2ehv_A Hypothetical protein PH 75.4 5.2 0.00018 40.0 7.3 25 430-454 27-51 (251)
253 1qvr_A CLPB protein; coiled co 75.3 4.5 0.00016 49.0 7.9 21 434-454 192-212 (854)
254 2z43_A DNA repair and recombin 75.3 4.7 0.00016 42.6 7.2 46 432-478 106-151 (324)
255 3pxi_A Negative regulator of g 74.7 6.2 0.00021 47.1 8.8 19 435-453 523-541 (758)
256 3cmu_A Protein RECA, recombina 72.9 3.1 0.00011 54.5 5.7 47 427-480 1415-1467(2050)
257 2qgz_A Helicase loader, putati 72.0 4.1 0.00014 42.8 5.7 22 433-454 152-173 (308)
258 3hjh_A Transcription-repair-co 71.7 6 0.0002 44.4 7.2 52 432-493 13-64 (483)
259 3cf2_A TER ATPase, transitiona 71.3 6.8 0.00023 46.8 7.8 17 434-450 239-255 (806)
260 3hr8_A Protein RECA; alpha and 70.9 3.3 0.00011 44.5 4.7 41 432-479 60-100 (356)
261 3io5_A Recombination and repai 70.6 3 0.0001 44.0 4.1 42 435-481 30-71 (333)
262 1r6b_X CLPA protein; AAA+, N-t 67.8 16 0.00053 43.5 10.2 21 433-453 207-227 (758)
263 3b85_A Phosphate starvation-in 67.8 5.3 0.00018 39.4 5.0 35 416-450 5-39 (208)
264 1ls1_A Signal recognition part 67.4 34 0.0012 35.4 11.5 23 432-454 97-119 (295)
265 2oap_1 GSPE-2, type II secreti 67.2 5.1 0.00018 45.3 5.4 37 411-449 239-276 (511)
266 1vma_A Cell division protein F 67.2 53 0.0018 34.2 13.0 22 433-454 104-125 (306)
267 1e9r_A Conjugal transfer prote 66.3 4.6 0.00016 44.6 4.8 44 432-482 52-95 (437)
268 2dr3_A UPF0273 protein PH0284; 65.2 3.9 0.00013 40.8 3.6 49 432-488 22-70 (247)
269 2l8b_A Protein TRAI, DNA helic 64.0 4.3 0.00015 39.0 3.3 58 420-483 36-95 (189)
270 1p9r_A General secretion pathw 63.8 6.9 0.00023 43.1 5.4 30 420-449 152-183 (418)
271 1q57_A DNA primase/helicase; d 63.6 11 0.00038 42.4 7.4 39 432-476 241-279 (503)
272 1ypw_A Transitional endoplasmi 63.5 19 0.00063 43.3 9.6 19 432-450 237-255 (806)
273 4b4t_M 26S protease regulatory 61.2 5 0.00017 44.3 3.7 19 433-451 215-233 (434)
274 3e70_C DPA, signal recognition 60.3 54 0.0018 34.5 11.6 52 543-594 211-263 (328)
275 1w36_B RECB, exodeoxyribonucle 59.6 11 0.00039 47.2 7.1 60 434-493 17-81 (1180)
276 1j8m_F SRP54, signal recogniti 59.0 66 0.0022 33.3 11.8 23 433-455 98-120 (297)
277 2zts_A Putative uncharacterize 58.2 6.2 0.00021 39.3 3.6 39 432-476 29-67 (251)
278 3lda_A DNA repair protein RAD5 58.1 10 0.00036 41.3 5.6 43 433-476 178-220 (400)
279 3a8t_A Adenylate isopentenyltr 57.5 4.2 0.00014 43.3 2.2 19 434-452 41-59 (339)
280 2bjv_A PSP operon transcriptio 57.1 6 0.0002 40.2 3.3 19 432-450 28-46 (265)
281 2qmh_A HPR kinase/phosphorylas 57.1 4.4 0.00015 39.7 2.1 18 433-450 34-51 (205)
282 3vaa_A Shikimate kinase, SK; s 56.4 4.9 0.00017 38.9 2.4 22 432-453 24-45 (199)
283 1kgd_A CASK, peripheral plasma 56.0 5.2 0.00018 38.1 2.4 19 432-450 4-22 (180)
284 2gza_A Type IV secretion syste 55.7 6.1 0.00021 42.6 3.2 20 430-449 172-191 (361)
285 2ffh_A Protein (FFH); SRP54, s 55.5 84 0.0029 34.4 12.3 23 433-455 98-120 (425)
286 3exa_A TRNA delta(2)-isopenten 55.4 4.8 0.00016 42.4 2.2 18 434-451 4-21 (322)
287 3jvv_A Twitching mobility prot 55.1 7.2 0.00025 41.9 3.6 18 432-449 122-139 (356)
288 3foz_A TRNA delta(2)-isopenten 55.0 4.9 0.00017 42.2 2.2 18 435-452 12-29 (316)
289 2w0m_A SSO2452; RECA, SSPF, un 55.0 9.2 0.00031 37.5 4.2 23 432-454 22-44 (235)
290 4ag6_A VIRB4 ATPase, type IV s 54.2 8.4 0.00029 41.8 4.1 41 432-479 34-74 (392)
291 3trf_A Shikimate kinase, SK; a 53.6 5.8 0.0002 37.7 2.3 22 433-454 5-26 (185)
292 2eyu_A Twitching motility prot 53.5 4.6 0.00016 41.3 1.7 21 430-450 22-42 (261)
293 3hws_A ATP-dependent CLP prote 53.2 10 0.00035 40.6 4.5 20 433-452 51-70 (363)
294 1ofh_A ATP-dependent HSL prote 53.0 19 0.00065 37.0 6.5 19 433-451 50-68 (310)
295 3tau_A Guanylate kinase, GMP k 52.6 6.2 0.00021 38.6 2.4 19 432-450 7-25 (208)
296 3cmw_A Protein RECA, recombina 52.4 20 0.00067 46.4 7.4 44 434-484 1432-1475(1706)
297 3nbx_X ATPase RAVA; AAA+ ATPas 52.3 6.3 0.00022 44.4 2.7 27 424-450 32-58 (500)
298 2ze6_A Isopentenyl transferase 52.1 5.9 0.0002 40.2 2.2 17 435-451 3-19 (253)
299 3iij_A Coilin-interacting nucl 51.9 5.4 0.00019 37.8 1.8 21 432-452 10-30 (180)
300 1qhx_A CPT, protein (chloramph 51.8 6.1 0.00021 37.2 2.2 19 433-451 3-21 (178)
301 2pt7_A CAG-ALFA; ATPase, prote 51.6 5.9 0.0002 42.1 2.2 20 430-449 168-187 (330)
302 2qor_A Guanylate kinase; phosp 51.5 6.1 0.00021 38.4 2.2 21 430-450 9-29 (204)
303 1lvg_A Guanylate kinase, GMP k 51.4 6.8 0.00023 38.0 2.5 19 432-450 3-21 (198)
304 3lw7_A Adenylate kinase relate 51.4 5.1 0.00017 37.3 1.5 17 435-451 3-19 (179)
305 2px0_A Flagellar biosynthesis 51.3 12 0.00039 39.1 4.4 24 432-455 104-127 (296)
306 2r44_A Uncharacterized protein 50.9 6.4 0.00022 41.5 2.4 24 428-451 41-64 (331)
307 2j41_A Guanylate kinase; GMP, 50.0 6.6 0.00023 37.9 2.1 20 431-450 4-23 (207)
308 1u0j_A DNA replication protein 49.8 22 0.00074 36.4 6.0 43 406-451 74-122 (267)
309 1zp6_A Hypothetical protein AT 49.2 5.6 0.00019 38.0 1.4 21 430-450 6-26 (191)
310 1ojl_A Transcriptional regulat 48.5 8.6 0.0003 40.2 2.9 19 432-450 24-42 (304)
311 3cf0_A Transitional endoplasmi 48.5 7.3 0.00025 40.6 2.3 20 432-451 48-67 (301)
312 3crm_A TRNA delta(2)-isopenten 48.2 7.3 0.00025 41.2 2.2 17 435-451 7-23 (323)
313 3b9p_A CG5977-PA, isoform A; A 48.0 7.3 0.00025 40.2 2.2 19 433-451 54-72 (297)
314 4akg_A Glutathione S-transfera 47.9 15 0.0005 49.9 5.5 49 404-453 891-943 (2695)
315 3tr0_A Guanylate kinase, GMP k 47.8 7.5 0.00026 37.5 2.1 19 432-450 6-24 (205)
316 1kag_A SKI, shikimate kinase I 47.7 8.9 0.00031 35.8 2.6 18 433-450 4-21 (173)
317 2cvh_A DNA repair and recombin 47.5 12 0.0004 36.4 3.6 24 432-455 19-42 (220)
318 3uk6_A RUVB-like 2; hexameric 47.5 9 0.00031 40.9 2.9 20 434-453 71-90 (368)
319 1y63_A LMAJ004144AAA protein; 46.9 8.6 0.00029 36.7 2.4 20 432-451 9-28 (184)
320 3vkg_A Dynein heavy chain, cyt 46.8 13 0.00043 51.1 4.6 48 403-451 873-924 (3245)
321 1kht_A Adenylate kinase; phosp 46.7 8.5 0.00029 36.5 2.3 20 433-452 3-22 (192)
322 2r8r_A Sensor protein; KDPD, P 46.4 14 0.00047 36.9 3.8 24 435-458 8-31 (228)
323 3t15_A Ribulose bisphosphate c 46.4 9.3 0.00032 39.6 2.7 19 434-452 37-55 (293)
324 2j37_W Signal recognition part 46.3 1.4E+02 0.0049 33.3 12.6 42 435-483 103-146 (504)
325 3d3q_A TRNA delta(2)-isopenten 46.3 8.1 0.00028 41.1 2.2 18 435-452 9-26 (340)
326 1lv7_A FTSH; alpha/beta domain 46.2 8.1 0.00028 39.0 2.2 19 433-451 45-63 (257)
327 3gk5_A Uncharacterized rhodane 46.1 15 0.00051 31.6 3.6 39 640-678 53-91 (108)
328 3tbk_A RIG-I helicase domain; 46.0 25 0.00086 39.4 6.5 73 642-718 52-135 (555)
329 3ney_A 55 kDa erythrocyte memb 45.6 9.4 0.00032 37.2 2.4 19 432-450 18-36 (197)
330 3eph_A TRNA isopentenyltransfe 45.6 10 0.00034 41.4 2.8 20 435-454 4-23 (409)
331 1z6g_A Guanylate kinase; struc 44.9 10 0.00036 37.3 2.7 20 430-449 20-39 (218)
332 1ex7_A Guanylate kinase; subst 44.8 8.1 0.00028 37.3 1.8 16 434-449 2-17 (186)
333 3kb2_A SPBC2 prophage-derived 44.6 9.4 0.00032 35.4 2.2 18 435-452 3-20 (173)
334 2zr9_A Protein RECA, recombina 44.5 16 0.00055 39.0 4.2 39 432-477 60-98 (349)
335 4b4t_L 26S protease subunit RP 44.5 14 0.00049 40.7 3.9 20 433-452 215-234 (437)
336 1um8_A ATP-dependent CLP prote 44.2 10 0.00034 40.9 2.6 20 433-452 72-91 (376)
337 3a00_A Guanylate kinase, GMP k 43.9 11 0.00037 36.0 2.6 17 434-450 2-18 (186)
338 2ius_A DNA translocase FTSK; n 43.8 23 0.00077 39.9 5.5 27 432-458 166-192 (512)
339 1u94_A RECA protein, recombina 43.6 16 0.00056 39.1 4.1 39 432-477 62-100 (356)
340 1cr0_A DNA primase/helicase; R 43.3 16 0.00054 37.7 3.9 40 430-475 32-71 (296)
341 2ewv_A Twitching motility prot 42.9 7.9 0.00027 41.8 1.5 20 430-449 133-152 (372)
342 4fcw_A Chaperone protein CLPB; 42.8 12 0.0004 38.8 2.8 18 434-451 48-65 (311)
343 3nwn_A Kinesin-like protein KI 42.7 14 0.00047 39.7 3.3 25 426-450 96-122 (359)
344 1ly1_A Polynucleotide kinase; 42.6 11 0.00036 35.4 2.2 16 435-450 4-19 (181)
345 2iut_A DNA translocase FTSK; n 42.2 23 0.00079 40.3 5.3 27 433-459 214-240 (574)
346 3cm0_A Adenylate kinase; ATP-b 42.1 8.2 0.00028 36.5 1.4 21 432-452 3-23 (186)
347 2r62_A Cell division protease 41.8 7.6 0.00026 39.4 1.1 19 433-451 44-62 (268)
348 3foj_A Uncharacterized protein 41.7 18 0.00061 30.5 3.3 38 641-678 55-92 (100)
349 3ice_A Transcription terminati 41.6 1.2E+02 0.0043 32.7 10.5 34 419-452 157-193 (422)
350 3eme_A Rhodanese-like domain p 41.6 17 0.00059 30.8 3.2 38 641-678 55-92 (103)
351 1znw_A Guanylate kinase, GMP k 41.4 12 0.0004 36.4 2.4 22 429-450 16-37 (207)
352 2r2a_A Uncharacterized protein 41.1 13 0.00043 36.3 2.6 21 434-454 6-26 (199)
353 4gp7_A Metallophosphoesterase; 41.1 8.2 0.00028 36.4 1.2 20 432-451 8-27 (171)
354 4eun_A Thermoresistant glucoki 41.0 12 0.00041 36.1 2.4 19 432-450 28-46 (200)
355 3fb4_A Adenylate kinase; psych 40.7 11 0.00039 36.6 2.2 18 435-452 2-19 (216)
356 3nwj_A ATSK2; P loop, shikimat 40.4 15 0.00051 37.2 3.1 22 432-453 47-68 (250)
357 2c95_A Adenylate kinase 1; tra 40.3 13 0.00045 35.3 2.5 23 431-453 7-29 (196)
358 1tue_A Replication protein E1; 40.1 25 0.00086 34.5 4.4 27 424-450 45-75 (212)
359 2c9o_A RUVB-like 1; hexameric 40.1 11 0.00039 41.7 2.3 20 433-452 63-82 (456)
360 1bg2_A Kinesin; motor protein, 40.1 16 0.00053 38.7 3.2 25 426-450 69-95 (325)
361 3lnc_A Guanylate kinase, GMP k 40.0 9.6 0.00033 37.8 1.5 20 431-450 25-44 (231)
362 1via_A Shikimate kinase; struc 40.0 13 0.00045 34.8 2.5 21 434-454 5-25 (175)
363 3iwh_A Rhodanese-like domain p 39.8 19 0.00066 30.8 3.2 37 641-677 55-91 (103)
364 3dl0_A Adenylate kinase; phosp 39.7 12 0.00041 36.5 2.2 18 435-452 2-19 (216)
365 1knq_A Gluconate kinase; ALFA/ 39.6 11 0.00038 35.3 1.8 19 433-451 8-26 (175)
366 4dzz_A Plasmid partitioning pr 39.6 30 0.001 33.0 5.1 32 519-554 55-86 (206)
367 3d8b_A Fidgetin-like protein 1 39.6 11 0.00039 40.2 2.1 19 433-451 117-135 (357)
368 1rif_A DAR protein, DNA helica 39.5 6.1 0.00021 40.6 -0.0 20 174-193 250-269 (282)
369 1t5c_A CENP-E protein, centrom 39.3 16 0.00055 39.0 3.2 25 426-450 69-95 (349)
370 1xp8_A RECA protein, recombina 39.0 22 0.00075 38.2 4.2 39 432-477 73-111 (366)
371 1g8p_A Magnesium-chelatase 38 38.7 12 0.0004 39.5 2.1 19 433-451 45-63 (350)
372 3uie_A Adenylyl-sulfate kinase 38.7 12 0.0004 36.2 1.9 33 419-452 12-44 (200)
373 1s96_A Guanylate kinase, GMP k 38.6 14 0.00047 36.6 2.4 20 430-449 13-32 (219)
374 3dc4_A Kinesin-like protein NO 38.6 15 0.00053 39.0 2.9 25 426-450 86-112 (344)
375 1zuh_A Shikimate kinase; alpha 38.6 13 0.00045 34.5 2.1 21 434-454 8-28 (168)
376 3gbj_A KIF13B protein; kinesin 38.6 17 0.00057 39.0 3.2 26 425-450 83-110 (354)
377 2nr8_A Kinesin-like protein KI 38.6 17 0.00057 39.0 3.2 25 426-450 95-121 (358)
378 1nij_A Hypothetical protein YJ 38.5 21 0.00071 37.5 3.9 15 435-449 6-20 (318)
379 1gvn_B Zeta; postsegregational 38.3 11 0.00039 38.9 1.8 17 434-450 34-50 (287)
380 3b6u_A Kinesin-like protein KI 38.3 18 0.0006 39.0 3.3 25 426-450 93-119 (372)
381 1v8k_A Kinesin-like protein KI 38.3 17 0.00058 39.7 3.2 25 426-450 146-172 (410)
382 2zfi_A Kinesin-like protein KI 38.1 17 0.00057 39.2 3.1 25 426-450 81-107 (366)
383 2h58_A Kinesin-like protein KI 37.9 17 0.00057 38.5 3.1 26 425-450 71-98 (330)
384 1tev_A UMP-CMP kinase; ploop, 37.8 12 0.00042 35.4 1.8 20 433-452 3-22 (196)
385 1zd8_A GTP:AMP phosphotransfer 37.8 14 0.0005 36.3 2.4 20 432-451 6-25 (227)
386 2rhm_A Putative kinase; P-loop 37.7 13 0.00044 35.3 2.0 20 433-452 5-24 (193)
387 2iyv_A Shikimate kinase, SK; t 37.7 16 0.00055 34.5 2.6 20 434-453 3-22 (184)
388 3t61_A Gluconokinase; PSI-biol 37.6 15 0.0005 35.4 2.4 18 434-451 19-36 (202)
389 3u4q_B ATP-dependent helicase/ 37.6 21 0.00071 44.8 4.4 40 436-479 4-43 (1166)
390 1x88_A Kinesin-like protein KI 37.6 16 0.00056 39.1 2.9 25 426-450 80-106 (359)
391 2bwj_A Adenylate kinase 5; pho 37.5 15 0.00052 35.0 2.5 20 432-451 11-30 (199)
392 2y65_A Kinesin, kinesin heavy 37.4 18 0.00061 38.9 3.2 25 426-450 76-102 (365)
393 2vvg_A Kinesin-2; motor protei 37.4 18 0.00062 38.6 3.2 25 426-450 81-107 (350)
394 2v6i_A RNA helicase; membrane, 37.4 36 0.0012 37.3 5.8 53 468-525 171-224 (431)
395 3sr0_A Adenylate kinase; phosp 37.1 14 0.00048 36.2 2.2 21 434-454 1-21 (206)
396 1c9k_A COBU, adenosylcobinamid 37.1 16 0.00054 35.1 2.4 44 436-490 2-45 (180)
397 1ixz_A ATP-dependent metallopr 37.1 14 0.00048 37.1 2.2 17 434-450 50-66 (254)
398 2l82_A Designed protein OR32; 37.1 80 0.0027 26.9 6.4 50 646-695 6-55 (162)
399 4a14_A Kinesin, kinesin-like p 36.9 18 0.00063 38.5 3.2 25 426-450 75-101 (344)
400 1wv9_A Rhodanese homolog TT165 36.9 23 0.00079 29.4 3.3 36 643-678 54-89 (94)
401 1zak_A Adenylate kinase; ATP:A 36.8 20 0.00068 35.1 3.3 21 433-453 5-25 (222)
402 1goj_A Kinesin, kinesin heavy 36.8 18 0.0006 38.8 3.0 24 427-450 73-98 (355)
403 1e6c_A Shikimate kinase; phosp 36.7 16 0.00054 33.9 2.4 20 434-453 3-22 (173)
404 2yvu_A Probable adenylyl-sulfa 36.6 24 0.00081 33.4 3.7 21 432-452 12-32 (186)
405 1aky_A Adenylate kinase; ATP:A 36.5 16 0.00053 35.8 2.4 22 432-453 3-24 (220)
406 2qt1_A Nicotinamide riboside k 36.4 8.4 0.00029 37.4 0.4 20 431-450 19-38 (207)
407 2pt5_A Shikimate kinase, SK; a 36.3 15 0.00051 34.0 2.1 18 435-452 2-19 (168)
408 2jmf_B Neurogenic locus notch 36.2 8.9 0.0003 23.0 0.3 11 14-24 7-17 (26)
409 4etp_A Kinesin-like protein KA 36.2 19 0.00065 39.3 3.2 25 426-450 132-158 (403)
410 1sky_E F1-ATPase, F1-ATP synth 36.0 1.6E+02 0.0056 32.5 10.7 29 427-455 145-173 (473)
411 1f9v_A Kinesin-like protein KA 36.0 17 0.0006 38.7 2.8 25 426-450 76-102 (347)
412 2wbe_C Bipolar kinesin KRP-130 36.0 17 0.00059 39.1 2.8 24 426-449 92-117 (373)
413 3lre_A Kinesin-like protein KI 35.8 19 0.00064 38.6 3.0 25 426-450 97-123 (355)
414 2v54_A DTMP kinase, thymidylat 35.6 17 0.00056 34.9 2.4 19 432-450 3-21 (204)
415 3t0q_A AGR253WP; kinesin, alph 35.6 18 0.00062 38.6 2.9 25 426-450 77-103 (349)
416 1e4v_A Adenylate kinase; trans 35.4 16 0.00055 35.6 2.3 18 435-452 2-19 (214)
417 3cob_A Kinesin heavy chain-lik 35.2 17 0.00058 39.1 2.6 25 426-450 71-97 (369)
418 2cdn_A Adenylate kinase; phosp 35.1 17 0.00058 34.9 2.4 20 433-452 20-39 (201)
419 2bdt_A BH3686; alpha-beta prot 35.1 16 0.00055 34.7 2.2 18 434-451 3-20 (189)
420 1nks_A Adenylate kinase; therm 35.1 16 0.00056 34.4 2.3 18 435-452 3-20 (194)
421 1m7g_A Adenylylsulfate kinase; 35.1 18 0.00061 35.2 2.6 32 419-451 12-43 (211)
422 1in4_A RUVB, holliday junction 35.0 16 0.00056 38.5 2.4 19 434-452 52-70 (334)
423 2ec3_A Fibronectin; complement 34.8 9.9 0.00034 29.6 0.5 17 48-64 18-34 (68)
424 3c8u_A Fructokinase; YP_612366 34.8 16 0.00054 35.5 2.2 19 432-450 21-39 (208)
425 1qf9_A UMP/CMP kinase, protein 34.3 17 0.00059 34.2 2.3 18 435-452 8-25 (194)
426 1zu4_A FTSY; GTPase, signal re 34.2 25 0.00085 37.0 3.7 22 433-454 105-126 (320)
427 2vli_A Antibiotic resistance p 34.1 17 0.00057 34.1 2.1 21 432-452 4-24 (183)
428 1rj9_A FTSY, signal recognitio 34.1 29 0.001 36.1 4.2 18 433-450 102-119 (304)
429 2heh_A KIF2C protein; kinesin, 34.0 20 0.00069 38.8 2.9 25 426-450 126-152 (387)
430 2owm_A Nckin3-434, related to 34.0 21 0.0007 39.5 3.1 25 426-450 128-154 (443)
431 1ye8_A Protein THEP1, hypothet 33.8 18 0.0006 34.5 2.2 16 435-450 2-17 (178)
432 3be4_A Adenylate kinase; malar 33.7 19 0.00065 35.2 2.5 21 433-453 5-25 (217)
433 1f2t_A RAD50 ABC-ATPase; DNA d 33.7 15 0.0005 33.9 1.5 15 435-449 25-39 (149)
434 2jaq_A Deoxyguanosine kinase; 33.5 17 0.00059 34.7 2.2 18 435-452 2-19 (205)
435 3g5j_A Putative ATP/GTP bindin 33.5 49 0.0017 29.0 5.1 38 641-678 87-126 (134)
436 3hix_A ALR3790 protein; rhodan 33.4 28 0.00095 29.7 3.3 39 640-678 50-89 (106)
437 3u06_A Protein claret segregat 33.4 20 0.0007 39.1 2.9 26 425-450 129-156 (412)
438 2v3c_C SRP54, signal recogniti 33.3 28 0.00096 38.3 4.0 35 434-475 100-134 (432)
439 4a74_A DNA repair and recombin 33.0 14 0.00046 36.2 1.3 20 432-451 24-43 (231)
440 1cke_A CK, MSSA, protein (cyti 32.9 18 0.00062 35.3 2.2 19 434-452 6-24 (227)
441 1ak2_A Adenylate kinase isoenz 32.8 23 0.00077 35.1 2.9 22 433-454 16-37 (233)
442 1iy2_A ATP-dependent metallopr 32.7 18 0.00061 36.9 2.2 17 434-450 74-90 (278)
443 3tlx_A Adenylate kinase 2; str 32.2 19 0.00064 36.1 2.2 22 432-453 28-49 (243)
444 2pez_A Bifunctional 3'-phospho 32.2 18 0.0006 34.1 1.9 19 432-450 4-22 (179)
445 3bfn_A Kinesin-like protein KI 32.1 18 0.0006 39.2 2.1 22 429-450 93-116 (388)
446 2wwf_A Thymidilate kinase, put 32.0 21 0.00071 34.4 2.5 22 432-453 9-30 (212)
447 3kta_A Chromosome segregation 32.0 21 0.00073 33.5 2.5 16 435-450 28-43 (182)
448 4f4c_A Multidrug resistance pr 31.9 22 0.00075 45.2 3.2 40 542-581 1234-1273(1321)
449 3pxg_A Negative regulator of g 31.8 26 0.00088 39.0 3.5 21 433-453 201-221 (468)
450 3k1j_A LON protease, ATP-depen 31.7 28 0.00097 40.1 3.9 22 429-450 56-77 (604)
451 3f9v_A Minichromosome maintena 31.7 19 0.00065 41.5 2.4 16 435-450 329-344 (595)
452 3asz_A Uridine kinase; cytidin 31.6 18 0.00063 34.9 2.0 19 432-450 5-23 (211)
453 2rep_A Kinesin-like protein KI 31.5 21 0.0007 38.6 2.5 25 426-450 107-133 (376)
454 2plr_A DTMP kinase, probable t 31.3 18 0.00062 34.7 1.9 21 432-452 3-23 (213)
455 1nn5_A Similar to deoxythymidy 31.3 22 0.00075 34.3 2.5 22 432-453 8-29 (215)
456 2if2_A Dephospho-COA kinase; a 31.0 21 0.00072 34.3 2.3 16 435-450 3-18 (204)
457 1v5w_A DMC1, meiotic recombina 31.0 22 0.00076 37.7 2.6 46 432-478 121-166 (343)
458 2x8a_A Nuclear valosin-contain 30.7 20 0.00068 36.7 2.1 17 434-450 45-61 (274)
459 2i1q_A DNA repair and recombin 30.6 39 0.0013 35.2 4.5 24 433-456 98-121 (322)
460 1uf9_A TT1252 protein; P-loop, 30.4 22 0.00075 33.9 2.3 16 435-450 10-25 (203)
461 1g41_A Heat shock protein HSLU 30.4 22 0.00074 39.3 2.5 19 433-451 50-68 (444)
462 2v9p_A Replication protein E1; 30.3 20 0.00067 37.5 2.0 19 431-449 124-142 (305)
463 4e22_A Cytidylate kinase; P-lo 30.0 22 0.00076 35.7 2.4 20 432-451 26-45 (252)
464 1ukz_A Uridylate kinase; trans 30.0 22 0.00075 34.1 2.2 17 434-450 16-32 (203)
465 3qf7_A RAD50; ABC-ATPase, ATPa 29.7 25 0.00084 37.8 2.7 16 435-450 25-40 (365)
466 3auy_A DNA double-strand break 29.5 18 0.00062 38.9 1.6 16 434-449 26-41 (371)
467 1ry6_A Internal kinesin; kines 29.5 26 0.0009 37.5 2.9 19 432-450 82-102 (360)
468 3tif_A Uncharacterized ABC tra 29.5 16 0.00055 36.5 1.1 18 432-449 30-47 (235)
469 2fz4_A DNA repair protein RAD2 29.4 1E+02 0.0035 30.3 7.3 58 629-700 121-179 (237)
470 2fsx_A RV0390, COG0607: rhodan 29.3 45 0.0015 30.3 4.2 38 640-677 78-116 (148)
471 2xb4_A Adenylate kinase; ATP-b 29.0 23 0.00078 34.9 2.2 19 435-453 2-20 (223)
472 3umf_A Adenylate kinase; rossm 29.0 20 0.00069 35.4 1.8 23 432-454 28-50 (217)
473 2jtq_A Phage shock protein E; 29.0 77 0.0026 25.4 5.2 38 640-678 39-77 (85)
474 2pbr_A DTMP kinase, thymidylat 29.0 23 0.00079 33.4 2.2 18 435-452 2-19 (195)
475 1xjc_A MOBB protein homolog; s 28.9 44 0.0015 31.5 4.0 16 435-450 6-21 (169)
476 1jjv_A Dephospho-COA kinase; P 28.8 23 0.0008 34.0 2.2 16 435-450 4-19 (206)
477 2cg7_A Fibronectin; signaling 28.5 21 0.00072 29.8 1.4 19 47-65 46-64 (90)
478 2ipc_A Preprotein translocase 28.5 79 0.0027 38.0 6.8 76 637-718 115-210 (997)
479 3flh_A Uncharacterized protein 28.3 28 0.00095 30.7 2.4 38 641-678 70-109 (124)
480 3b9q_A Chloroplast SRP recepto 27.9 37 0.0013 35.3 3.7 19 432-450 99-117 (302)
481 2i3b_A HCR-ntpase, human cance 27.9 28 0.00096 33.4 2.5 41 541-584 103-145 (189)
482 2k0z_A Uncharacterized protein 27.8 53 0.0018 28.1 4.2 39 640-678 54-92 (110)
483 1qxn_A SUD, sulfide dehydrogen 27.8 38 0.0013 30.5 3.3 39 640-678 80-119 (137)
484 2cbz_A Multidrug resistance-as 27.6 18 0.00062 36.2 1.1 18 432-449 30-47 (237)
485 3nhv_A BH2092 protein; alpha-b 27.4 36 0.0012 30.9 3.1 38 641-678 71-110 (144)
486 1gmx_A GLPE protein; transfera 27.2 34 0.0012 29.1 2.8 39 640-678 56-95 (108)
487 2xxa_A Signal recognition part 27.2 34 0.0012 37.6 3.4 44 434-483 101-146 (433)
488 3a4m_A L-seryl-tRNA(SEC) kinas 27.2 26 0.00088 35.5 2.2 19 434-452 5-23 (260)
489 2z0h_A DTMP kinase, thymidylat 26.9 27 0.00091 33.1 2.2 17 436-452 3-19 (197)
490 1z5z_A Helicase of the SNF2/RA 26.9 46 0.0016 33.9 4.1 56 226-283 92-159 (271)
491 3tqf_A HPR(Ser) kinase; transf 26.8 25 0.00087 33.5 1.9 20 432-451 15-34 (181)
492 3dmq_A RNA polymerase-associat 26.7 75 0.0026 38.8 6.6 48 226-273 485-542 (968)
493 1sgw_A Putative ABC transporte 26.7 21 0.00071 35.2 1.4 19 431-449 33-51 (214)
494 2bbw_A Adenylate kinase 4, AK4 26.6 28 0.00095 34.7 2.3 18 433-450 27-44 (246)
495 2p5t_B PEZT; postsegregational 26.5 23 0.00079 35.6 1.7 18 434-451 33-50 (253)
496 3l49_A ABC sugar (ribose) tran 26.2 3E+02 0.01 27.1 10.4 185 468-667 5-215 (291)
497 3pxi_A Negative regulator of g 26.1 39 0.0013 40.1 3.9 21 433-453 201-221 (758)
498 3d1p_A Putative thiosulfate su 25.9 45 0.0015 29.8 3.5 38 641-678 90-128 (139)
499 3cmw_A Protein RECA, recombina 25.9 53 0.0018 42.5 5.1 40 432-478 33-72 (1706)
500 4akg_A Glutathione S-transfera 25.8 23 0.00078 48.1 1.9 21 430-450 1264-1284(2695)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-53 Score=485.24 Aligned_cols=368 Identities=29% Similarity=0.528 Sum_probs=324.2
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC-CCCCCcEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGTGI 471 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~-~~~~~~~v 471 (838)
...|++++ +++.+++.+.++||..|||+|.++|+.+++|+|+++++|||||||++|++|++..+..... ....+.++
T Consensus 55 ~~~f~~~~--l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 55 IQHFTSAD--LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred cCChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 35688887 9999999999999999999999999999999999999999999999999999998876432 12346789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
||++||++|+.|+++.++++....+..+..++||.....+...+..+++|+|+||++|.+++.+.. ..+++++++|+||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlDE 211 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDE 211 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEET
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEEcc
Confidence 999999999999999999998888888899999999888888888899999999999999988764 5678999999999
Q ss_pred CCcccccCcHHHHHHHHHHC--CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 552 ADRILDIGFEEDMKQIVNLL--PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l--~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
||++.+++|...+..++..+ ++..|+++||||++..+..+....+. ++..+.+.... .....+.+.+..+....|
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIGIVG--GACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCS-SCEEEEESSTT--CCCTTEEEEEEECCGGGH
T ss_pred HhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhcc-CCEEEEecccc--ccccccceEEEEeCcHHH
Confidence 99999999999999999875 57899999999999998888887775 66666554332 334567777888888889
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
...+..++.....+ +||||++++.++.+++.|++.++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|
T Consensus 289 ~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 289 RSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 99999999887654 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC-chH----HHHHHHHcCCCCccc
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE-ELG----FLRYLKQAKIPLNEF 768 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~-e~~----~~~~l~~~~~~~~~~ 768 (838)
++++||+||+|.+..+|+||+||+||. |+.|.+++|+.++ +.. ..+.+++.+.+++++
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~-g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~ 430 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRV-GNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDF 430 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCT-TCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGG
T ss_pred cCCEEEEECCCCCHHHHHHHhcccccC-CCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999997 8999999999954 443 344555566665544
No 2
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-51 Score=485.81 Aligned_cols=432 Identities=31% Similarity=0.498 Sum_probs=334.6
Q ss_pred cchhhhc--ccCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 394 TQFEALK--GKVCENTLKAIADMGFTKMTEIQARTIPPLL--EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 394 ~~f~~l~--~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~--~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
..|+++. ..+++++++++.++||..|||+|.++++.++ .++|+++++|||+|||++|++|+++.+...+.....+.
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 4466554 2489999999999999999999999999999 77899999999999999999999999877544444567
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhh----cCCeEEEEeCCcchHHHHHHHh-cCCcEEEcChHHHHHHHhcCcccccCCc
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKY----HHHTYGLIMGGASRQAEAQKLA-KGINIIVATPGRLLDHLQNTPEFLYKNL 544 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~----~~~~v~~l~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l 544 (838)
++|||+||++|+.|+++.++++... ....+..+.|+.....+...+. .+++|+|+||++|.+++.......++.+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 8999999999999999999998643 3466778888888777766664 4789999999999998876544567889
Q ss_pred eEEEEeCCCcccccCcHHHHHHHHHHCCc-------cceEEEEeeecccchHHHHHHHccCCCeEEEecC--cccccccc
Q psy12983 545 QCLIIDEADRILDIGFEEDMKQIVNLLPK-------RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD--TKEEATVA 615 (838)
Q Consensus 545 ~lvViDEah~l~~~gf~~~~~~il~~l~~-------~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~--~~~~~~~~ 615 (838)
++|||||||++.+++|...+..++..++. .+|+++||||+++.+..+....+. .+..+.+.. ........
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSSSCSSCT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcC-CCceEEEeecCcccccccc
Confidence 99999999999999999999988877643 679999999999988888777765 444433322 22223334
Q ss_pred ceeeEEEECCc-hhHH----HHHHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcC---CCCeEEecCCCChhHHHHHHH
Q psy12983 616 GLEQGYVVCPS-EKRF----LLLFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYI---DLPVMCIHGKQKQMKRTTTFF 686 (838)
Q Consensus 616 ~l~~~~~~~~~-~~k~----~~l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~---~~~v~~lhg~m~~~~R~~i~~ 686 (838)
.+.+.+..... ..+. ..+...+.. ....++||||++++.++.+++.|++. ++.+..+||+|++.+|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 45555555443 2222 223333333 56789999999999999999999886 889999999999999999999
Q ss_pred HHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCC
Q psy12983 687 QFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPL 765 (838)
Q Consensus 687 ~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~ 765 (838)
+|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||. |+.|.+++|+.+.|..+++.+++. +.++
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 414 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS-GKEGSSVLFICKDELPFVRELEDAKNIVI 414 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT-TCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccC-CCCceEEEEEcccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999997 899999999999999999999864 4555
Q ss_pred ccccccchhhHHHHHHHHHHHhhcHHHHHhHHHHHHHHHHHHhccccccccCCCCCC-HHHHHhhcCcc
Q psy12983 766 NEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMD-LGKDSKHTCVL 833 (838)
Q Consensus 766 ~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ld-l~~~a~~~~l~ 833 (838)
...+.. ........++.+.+........ ++..+++..|.... ..+.+...| +.++|+.||++
T Consensus 415 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 477 (579)
T 3sqw_A 415 AKQEKY-EPSEEIKSEVLEAVTEEPEDIS---DIVISLISSYRSCI--KEYRFSERRILPEIASTYGVL 477 (579)
T ss_dssp CEEEEE-CCCHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHH--HHHTCCHHHHHHHHHHHHHHH
T ss_pred ccccCC-CccHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHH--HHhCCCcccHHHHHHHHHHHH
Confidence 433221 1122344444444434333222 33334444444332 224444554 58899998864
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=458.52 Aligned_cols=359 Identities=31% Similarity=0.498 Sum_probs=313.1
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC----------
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF---------- 463 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~---------- 463 (838)
.+|++++ +++.+.+.+.++||..|+|+|.++++.+++++|+++++|||+|||++|++|+++.+.....
T Consensus 15 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 15 ESFSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp SSGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred CCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 5699987 9999999999999999999999999999999999999999999999999999988765321
Q ss_pred ----CCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCccc
Q psy12983 464 ----MPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEF 539 (838)
Q Consensus 464 ----~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~ 539 (838)
....+.+++|++||++|+.|+++.++++....+..+..++|+.....+...+..+++|+|+||++|.+++.... +
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~ 171 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-I 171 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-B
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC-c
Confidence 01224679999999999999999999998888889999999998888888888889999999999999888764 5
Q ss_pred ccCCceEEEEeCCCcccccCcHHHHHHHHHH--CCc--cceEEEEeeecccchHHHHHHHccCCCeEEEecCcccccccc
Q psy12983 540 LYKNLQCLIIDEADRILDIGFEEDMKQIVNL--LPK--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVA 615 (838)
Q Consensus 540 ~~~~l~lvViDEah~l~~~gf~~~~~~il~~--l~~--~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~ 615 (838)
.++++++||+||||++.+++|...+..++.. ++. ..|+++||||++.....+....+. .+..+.+... .....
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 248 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD-EYIFLAVGRV--GSTSE 248 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS-SCEEEEEC------CCS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEeCCC--CCCcc
Confidence 5788999999999999999999999999874 332 578999999999888887777764 5555544332 23445
Q ss_pred ceeeEEEECCchhHHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 616 GLEQGYVVCPSEKRFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 616 ~l~~~~~~~~~~~k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
.+.+.+..+....+...+..+++.. .++++||||+++++++.+++.|++.++.+..+||+|++.+|..++++|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 6677788888888888999988876 577999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHH
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLK 759 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~ 759 (838)
|||||+++++|+|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+.+...++.+.
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV-GNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC-CCCceEEEEEccccHHHHHHHH
Confidence 999999999999999999999999999999999999999997 8899999999998876665554
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5e-51 Score=481.16 Aligned_cols=432 Identities=31% Similarity=0.484 Sum_probs=333.1
Q ss_pred cchhhhc--ccCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 394 TQFEALK--GKVCENTLKAIADMGFTKMTEIQARTIPPLL--EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 394 ~~f~~l~--~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~--~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
..|+++. ..+++++++++.++||..|+|+|.++++.++ .++|++++||||+|||++|++|+++.+...+.....+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3455553 2389999999999999999999999999999 67899999999999999999999999887544444567
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhh----cCCeEEEEeCCcchHHHHHHH-hcCCcEEEcChHHHHHHHhcCcccccCCc
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKY----HHHTYGLIMGGASRQAEAQKL-AKGINIIVATPGRLLDHLQNTPEFLYKNL 544 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~----~~~~v~~l~gg~~~~~~~~~l-~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l 544 (838)
++|||+||++|+.|+++.++.+... ....+..+.|+.....+...+ ..+++|+|+||+++.+++.......++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999997653 245677888888877766666 44789999999999998876544557889
Q ss_pred eEEEEeCCCcccccCcHHHHHHHHHHCC-------ccceEEEEeeecccchHHHHHHHccCCCeEEEec--Ccccccccc
Q psy12983 545 QCLIIDEADRILDIGFEEDMKQIVNLLP-------KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD--DTKEEATVA 615 (838)
Q Consensus 545 ~lvViDEah~l~~~gf~~~~~~il~~l~-------~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~--~~~~~~~~~ 615 (838)
++|||||||++.+++|...+..++..++ +..|+++||||+++.+..+....+. .+..+.+. .........
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 306 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKNEPEAHE 306 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSSSCSSCT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCCCccccc
Confidence 9999999999999999999998877753 3678999999999988887777665 34333332 222233344
Q ss_pred ceeeEEEECCch-hHHH----HHHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcC---CCCeEEecCCCChhHHHHHHH
Q psy12983 616 GLEQGYVVCPSE-KRFL----LLFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYI---DLPVMCIHGKQKQMKRTTTFF 686 (838)
Q Consensus 616 ~l~~~~~~~~~~-~k~~----~l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~---~~~v~~lhg~m~~~~R~~i~~ 686 (838)
.+.+.+...... .+.. .+...+.. ..+.++||||++++.++.+++.|++. ++.+..+||+|++.+|..+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~ 386 (563)
T 3i5x_A 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 386 (563)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred cCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Confidence 455555554432 2222 22233332 56789999999999999999999886 889999999999999999999
Q ss_pred HHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCC
Q psy12983 687 QFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPL 765 (838)
Q Consensus 687 ~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~ 765 (838)
.|++|+.+|||||+++++|||+|++++||+|+.|.+..+|+||+|||||. |+.|.+++|+.+.|..+++.+++. +.++
T Consensus 387 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 387 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS-GKEGSSVLFICKDELPFVRELEDAKNIVI 465 (563)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT-TCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred HHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC-CCCceEEEEEchhHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999997 899999999999999999999864 5665
Q ss_pred ccccccchhhHHHHHHHHHHHhhcHHHHHhHHHHHHHHHHHHhccccccccCCCCCC-HHHHHhhcCcc
Q psy12983 766 NEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMD-LGKDSKHTCVL 833 (838)
Q Consensus 766 ~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ld-l~~~a~~~~l~ 833 (838)
+..+.... ......++.+.+.+..........++.+|.+++. ..+.....+ +.++|++||++
T Consensus 466 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l 528 (563)
T 3i5x_A 466 AKQEKYEP-SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCI-----KEYRFSERRILPEIASTYGVL 528 (563)
T ss_dssp CEEEEECC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTH-----HHHTCCHHHHHHHHHTHHHHH
T ss_pred ccccccCc-cHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH-----HHhCCChHHHHHHHHHHHHHH
Confidence 54432211 1223333444443433333334444444444433 224444443 67889998854
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-50 Score=457.78 Aligned_cols=367 Identities=29% Similarity=0.517 Sum_probs=322.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.. ...+.++||
T Consensus 37 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~----~~~~~~~li 110 (410)
T 2j0s_A 37 PTFDTMG--LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI----QVRETQALI 110 (410)
T ss_dssp CSGGGGC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT----TSCSCCEEE
T ss_pred CCHhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh----ccCCceEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999987532 134678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++||++|+.|+++.++.+....+..+..++|+.....+...+..+++|+|+||+++.+++.... +.+.++++||+||||
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViDEah 189 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLDEAD 189 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHH
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEccHH
Confidence 9999999999999999998888889999999998888888888889999999999999888753 556889999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch-hHHHH
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-KRFLL 632 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~ 632 (838)
++.+++|...+..++..+++..|++++|||++.....+....+. .+..+.+.. .......+.+.+..+... .+...
T Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 190 EMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMT-DPIRILVKR--DELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCS-SCEEECCCG--GGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcC-CCEEEEecC--ccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999876666655553 454443322 233445566666665544 48888
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++.....+++||||++++.++.+++.|++.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCcccccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFEFS 771 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~~~ 771 (838)
+||+||.|.+...|+||+||+||. |+.|.+++|+.+.+...++.+++ .+..++++...
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRY-GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGG-GCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEECCCCCHHHHHHhcccccCC-CCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 999999999999999999999997 89999999999999999998876 45566655443
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-49 Score=447.92 Aligned_cols=366 Identities=29% Similarity=0.474 Sum_probs=322.6
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
..+|++++ +++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...+.+++
T Consensus 20 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~l 93 (400)
T 1s2m_A 20 GNTFEDFY--LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP----KLNKIQAL 93 (400)
T ss_dssp -CCGGGGC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT----TSCSCCEE
T ss_pred cCChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh----ccCCccEE
Confidence 35699998 9999999999999999999999999999999999999999999999999999987633 12466899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
|++|+++|+.|+++.++++....+..+....|+.........+..+++|+|+||+++.+++.... ..+.++++||+|||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeCc
Confidence 99999999999999999998888889999999988877766677789999999999998887653 45688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++.+.+|...+..++..+++..|+++||||++..........+. .+..+.... ......+.+.+.......+...
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH-KPYEINLME---ELTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCS---SCBCTTEEEEEEECCGGGHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC-CCeEEEecc---ccccCCceeEEEEechhhHHHH
Confidence 999988899999999998988999999999999888777776664 444433322 2334556777777888888888
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++.....+++||||++++.++.+++.|++.++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 249 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 249 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCccccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFEF 770 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~~ 770 (838)
+||+++.|.+..+|+||+||+||. |+.|.+++++.+.|...++.+++ .+.++++++.
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRF-GHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCT-TCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEEEeCCCCCHHHHHHhcchhcCC-CCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 999999999999999999999997 89999999999999988888876 5677666654
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.3e-49 Score=441.09 Aligned_cols=369 Identities=29% Similarity=0.482 Sum_probs=318.9
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
+..|++++ +++.+.+.|.++||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+.. ...+.+++
T Consensus 7 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~----~~~~~~~l 80 (391)
T 1xti_A 7 SSGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP----VTGQVSVL 80 (391)
T ss_dssp --CGGGGC--CCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC----CTTCCCEE
T ss_pred CCChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc----cCCCeeEE
Confidence 46799997 9999999999999999999999999999999999999999999999999999987533 12456899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 473 IISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
|++||++|+.|+.+.++++.... +..+..+.|+.........+.. .++|+|+||+++.+++.... ..+.++++||+|
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViD 159 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILD 159 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEe
Confidence 99999999999999999988765 7888889998887766666654 47999999999999887654 456899999999
Q ss_pred CCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 551 EADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 551 Eah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
|||++.++ +|...+..++...++..|++++|||+++....+....+. .+..+..... .......+.+.+.......+
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 237 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ-DPMEIFVDDE-TKLTLHGLQQYYVKLKDNEK 237 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS-SCEEEECCCC-CCCCCTTCEEEEEECCGGGH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC-CCeEEEecCc-cccCcccceEEEEEcCchhH
Confidence 99999885 688888999998888999999999999988888777775 5555544332 22344566777788888889
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
...+..+++....+++||||+++++++.+++.|++.++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 238 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC-chHHHHHHHH-cCCCCcccccc
Q psy12983 710 AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE-ELGFLRYLKQ-AKIPLNEFEFS 771 (838)
Q Consensus 710 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~-e~~~~~~l~~-~~~~~~~~~~~ 771 (838)
++++||+++.|.+..+|+||+||+||. |+.|.+++++.+. +..+++.+++ .+.++++++..
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSS-CCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCC-CCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999997 8999999999875 5566777765 46666665543
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-49 Score=448.92 Aligned_cols=367 Identities=30% Similarity=0.502 Sum_probs=306.5
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.. ...+.+++|
T Consensus 40 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~li 113 (414)
T 3eiq_A 40 DSFDDMN--LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL----DLKATQALV 113 (414)
T ss_dssp CCGGGGC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT----TSCSCCEEE
T ss_pred cCHhhCC--CCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh----cCCceeEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999987643 124678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh-cCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA-KGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
++||++|+.|+.+.++++....+..+....|+.........+. .+++|+|+||+++.+++.... +.+.++++||+|||
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViDEa 192 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDEA 192 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEECSH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEECH
Confidence 9999999999999999998888889998899888877776665 678999999999999887753 45688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-hhHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFL 631 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~k~~ 631 (838)
|++.+++|...+..++..++++.|+++||||++.....+....+. .+..+.... .......+.+.+..... ..+..
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR-DPIRILVKK--EELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCS-SCEEECCCC--CCCCTTSCCEEEEECSSSTTHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcC-CCEEEEecC--CccCCCCceEEEEEeChHHhHHH
Confidence 999999999999999999999999999999999888777776664 454443332 22334455666666554 44888
Q ss_pred HHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc
Q psy12983 632 LLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV 711 (838)
Q Consensus 632 ~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v 711 (838)
.+..+++....+++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 349 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGC
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCC
Confidence 88999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCcccccc
Q psy12983 712 DWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFEFS 771 (838)
Q Consensus 712 ~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~~~~ 771 (838)
++||+++.|.+..+|+||+||+||. |+.|.+++++.+.+...++.+++. +..++++...
T Consensus 350 ~~Vi~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 350 SLVINYDLPTNRENYIHRIGRGGRF-GRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp SCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred CEEEEeCCCCCHHHhhhhcCcccCC-CCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 9999999999999999999999996 899999999999999999888763 5555555433
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-48 Score=432.12 Aligned_cols=358 Identities=34% Similarity=0.583 Sum_probs=313.9
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
.+|++++ +++.+.+.|.++||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+.. ..+.+++
T Consensus 6 ~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-----~~~~~~l 78 (367)
T 1hv8_A 6 MNFNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-----NNGIEAI 78 (367)
T ss_dssp CCGGGSS--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-----SSSCCEE
T ss_pred CchhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-----cCCCcEE
Confidence 5688887 9999999999999999999999999999988 799999999999999999999887533 3577899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
|++|+++|+.|+++.++++....+..+....|+.........+. +++|+|+||+++.+.+.... ..+.++++||+|||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT-LNLKNVKYFILDEA 156 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEETH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC-cccccCCEEEEeCc
Confidence 99999999999999999998877888888899888776665554 67999999999999887653 45688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHH
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLL 632 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 632 (838)
|++.+++|...+..++..+++..+++++|||++..........+. .+..+.... ...+.+.+.......+...
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 229 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMG-DYSFIKAKI------NANIEQSYVEVNENERFEA 229 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC-SEEEEECCS------SSSSEEEEEECCGGGHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC-CCeEEEecC------CCCceEEEEEeChHHHHHH
Confidence 999999999999999999989999999999999887777766664 343333221 2345566777788888888
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..++. ....++||||+++++++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 230 l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 230 LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888877 4567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCcccc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFE 769 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~ 769 (838)
+||+++.|.+..+|.||+||+||. |+.|.+++++++.|...++.+++ .+..+++++
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRA-GKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCS-SSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEecCCCCHHHhhhcccccccC-CCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999997 89999999999999999988876 366665543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.3e-48 Score=435.19 Aligned_cols=377 Identities=27% Similarity=0.451 Sum_probs=311.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
.+|++++ +++.+.+.+.++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ...+.++
T Consensus 5 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~ 78 (395)
T 3pey_A 5 KSFDELG--LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----EDASPQA 78 (395)
T ss_dssp CSSTTSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----TCCSCCE
T ss_pred cCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc----CCCCccE
Confidence 5688887 9999999999999999999999999999998 999999999999999999999987633 1356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
+|++||++|+.|+++.++++....+..+....++...... ..+++|+|+||+++.+.+.... ..+.++++||+||
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDE 153 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDE 153 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEEET
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEEEC
Confidence 9999999999999999999988778888877776543221 2368999999999999887653 5578999999999
Q ss_pred CCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECC-chhH
Q psy12983 552 ADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCP-SEKR 629 (838)
Q Consensus 552 ah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~k 629 (838)
||++.+ .++...+..+...++++.|++++|||+++....+....+. .+..+.... .......+.+.+..+. ...+
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP-NANTLELQT--NEVNVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC-SCEEECCCG--GGCSCTTEEEEEEECSSHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC-CCeEEEccc--cccccccccEEEEEcCchHHH
Confidence 999887 6788999999999999999999999999888888777764 444443322 2233345555566554 4566
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCC
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP 709 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip 709 (838)
...+..++.....+++||||+++++++.+++.|++.+..+..+||+|+..+|..++++|++|+.+|||||+++++|+|+|
T Consensus 231 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 231 FDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 77777777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC------CHHHHHHHhcccCcCCCCccEEEEEecc-CchHHHHHHHHcCCCCccccccchhhHHHHHHH
Q psy12983 710 AVDWIVQYDPPD------DPKEYIHRVGRTARGEGSSGHALLILRP-EELGFLRYLKQAKIPLNEFEFSWSKISDIQLQL 782 (838)
Q Consensus 710 ~v~~VI~~d~p~------s~~~y~Qr~GRagR~~g~~g~~i~l~~~-~e~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 782 (838)
++++||+||.|. +..+|+||+||+||. |+.|.+++++.+ ++...++.+++.--..+...+.......+++.+
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRF-GRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIV 389 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT-TCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHHHHH
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccC-CCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHHHHH
Confidence 999999999998 999999999999997 899999999987 455666676654222232233333444444444
Q ss_pred HHH
Q psy12983 783 EKL 785 (838)
Q Consensus 783 ~~~ 785 (838)
++.
T Consensus 390 ~~~ 392 (395)
T 3pey_A 390 KKV 392 (395)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.3e-48 Score=438.14 Aligned_cols=364 Identities=25% Similarity=0.441 Sum_probs=308.5
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
+...|++++ +++.+++.+.++||..|+++|.++++.++++ +++++++|||+|||++|++|+++.+.. ...+.
T Consensus 23 ~~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~----~~~~~ 96 (412)
T 3fht_A 23 SVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYP 96 (412)
T ss_dssp CSSCTGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----TSCSC
T ss_pred ccCCHhhCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh----cCCCC
Confidence 446799998 9999999999999999999999999999987 999999999999999999999987643 13456
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
+++|++||++|+.|+++.++++.... +..+....++...... ...+++|+|+||+++.+++.....+.++++++||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEE
Confidence 89999999999999999999987764 5677777766543321 1345799999999999998776666678999999
Q ss_pred EeCCCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-
Q psy12983 549 IDEADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS- 626 (838)
Q Consensus 549 iDEah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~- 626 (838)
+||||++.+ .++...+..+...++++.|++++|||+++....+....+. .+..+.... .......+.+.+..+..
T Consensus 174 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 174 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLKR--EEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS-SCEEECCCG--GGSSCTTEEEEEEECSSH
T ss_pred EeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcC-CCeEEeecc--ccccccCceEEEEEcCCh
Confidence 999999887 6788899999999999999999999999988888887774 555554432 23344556666666654
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 627 EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 627 ~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
..+...+..++.....+++||||+++++++.+++.|++.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 251 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 56778888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCC------CCHHHHHHHhcccCcCCCCccEEEEEeccCc-hHHHHHHHH-cCCCCccc
Q psy12983 707 DIPAVDWIVQYDPP------DDPKEYIHRVGRTARGEGSSGHALLILRPEE-LGFLRYLKQ-AKIPLNEF 768 (838)
Q Consensus 707 Dip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e-~~~~~~l~~-~~~~~~~~ 768 (838)
|+|++++||+||.| .+..+|+||+||+||. |+.|.+++++.+.+ ...++.+++ .+..++++
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF-GKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCT-TCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccCcccCC-CCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 99999999999999 5789999999999997 89999999998754 677777765 34444443
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.7e-49 Score=441.13 Aligned_cols=362 Identities=31% Similarity=0.498 Sum_probs=178.1
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.. ...+.+++|
T Consensus 21 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~----~~~~~~~li 94 (394)
T 1fuu_A 21 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT----SVKAPQALM 94 (394)
T ss_dssp CSSGGGC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT----TCCSCCEEE
T ss_pred CChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc----cCCCCCEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999987643 134678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++|+++|+.|+.+.++++....+..+..++|+.........+. +++|+|+||+++.+.+.... +.+.++++||+||+|
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEAD 172 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEEEChH
Confidence 9999999999999999998888889999999888766655544 57999999999998887653 456889999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch-hHHHH
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-KRFLL 632 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~k~~~ 632 (838)
++.+++|...+..++..+++..|+++||||+++....+....+. .+..+..... ......+.+.+..+... .+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR-NPVRILVKKD--ELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC-SCEEEEECC--------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC-CCeEEEecCc--cccCCCceEEEEEcCchhhHHHH
Confidence 99999999999999999999999999999999887777777664 4555444332 12223344444444433 36666
Q ss_pred HHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 633 LFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 633 l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
+..+++....+++||||+++++++.+++.|++.++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 250 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 77777777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCcc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNE 767 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~ 767 (838)
+||+++.|.+..+|+||+||+||. |+.|.+++++.++|...++.+++ .+.++++
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRF-GRKGVAINFVTNEDVGAMRELEKFYSTQIEE 384 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCC-CCCceEEEEEchhHHHHHHHHHHHhCCcccc
Confidence 999999999999999999999997 89999999999999888877765 2444433
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.1e-49 Score=453.04 Aligned_cols=356 Identities=25% Similarity=0.446 Sum_probs=171.8
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
+...|++++ +++.+++.+.++||..|+++|.++++.++++ ++++++||||||||++|++|++..+.. ...+.
T Consensus 90 ~~~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~----~~~~~ 163 (479)
T 3fmp_B 90 SVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYP 163 (479)
T ss_dssp CCCCSGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----TSCSC
T ss_pred CcCCHHHcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----cCCCC
Confidence 456799998 9999999999999999999999999999987 999999999999999999999987633 12345
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
++||++||++|+.|+++.++++.... +..+....++...... ...+++|+|+||+++.+++.+...+.++++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999999999987754 4566666665543211 1235799999999999999876667778999999
Q ss_pred EeCCCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCc-
Q psy12983 549 IDEADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS- 626 (838)
Q Consensus 549 iDEah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~- 626 (838)
|||+|++.+ .+|...+..+...++++.|++++|||++.....+....+. .+..+.+... ......+.+.+..+..
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLKRE--EETLDTIKQYYVLCSSR 317 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSS-SEEEEEEC---------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcC-CCeEEecccc--ccCcCCceEEEEEeCCH
Confidence 999999987 5788888899999999999999999999988888887774 5655555432 2334455555655544
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCC
Q psy12983 627 EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGL 706 (838)
Q Consensus 627 ~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~Gi 706 (838)
..+...+..++.....+++||||++++.++.+++.|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 318 ~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 45677777777777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCC------CCHHHHHHHhcccCcCCCCccEEEEEeccCc-hHHHHHHHH
Q psy12983 707 DIPAVDWIVQYDPP------DDPKEYIHRVGRTARGEGSSGHALLILRPEE-LGFLRYLKQ 760 (838)
Q Consensus 707 Dip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e-~~~~~~l~~ 760 (838)
|+|++++||+||+| .+..+|+||+|||||. |+.|.+++|+.+.+ ..+++.+++
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~-g~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF-GKRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccC-CCCceEEEEEcCcchHHHHHHHHH
Confidence 99999999999999 4678999999999997 89999999998755 666666654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-46 Score=410.16 Aligned_cols=332 Identities=34% Similarity=0.545 Sum_probs=285.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
+++++.+.+.++||..|+|+|.++++.+++++++++.+|||+|||++|++|+++. +.+++|++|+++|+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHH
Confidence 4678999999999999999999999999999999999999999999999998763 567999999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHH
Q psy12983 483 QTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEE 562 (838)
Q Consensus 483 Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~ 562 (838)
|+++.++++....+..+..++|+.........+. .++|+|+||+++.+.+.... ..+.++++||+||||++.+++|..
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS-CCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC-cchhhCcEEEEEChHHhhccccHH
Confidence 9999999998888888999999888776655554 48999999999998877653 456889999999999999999999
Q ss_pred HHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCC
Q psy12983 563 DMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRK 642 (838)
Q Consensus 563 ~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~ 642 (838)
.+..++...+...+++++|||+++.........+. .+..+... .....+.+.+.......+. ....+....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 220 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT-NYEEIEAC-----IGLANVEHKFVHVKDDWRS--KVQALRENKD 220 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC-SCEEEECS-----GGGGGEEEEEEECSSSSHH--HHHHHHTCCC
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC-Cceeeecc-----cccCCceEEEEEeChHHHH--HHHHHHhCCC
Confidence 99999999999999999999999887777776664 34333221 2233455555555543332 3356667788
Q ss_pred CeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCC
Q psy12983 643 KKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDD 722 (838)
Q Consensus 643 ~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s 722 (838)
+++||||+++++++.+++.|. .+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++.|.+
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 899999999999999998887 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 723 PKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 723 ~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
..+|+||+||+||. |+.|.+++++. .|...++.+++
T Consensus 297 ~~~~~Q~~GR~gR~-g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 297 LRTYIHRIGRTGRM-GRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp HHHHHHHHTTBCGG-GCCEEEEEEES-SCHHHHHHHC-
T ss_pred HHHhhHhcCccccC-CCCceEEEEEe-CcHHHHHHHHH
Confidence 99999999999997 89999999999 77777777654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.6e-46 Score=436.44 Aligned_cols=346 Identities=16% Similarity=0.213 Sum_probs=278.1
Q ss_pred cchhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
..|.....++++.+.+.|.+ |||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++. ....+|
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~----------~~g~~l 88 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC----------SDGFTL 88 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT----------SSSEEE
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH----------cCCcEE
Confidence 34444333488999999998 8999999999999999999999999999999999999999974 245899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHH------hcCCcEEEcChHHHH------HHHhcCcccc
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKL------AKGINIIVATPGRLL------DHLQNTPEFL 540 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l------~~~~~IvV~Tp~~l~------~~l~~~~~~~ 540 (838)
||+|+++|+.|+.+.++.+ ++.+..+.++....+..... ...++|+|+||++|. +.+.. ...
T Consensus 89 VisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~ 162 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYE 162 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHH
T ss_pred EEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhh
Confidence 9999999999999999886 67778888877665443322 346899999999874 22222 234
Q ss_pred cCCceEEEEeCCCcccccC--cHHHHHH--HHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccc
Q psy12983 541 YKNLQCLIIDEADRILDIG--FEEDMKQ--IVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAG 616 (838)
Q Consensus 541 ~~~l~lvViDEah~l~~~g--f~~~~~~--il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~ 616 (838)
+.++++|||||||++.+|| |++.+.. .+....++.++++||||+++.+.......+............ ...+
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~----~r~n 238 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF----NRPN 238 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC----CCTT
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC----CCcc
Confidence 5789999999999999998 8777765 344444578999999999988766665555433222222111 1122
Q ss_pred eeeEEEECCc--hhHHHHHHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCc
Q psy12983 617 LEQGYVVCPS--EKRFLLLFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAET 693 (838)
Q Consensus 617 l~~~~~~~~~--~~k~~~l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~ 693 (838)
+...+..... ..+...+..++.. ..++++||||++++.++.+++.|++.++.+..+||+|++.+|..++++|++|+.
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 3222222222 3455667777764 367899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 694 GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 694 ~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+|||||+++++|||+|++++||+|++|.+.+.|+||+|||||. |..|.|++++.+.|...++.+..
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~-G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD-DMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT-SSCEEEEEEECHHHHHHHHHHTT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC-CCCceEEEEEChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999996 89999999999998877776653
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.7e-46 Score=431.91 Aligned_cols=340 Identities=21% Similarity=0.326 Sum_probs=278.1
Q ss_pred chhhhcccCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 395 QFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.|++++ +++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. ...++|
T Consensus 3 ~fe~l~--L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~g~~lv 70 (523)
T 1oyw_A 3 QAEVLN--LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------NGLTVV 70 (523)
T ss_dssp CCCCSS--HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------SSEEEE
T ss_pred ChhhCC--CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------CCCEEE
Confidence 467776 88999999999 99999999999999999999999999999999999999999842 357899
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH---H-HhcCCcEEEcChHHHHHHHhcCcccccCCceEEEE
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ---K-LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~---~-l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvVi 549 (838)
|+|+++|+.|+.+.++.+ ++.+..+.++.+..+... . ..+.++|+|+||+++....... .+...++++|||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vVi 145 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAV 145 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEE
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEE
Confidence 999999999999988874 667777777766544332 2 2345899999999985321111 123368899999
Q ss_pred eCCCcccccC--cHHHHHHH---HHHCCccceEEEEeeecccchHHHHH--HHccCCCeEEEecCccccccccceeeEEE
Q psy12983 550 DEADRILDIG--FEEDMKQI---VNLLPKRRQTMLFSATTTAKTETLTK--LALKKEPVYIGVDDTKEEATVAGLEQGYV 622 (838)
Q Consensus 550 DEah~l~~~g--f~~~~~~i---l~~l~~~~qil~lSAT~~~~~~~l~~--~~l~~~~~~i~~~~~~~~~~~~~l~~~~~ 622 (838)
||||++.+|| |+..+..+ ...+ ++.+++++|||+++.+..... ..+. .+..+ ...... .++. +.
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~-~~~~~r----~~l~--~~ 216 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLN-DPLIQ-ISSFDR----PNIR--YM 216 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCC-SCEEE-ECCCCC----TTEE--EE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCC-CCeEE-eCCCCC----CceE--EE
Confidence 9999999998 77766554 4444 468899999999987654333 3332 33322 222211 2222 33
Q ss_pred ECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCC
Q psy12983 623 VCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVA 702 (838)
Q Consensus 623 ~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~ 702 (838)
......+...+..++....++++||||++++.++.+++.|++.++.+..+||+|++++|..+++.|++|+.+|||||+++
T Consensus 217 v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~ 296 (523)
T 1oyw_A 217 LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296 (523)
T ss_dssp EEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred EEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 34445677788888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc
Q psy12983 703 ARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 703 ~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
++|+|+|++++||++++|.+.++|+||+||+||. |..|.+++++++.|...++.+.+.
T Consensus 297 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~-g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD-GLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT-SSCEEEEEEECHHHHHHHHHHHHT
T ss_pred hCCCCccCccEEEEECCCCCHHHHHHHhccccCC-CCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999996 899999999999999888888765
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-44 Score=409.87 Aligned_cols=324 Identities=19% Similarity=0.258 Sum_probs=259.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 406 NTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 406 ~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
.+.+.+++ +|| +|+|+|.++++.+++++|+++++|||+|||++|++|++..+ ..+.+++|++||++|+.|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECCHHHHHHH
Confidence 34445555 688 89999999999999999999999999999999999988775 3478899999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCcch---HHHHHHHhcC-CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc---
Q psy12983 485 FGVLKELMKYHHHTYGLIMGGASR---QAEAQKLAKG-INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD--- 557 (838)
Q Consensus 485 ~~~l~~~~~~~~~~v~~l~gg~~~---~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~--- 557 (838)
++.++.+.. .++.+..++|+.+. ..+...+..+ ++|+|+||+++.+++.. +.+.++++||+||||++.+
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccc
Confidence 999999877 78899999999887 5555666665 99999999999887764 4457899999999997764
Q ss_pred --------cCcHHH-HHHHHHHCC-----------ccceEEEEeee-cccchH-HHHHHHccCCCeEEEecCcccccccc
Q psy12983 558 --------IGFEED-MKQIVNLLP-----------KRRQTMLFSAT-TTAKTE-TLTKLALKKEPVYIGVDDTKEEATVA 615 (838)
Q Consensus 558 --------~gf~~~-~~~il~~l~-----------~~~qil~lSAT-~~~~~~-~l~~~~l~~~~~~i~~~~~~~~~~~~ 615 (838)
++|... +..++..++ ...|++++||| .+.... .+....+. +..........
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 229 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-------FTVGRLVSVAR 229 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-------CCSSCCCCCCC
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-------cCcCccccccc
Confidence 567777 778888776 78999999999 444433 23332222 11111223334
Q ss_pred ceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeE-EecCCCChhHHHHHHHHHhcCCce
Q psy12983 616 GLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVM-CIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 616 ~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~-~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
.+.+.+...+ +...+..+++. .++++||||++++.++.+++.|++.++.+. .+||+ +|+ +++|++|+.+
T Consensus 230 ~i~~~~~~~~---~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 230 NITHVRISSR---SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp SEEEEEESSC---CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred cchheeeccC---HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 5555555553 44556666666 347999999999999999999999999998 89995 444 9999999999
Q ss_pred EEEE----ccCCccCCCCCC-ccEEEEeCCC--CCHHHHHHHhcccCcCC-C--CccEEEEEeccCchHHHHHHHH
Q psy12983 695 ILLC----TDVAARGLDIPA-VDWIVQYDPP--DDPKEYIHRVGRTARGE-G--SSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 695 VLVa----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~Qr~GRagR~~-g--~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|||| |+++++|+|+|+ +++||+||+| .+..+|+||+||+||.| | +.|.+++|+ .|...++.+++
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 9999 999999999999 9999999999 99999999999999962 1 589999999 55555555543
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-45 Score=422.55 Aligned_cols=353 Identities=24% Similarity=0.422 Sum_probs=253.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
+++++.+.+.+.||..|+++|.++++.++++ +++++++|||+|||++|+++++..+.. ...+.++||++|+++|
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~----~~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA----SVPKPQAICLAPSREL 201 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT----TCCSCCEEEECSCHHH
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh----CCCCceEEEEECcHHH
Confidence 7788899999999999999999999999998 999999999999999999999987644 1335689999999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-cC
Q psy12983 481 SMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-IG 559 (838)
Q Consensus 481 a~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~-~g 559 (838)
+.|+++.++++....+..+....++..... ...+++|+|+||+++.+.+.... +.+.++++|||||||++.+ .+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDEaH~~~~~~~ 276 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDEADNMLDQQG 276 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECCHHHHTTC--
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEechhhhcccCC
Confidence 999999999998776666655554433322 23368999999999998887654 4568899999999999987 67
Q ss_pred cHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEEC-CchhHHHHHHHHHH
Q psy12983 560 FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVC-PSEKRFLLLFTFLK 638 (838)
Q Consensus 560 f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~~k~~~l~~~l~ 638 (838)
+...+..+...++++.|+++||||+++....+...... .+..+..... ......+.+.+... ....+...+..++.
T Consensus 277 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 277 LGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAP-NANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELYG 353 (508)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHST-TCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC-CCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHHH
Confidence 99999999999999999999999999888888777764 4544443322 22233444555554 34567777888887
Q ss_pred hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeC
Q psy12983 639 KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYD 718 (838)
Q Consensus 639 ~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d 718 (838)
....+++||||+++++++.+++.|.+.+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CCHHHHHHHhcccCcCCCCccEEEEEecc-CchHHHHHHHHc-CCCCccc
Q psy12983 719 PP------DDPKEYIHRVGRTARGEGSSGHALLILRP-EELGFLRYLKQA-KIPLNEF 768 (838)
Q Consensus 719 ~p------~s~~~y~Qr~GRagR~~g~~g~~i~l~~~-~e~~~~~~l~~~-~~~~~~~ 768 (838)
.| .+..+|+||+||+||. |+.|.+++|+.+ ++...++.+++. +.+++++
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~-g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRF-GRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred CCCcccCCCCHHHHHHHhhhcCCC-CCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 99 7899999999999997 899999999985 556666666553 4444433
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-41 Score=398.20 Aligned_cols=332 Identities=17% Similarity=0.191 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy12983 415 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~ 494 (838)
+..+|+|+|.++++.+++++++++++|||+|||++|++|+++.+.... ...+.++||++||++|+.|+.+.++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc--ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 344899999999999999999999999999999999999999886522 122678999999999999999999999888
Q ss_pred cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHH-HHHHHH-C-
Q psy12983 495 HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDM-KQIVNL-L- 571 (838)
Q Consensus 495 ~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~-~~il~~-l- 571 (838)
.+..+..++|+......+..+..+++|+|+||+++.+++.......+.++++|||||||++.+++....+ ..++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 8899999999887776666666778999999999999988765336789999999999999988743322 222222 1
Q ss_pred --CccceEEEEeeecccch--------H---HHHHHHccCCCeEEEecCcccc---ccccceeeEEEEC-----------
Q psy12983 572 --PKRRQTMLFSATTTAKT--------E---TLTKLALKKEPVYIGVDDTKEE---ATVAGLEQGYVVC----------- 624 (838)
Q Consensus 572 --~~~~qil~lSAT~~~~~--------~---~l~~~~l~~~~~~i~~~~~~~~---~~~~~l~~~~~~~----------- 624 (838)
.+..++++||||+.... . .+... + ....+........ .........+...
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~-l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY-L--DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHH-H--TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHh-c--CCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 34689999999995321 1 11111 1 1011111000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy12983 625 -------------------------------------------------------------------------------- 624 (838)
Q Consensus 625 -------------------------------------------------------------------------------- 624 (838)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred --------------------------------------------------CchhHHHHHHHHHHh----cCCCeEEEEec
Q psy12983 625 --------------------------------------------------PSEKRFLLLFTFLKK----NRKKKVMVFFS 650 (838)
Q Consensus 625 --------------------------------------------------~~~~k~~~l~~~l~~----~~~~kvIIF~~ 650 (838)
....|...+..++.. ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 013355555555543 56789999999
Q ss_pred chhhHHHHHHHhhcC------------CCCeEEecCCCChhHHHHHHHHHhc-CCceEEEEccCCccCCCCCCccEEEEe
Q psy12983 651 SCMSVKFHHELLNYI------------DLPVMCIHGKQKQMKRTTTFFQFCN-AETGILLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 651 t~~~~~~l~~~L~~~------------~~~v~~lhg~m~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~~VI~~ 717 (838)
++++++.+++.|++. |.....+||+|++.+|..++++|++ |+.+|||||+++++|+|+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999875 5556677889999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHH
Q psy12983 718 DPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 754 (838)
Q Consensus 718 d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~ 754 (838)
|+|+++.+|+||+|| ||. +.|.+++|+.+.+...
T Consensus 479 d~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVVE 512 (556)
T ss_dssp TCCSCHHHHHHC-----------CCEEEEESCHHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC--CCceEEEEEeCcchHH
Confidence 999999999999999 995 7899999998876543
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-40 Score=400.15 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=262.5
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
..+|++++ +++++.+.+.++||..|+++|.++++. +.+++++++++|||||||++|.+++++.+.. .+.++
T Consensus 7 ~~~~~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~i 78 (715)
T 2va8_A 7 WMPIEDLK--LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------NGGKA 78 (715)
T ss_dssp CCBGGGSS--SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH------SCSEE
T ss_pred cCcHHHcC--CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH------CCCeE
Confidence 35688988 999999999999999999999999999 7889999999999999999999999988754 36799
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
+|++|+++|+.|+++.++.+ ...+..+..++|+....... ...++|+|+|||++...+.... ..++++++|||||
T Consensus 79 l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE 153 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDE 153 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECS
T ss_pred EEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEec
Confidence 99999999999999999543 44578888888876554321 2368999999999999888754 3368999999999
Q ss_pred CCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccc----cc---eeeEEEEC
Q psy12983 552 ADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATV----AG---LEQGYVVC 624 (838)
Q Consensus 552 ah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~----~~---l~~~~~~~ 624 (838)
+|++.+++++..+..++..++ +.|+++||||+++. ..+..... . ..+........... .. ........
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~-~--~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLG-A--EPVATNWRPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHT-C--EEEECCCCSSCEEEEEEEECSSTTEEEEEET
T ss_pred hhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhC-C--CccCCCCCCCCceEEEEecCCcccceeeecC
Confidence 999998889988888887776 79999999999863 44443322 1 11111100000000 00 00001111
Q ss_pred C--------chhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCC------------------------------
Q psy12983 625 P--------SEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYID------------------------------ 666 (838)
Q Consensus 625 ~--------~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~------------------------------ 666 (838)
+ .......+...+. .++++||||+++++++.+++.|.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKEL 306 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHH
T ss_pred cchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHH
Confidence 1 1233344444443 56899999999999999999987541
Q ss_pred ------CCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eC-------CCCCHHHHHHH
Q psy12983 667 ------LPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YD-------PPDDPKEYIHR 729 (838)
Q Consensus 667 ------~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d-------~p~s~~~y~Qr 729 (838)
.++..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||
T Consensus 307 l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr 386 (715)
T 2va8_A 307 LKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQM 386 (715)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHH
T ss_pred HHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999 98 78999999999
Q ss_pred hcccCcCC-CCccEEEEEeccCch
Q psy12983 730 VGRTARGE-GSSGHALLILRPEEL 752 (838)
Q Consensus 730 ~GRagR~~-g~~g~~i~l~~~~e~ 752 (838)
+|||||.+ +..|.|++++.+.+.
T Consensus 387 ~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 387 SGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HTTBCCTTTCSCEEEEEECSCGGG
T ss_pred hhhcCCCCCCCCceEEEEeCCchH
Confidence 99999962 257999999987663
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.7e-40 Score=401.87 Aligned_cols=334 Identities=20% Similarity=0.233 Sum_probs=266.4
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
+|++++ +++++.+.++++||..|+++|.++++. +.+++++++++|||||||++|.+|+++.+.. .+.+++|
T Consensus 2 ~f~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~~l~ 73 (720)
T 2zj8_A 2 RVDELR--VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT------QGGKAVY 73 (720)
T ss_dssp BGGGCC--SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH------HCSEEEE
T ss_pred cHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCCEEEE
Confidence 578887 999999999999999999999999998 8889999999999999999999999988764 2678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++|+++|+.|+++.++.+ ...+..+..++|+...... ....++|+|+||+++..++.... ..++++++|||||+|
T Consensus 74 i~P~raLa~q~~~~~~~l-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDW-EKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIH 148 (720)
T ss_dssp ECSSGGGHHHHHHHTGGG-GGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHH-HhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCc
Confidence 999999999999999644 3457889988887654332 12468999999999998887753 336889999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeE------EEECC--
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQG------YVVCP-- 625 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~------~~~~~-- 625 (838)
++.+++++..+..++..++.+.|+++||||+++. ..+... +.. ..+..... +..+... .....
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~--~~~~~~~r-----p~~l~~~~~~~~~~~~~~~~ 219 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNA--ELIVSDWR-----PVKLRRGVFYQGFVTWEDGS 219 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTE--EEEECCCC-----SSEEEEEEEETTEEEETTSC
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCC--cccCCCCC-----CCcceEEEEeCCeeeccccc
Confidence 9999889999999998887789999999999863 344333 211 11111100 0011111 11111
Q ss_pred ---chhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC---------------------------------CCCe
Q psy12983 626 ---SEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI---------------------------------DLPV 669 (838)
Q Consensus 626 ---~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~---------------------------------~~~v 669 (838)
...+...+...+. .++++||||++++.++.++..|.+. ..++
T Consensus 220 ~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v 297 (720)
T 2zj8_A 220 IDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGV 297 (720)
T ss_dssp EEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTE
T ss_pred hhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCe
Confidence 1223344444443 4579999999999999999988752 1358
Q ss_pred EEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eC----CCCCHHHHHHHhcccCcCC-CCc
Q psy12983 670 MCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YD----PPDDPKEYIHRVGRTARGE-GSS 740 (838)
Q Consensus 670 ~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d----~p~s~~~y~Qr~GRagR~~-g~~ 740 (838)
..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.+ +..
T Consensus 298 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~ 377 (720)
T 2zj8_A 298 AFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV 377 (720)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSE
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999998 76 5889999999999999962 267
Q ss_pred cEEEEEeccCch
Q psy12983 741 GHALLILRPEEL 752 (838)
Q Consensus 741 g~~i~l~~~~e~ 752 (838)
|.|++++.+.+.
T Consensus 378 G~~~~l~~~~~~ 389 (720)
T 2zj8_A 378 GEGIIVSTSDDP 389 (720)
T ss_dssp EEEEEECSSSCH
T ss_pred ceEEEEecCccH
Confidence 999999998773
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-41 Score=419.60 Aligned_cols=325 Identities=19% Similarity=0.217 Sum_probs=253.5
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
..++..|+++|.++++.+.++++++++||||||||++|.+|++..+. .+.+++|++||++|+.|+++.+.+++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 33344899999999999999999999999999999999999999874 37799999999999999999999976
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~ 572 (838)
. .++.++|+.+. ..+++|+|+||++|.+++.... ..++++++|||||||++.+++|+..+..++..++
T Consensus 252 ~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~ 319 (1108)
T 3l9o_A 252 G----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 319 (1108)
T ss_dssp S----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC
T ss_pred C----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhhccccchHHHHHHHHHhcC
Confidence 5 56777887663 3458999999999999888764 3468899999999999999999999999999999
Q ss_pred ccceEEEEeeecccchHHHHHHH-ccCCCeEEEecCccccccccceeeEEEECC--------------------------
Q psy12983 573 KRRQTMLFSATTTAKTETLTKLA-LKKEPVYIGVDDTKEEATVAGLEQGYVVCP-------------------------- 625 (838)
Q Consensus 573 ~~~qil~lSAT~~~~~~~l~~~~-l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-------------------------- 625 (838)
+..|+++||||+++......+.. ....+..+....... ..+..+++...
T Consensus 320 ~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l 395 (1108)
T 3l9o_A 320 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 395 (1108)
T ss_dssp TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS----SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHH
Confidence 99999999999887644332222 112333332221111 11111111000
Q ss_pred -----------------------------chhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCC---------
Q psy12983 626 -----------------------------SEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDL--------- 667 (838)
Q Consensus 626 -----------------------------~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~--------- 667 (838)
...+...+...+.....+++||||++++.|+.++..|...++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 475 (1108)
T 3l9o_A 396 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 475 (1108)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CH
T ss_pred HhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 022333455555566778999999999999999999876322
Q ss_pred ------------------------------CeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEe
Q psy12983 668 ------------------------------PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQY 717 (838)
Q Consensus 668 ------------------------------~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~ 717 (838)
++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||++
T Consensus 476 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESC
T ss_pred HHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEec
Confidence 27999999999999999999999999999999999999999999999976
Q ss_pred CCC--------CCHHHHHHHhcccCcCCC--CccEEEEEeccC-chHHHHHHHHc
Q psy12983 718 DPP--------DDPKEYIHRVGRTARGEG--SSGHALLILRPE-ELGFLRYLKQA 761 (838)
Q Consensus 718 d~p--------~s~~~y~Qr~GRagR~~g--~~g~~i~l~~~~-e~~~~~~l~~~ 761 (838)
+.| .+..+|+||+|||||. | ..|.+++++.+. +...+..+...
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~-G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRR-GLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCS-SSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred CcccCccccccCCHHHHHHhhcccCCC-CCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 653 4788899999999997 6 689999998875 45556555543
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-40 Score=391.61 Aligned_cols=336 Identities=16% Similarity=0.178 Sum_probs=232.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
+|+|+|.++++.+++++++++++|||+|||++|++|+++.+..... ..+.++||++||++|+.|+.+.+++++...+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 7999999999999999999999999999999999999998866311 22678999999999999999999999888889
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHC-----
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLL----- 571 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l----- 571 (838)
.+..++|+......+..+..+++|+|+||+++.+++.......+.++++|||||||++.+.+ +...+...+...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999999877666666666789999999999999887654357889999999999998876 333333333332
Q ss_pred CccceEEEEeeecccch--------HHHHHHHccCCCeEEEecCcccc---ccccceeeEEEEC----------------
Q psy12983 572 PKRRQTMLFSATTTAKT--------ETLTKLALKKEPVYIGVDDTKEE---ATVAGLEQGYVVC---------------- 624 (838)
Q Consensus 572 ~~~~qil~lSAT~~~~~--------~~l~~~~l~~~~~~i~~~~~~~~---~~~~~l~~~~~~~---------------- 624 (838)
.+..++++||||+.... ..+....-......+........ .........+...
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 24579999999996521 11111110011111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy12983 625 -------------------------------------------------------------------------------- 624 (838)
Q Consensus 625 -------------------------------------------------------------------------------- 624 (838)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ----------------------------------------------CchhHHHHHHHHHHh----cCCCeEEEEecchhh
Q psy12983 625 ----------------------------------------------PSEKRFLLLFTFLKK----NRKKKVMVFFSSCMS 654 (838)
Q Consensus 625 ----------------------------------------------~~~~k~~~l~~~l~~----~~~~kvIIF~~t~~~ 654 (838)
....|...+..++.. ....++||||+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 012344555555543 466899999999999
Q ss_pred HHHHHHHhhcCC------------CCeEEecCCCChhHHHHHHHHHhc-CCceEEEEccCCccCCCCCCccEEEEeCCCC
Q psy12983 655 VKFHHELLNYID------------LPVMCIHGKQKQMKRTTTFFQFCN-AETGILLCTDVAARGLDIPAVDWIVQYDPPD 721 (838)
Q Consensus 655 ~~~l~~~L~~~~------------~~v~~lhg~m~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~ 721 (838)
++.+++.|++.+ .....+||+|++.+|..++++|++ |+.+|||||+++++|+|+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999998763 345556679999999999999999 9999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 722 DPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
++.+|+||+|| ||. +.|.+++|+.+.+......+
T Consensus 482 s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT--TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 995 88999999998776555444
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1e-40 Score=415.27 Aligned_cols=322 Identities=19% Similarity=0.245 Sum_probs=259.2
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHH
Q psy12983 408 LKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFG 486 (838)
Q Consensus 408 ~~~l~~-~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~ 486 (838)
.+.+.. +|| +|+++|.++++.+++|+|++++||||||||++|+++++..+ ..+.+++|++||++|+.|+++
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-------~~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------RKGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-------TTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-------hcCCeEEEEechHHHHHHHHH
Confidence 334433 899 79999999999999999999999999999999988888776 357889999999999999999
Q ss_pred HHHHHhhhcCCeEEEEeCCcch---HHHHHHHhcC-CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc-----
Q psy12983 487 VLKELMKYHHHTYGLIMGGASR---QAEAQKLAKG-INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD----- 557 (838)
Q Consensus 487 ~l~~~~~~~~~~v~~l~gg~~~---~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~----- 557 (838)
.++++. ..++.+..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++|||||||++..
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccc
Confidence 999966 667899999999887 6666777766 99999999999888764 5568899999999987654
Q ss_pred ------cCcHHH-HHHHHHHCC-----------ccceEEEEeeec-ccchH-HHHHHHccCCCeEEEecCccccccccce
Q psy12983 558 ------IGFEED-MKQIVNLLP-----------KRRQTMLFSATT-TAKTE-TLTKLALKKEPVYIGVDDTKEEATVAGL 617 (838)
Q Consensus 558 ------~gf~~~-~~~il~~l~-----------~~~qil~lSAT~-~~~~~-~l~~~~l~~~~~~i~~~~~~~~~~~~~l 617 (838)
+||... +..+++.++ .+.|+++||||+ +.... .+....+. + ..........++
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i--~v~~~~~~~~~i 288 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----F--TVGRLVSVARNI 288 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----C--CCCBCCCCCCCE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----E--EeccCCCCcCCc
Confidence 778777 888888877 789999999994 44333 22222221 1 111223344556
Q ss_pred eeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeE-EecCCCChhHHHHHHHHHhcCCceEE
Q psy12983 618 EQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVM-CIHGKQKQMKRTTTFFQFCNAETGIL 696 (838)
Q Consensus 618 ~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~-~lhg~m~~~~R~~i~~~F~~g~~~VL 696 (838)
.+.+..+. +...+..++... ++++||||++++.++.++..|+..++.+. .+||+ |++ +++|++|+.+||
T Consensus 289 ~~~~~~~~---k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 289 THVRISSR---SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEEESCC---CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred eeEEEecC---HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 66666553 455566666663 47999999999999999999999999998 99992 555 999999999999
Q ss_pred EE----ccCCccCCCCCC-ccEEEEeCCCC--------------------------------------------------
Q psy12983 697 LC----TDVAARGLDIPA-VDWIVQYDPPD-------------------------------------------------- 721 (838)
Q Consensus 697 Va----T~~~~~GiDip~-v~~VI~~d~p~-------------------------------------------------- 721 (838)
|| |+++++|||+|+ +++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999998
Q ss_pred ----------------------CHHHHHHHhcccCcCC--C-CccEEEEEeccCchHHHHHHHH
Q psy12983 722 ----------------------DPKEYIHRVGRTARGE--G-SSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 722 ----------------------s~~~y~Qr~GRagR~~--g-~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
+..+|+||+|||||.+ | ..|.+++++ +|...++.|++
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~ 500 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 500 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHH
Confidence 7889999999999941 2 346666666 66666766654
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7e-41 Score=404.55 Aligned_cols=345 Identities=15% Similarity=0.174 Sum_probs=225.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 409 KAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 409 ~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
+.+..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ..+.++||++||++|+.|+.+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999988765321 22368999999999999999999
Q ss_pred HHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHH
Q psy12983 489 KELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQI 567 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~i 567 (838)
+++....+..+..++|+.........+..+++|+|+||++|.+.+.......+.++++|||||||++.+.. +...+...
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99987778899999998765555555566789999999999999887643357889999999999998765 33333333
Q ss_pred HHH-----CCccceEEEEeeeccc--------chHHHHHHHccC--------------------CCeEEEe--cCccccc
Q psy12983 568 VNL-----LPKRRQTMLFSATTTA--------KTETLTKLALKK--------------------EPVYIGV--DDTKEEA 612 (838)
Q Consensus 568 l~~-----l~~~~qil~lSAT~~~--------~~~~l~~~~l~~--------------------~~~~i~~--~~~~~~~ 612 (838)
+.. .++..++++||||+.. ....+....-.. .|..... .......
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 332 2456899999999972 111121111000 0110000 0000000
Q ss_pred ---c----------------------------------------------------------------------------
Q psy12983 613 ---T---------------------------------------------------------------------------- 613 (838)
Q Consensus 613 ---~---------------------------------------------------------------------------- 613 (838)
.
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 0
Q ss_pred ----------------------------ccceeeEEEE-------------C---CchhHHHHHHHHHHhc----CCCeE
Q psy12983 614 ----------------------------VAGLEQGYVV-------------C---PSEKRFLLLFTFLKKN----RKKKV 645 (838)
Q Consensus 614 ----------------------------~~~l~~~~~~-------------~---~~~~k~~~l~~~l~~~----~~~kv 645 (838)
...+.+.+.. . ....|...+..++... .++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 0000000000 0 1234666677777654 67799
Q ss_pred EEEecchhhHHHHHHHhhcCC----CCeEEe--------cCCCChhHHHHHHHHHhc-CCceEEEEccCCccCCCCCCcc
Q psy12983 646 MVFFSSCMSVKFHHELLNYID----LPVMCI--------HGKQKQMKRTTTFFQFCN-AETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 646 IIF~~t~~~~~~l~~~L~~~~----~~v~~l--------hg~m~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~ 712 (838)
||||+++++++.+++.|++.+ +.+..+ ||+|++.+|.+++++|++ |+.+|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999887 788888 559999999999999998 9999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
+||+||+|.+..+|+||+|| ||. +.|.++++++..+......+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~--~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC------------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC--CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 995 67999999998776554444
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.7e-41 Score=402.91 Aligned_cols=340 Identities=19% Similarity=0.226 Sum_probs=261.3
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl 474 (838)
+|++++..+++++.+.++++||..|+++|.++++.+.+++++++++|||||||++|.+++++.+.. +.+++|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEE
Confidence 477776568899999999999999999999999999999999999999999999999999988643 5689999
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 475 ~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
+|+++|+.|+++.++.+ ...+..+..++|+...... ....++|+|+|||++..++.+.. ..++++++|||||+|+
T Consensus 75 ~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHL 149 (702)
T ss_dssp ESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGG
T ss_pred eCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeee
Confidence 99999999999999543 3457888888887665432 12368999999999999888754 3368899999999999
Q ss_pred ccccCcHHHHHHHHHHC---CccceEEEEeeecccchHHHHHHHccCCCeEEEecCcccccc---ccceeeEEEECC---
Q psy12983 555 ILDIGFEEDMKQIVNLL---PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT---VAGLEQGYVVCP--- 625 (838)
Q Consensus 555 l~~~gf~~~~~~il~~l---~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~---~~~l~~~~~~~~--- 625 (838)
+.+++++..+..++..+ +++.|+++||||+++ ...+... +. ...+.......... ...-...+....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~--~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LD--ADYYVSDWRPVPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TT--CEEEECCCCSSCEEEEEECSSEEEEEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hC--CCcccCCCCCccceEEEeeCCeeeccCcchhh
Confidence 99988888887776655 568999999999986 3444443 21 11221111100000 000000011100
Q ss_pred --chhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC------------------------------CCCeEEec
Q psy12983 626 --SEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI------------------------------DLPVMCIH 673 (838)
Q Consensus 626 --~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~------------------------------~~~v~~lh 673 (838)
.......+...+. .++++||||++++.++.+++.|.+. +.++..+|
T Consensus 226 ~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 226 SRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp EEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 0013444444443 5679999999999999999988742 24688999
Q ss_pred CCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eC---CCCCHHHHHHHhcccCcCC-CCccEEEE
Q psy12983 674 GKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YD---PPDDPKEYIHRVGRTARGE-GSSGHALL 745 (838)
Q Consensus 674 g~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d---~p~s~~~y~Qr~GRagR~~-g~~g~~i~ 745 (838)
|+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.+ +..|.|++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999998 76 6889999999999999962 25799999
Q ss_pred EeccCch
Q psy12983 746 ILRPEEL 752 (838)
Q Consensus 746 l~~~~e~ 752 (838)
++.+.+.
T Consensus 384 l~~~~~~ 390 (702)
T 2p6r_A 384 IVGKRDR 390 (702)
T ss_dssp ECCGGGH
T ss_pred EecCccH
Confidence 9998773
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.7e-40 Score=383.98 Aligned_cols=325 Identities=21% Similarity=0.279 Sum_probs=255.7
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.+|| .|+++|..+++.+++|+ |+.++||+|||++|.+|++.... .+.+++||+||++||.|.++++..++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 3899 99999999999999998 99999999999999999984332 36689999999999999999999999
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcC-----cccccCCceEEEEeCCCccc-ccC------
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNT-----PEFLYKNLQCLIIDEADRIL-DIG------ 559 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~-----~~~~~~~l~lvViDEah~l~-~~g------ 559 (838)
...++++.+++||.+.... ....+++|+||||++| .+++... ....++.+.++||||||+|+ +.+
T Consensus 149 ~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 9999999999999876543 3345689999999999 5555433 23456889999999999987 553
Q ss_pred ---------cHHHHHHHHHHCC---------ccceEE-----------------EEeeecccchHHHH-----HHHccCC
Q psy12983 560 ---------FEEDMKQIVNLLP---------KRRQTM-----------------LFSATTTAKTETLT-----KLALKKE 599 (838)
Q Consensus 560 ---------f~~~~~~il~~l~---------~~~qil-----------------~lSAT~~~~~~~l~-----~~~l~~~ 599 (838)
|...+..++..++ +.+|++ ++|||.+.....+. ...+..+
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 6788889999887 367887 89999764332221 2222222
Q ss_pred CeEEEecC----------------------------------cccccccccee---------------------------
Q psy12983 600 PVYIGVDD----------------------------------TKEEATVAGLE--------------------------- 618 (838)
Q Consensus 600 ~~~i~~~~----------------------------------~~~~~~~~~l~--------------------------- 618 (838)
..++..+. .........+.
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 22221100 00000000000
Q ss_pred --------------------eEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCC
Q psy12983 619 --------------------QGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQ 676 (838)
Q Consensus 619 --------------------~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m 676 (838)
..++......|...+...+.. ..+.++||||+|++.++.+++.|++.|+.+..+||++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 113445667788888887764 3567899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCceEEEEccCCccCCCCC--------CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 677 KQMKRTTTFFQFCNAETGILLCTDVAARGLDIP--------AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 677 ~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|+.|.+...|+||+||+||+ |++|.+++|++
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRq-G~~G~s~~~vs 543 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQ-GDPGITQFYLS 543 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGG-GCCEEEEEEEE
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccC-CCCCeEEEEec
Confidence 888887676666655 6999999999999999 788999999999999999999999997 89999999999
Q ss_pred cCch
Q psy12983 749 PEEL 752 (838)
Q Consensus 749 ~~e~ 752 (838)
.+|.
T Consensus 544 ~eD~ 547 (844)
T 1tf5_A 544 MEDE 547 (844)
T ss_dssp TTSS
T ss_pred HHHH
Confidence 8763
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-40 Score=402.33 Aligned_cols=335 Identities=16% Similarity=0.164 Sum_probs=211.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|+..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ...+.++|||+||++|+.|+.+.+++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--ccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999999999999999999999999886621 12277899999999999999999999998
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc-HHHHHHHHHHC-
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF-EEDMKQIVNLL- 571 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf-~~~~~~il~~l- 571 (838)
..++.+..++|+.........+..+++|+|+||+++.+++.......+.++++|||||||++.+.+. ...+..+....
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 8889999999998777766777778999999999999998876533578899999999999988753 33333333321
Q ss_pred ---CccceEEEEeeecccc-----------hHHHHHH------------------H-ccCCCeEEEecCccccc------
Q psy12983 572 ---PKRRQTMLFSATTTAK-----------TETLTKL------------------A-LKKEPVYIGVDDTKEEA------ 612 (838)
Q Consensus 572 ---~~~~qil~lSAT~~~~-----------~~~l~~~------------------~-l~~~~~~i~~~~~~~~~------ 612 (838)
.+..++++||||+... ...+... . .+...............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 4568999999999531 1111111 0 10011111111000000
Q ss_pred --------cccc---------eeeEE------------------------------------------------------
Q psy12983 613 --------TVAG---------LEQGY------------------------------------------------------ 621 (838)
Q Consensus 613 --------~~~~---------l~~~~------------------------------------------------------ 621 (838)
.... .....
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000 00000
Q ss_pred ---------------------------------------------EECCchhHHHHHHHHHHh----cCCCeEEEEecch
Q psy12983 622 ---------------------------------------------VVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSC 652 (838)
Q Consensus 622 ---------------------------------------------~~~~~~~k~~~l~~~l~~----~~~~kvIIF~~t~ 652 (838)
.......|...+..++.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 000012345555555554 5678999999999
Q ss_pred hhHHHHHHHhhcC------------CCCeEEecCCCChhHHHHHHHHHhc-CCceEEEEccCCccCCCCCCccEEEEeCC
Q psy12983 653 MSVKFHHELLNYI------------DLPVMCIHGKQKQMKRTTTFFQFCN-AETGILLCTDVAARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 653 ~~~~~l~~~L~~~------------~~~v~~lhg~m~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~~VI~~d~ 719 (838)
++++.+++.|++. |.....+||+|++.+|..++++|++ |+.+|||||+++++|||+|++++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999863 5566778999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 720 PDDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 720 p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
|+++.+|+||+|| ||. +.|.+++|+.+.+..
T Consensus 722 p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVV 752 (797)
T ss_dssp CSCHHHHHTC----------CCCEEEEECCHHHH
T ss_pred CCCHHHHHHhcCC-CCC--CCceEEEEEeCCcHH
Confidence 9999999999999 995 789999999887654
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.2e-40 Score=412.35 Aligned_cols=386 Identities=17% Similarity=0.218 Sum_probs=287.7
Q ss_pred eeeccCCCCCCCCCCCCCCCCcchhhhhhhhhccCCCCCccccccccccccccCcCCCCCcc--ch----------hhhc
Q psy12983 333 ILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLSIPSILSST--QF----------EALK 400 (838)
Q Consensus 333 ~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--~f----------~~l~ 400 (838)
+.++|+. .|..+.|..+.+.+.+|....+..+++...+...|.............. .+ ....
T Consensus 512 ~~~~y~~------~~~l~vp~~~l~~~~~y~g~~~~~~~l~~l~~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~~ 585 (1151)
T 2eyq_A 512 LMLTYAN------DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 585 (1151)
T ss_dssp EEEECGG------GCEEEEEGGGGGGEEECCCSCSSSCCCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred EEEEecC------CCceeeeHHHhhhHhcccCCCCCCCchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 5666642 3455678888888888865555667777777766655433221100000 00 0001
Q ss_pred ccCCHHHHHHHH-HCCCCCCcHHHHHHHHHHHc----CC--CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 401 GKVCENTLKAIA-DMGFTKMTEIQARTIPPLLE----GR--DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 401 ~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~----~~--dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
...++.+.+.+. .++| ++||+|.++++.+++ ++ |+++++|||+|||++|+++++..+ ..+.+++|
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-------~~g~~vlv 657 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-------DNHKQVAV 657 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-------TTTCEEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-------HhCCeEEE
Confidence 124556666654 4899 579999999999886 54 999999999999999999998876 34679999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH---HHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEE
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA---QKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~---~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvVi 549 (838)
++||++|+.|+++.+++++...++.+..+++..+..+.. ..+.. .++|+|+||+.+.. ...++++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~------~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS------DVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS------CCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC------CccccccceEEE
Confidence 999999999999999998887788888888776654433 33444 48999999986632 245789999999
Q ss_pred eCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 550 DEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
||+|+ |+......+..++.+.++++||||+.++...+...+++ +...+...+.. ...+...+........
T Consensus 732 DEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~-~~~~i~~~~~~----r~~i~~~~~~~~~~~i 801 (1151)
T 2eyq_A 732 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR-DLSIIATPPAR----RLAVKTFVREYDSMVV 801 (1151)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTS-EEEECCCCCCB----CBCEEEEEEECCHHHH
T ss_pred echHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCC-CceEEecCCCC----ccccEEEEecCCHHHH
Confidence 99999 44556667777777899999999999888777766653 33332222111 1122332332222211
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcC--CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCC
Q psy12983 630 FLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYI--DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLD 707 (838)
Q Consensus 630 ~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~--~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiD 707 (838)
...+.. ....+++++|||+++++++.+++.|++. +.++..+||+|++.+|++++++|++|+.+|||||+++++|+|
T Consensus 802 ~~~il~--~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiD 879 (1151)
T 2eyq_A 802 REAILR--EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 879 (1151)
T ss_dssp HHHHHH--HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSC
T ss_pred HHHHHH--HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeec
Confidence 222222 2236789999999999999999999987 789999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCC-CCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 708 IPAVDWIVQYDPP-DDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 708 ip~v~~VI~~d~p-~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
+|++++||+++.+ .++.+|+||+||+||. |+.|+|++++.+.+
T Consensus 880 ip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~-g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQLHQLRGRVGRS-HHQAYAWLLTPHPK 923 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHHHHHHTTCCBT-TBCEEEEEEECCGG
T ss_pred ccCCcEEEEeCCCCCCHHHHHHHHhccCcC-CCceEEEEEECCcc
Confidence 9999999999984 6999999999999997 88999999998754
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-39 Score=398.83 Aligned_cols=324 Identities=19% Similarity=0.240 Sum_probs=257.7
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.++| .|+++|.++++.+.+++++++++|||+|||++|.++++..+. .+.+++|++||++|+.|+++.+.+++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-------~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------TTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------cCCeEEEECChHHHHHHHHHHHHHHh
Confidence 4688 599999999999999999999999999999999999998773 36799999999999999999999876
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~ 572 (838)
. .++.++|+.+.. ..++|+|+||++|.+++.+.. ..++++++|||||+|++.+++++..+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 5 567788876543 357999999999998887653 4568999999999999999999999999999999
Q ss_pred ccceEEEEeeecccchHHHHHHH-ccCCCeEEEecCccccccccceeeEEEECC---------c----------------
Q psy12983 573 KRRQTMLFSATTTAKTETLTKLA-LKKEPVYIGVDDTKEEATVAGLEQGYVVCP---------S---------------- 626 (838)
Q Consensus 573 ~~~qil~lSAT~~~~~~~l~~~~-l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~---------~---------------- 626 (838)
++.|+++||||+++......+.. ....+..+....... ..+.++++... .
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 99999999999987543222221 112233332221110 11222111100 0
Q ss_pred ------------------------------hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCC---------
Q psy12983 627 ------------------------------EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDL--------- 667 (838)
Q Consensus 627 ------------------------------~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~--------- 667 (838)
......+...+......++||||++++.|+.+++.|...++
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11233355555555667999999999999999999987543
Q ss_pred ------------------------------CeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE-
Q psy12983 668 ------------------------------PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ- 716 (838)
Q Consensus 668 ------------------------------~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~- 716 (838)
++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 3789999999999999999999999999999999999999999999999
Q ss_pred ---eCC----CCCHHHHHHHhcccCcCCCC--ccEEEEEeccC-chHHHHHHHHc
Q psy12983 717 ---YDP----PDDPKEYIHRVGRTARGEGS--SGHALLILRPE-ELGFLRYLKQA 761 (838)
Q Consensus 717 ---~d~----p~s~~~y~Qr~GRagR~~g~--~g~~i~l~~~~-e~~~~~~l~~~ 761 (838)
||. |.+..+|+||+|||||. |. .|.+++++.+. +...+..+...
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~-G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRR-GLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCT-TTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccC-CCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 998 88999999999999997 54 69999999875 66666666543
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-38 Score=364.25 Aligned_cols=325 Identities=20% Similarity=0.241 Sum_probs=247.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.|+|+|.++++.++++ ++++.+|||+|||++++.+++..+.. .+.++||++|+++|+.|+.+.++++......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 7999999999999998 99999999999999999999887652 4678999999999999999999998654445
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceE
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQT 577 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qi 577 (838)
.+..++|+....... .....++|+|+||+++.+.+.... +.+.++++||+||||++.+......+...+....+..++
T Consensus 82 ~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 82 KIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred heEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 788888877665433 333457999999999998877653 456889999999999998765444444555555667899
Q ss_pred EEEeeecccchHHHHHHHccCCCeEEEecCcccc---ccccceeeEEE--------------------------------
Q psy12983 578 MLFSATTTAKTETLTKLALKKEPVYIGVDDTKEE---ATVAGLEQGYV-------------------------------- 622 (838)
Q Consensus 578 l~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~---~~~~~l~~~~~-------------------------------- 622 (838)
++||||+......+....-.-............. .........+.
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999854433322211111111111000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy12983 623 -------------------------------------------------------------------------------- 622 (838)
Q Consensus 623 -------------------------------------------------------------------------------- 622 (838)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ------------------ECCchhHHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecC------
Q psy12983 623 ------------------VCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHG------ 674 (838)
Q Consensus 623 ------------------~~~~~~k~~~l~~~l~~----~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg------ 674 (838)
......|...+..++.. ..+.++||||++++.++.+++.|++.++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00223455666666665 57889999999999999999999999999999999
Q ss_pred --CCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 675 --KQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 675 --~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
+|+..+|..++++|++|+.+|||||+++++|+|+|++++||++|.|+++..|.||+||+||. |. |.++.|+.+.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~-g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC-CC-ceEEEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999999999999997 66 999999988764
Q ss_pred H
Q psy12983 753 G 753 (838)
Q Consensus 753 ~ 753 (838)
+
T Consensus 478 e 478 (494)
T 1wp9_A 478 D 478 (494)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=7e-40 Score=392.61 Aligned_cols=321 Identities=20% Similarity=0.288 Sum_probs=244.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 405 ENTLKAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 405 ~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~------~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
+.+.+.++.+|| .||++|.++++.+.++ ++++++||||||||++|++|++..+.. +.+++|++||+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------g~qvlvlaPtr 427 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------TSCEEEECSCH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcH
Confidence 445555677999 9999999999998875 699999999999999999999998754 67899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH---HHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 479 ELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA---QKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 479 ~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~---~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
+|+.|+++.+++++...++.+..++|+.+..+.. ..+.+ .++|+|+||+.+.+ ...++++++|||||+|+
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccch
Confidence 9999999999999988889999999988765533 33444 48999999998754 24568899999999999
Q ss_pred ccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHH
Q psy12983 555 ILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLF 634 (838)
Q Consensus 555 l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~ 634 (838)
+... ....+.......++++||||+.++...+...+.. ....+...+... ..+. ...... .+...+.
T Consensus 502 ~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~-~~s~i~~~p~~r----~~i~--~~~~~~-~~~~~l~ 568 (780)
T 1gm5_A 502 FGVK-----QREALMNKGKMVDTLVMSATPIPRSMALAFYGDL-DVTVIDEMPPGR----KEVQ--TMLVPM-DRVNEVY 568 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCS-SCEEECCCCSSC----CCCE--ECCCCS-STHHHHH
T ss_pred hhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCc-ceeeeeccCCCC----cceE--EEEecc-chHHHHH
Confidence 5321 1222222334689999999998876655443221 222221111111 1111 112222 2333444
Q ss_pred HHHHh--cCCCeEEEEecch--------hhHHHHHHHhhc---CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC
Q psy12983 635 TFLKK--NRKKKVMVFFSSC--------MSVKFHHELLNY---IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV 701 (838)
Q Consensus 635 ~~l~~--~~~~kvIIF~~t~--------~~~~~l~~~L~~---~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~ 701 (838)
..+.. ..+++++|||+++ ..++.+++.|++ .++.+..+||+|++.+|+.++++|++|+.+|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 44443 3567899999966 457888888987 3788999999999999999999999999999999999
Q ss_pred CccCCCCCCccEEEEeCCCC-CHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 702 AARGLDIPAVDWIVQYDPPD-DPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 702 ~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
+++|+|+|++++||++++|. +.++|+||+||+||+ |..|+|++++.+.+..
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~-g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRG-GQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCS-STTCEEECCCCSCCHH
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcC-CCCCEEEEEECCCChH
Confidence 99999999999999999996 789999999999996 8999999999854433
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-38 Score=394.36 Aligned_cols=335 Identities=16% Similarity=0.186 Sum_probs=209.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+.... ...+.++|||+||++|+.|+++.+++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC--SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc--ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999988764421 12267899999999999999999999988
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC-cHHHHHHHHHHC-
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNLL- 571 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~l- 571 (838)
..++.+..++|+.........+..+++|+|+||+++.+++.......+.++++|||||||++.+.+ +...+..+....
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 778999999998876665556666789999999999999887654357889999999999998875 333333333321
Q ss_pred ---CccceEEEEeeecccch--------HHHHH---H------------------HccCCC-eEEEecCccccc------
Q psy12983 572 ---PKRRQTMLFSATTTAKT--------ETLTK---L------------------ALKKEP-VYIGVDDTKEEA------ 612 (838)
Q Consensus 572 ---~~~~qil~lSAT~~~~~--------~~l~~---~------------------~l~~~~-~~i~~~~~~~~~------ 612 (838)
.+..++++||||+.... ..+.. . +..... ............
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 45589999999995310 11111 0 111011 011111000000
Q ss_pred --------ccc------c---eeeEEE-----------------------------------------------------
Q psy12983 613 --------TVA------G---LEQGYV----------------------------------------------------- 622 (838)
Q Consensus 613 --------~~~------~---l~~~~~----------------------------------------------------- 622 (838)
... . ......
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 0 000000
Q ss_pred ----------------------------------------------ECCchhHHHHHHHHHHh----cCCCeEEEEecch
Q psy12983 623 ----------------------------------------------VCPSEKRFLLLFTFLKK----NRKKKVMVFFSSC 652 (838)
Q Consensus 623 ----------------------------------------------~~~~~~k~~~l~~~l~~----~~~~kvIIF~~t~ 652 (838)
......|...+..++.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 00012344455556654 3568999999999
Q ss_pred hhHHHHHHHhhcC------------CCCeEEecCCCChhHHHHHHHHHhc-CCceEEEEccCCccCCCCCCccEEEEeCC
Q psy12983 653 MSVKFHHELLNYI------------DLPVMCIHGKQKQMKRTTTFFQFCN-AETGILLCTDVAARGLDIPAVDWIVQYDP 719 (838)
Q Consensus 653 ~~~~~l~~~L~~~------------~~~v~~lhg~m~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GiDip~v~~VI~~d~ 719 (838)
++++.+++.|++. |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999876 5556677899999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCcCCCCccEEEEEeccCchH
Q psy12983 720 PDDPKEYIHRVGRTARGEGSSGHALLILRPEELG 753 (838)
Q Consensus 720 p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~ 753 (838)
|++..+|+||+|| ||. +.|.+++++...+..
T Consensus 722 p~s~~~~iQr~GR-GR~--~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA--AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSCSHHHHCC----------CCCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC--CCCEEEEEEeCCCHH
Confidence 9999999999999 995 778899998886543
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-38 Score=392.66 Aligned_cols=329 Identities=21% Similarity=0.263 Sum_probs=255.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.++| .|+++|.++++.+++|+++++++|||+|||++|++++...+. .+.+++|++|+++|+.|+++.+++++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 3678 699999999999999999999999999999999999887753 46789999999999999999998865
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~ 572 (838)
. +..+..++|+.+.. ...+|+|+||++|.+++.... ..++++++|||||||++.+++|+..+..++..++
T Consensus 107 ~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp ----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred C--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 3 57788888876542 347999999999998887654 3468899999999999999999999999999999
Q ss_pred ccceEEEEeeecccchHHHHHHHccC-CCeEEEecCccccccc-------------------------------------
Q psy12983 573 KRRQTMLFSATTTAKTETLTKLALKK-EPVYIGVDDTKEEATV------------------------------------- 614 (838)
Q Consensus 573 ~~~qil~lSAT~~~~~~~l~~~~l~~-~~~~i~~~~~~~~~~~------------------------------------- 614 (838)
++.+++++|||+++..+...+..... ....+...........
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999999987654444433211 1111111100000000
Q ss_pred ----------------------------------------------------cceeeEEEECCchhHHHHHHHHHHhcCC
Q psy12983 615 ----------------------------------------------------AGLEQGYVVCPSEKRFLLLFTFLKKNRK 642 (838)
Q Consensus 615 ----------------------------------------------------~~l~~~~~~~~~~~k~~~l~~~l~~~~~ 642 (838)
.....++.......+...+...+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 0000011112234456677788888888
Q ss_pred CeEEEEecchhhHHHHHHHhhcCCC---------------------------------------CeEEecCCCChhHHHH
Q psy12983 643 KKVMVFFSSCMSVKFHHELLNYIDL---------------------------------------PVMCIHGKQKQMKRTT 683 (838)
Q Consensus 643 ~kvIIF~~t~~~~~~l~~~L~~~~~---------------------------------------~v~~lhg~m~~~~R~~ 683 (838)
.++||||++++.|+.++..|...++ ++..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 8999999999999999999987655 5899999999999999
Q ss_pred HHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCC---------CHHHHHHHhcccCcCC-CCccEEEEEec--cCc
Q psy12983 684 TFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPD---------DPKEYIHRVGRTARGE-GSSGHALLILR--PEE 751 (838)
Q Consensus 684 i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~---------s~~~y~Qr~GRagR~~-g~~g~~i~l~~--~~e 751 (838)
+++.|++|+++|||||+++++|||+|+ ..||+++.+. +..+|+||+|||||.| ...|.+++++. ..+
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~ 495 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS 495 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcch
Confidence 999999999999999999999999999 5566555555 9999999999999963 26788888883 345
Q ss_pred hHHHHHHHH
Q psy12983 752 LGFLRYLKQ 760 (838)
Q Consensus 752 ~~~~~~l~~ 760 (838)
...++.+..
T Consensus 496 ~~~~~~~i~ 504 (997)
T 4a4z_A 496 IATFKEVTM 504 (997)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666644
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-38 Score=407.99 Aligned_cols=352 Identities=16% Similarity=0.195 Sum_probs=269.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
+.+...+.+.+.+|..++|+|.++++.++. ++|++++||||||||++|.+|+++.+.+ .++.+++|++|+++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-----~~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-----SSEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-----CTTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-----CCCCEEEEEcChHHHH
Confidence 556677778888999999999999999976 5789999999999999999999999876 4567899999999999
Q ss_pred HHHHHHHHHHh-hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc-cccCCceEEEEeCCCcccccC
Q psy12983 482 MQTFGVLKELM-KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE-FLYKNLQCLIIDEADRILDIG 559 (838)
Q Consensus 482 ~Q~~~~l~~~~-~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~~~~~l~lvViDEah~l~~~g 559 (838)
.|+++.|++.+ ...+.++..++|+...... ...+++|+|||||++..++++... ..++++++||+||+|++.+.
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 99999998755 4468899888887654322 234579999999999888776532 23689999999999998875
Q ss_pred cHHHHHHHHH-------HCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCch---hH
Q psy12983 560 FEEDMKQIVN-------LLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE---KR 629 (838)
Q Consensus 560 f~~~~~~il~-------~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~k 629 (838)
++..+..++. .++++.|+++||||+++..+-..|.+...... ..+.... .+..++.++...+.. .+
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~-~~~~~~~---RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATST-FNFHPNV---RPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTE-EECCGGG---CSSCEEEEEEEECCCSHHHH
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCe-EEeCCCC---CCCCeEEEEEeccCCCchhh
Confidence 5555554443 34678999999999997655555665543332 2222221 122333333322221 11
Q ss_pred H----HHHHHHH-HhcCCCeEEEEecchhhHHHHHHHhhcC----------------------------------CCCeE
Q psy12983 630 F----LLLFTFL-KKNRKKKVMVFFSSCMSVKFHHELLNYI----------------------------------DLPVM 670 (838)
Q Consensus 630 ~----~~l~~~l-~~~~~~kvIIF~~t~~~~~~l~~~L~~~----------------------------------~~~v~ 670 (838)
. ..+...+ +...++++||||++++.|+.++..|... ..+++
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 1 1122223 3346789999999999999888766321 24689
Q ss_pred EecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eC------CCCCHHHHHHHhcccCcCC-CC
Q psy12983 671 CIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YD------PPDDPKEYIHRVGRTARGE-GS 739 (838)
Q Consensus 671 ~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~Qr~GRagR~~-g~ 739 (838)
.+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+||. || .|.+..+|.||+|||||.| +.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999999983 32 3578999999999999973 24
Q ss_pred ccEEEEEeccCchHHHHHHHHcCCCCcc
Q psy12983 740 SGHALLILRPEELGFLRYLKQAKIPLNE 767 (838)
Q Consensus 740 ~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 767 (838)
.|.|++++.+.+..+++.+...+.+++.
T Consensus 1298 ~G~avll~~~~~~~~~~~ll~~~~pveS 1325 (1724)
T 4f92_B 1298 EGRCVIMCQGSKKDFFKKFLYEPLPVES 1325 (1724)
T ss_dssp CEEEEEEEEGGGHHHHHHHTTSCBCCCC
T ss_pred ceEEEEEecchHHHHHHHHhCCCCceee
Confidence 7999999999999999988877777653
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.2e-39 Score=401.12 Aligned_cols=316 Identities=21% Similarity=0.288 Sum_probs=246.9
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy12983 413 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELM 492 (838)
Q Consensus 413 ~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~ 492 (838)
.+||. | ++|.++++.+++|+|++++||||||||+ |.+|++..+.. .+.+++|++||++|+.|+++.+++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------cCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 48998 9 9999999999999999999999999998 88888887654 46789999999999999999999998
Q ss_pred hhcCC----eEEEEeCCcchHHH---HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHH
Q psy12983 493 KYHHH----TYGLIMGGASRQAE---AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMK 565 (838)
Q Consensus 493 ~~~~~----~v~~l~gg~~~~~~---~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~ 565 (838)
...++ .+..++|+.+.... ...+.+ ++|+|+||++|.+++.+ ++++++|||||||++.+ |+..+.
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHH
Confidence 88777 88999998877653 333445 89999999999987765 56899999999999998 457777
Q ss_pred HHHHHC-----------CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHH
Q psy12983 566 QIVNLL-----------PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLF 634 (838)
Q Consensus 566 ~il~~l-----------~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~ 634 (838)
.++..+ +...|++++|||++.. ..+....+. .+..+.+. ........+.+.+. ...+...+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v~--~~~~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-QLLNFDIG--SSRITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCCS--CCEECCCCEEEEEE---SCCCTTTTH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-cceEEEcc--CcccCcCCceEEEe---chhHHHHHH
Confidence 777766 3567899999999886 322222111 11111111 11222334555444 244555666
Q ss_pred HHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEE----ccCCccCCCCCC
Q psy12983 635 TFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLC----TDVAARGLDIPA 710 (838)
Q Consensus 635 ~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVa----T~~~~~GiDip~ 710 (838)
.+++.. ++++||||++++.++.+++.|++. +.+..+||+|. .++++|++|+.+|||| |+++++|||+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 666655 568999999999999999999988 99999999983 7889999999999999 999999999999
Q ss_pred c-cEEEEeCCC---------------------------------------------------------------------
Q psy12983 711 V-DWIVQYDPP--------------------------------------------------------------------- 720 (838)
Q Consensus 711 v-~~VI~~d~p--------------------------------------------------------------------- 720 (838)
| ++||++|.|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 6 999999999
Q ss_pred --CCHHHHHHHhcccCcCCCCcc--EEEEEeccCchHHHHHHHH
Q psy12983 721 --DDPKEYIHRVGRTARGEGSSG--HALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 721 --~s~~~y~Qr~GRagR~~g~~g--~~i~l~~~~e~~~~~~l~~ 760 (838)
.+..+|+||+|||||. |..| .++.++..+|...++.+++
T Consensus 422 ~~~~~~~yiQr~GRagR~-g~~g~~~g~~~~~~~d~~~~~~l~~ 464 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRL-FAGGLTKGASFLLEDDSELLSAFIE 464 (1054)
T ss_dssp EEECHHHHHHHHHTTCCE-ETTEECCEEEEEECSCHHHHHHHHH
T ss_pred ecCcHHHHhhhhchhhhc-cCCCCceEEEEEEecCHHHHHHHHH
Confidence 7899999999999996 5554 4677777777777766654
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-38 Score=407.18 Aligned_cols=346 Identities=23% Similarity=0.285 Sum_probs=261.2
Q ss_pred CCCCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccC----CCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy12983 415 GFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKF----MPRNGTGIIIISPTRELSMQTFGVLK 489 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~----~~~~~~~vlvl~Pt~~La~Q~~~~l~ 489 (838)
||++++++|.++++.++. ++|++++||||||||++|.+++++.+.+... ...++.+++|++|+++|+.|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999875 7899999999999999999999999875322 12357899999999999999999999
Q ss_pred HHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc-cccCCceEEEEeCCCcccccCcHHHHHHHH
Q psy12983 490 ELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE-FLYKNLQCLIIDEADRILDIGFEEDMKQIV 568 (838)
Q Consensus 490 ~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-~~~~~l~lvViDEah~l~~~gf~~~~~~il 568 (838)
+.+...++.+..++|+...... ...+++|+|+|||++..++++... ..++++++|||||+|.+.+ .++..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9998889999999998764322 124589999999998766655432 2368999999999998876 4666665554
Q ss_pred H-------HCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchh---HHH----HHH
Q psy12983 569 N-------LLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEK---RFL----LLF 634 (838)
Q Consensus 569 ~-------~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~---k~~----~l~ 634 (838)
. .+++..|+++||||+++..+-..+...........+... ..+..+.+.++...... +.. .+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~---~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNS---FRPVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGG---GCSSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCC---CccCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 3 346788999999999864333233221100111112211 12233444443333221 111 122
Q ss_pred HHHHh-cCCCeEEEEecchhhHHHHHHHhhcC-------------------------------------CCCeEEecCCC
Q psy12983 635 TFLKK-NRKKKVMVFFSSCMSVKFHHELLNYI-------------------------------------DLPVMCIHGKQ 676 (838)
Q Consensus 635 ~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~-------------------------------------~~~v~~lhg~m 676 (838)
..+.. ..++++||||++++.|+.+++.|.+. ..+++++||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 22222 35679999999999999988887531 24589999999
Q ss_pred ChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE----eCC------CCCHHHHHHHhcccCcCC-CCccEEEE
Q psy12983 677 KQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ----YDP------PDDPKEYIHRVGRTARGE-GSSGHALL 745 (838)
Q Consensus 677 ~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~----~d~------p~s~~~y~Qr~GRagR~~-g~~g~~i~ 745 (838)
++.+|..+++.|++|.++|||||+++++|||+|+.++||. |+. |.+..+|.||+|||||.+ +..|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999995 443 468999999999999963 46799999
Q ss_pred EeccCchHHHHHHHHcCCCCcc
Q psy12983 746 ILRPEELGFLRYLKQAKIPLNE 767 (838)
Q Consensus 746 l~~~~e~~~~~~l~~~~~~~~~ 767 (838)
+..+++...+..+.....+++.
T Consensus 469 ~~~~~~~~~~~~ll~~~~pieS 490 (1724)
T 4f92_B 469 ITSHGELQYYLSLLNQQLPIES 490 (1724)
T ss_dssp EEESTTCCHHHHHTTTCSCCCC
T ss_pred EecchhHHHHHHHHcCCCcchh
Confidence 9999998888888777666654
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=391.99 Aligned_cols=329 Identities=16% Similarity=0.208 Sum_probs=225.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH-HHHHHHHhhhcC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT-FGVLKELMKYHH 496 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~-~~~l~~~~~~~~ 496 (838)
.|+++|.++++.+++|+++++.+|||+|||++|++|++..+..... ...+.++|||+|+++|+.|+ .+.+++++.. .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 8999999999999999999999999999999999999988765211 12236799999999999999 9999998764 4
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhc-----CcccccCCceEEEEeCCCcccccC-cHHHHHHHHHH
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQN-----TPEFLYKNLQCLIIDEADRILDIG-FEEDMKQIVNL 570 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~-----~~~~~~~~l~lvViDEah~l~~~g-f~~~~~~il~~ 570 (838)
+.+..++|+.........+...++|+|+||++|.+.+.. ...+.+.++++|||||||++...+ +...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 788888888766555555667899999999999988743 223456889999999999986543 32323222221
Q ss_pred ----CC---------ccceEEEEeeecccc--------hHHHHHH--HccCCCeEEEecCcccc-ccccceeeEEEECC-
Q psy12983 571 ----LP---------KRRQTMLFSATTTAK--------TETLTKL--ALKKEPVYIGVDDTKEE-ATVAGLEQGYVVCP- 625 (838)
Q Consensus 571 ----l~---------~~~qil~lSAT~~~~--------~~~l~~~--~l~~~~~~i~~~~~~~~-~~~~~l~~~~~~~~- 625 (838)
.. +..++++||||+... ...+... .+............... .....-...+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 11 557899999999973 1111111 11100000000000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy12983 626 -------------------------------------------------------------------------------- 625 (838)
Q Consensus 626 -------------------------------------------------------------------------------- 625 (838)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------chhHHHHHHHHHH----hcC-CCeEE
Q psy12983 626 ------------------------------------------------------SEKRFLLLFTFLK----KNR-KKKVM 646 (838)
Q Consensus 626 ------------------------------------------------------~~~k~~~l~~~l~----~~~-~~kvI 646 (838)
...|...+..++. ... ++++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 0011112222222 223 78999
Q ss_pred EEecchhhHHHHHHHhhcC------CCCeEEecCC--------CChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCcc
Q psy12983 647 VFFSSCMSVKFHHELLNYI------DLPVMCIHGK--------QKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 647 IF~~t~~~~~~l~~~L~~~------~~~v~~lhg~--------m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~ 712 (838)
|||+++++++.+++.|++. |+.+..+||+ |++.+|..++++|++|+.+|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
+||+||+|+++.+|+||+|||||. | +.+++++...+
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~-g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD-E--STYVLVAHSGS 520 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS-S--CEEEEEEESSS
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC-C--ceEEEEEeCCc
Confidence 999999999999999999998764 3 44444444443
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.5e-37 Score=363.85 Aligned_cols=322 Identities=20% Similarity=0.259 Sum_probs=232.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|. .|+++|..+++.+++|+ ++.++||+|||++|.+|++.... .+.+++|++||++||.|+++++..++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-------~g~~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-------TGKGVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-------TSSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHHHHHHH
Confidence 676 99999999999999998 99999999999999999986542 356899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCccc-ccC-------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRIL-DIG------- 559 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~-~~g------- 559 (838)
..++++.+++||.+... +....+++|+||||++| .++++... ...+++++++|+||||+++ +.+
T Consensus 141 ~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp HTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 99999999999987643 34445689999999999 67776542 2456889999999999988 433
Q ss_pred --------cHHHHHHHHHHCCc--------------------cceEE------------------------EEeeecccc
Q psy12983 560 --------FEEDMKQIVNLLPK--------------------RRQTM------------------------LFSATTTAK 587 (838)
Q Consensus 560 --------f~~~~~~il~~l~~--------------------~~qil------------------------~lSAT~~~~ 587 (838)
|...+..++..+++ .+|+. ++|||.+..
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 56677778777764 45553 899997542
Q ss_pred hHHHH-----HHHccCCCe------------------------------------EEEecCcccccccccee--------
Q psy12983 588 TETLT-----KLALKKEPV------------------------------------YIGVDDTKEEATVAGLE-------- 618 (838)
Q Consensus 588 ~~~l~-----~~~l~~~~~------------------------------------~i~~~~~~~~~~~~~l~-------- 618 (838)
...+. ...+..+.. .+.+.. +..+...+.
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~--e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQN--ENQTLASITFQNYFRLY 376 (853)
T ss_dssp ----------------------------------------------------------CCC--CCEEEEEEEHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecc--cccccceeehHHHHhhh
Confidence 21110 000100000 011111 111111111
Q ss_pred ---------------------------------------eEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHH
Q psy12983 619 ---------------------------------------QGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKF 657 (838)
Q Consensus 619 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~ 657 (838)
..++......|...+...+.. ..+.++||||+|+..++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 113455667788888888754 356789999999999999
Q ss_pred HHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc--------------------------
Q psy12983 658 HHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV-------------------------- 711 (838)
Q Consensus 658 l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v-------------------------- 711 (838)
+++.|++.|+++.++||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999988888888899888 599999999999999874
Q ss_pred -----------cEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 712 -----------DWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 712 -----------~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
.+||+++.|.+...|.||+||+||+ |.+|.+++|++.+|.
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRq-Gd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQ-GDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGG-GCCEEEEEEEETTSG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccC-CCCeeEEEEecccHH
Confidence 5999999999999999999999997 899999999998773
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.2e-36 Score=356.18 Aligned_cols=324 Identities=19% Similarity=0.310 Sum_probs=257.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|+ .|+++|..+++.+.+|+ |+.++||+|||++|.+|++.... .+.+++||+||++||.|.++++..++.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-------~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-------AGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-------TTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-------hCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 798 99999999999999988 99999999999999999975432 356899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccCCceEEEEeCCCccc-cc--------
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRIL-DI-------- 558 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~-~~-------- 558 (838)
..++++++++||.+.... ....+++|+||||++| .++++..- ...++.+.++||||||+++ +.
T Consensus 178 ~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 999999999999876433 3344689999999999 67776541 3456889999999999987 32
Q ss_pred -------CcHHHHHHHHHHCC---------ccceEE-----------------EEeeecccchHHHH-----HHHccCCC
Q psy12983 559 -------GFEEDMKQIVNLLP---------KRRQTM-----------------LFSATTTAKTETLT-----KLALKKEP 600 (838)
Q Consensus 559 -------gf~~~~~~il~~l~---------~~~qil-----------------~lSAT~~~~~~~l~-----~~~l~~~~ 600 (838)
+|...+..++..++ +.+|++ ++|||.+.....+. ...+..+.
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 47889999999998 678888 89999775333221 12222222
Q ss_pred eEEE-------ecCc---------------------------ccccccccee----------------------------
Q psy12983 601 VYIG-------VDDT---------------------------KEEATVAGLE---------------------------- 618 (838)
Q Consensus 601 ~~i~-------~~~~---------------------------~~~~~~~~l~---------------------------- 618 (838)
.|+. ++.. .+..+...+.
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 2221 1100 0000111111
Q ss_pred -------------------eEEEECCchhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCC
Q psy12983 619 -------------------QGYVVCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQK 677 (838)
Q Consensus 619 -------------------~~~~~~~~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~ 677 (838)
..++......|...+...+.. ..+.++||||+|++.++.+++.|++.|+++.++||++.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 113445566788888877754 35678999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHhcCCceEEEEccCCccCCCCCCc----------------------------------------------
Q psy12983 678 QMKRTTTFFQFCNAETGILLCTDVAARGLDIPAV---------------------------------------------- 711 (838)
Q Consensus 678 ~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v---------------------------------------------- 711 (838)
+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887888888877 699999999999999975
Q ss_pred ------cEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 712 ------DWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 712 ------~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
.+||+++.|.+...|.||+||+||+ |.+|.+++|++.+|.
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRq-GdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQ-GDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGG-GCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccC-CCCeeEEEEechhHH
Confidence 4999999999999999999999997 899999999998774
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=6.8e-40 Score=373.00 Aligned_cols=353 Identities=16% Similarity=0.184 Sum_probs=234.0
Q ss_pred HHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcch
Q psy12983 429 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASR 508 (838)
Q Consensus 429 ~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~ 508 (838)
.+++|+|+++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce-
Confidence 35678999999999999999999999987755 3578999999999999999887742 2222111100
Q ss_pred HHHHHHHhcCCcEEEcChHHHHHHHhcCc-------ccccCCceEEEEeCCCcccccCcHHHHHHHHHHC-CccceEEEE
Q psy12983 509 QAEAQKLAKGINIIVATPGRLLDHLQNTP-------EFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL-PKRRQTMLF 580 (838)
Q Consensus 509 ~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~-------~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l-~~~~qil~l 580 (838)
.++||+++.+++.... ...++++++|||||+|++ +.++...+..+.... +.+.|+++|
T Consensus 71 -------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (440)
T 1yks_A 71 -------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILM 136 (440)
T ss_dssp -------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred -------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEE
Confidence 3777766543322211 123689999999999998 333433333333332 357999999
Q ss_pred eeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHH
Q psy12983 581 SATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHE 660 (838)
Q Consensus 581 SAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~ 660 (838)
|||+++.+..+... ..+.. .+. ...+..... .++..+.. .++++||||++++.++.+++
T Consensus 137 SAT~~~~~~~~~~~---~~~~~-~~~---------------~~~~~~~~~-~~~~~l~~-~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 137 TATPPGTSDEFPHS---NGEIE-DVQ---------------TDIPSEPWN-TGHDWILA-DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CSSCTTCCCSSCCC---SSCEE-EEE---------------CCCCSSCCS-SSCHHHHH-CCSCEEEECSCHHHHHHHHH
T ss_pred eCCCCchhhhhhhc---CCCee-Eee---------------eccChHHHH-HHHHHHHh-cCCCEEEEeCCHHHHHHHHH
Confidence 99998764432221 11111 000 001111111 11222332 25799999999999999999
Q ss_pred HhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE-------------------eCCCC
Q psy12983 661 LLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ-------------------YDPPD 721 (838)
Q Consensus 661 ~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~-------------------~d~p~ 721 (838)
.|++.++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99999999999999 4688999999999999999999999999999 999986 88999
Q ss_pred CHHHHHHHhcccCcCCCCccEEEEEe---ccCchHHHHHHHHcCCCCccccccch---hhHHHHHHHHHHHhhcHHHHHh
Q psy12983 722 DPKEYIHRVGRTARGEGSSGHALLIL---RPEELGFLRYLKQAKIPLNEFEFSWS---KISDIQLQLEKLISKNYFLNMS 795 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~g~~g~~i~l~---~~~e~~~~~~l~~~~~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~l~~~ 795 (838)
+.++|+||+||+||.++..|.|++|+ ++.+...++.++.. +.+.+.++... .+..........+..++.+...
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDD 349 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTSCCGGGCCCCCSTTHHHHSSSCTTTTCCCHH
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccccccccccccccchhhccCCCCCcccccChh
Confidence 99999999999999647899999996 56777766666542 11111111111 1111111112224556778888
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCccccc
Q psy12983 796 GKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTR 836 (838)
Q Consensus 796 ~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~~ 836 (838)
++++|.++++.+..... ..+...+.++...+.+|++.-.|
T Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 389 (440)
T 1yks_A 350 QRKVFRELVRNCDLPVW-LSWQVAKAGLKTNDRKWCFEGPE 389 (440)
T ss_dssp HHHHHHHHHHTTCCCHH-HHHHHHHTTCCTTCCGGGSCSCG
T ss_pred HHHHHHHHHHhcCCchh-hhhhhhhcCCceeeeeEEecCCC
Confidence 99999999998764332 23555566677777777765543
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.5e-39 Score=383.16 Aligned_cols=372 Identities=13% Similarity=0.124 Sum_probs=260.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
...++|+|+.+++.+++++|+++++|||||||++|++|+++.+.. .+.++||++||++||.|+++.++.
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------~~~~vLvl~PtreLa~Qi~~~l~~----- 237 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------RRLRTLILAPTRVVAAEMEEALRG----- 237 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTT-----
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEcChHHHHHHHHHHhcC-----
Confidence 467888888889999999999999999999999999999988765 367899999999999999987762
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC-cc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP-KR 574 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~-~~ 574 (838)
..+.. .+.... .....+..+.++|.+.+.+.+... ..++++++|||||||++ +.+|...+..+...++ ++
T Consensus 238 -~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~ 308 (618)
T 2whx_A 238 -LPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 308 (618)
T ss_dssp -SCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTS
T ss_pred -CceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccC
Confidence 23331 111100 000123456778888877666554 34688999999999998 6667777877777765 67
Q ss_pred ceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhh
Q psy12983 575 RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMS 654 (838)
Q Consensus 575 ~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~ 654 (838)
.|+++||||++.....+.. .++..+.+.... +. .+...+...+.. ..+++||||+++++
T Consensus 309 ~q~il~SAT~~~~~~~~~~----~~~~~~~v~~~~---------------~~-~~~~~ll~~l~~-~~~~~LVF~~s~~~ 367 (618)
T 2whx_A 309 AAAIFMTATPPGSTDPFPQ----SNSPIEDIEREI---------------PE-RSWNTGFDWITD-YQGKTVWFVPSIKA 367 (618)
T ss_dssp CEEEEECSSCTTCCCSSCC----CSSCEEEEECCC---------------CS-SCCSSSCHHHHH-CCSCEEEECSSHHH
T ss_pred ccEEEEECCCchhhhhhhc----cCCceeeecccC---------------CH-HHHHHHHHHHHh-CCCCEEEEECChhH
Confidence 9999999999876443222 223333222110 00 001112223333 36699999999999
Q ss_pred HHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEE--------------------
Q psy12983 655 VKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWI-------------------- 714 (838)
Q Consensus 655 ~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~V-------------------- 714 (838)
++.+++.|++.++.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +++|
T Consensus 368 a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 368 GNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999999984 788999999999999999999999999997 8888
Q ss_pred EEeCCCCCHHHHHHHhcccCcCCCCccEEEEEec---cCchHHHHHHHHcCCCCccccccchh---hHHHHHHHHHHHhh
Q psy12983 715 VQYDPPDDPKEYIHRVGRTARGEGSSGHALLILR---PEELGFLRYLKQAKIPLNEFEFSWSK---ISDIQLQLEKLISK 788 (838)
Q Consensus 715 I~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~---~~e~~~~~~l~~~~~~~~~~~~~~~~---l~~~~~~l~~~~~~ 788 (838)
|+|+.|.+.++|+||+||+||.++..|.+++|+. ++|...++.+++. +.+++..+.... ......+....+..
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTPEGIIPTLFGPEREKTQAIDG 521 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH-HHHTTCCCTTCCCCCCCGGGGGGCCCCTT
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH-hccccccCCcchhhhccchhhhccccCCc
Confidence 7788899999999999999997456899999997 7777666666543 222222111110 00000111112334
Q ss_pred cHHHHHhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCcccc
Q psy12983 789 NYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMT 835 (838)
Q Consensus 789 ~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~ 835 (838)
.+.+.....++|+++++.+.. .....+.....++...+++|++.-.
T Consensus 522 ~~~l~~~~~~~f~~ll~~~~~-~~~l~~~v~~~~l~~~~~~w~~~~~ 567 (618)
T 2whx_A 522 EFRLRGEQRKTFVELMRRGDL-PVWLSYKVASAGISYKDREWCFTGE 567 (618)
T ss_dssp TTCCCHHHHHHHHHHHHTTCC-CHHHHHHHHHTTCCTTCCGGGTCCC
T ss_pred eeEccHHHHHHHHHHhhccCC-cHHHHHHHHhcCCCccceeEEecCC
Confidence 566777788899999887552 1111133444555555666665443
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-37 Score=362.32 Aligned_cols=312 Identities=16% Similarity=0.158 Sum_probs=233.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
.+|+++|.++++.+++++++++++|||+|||++|++++...+.. .+.++|||+||++|+.|+++.++++....+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 38999999999999999999999999999999999999887754 234999999999999999999988765556
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccce
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ 576 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q 576 (838)
..+..++++.+...+ ...+.+|+|+||+.+... ....++++++|||||+|++.. ..+..+++.+++..+
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 678888887665433 345689999999976432 224467899999999999865 456677788878889
Q ss_pred EEEEeeecccchHHHH-HHHccCCCeEEEecCccc----cccccceeeEEEEC---------------------CchhHH
Q psy12983 577 TMLFSATTTAKTETLT-KLALKKEPVYIGVDDTKE----EATVAGLEQGYVVC---------------------PSEKRF 630 (838)
Q Consensus 577 il~lSAT~~~~~~~l~-~~~l~~~~~~i~~~~~~~----~~~~~~l~~~~~~~---------------------~~~~k~ 630 (838)
+++||||+++...... ...+. .+....+..... .............. ....+.
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMF-GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHH-CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhh-CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 9999999977643322 12221 222222211100 00000001111111 112233
Q ss_pred HHHHHHHHhc---CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEc-cCCccCC
Q psy12983 631 LLLFTFLKKN---RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT-DVAARGL 706 (838)
Q Consensus 631 ~~l~~~l~~~---~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT-~~~~~Gi 706 (838)
..+..++... .+++++||++ +++++.+++.|.+.+.++..+||+|+..+|+++++.|++|+.+||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 3444444443 4445566655 899999999999988899999999999999999999999999999999 9999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEec
Q psy12983 707 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILR 748 (838)
Q Consensus 707 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~ 748 (838)
|+|++++||+++.|.+..+|+||+||+||. |..+.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~-g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRK-HGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTT-TCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhccccc-CCCCceEEEEE
Confidence 999999999999999999999999999997 66664444443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.9e-38 Score=358.48 Aligned_cols=370 Identities=14% Similarity=0.110 Sum_probs=251.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 415 GFTKMTEIQARTIPPLLEGRDL-VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i~~~~dv-lv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
|+.+++|+|+ +|+.+++++++ ++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~---- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTRVVAAEMEEALR---- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCHHHHHHHHHHhc----
Confidence 6789999985 79999998887 999999999999999999987654 36789999999999999998774
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHH-HCC
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVN-LLP 572 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~-~l~ 572 (838)
+..+....+.... ....+..|.++|++.+.+.+... ..++++++|||||||++ +.++......+.. ..+
T Consensus 70 --g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp --TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred --Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 2333222221111 11234579999999998877654 34689999999999987 3333333332322 234
Q ss_pred ccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecch
Q psy12983 573 KRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSC 652 (838)
Q Consensus 573 ~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~ 652 (838)
++.|+++||||++.....+ ....+..+...... + ...+ ..+...+.. ..+++||||+++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~----~~~~~~~~~~~~~~----p---~~~~---------~~~~~~l~~-~~~~~lVF~~s~ 198 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF----PQSNSPIEDIEREI----P---ERSW---------NTGFDWITD-YQGKTVWFVPSI 198 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS----CCCSSCEEEEECCC----C---SSCC---------SSSCHHHHH-CCSCEEEECSSH
T ss_pred CCceEEEEccCCCccchhh----hcCCCceEecCccC----C---chhh---------HHHHHHHHh-CCCCEEEEcCCH
Confidence 5789999999998754332 11223333222100 0 0000 011222333 356999999999
Q ss_pred hhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeC--------------
Q psy12983 653 MSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYD-------------- 718 (838)
Q Consensus 653 ~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d-------------- 718 (838)
++++.+++.|++.++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999754 57999999999999999999999999999 9999999
Q ss_pred ------CCCCHHHHHHHhcccCcCCCC-ccEEEEEeccCc---hHH----HHHHHHcCCCCccccccchhhHHHHHHHHH
Q psy12983 719 ------PPDDPKEYIHRVGRTARGEGS-SGHALLILRPEE---LGF----LRYLKQAKIPLNEFEFSWSKISDIQLQLEK 784 (838)
Q Consensus 719 ------~p~s~~~y~Qr~GRagR~~g~-~g~~i~l~~~~e---~~~----~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 784 (838)
.|.+..+|+||+||+||. |. .|.+++|+...+ ... ...+...+.+.++..+.. ....+.....
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~-g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~ 350 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRN-PAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPT--LFGPEREKTQ 350 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCC-TTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCCCC--CCGGGGGGCC
T ss_pred eeecccccCCHHHHHHhccccCCC-CCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHhHHh--hcCCchhhcc
Confidence 999999999999999997 55 888988875432 111 122222333333221110 0000111111
Q ss_pred HHhhcHHHHHhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCcccc
Q psy12983 785 LISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMT 835 (838)
Q Consensus 785 ~~~~~~~l~~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~ 835 (838)
.....+.+....+++|.++++.+..+. ...+.....++...+.+|++.-.
T Consensus 351 ~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (451)
T 2jlq_A 351 AIDGEFRLRGEQRKTFVELMRRGDLPV-WLSYKVASAGISYKDREWCFTGE 400 (451)
T ss_dssp CCTTTTCCCHHHHHHHHHHHHTSCCCH-HHHHHHHHTTCCTTCCGGGTCSC
T ss_pred CCCcccccCchhHHHHHHHHhhcCCcH-HHhHHHHHcCCCcccchhhhcCC
Confidence 222345566777889999988776443 44455555566666666665443
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-35 Score=341.65 Aligned_cols=294 Identities=19% Similarity=0.225 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.|+++|.++++.+++++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.++++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 7999999999999999999999999999999999988764 567999999999999999888883 56
Q ss_pred e-EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccce
Q psy12983 498 T-YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ 576 (838)
Q Consensus 498 ~-v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q 576 (838)
. +..++|+... ..+|+|+||+++...+.. ..+++++|||||+|++.+.+|.. ++..+ +..+
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 6 7777776543 469999999998776542 12568999999999999887754 44444 3578
Q ss_pred EEEEeeecccc-------------------hHHHHHHHccCCCeE--EEecCccccc-c---------------------
Q psy12983 577 TMLFSATTTAK-------------------TETLTKLALKKEPVY--IGVDDTKEEA-T--------------------- 613 (838)
Q Consensus 577 il~lSAT~~~~-------------------~~~l~~~~l~~~~~~--i~~~~~~~~~-~--------------------- 613 (838)
++++||||... ...+....+. .+.. +.+....... .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999732 1122111111 1111 1111000000 0
Q ss_pred ccceeeE---------------------EEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 614 VAGLEQG---------------------YVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 614 ~~~l~~~---------------------~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
....... .+.+....|...+..+++...++++||||++++.++.+++.|. +..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 0000000 0012234567788888888888999999999999999999984 5679
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCc---cEEEEEecc
Q psy12983 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSS---GHALLILRP 749 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~---g~~i~l~~~ 749 (838)
||+++..+|+.++++|++|+.+|||||+++++|+|+|++++||+++.|++...|.||+||+||. |.. ..+|.++..
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~-g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP-SKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCC-CTTTCCEEEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCC-CCCCceEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999996 433 345556655
Q ss_pred C
Q psy12983 750 E 750 (838)
Q Consensus 750 ~ 750 (838)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-37 Score=357.01 Aligned_cols=356 Identities=16% Similarity=0.166 Sum_probs=236.9
Q ss_pred HHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCc
Q psy12983 427 IPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGA 506 (838)
Q Consensus 427 i~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~ 506 (838)
...+.+++++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.++ +..+....+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECchHHHHHHHHHHhc------CceEeEEeccc
Confidence 3445678999999999999999999999987754 36789999999999999998876 23332222111
Q ss_pred chHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcc-----cccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 507 SRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRI-----LDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 507 ~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l-----~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.. .-..+..+.++|.+.+...+... ..++++++|||||||++ ...+|.... . .+++.|+++||
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~S 150 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMT 150 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEEC
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEE
Confidence 11 01233467788888887766654 34689999999999984 332222211 1 23578999999
Q ss_pred eecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHH
Q psy12983 582 ATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHEL 661 (838)
Q Consensus 582 AT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~ 661 (838)
||++.....+.. ...+... +.. ..+. .+...+...+... .+++||||++++.++.+++.
T Consensus 151 AT~~~~~~~~~~---~~~pi~~-~~~---------------~~~~-~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 151 ATPPGTTDPFPD---SNAPIHD-LQD---------------EIPD-RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp SSCTTCCCSSCC---CSSCEEE-EEC---------------CCCS-SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred cCCCcchhhhcc---CCCCeEE-ecc---------------cCCc-chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999875432211 1122221 100 0000 0001112233333 67999999999999999999
Q ss_pred hhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEE--------------------eCCCC
Q psy12983 662 LNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ--------------------YDPPD 721 (838)
Q Consensus 662 L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~--------------------~d~p~ 721 (838)
|++.++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6788999999999999999999999999999 99999 77999
Q ss_pred CHHHHHHHhcccCcCCCC-ccEEEEEeccC--chHHHHHHHHc-----CCCCccccccchhhHHHHHHHHHHHhhcHHHH
Q psy12983 722 DPKEYIHRVGRTARGEGS-SGHALLILRPE--ELGFLRYLKQA-----KIPLNEFEFSWSKISDIQLQLEKLISKNYFLN 793 (838)
Q Consensus 722 s~~~y~Qr~GRagR~~g~-~g~~i~l~~~~--e~~~~~~l~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~ 793 (838)
+..+|+||+||+||. |. .|.+++|+.+. +...+..+.+. +..+...... .-+..-..+. ..+...+.+.
T Consensus 285 s~~~~~QR~GRaGR~-g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~p~~~k~-~~~~~~~~l~ 361 (459)
T 2z83_A 285 TSASAAQRRGRVGRN-PNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMPNGLVA-QLYGPEREKA-FTMDGEYRLR 361 (459)
T ss_dssp CHHHHHHHHTTSSCC-TTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCTTSCCC-CCCGGGGGGC-CCCTTTTCCC
T ss_pred CHHHHHHhccccCCC-CCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCChHHHHH-hccCCCcccc-cccCcchhcc
Confidence 999999999999997 55 89999999875 43333222221 1222211100 0000001111 1224566778
Q ss_pred HhHHHHHHHHHHHHhccccccccCCCCCCHHHHHhhcCccccc
Q psy12983 794 MSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTR 836 (838)
Q Consensus 794 ~~~~~a~~~~i~~y~~~~~~~~f~~~~ldl~~~a~~~~l~~~~ 836 (838)
...+++|.++++.|... ....+.....++...+++|++.-.|
T Consensus 362 ~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (459)
T 2z83_A 362 GEEKKNFLELLRTADLP-VWLAYKVASNGIQYTDRKWCFDGPR 403 (459)
T ss_dssp HHHHHHHHHHHHTSCCC-HHHHHHHHHTTCCTTCCGGGTCSCG
T ss_pred hHHHHHHHHHHhhcCCC-hhHhHHHhhccCccccceeeeeCCC
Confidence 88999999999987743 4444556666677777777765544
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-36 Score=360.81 Aligned_cols=301 Identities=15% Similarity=0.189 Sum_probs=209.9
Q ss_pred HCCCC-----CCcHHHH-----HHHHHHH------cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 413 DMGFT-----KMTEIQA-----RTIPPLL------EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 413 ~~g~~-----~~~~~Q~-----~ai~~i~------~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.+||. .|+++|+ ++|+.++ +++|+++++|||||||++|++|+++.+.. .+.+++|++|
T Consensus 205 ~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------~~~~~lilaP 278 (673)
T 2wv9_A 205 GNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------KRLRTAVLAP 278 (673)
T ss_dssp EEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------TTCCEEEEES
T ss_pred eccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEcc
Confidence 45655 8999999 9999888 89999999999999999999999987654 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCccc
Q psy12983 477 TRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556 (838)
Q Consensus 477 t~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~ 556 (838)
|++||.|+++.++.+ ++. ...+.... ....+.-+-+.+.+.+.+.+... ..++++++|||||+|++
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~- 344 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT- 344 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC-
T ss_pred HHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCccc-
Confidence 999999999887743 221 11110000 00001122233334443333332 34689999999999998
Q ss_pred ccCcHHHHHHHHHHC-CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHH
Q psy12983 557 DIGFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFT 635 (838)
Q Consensus 557 ~~gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~ 635 (838)
+..+...+..+...+ +.+.|+++||||++..+..+... ..+ ...+.. ..+.... ..++.
T Consensus 345 ~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~-i~~v~~---------------~~~~~~~-~~~l~ 404 (673)
T 2wv9_A 345 DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSP-VHDVSS---------------EIPDRAW-SSGFE 404 (673)
T ss_dssp CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSC-EEEEEC---------------CCCSSCC-SSCCH
T ss_pred CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCc-eEEEee---------------ecCHHHH-HHHHH
Confidence 222223333333333 26789999999998764322110 111 111110 0011111 11122
Q ss_pred HHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE
Q psy12983 636 FLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV 715 (838)
Q Consensus 636 ~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI 715 (838)
.+.. ..+++||||+++++++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++||
T Consensus 405 ~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 405 WITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred HHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 2333 46799999999999999999999999999999993 799999999999999999999999999999 99999
Q ss_pred E--------------------eCCCCCHHHHHHHhcccCcCCCCccEEEEEe---ccCchHHHHHHH
Q psy12983 716 Q--------------------YDPPDDPKEYIHRVGRTARGEGSSGHALLIL---RPEELGFLRYLK 759 (838)
Q Consensus 716 ~--------------------~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~---~~~e~~~~~~l~ 759 (838)
+ |+.|.+.++|+||+||+||.+++.|.|++|+ .+.|..+++.++
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie 545 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTE 545 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHH
Confidence 8 5689999999999999999657899999996 466655554443
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.4e-35 Score=341.96 Aligned_cols=279 Identities=15% Similarity=0.139 Sum_probs=211.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.+++.|.++++.+.++++++++||||||||++|.+|+++ .+.+++|++||++||.|+++.+.+.. +.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------~g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------QGYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----------TTCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----------CCCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 345666777777778899999999999999999988875 25689999999999999998776654 45
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccce-
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ- 576 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q- 576 (838)
.+...+|+.. ...+.+|+|+||++|+. ...+.++++++|||||||++ +.+|...+..+++.++...+
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrLl~----~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKFLA----DGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHHHH----TTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHHHh----CCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 5666677654 24568999999999842 23456788999999999764 55688888889998887666
Q ss_pred -EEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhH
Q psy12983 577 -TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSV 655 (838)
Q Consensus 577 -il~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~ 655 (838)
+++||||++.... . ..+....+...... .+ ........ ++....+++||||++++.+
T Consensus 352 llil~SAT~~~~i~------~-~~p~i~~v~~~~~~----~i----~~~~~~~~-------l~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------V-PHPNIEEVALSNTG----EI----PFYGKAIP-------IEAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------C-CCTTEEEEECBSCS----SE----EETTEEEC-------GGGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------c-CCcceEEEeecccc----hh----HHHHhhhh-------hhhccCCcEEEEeCCHHHH
Confidence 7888999987422 1 11111111100000 00 00000000 1233678999999999999
Q ss_pred HHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEE----------EeC-------
Q psy12983 656 KFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIV----------QYD------- 718 (838)
Q Consensus 656 ~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI----------~~d------- 718 (838)
+.+++.|++.++.+..+||+|++.+ |.++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999875 4556679999999999999997 99988 677
Q ss_pred ----CCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHH
Q psy12983 719 ----PPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGF 754 (838)
Q Consensus 719 ----~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~ 754 (838)
.|.+.++|+||+||+|| ++.|. +.|+.+.+...
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR--g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR--GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS--SSCEE-EEESCCCCBCS
T ss_pred ccccCcCCHHHHHHHhccCCC--CCCCE-EEEEecchhhc
Confidence 89999999999999999 57888 99998876544
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.4e-34 Score=345.72 Aligned_cols=332 Identities=17% Similarity=0.209 Sum_probs=244.4
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
.+|.+++ +++.+.+.+...+ ..|++.|+++|+.++. +++++++||||+|||+ ++|++..... .....+.+++
T Consensus 72 ~~f~~~~--l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~~~~g~~il 144 (773)
T 2xau_A 72 NPFTGRE--FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MPHLENTQVA 144 (773)
T ss_dssp CTTTCSB--CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CGGGGTCEEE
T ss_pred CCccccC--CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cccCCCceEE
Confidence 4678787 9999999999988 6899999999988775 5689999999999998 4666522211 1112366799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhh-cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 473 IISPTRELSMQTFGVLKELMKY-HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~-~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
+++|+++|+.|+++.+...... .+..++........ .....+|+++|||++.+.+... ..+.++++|||||
T Consensus 145 vl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDE 216 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDE 216 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECS
T ss_pred ecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecC
Confidence 9999999999999877665432 22333322221111 1235789999999999877664 3468999999999
Q ss_pred CCc-ccccC-cHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhH
Q psy12983 552 ADR-ILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKR 629 (838)
Q Consensus 552 ah~-l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k 629 (838)
+|. ..+.. +...+..+... .++.++++||||++. ..+... +. ....+.+.... ..+..+|...+..+.
T Consensus 217 ah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~~~-~~-~~~vi~v~gr~-----~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQRY-FN-DAPLLAVPGRT-----YPVELYYTPEFQRDY 286 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHHHH-TT-SCCEEECCCCC-----CCEEEECCSSCCSCH
T ss_pred ccccccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHHHH-hc-CCCcccccCcc-----cceEEEEecCCchhH
Confidence 995 44432 22334444443 357899999999964 344443 32 23334333221 123444444443333
Q ss_pred H----HHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhc-----------CCCCeEEecCCCChhHHHHHHHHHh-----
Q psy12983 630 F----LLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNY-----------IDLPVMCIHGKQKQMKRTTTFFQFC----- 689 (838)
Q Consensus 630 ~----~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~-----------~~~~v~~lhg~m~~~~R~~i~~~F~----- 689 (838)
. ..+..+......+++||||+++++++.+++.|++ .++.+..+||+|++.+|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 2 2334444455688999999999999999999975 4778999999999999999999999
Q ss_pred cCCceEEEEccCCccCCCCCCccEEEEeCC------------------CCCHHHHHHHhcccCcCCCCccEEEEEeccCc
Q psy12983 690 NAETGILLCTDVAARGLDIPAVDWIVQYDP------------------PDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751 (838)
Q Consensus 690 ~g~~~VLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e 751 (838)
+|+.+|||||+++++|||+|++++||+++. |.+..+|+||+|||||. ..|.|+.|+++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~--~~G~~~~l~~~~~ 444 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEA 444 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS--SSEEEEESSCHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC--CCCEEEEEecHHH
Confidence 999999999999999999999999999887 88999999999999995 7899999998765
Q ss_pred h
Q psy12983 752 L 752 (838)
Q Consensus 752 ~ 752 (838)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 4
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.7e-34 Score=322.38 Aligned_cols=271 Identities=16% Similarity=0.155 Sum_probs=192.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.++ +..+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---
Confidence 36899999999999999999999966544 46789999999999999987765 3455544443211
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHH-CCccceEEEEeeecccchHH
Q psy12983 512 AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNL-LPKRRQTMLFSATTTAKTET 590 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~-l~~~~qil~lSAT~~~~~~~ 590 (838)
.-..+..+.+.|.+.+.+.+... ..++++++|||||+|++ +.++......+... .+++.|+++||||+++....
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred --cCCCCceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 11223467778888887666553 44689999999999997 32233333333333 25679999999999975332
Q ss_pred HHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeE
Q psy12983 591 LTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVM 670 (838)
Q Consensus 591 l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~ 670 (838)
+... ..+.. .+.. ..+. .+...+...+... .+++||||+++++++.+++.|++.+..+.
T Consensus 141 ~~~~---~~~i~-~~~~---------------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 141 FPPS---NSPII-DEET---------------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp SCCC---SSCCE-EEEC---------------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hcCC---CCcee-eccc---------------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 2110 11111 1100 0010 1111223344443 56899999999999999999999999999
Q ss_pred EecCCCChhHHHHHHHHHhcCCceEEEEccCCccCCCCCCccE-----------------EEEeCCCCCHHHHHHHhccc
Q psy12983 671 CIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDW-----------------IVQYDPPDDPKEYIHRVGRT 733 (838)
Q Consensus 671 ~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~-----------------VI~~d~p~s~~~y~Qr~GRa 733 (838)
.+||+ +|+.++++|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 588899999999999999999999999999 444 67889999999999999999
Q ss_pred CcCCCCccEEEEEec
Q psy12983 734 ARGEGSSGHALLILR 748 (838)
Q Consensus 734 gR~~g~~g~~i~l~~ 748 (838)
||.+...|.++++..
T Consensus 275 GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 275 GRNPEKLGDIYAYSG 289 (431)
T ss_dssp SCCTTCCCCEEEECS
T ss_pred CCCCCCCCeEEEEcC
Confidence 997334556666653
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-32 Score=325.69 Aligned_cols=303 Identities=18% Similarity=0.173 Sum_probs=187.6
Q ss_pred CCcHHHHHHHHHHHc----C-CCEEEEecCCCCchhhhHHHHHHHHHhccC---CCCCCcEEEEEcCCHHHHHHHH-HHH
Q psy12983 418 KMTEIQARTIPPLLE----G-RDLVGSAKTGSGKTLAFLVPAVELIYNLKF---MPRNGTGIIIISPTRELSMQTF-GVL 488 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~----~-~dvlv~apTGsGKTl~~~lp~l~~l~~~~~---~~~~~~~vlvl~Pt~~La~Q~~-~~l 488 (838)
.|+++|.++++.+++ + +++++++|||+|||++++..+..++.. .+ ....++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~-~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSA-RWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHT-TCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhc-ccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999876 4 668999999999999976665555433 11 1125788999999999999998 666
Q ss_pred HHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCc---ccccCCceEEEEeCCCcccccCcHHHHH
Q psy12983 489 KELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP---EFLYKNLQCLIIDEADRILDIGFEEDMK 565 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~---~~~~~~l~lvViDEah~l~~~gf~~~~~ 565 (838)
+.+ +..+..+.++. ...+.+|+|+||++|........ .+....+++||+||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 33333333321 23467999999999987654221 2345678999999999987643 24556
Q ss_pred HHHHHCCccceEEEEeeecccchHHHHHHHccC-----------------CCeEEEecCccccc--c---------ccce
Q psy12983 566 QIVNLLPKRRQTMLFSATTTAKTETLTKLALKK-----------------EPVYIGVDDTKEEA--T---------VAGL 617 (838)
Q Consensus 566 ~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~-----------------~~~~i~~~~~~~~~--~---------~~~l 617 (838)
.++..++ ..++++|||||......-....+.. .+....+....... . ...+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6777775 4679999999885433222222211 11111111000000 0 0000
Q ss_pred eeEEEECCch-------hHHHH----HHHHHHh-cCCCeEEEEecchhhHHHHHHHhhcCCC--------CeEEecCCCC
Q psy12983 618 EQGYVVCPSE-------KRFLL----LFTFLKK-NRKKKVMVFFSSCMSVKFHHELLNYIDL--------PVMCIHGKQK 677 (838)
Q Consensus 618 ~~~~~~~~~~-------~k~~~----l~~~l~~-~~~~kvIIF~~t~~~~~~l~~~L~~~~~--------~v~~lhg~m~ 677 (838)
.......... .+... +..+++. ...+++||||+++++++.+++.|++.+. .+..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000000110 11112 3333333 3568999999999999999999986532 3778999986
Q ss_pred hhHHHHHHHHHhcCCce---EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcC
Q psy12983 678 QMKRTTTFFQFCNAETG---ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736 (838)
Q Consensus 678 ~~~R~~i~~~F~~g~~~---VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 736 (838)
+ +|+.++++|++|+.+ |||||+++++|+|+|++++||+++.|.+...|+||+||+||.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRL 543 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCC
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhccc
Confidence 4 799999999998866 889999999999999999999999999999999999999996
No 52
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=289.43 Aligned_cols=213 Identities=74% Similarity=1.151 Sum_probs=189.3
Q ss_pred CCccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcE
Q psy12983 391 LSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTG 470 (838)
Q Consensus 391 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 470 (838)
.....|++++..+++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|+++.+...+.....+.+
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 34466777776699999999999999999999999999999999999999999999999999999988765444446788
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
++|++||++|+.|+++.++++....+..+..++|+.........+..+++|+|+||+++.+++.....+.++++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999998888999999999998888888888899999999999999887765678899999999
Q ss_pred CCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEE
Q psy12983 551 EADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYI 603 (838)
Q Consensus 551 Eah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i 603 (838)
|||++.+++|...+..++..+++.+|+++||||+++.+..+.+..++.++.++
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~~v 261 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCEEC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCeee
Confidence 99999999999999999999999999999999999999999999987666553
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5e-32 Score=335.20 Aligned_cols=320 Identities=16% Similarity=0.198 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.|+|+|.+++..++.. .+++++++||+|||++++..+...+.. ....++|||||+ .|+.||.+.+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-----g~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-----GAAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-----SSCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-----CCCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 7999999999988864 589999999999999998888776644 344579999999 99999998887764
Q ss_pred CCeEEEEeCCcchHHHHH--HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcH--HHHHHHHHHC
Q psy12983 496 HHTYGLIMGGASRQAEAQ--KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFE--EDMKQIVNLL 571 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~--~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~--~~~~~il~~l 571 (838)
+..+..+.++........ ......+|+|+|++.+.........+...++++|||||||++.+.+.. ..+..+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 455544443322111100 001246999999998865433323344568999999999999765421 2233333332
Q ss_pred CccceEEEEeeecccc-hH---HHHHH----------------------------HccCCC-------------------
Q psy12983 572 PKRRQTMLFSATTTAK-TE---TLTKL----------------------------ALKKEP------------------- 600 (838)
Q Consensus 572 ~~~~qil~lSAT~~~~-~~---~l~~~----------------------------~l~~~~------------------- 600 (838)
....+++++||||... .. .+... ......
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 3455799999999641 11 00000 000000
Q ss_pred --------------------------------eEEEecCcccccccc-ceeeEE--------------------------
Q psy12983 601 --------------------------------VYIGVDDTKEEATVA-GLEQGY-------------------------- 621 (838)
Q Consensus 601 --------------------------------~~i~~~~~~~~~~~~-~l~~~~-------------------------- 621 (838)
..+..........+. ......
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 000000000000000 000000
Q ss_pred -------------------EECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhc-CCCCeEEecCCCChhHH
Q psy12983 622 -------------------VVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNY-IDLPVMCIHGKQKQMKR 681 (838)
Q Consensus 622 -------------------~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~-~~~~v~~lhg~m~~~~R 681 (838)
..+....|...+..+++...+.++||||+++..++.+++.|.+ .|+++..+||+|++.+|
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 1223345788888888888889999999999999999999995 59999999999999999
Q ss_pred HHHHHHHhcCC--ceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEe
Q psy12983 682 TTTFFQFCNAE--TGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 747 (838)
Q Consensus 682 ~~i~~~F~~g~--~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~ 747 (838)
..++++|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||. |+.+.++++.
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~-Gq~~~v~v~~ 610 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI-GQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCS-SSCSCCEEEE
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccC-CCCceEEEEE
Confidence 99999999998 99999999999999999999999999999999999999999997 7777655553
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=2.7e-32 Score=322.22 Aligned_cols=285 Identities=18% Similarity=0.139 Sum_probs=205.4
Q ss_pred HHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcch
Q psy12983 429 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASR 508 (838)
Q Consensus 429 ~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~ 508 (838)
..+++++++++||||||||+ +++..+.. ....+|++||++||.|+++.+++. +..+..++|+...
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~-------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFS-------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHH-------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHh-------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 44678999999999999998 44444433 123499999999999999998774 6778888887554
Q ss_pred HHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCC-ccceEEEEeeecccc
Q psy12983 509 QAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP-KRRQTMLFSATTTAK 587 (838)
Q Consensus 509 ~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~-~~~qil~lSAT~~~~ 587 (838)
.. ..-....+++++|++.+. ....+++|||||+|++.+.+|+..+..++..++ ...+++++|||.+.
T Consensus 216 iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~- 283 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDL- 283 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHH-
T ss_pred Ee--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHH-
Confidence 10 000012456666654431 236789999999999999999999999888887 77899999999543
Q ss_pred hHHHHHHHccCCCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCC
Q psy12983 588 TETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDL 667 (838)
Q Consensus 588 ~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~ 667 (838)
...+..... ....+.... .. ... ....... ..+.... ...+|||+++++++.+++.|++.++
T Consensus 284 i~~l~~~~~--~~~~v~~~~--r~---~~l---~~~~~~l-------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 284 VMELMYTTG--EEVEVRDYK--RL---TPI---SVLDHAL-------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHT--CCEEEEECC--CS---SCE---EECSSCC-------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC--CceEEEEee--ec---chH---HHHHHHH-------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 333333221 222221110 00 000 0000000 0111222 3458889999999999999999999
Q ss_pred CeEEecCCCChhHHHHHHHHHhc--CCceEEEEccCCccCCCCCCccEEEEeCC--------------CCCHHHHHHHhc
Q psy12983 668 PVMCIHGKQKQMKRTTTFFQFCN--AETGILLCTDVAARGLDIPAVDWIVQYDP--------------PDDPKEYIHRVG 731 (838)
Q Consensus 668 ~v~~lhg~m~~~~R~~i~~~F~~--g~~~VLVaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~y~Qr~G 731 (838)
.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+ ++++||+++. |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 9999999999 779999999999
Q ss_pred ccCcCCCC---ccEEEEEeccCchHHHHHHHHc
Q psy12983 732 RTARGEGS---SGHALLILRPEELGFLRYLKQA 761 (838)
Q Consensus 732 RagR~~g~---~g~~i~l~~~~e~~~~~~l~~~ 761 (838)
||||. |. .|.+++++ +++...++.+...
T Consensus 425 RAGR~-g~~g~~G~v~~l~-~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 425 RAGRF-SSRFKEGEVTTMN-HEDLSLLKEILKR 455 (677)
T ss_dssp TBTCT-TSSCSSEEEEESS-TTHHHHHHHHHHS
T ss_pred CCCCC-CCCCCCEEEEEEe-cchHHHHHHHHhc
Confidence 99997 53 46666654 4455555555543
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=4.2e-31 Score=276.66 Aligned_cols=210 Identities=36% Similarity=0.553 Sum_probs=190.0
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC-CCCCCcEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGTGII 472 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~-~~~~~~~vl 472 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... ....+.+++
T Consensus 29 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 29 LNFYEAN--FPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp SSTTTTT--CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999998875332 123577899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
|++||++|+.|+++.++++....+..+..++|+.+.......+.++++|+|+||+++.+++.... ..+++++++|+|||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lViDEa 185 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLVLDEA 185 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEEETTH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CCcccccEEEEeCH
Confidence 99999999999999999999988999999999999888888888899999999999999887654 45789999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEecC
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD 607 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~ 607 (838)
|++.+++|...+..++..++++.|+++||||+++.+..+....++ ++..+.+..
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~-~~~~i~~~~ 239 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGA 239 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS-SCEEEEECC
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCC-CCEEEEecC
Confidence 999999999999999999999999999999999999999999886 787777654
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=271.51 Aligned_cols=205 Identities=40% Similarity=0.634 Sum_probs=186.1
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+.+++|
T Consensus 43 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----~~~~~~li 116 (249)
T 3ber_A 43 KTFKDLG--VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET----PQRLFALV 116 (249)
T ss_dssp CCTGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CCSSCEEE
T ss_pred CCHHHcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC----CCCceEEE
Confidence 5688887 99999999999999999999999999999999999999999999999999999987652 24568999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++||++|+.|+++.++++....+..+..++|+.....+...+..+++|+|+||+++.+++.....+.++++++||+||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 99999999999999999988888999999999888877777888899999999999998887555667899999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEe
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~ 605 (838)
++.+++|...+..++..++++.|+++||||++..+..+....++ +|..+.+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~-~p~~i~v 247 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALK-NPVKCAV 247 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCS-SCEEEEC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCC-CCEEEEe
Confidence 99999999999999999999999999999999999999998885 6766654
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=269.40 Aligned_cols=209 Identities=49% Similarity=0.826 Sum_probs=183.7
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.........+.+++|
T Consensus 25 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 25 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp SBGGGSC--CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 5688887 99999999999999999999999999999999999999999999999999999988764433345778999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++||++|+.|+++.++++....+..+..++|+.....+...+ .+++|+|+||+++.+++.....+.+.++++||+||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 999999999999999999887788899999988776665554 5789999999999998877655667899999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEec
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 606 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~ 606 (838)
++.+++|...+..++..++++.|+++||||+++.+..+....+. +|.++.+.
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~p~~i~~~ 233 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLK-NPEYVWVH 233 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCS-SCEEEECC
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCC-CCEEEEeC
Confidence 99999999999999999999999999999999999999888885 67776554
No 58
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=266.55 Aligned_cols=205 Identities=34% Similarity=0.562 Sum_probs=173.4
Q ss_pred cchhh-hcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccC--CCCCCcE
Q psy12983 394 TQFEA-LKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRNGTG 470 (838)
Q Consensus 394 ~~f~~-l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~--~~~~~~~ 470 (838)
..|++ ++ +++++++++.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... ....+.+
T Consensus 19 ~~f~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 19 CRFKDAFQ--QYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CSHHHHHT--TCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhHhhhhc--cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 56777 55 9999999999999999999999999999999999999999999999999999988754211 1235778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEe
Q psy12983 471 IIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIID 550 (838)
Q Consensus 471 vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViD 550 (838)
++|++||++|+.|+.+.++.+. ..+..+..++|+.........+.++++|+|+||+++.+++.... ..++++++||+|
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~lViD 174 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS-VNLRSITYLVID 174 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cCcccceEEEEE
Confidence 9999999999999999999975 34778888899888887777888899999999999999877654 557899999999
Q ss_pred CCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEE
Q psy12983 551 EADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYI 603 (838)
Q Consensus 551 Eah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i 603 (838)
|||++.+++|...+..++..++++.|+++||||+++.+..+....++ +|..+
T Consensus 175 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~-~p~~i 226 (228)
T 3iuy_A 175 EADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLK-DPMIV 226 (228)
T ss_dssp CHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCS-SCEEE
T ss_pred CHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999999999999999999999999999988875 56554
No 59
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1e-29 Score=259.04 Aligned_cols=201 Identities=31% Similarity=0.511 Sum_probs=179.2
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++++++.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...+.+++|
T Consensus 3 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~----~~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYC--LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL----KKDNIQAMV 76 (206)
T ss_dssp SSGGGSC--CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT----TSCSCCEEE
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc----cCCCeeEEE
Confidence 4688987 9999999999999999999999999999999999999999999999999999987533 134678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
++||++|+.|+++.++++.... +..+...+|+.........+..+++|+|+||+++.+.+.... ..+++++++|+|||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEa 155 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEA 155 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEECh
Confidence 9999999999999999998776 778888899988877777777889999999999998887653 45688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeE
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVY 602 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~ 602 (838)
|++.+.+|...+..++..++++.|+++||||++..+..+....+. +|..
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~-~p~~ 204 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE-KPYE 204 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS-SCEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC-CCeE
Confidence 999999999999999999998999999999999999998888885 4543
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=4.2e-30 Score=264.75 Aligned_cols=205 Identities=35% Similarity=0.546 Sum_probs=179.2
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.. ...+.+++|
T Consensus 4 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~----~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFP--FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP----ERAEVQAVI 77 (219)
T ss_dssp CCGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT----TSCSCCEEE
T ss_pred CCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh----CcCCceEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999987643 134678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc----CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEE
Q psy12983 474 ISPTRELSMQTFGVLKELMKYH----HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~----~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvVi 549 (838)
++||++|+.|+++.++++.... +..+..++|+.+.......+..+++|+|+||+++.+++.... ..+++++++|+
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lVi 156 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHILVV 156 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEEEE
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEEEE
Confidence 9999999999999999988766 678888888877665544455578999999999999887653 55688999999
Q ss_pred eCCCcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEec
Q psy12983 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 606 (838)
Q Consensus 550 DEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~ 606 (838)
||||++.+++|...+..++..++++.|+++||||++..+.++....++ +|..+.+.
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~p~~~~~~ 212 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYME-NPTFVHVL 212 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCS-SCEEEECC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcC-CCeEEEee
Confidence 999999999999999999999998999999999999999999998885 67666543
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.4e-29 Score=293.61 Aligned_cols=310 Identities=15% Similarity=0.195 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.|+|+|.++++.+. .++++++.++||+|||++++..+...... ....++|||||+ +|+.||.++++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 79999999998763 57899999999999999976555544322 345679999995 688999999998864
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
...+....|+... ......+|+|+|++++.+... +....+++||+||||++.+.+ ......+..++
T Consensus 111 --~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 111 --HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp --TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred --CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 3455555555422 112357999999999865432 233568999999999998764 22334444454
Q ss_pred cceEEEEeeecccc-hHHHHH------------------------------------HHccCCCeEEEecCcc--ccccc
Q psy12983 574 RRQTMLFSATTTAK-TETLTK------------------------------------LALKKEPVYIGVDDTK--EEATV 614 (838)
Q Consensus 574 ~~qil~lSAT~~~~-~~~l~~------------------------------------~~l~~~~~~i~~~~~~--~~~~~ 614 (838)
..+.+++||||... ..++.. ..+ .+..+...... .....
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTTCHHHHTTS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeecccccchhhcC
Confidence 45689999999642 111110 001 11111100000 00000
Q ss_pred cceeeEEEEC---------------------------------------------------------CchhHHHHHHHHH
Q psy12983 615 AGLEQGYVVC---------------------------------------------------------PSEKRFLLLFTFL 637 (838)
Q Consensus 615 ~~l~~~~~~~---------------------------------------------------------~~~~k~~~l~~~l 637 (838)
.......+.+ ....|...+..++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 0111111111 1123444555555
Q ss_pred Hhc--CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhcC-Cce-EEEEccCCccCCCCCCcc
Q psy12983 638 KKN--RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCNA-ETG-ILLCTDVAARGLDIPAVD 712 (838)
Q Consensus 638 ~~~--~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~-VLVaT~~~~~GiDip~v~ 712 (838)
... .+.++||||+++..++.+++.|... +..+..+||+++..+|..++++|+++ +.+ +|+||+++++|+|+|+++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 543 5779999999999999999999875 89999999999999999999999998 555 789999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCcCCCCccE--EEEEeccC
Q psy12983 713 WIVQYDPPDDPKEYIHRVGRTARGEGSSGH--ALLILRPE 750 (838)
Q Consensus 713 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~~~ 750 (838)
+||++|+|+++..|.||+||++|. |+... ++.++...
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~-Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRI-GQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTT-TTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHc-CCCCeeEEEEEEeCC
Confidence 999999999999999999999996 55444 45555554
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=275.94 Aligned_cols=205 Identities=25% Similarity=0.432 Sum_probs=178.8
Q ss_pred CccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCc
Q psy12983 392 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGT 469 (838)
Q Consensus 392 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~ 469 (838)
+...|++++ +++.+++.+.++||..||++|.++|+.++.+ +|+++++|||||||++|++|+++.+.. ...+.
T Consensus 90 ~~~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~----~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYP 163 (300)
T ss_dssp CCCCSGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT----TSCSC
T ss_pred CcCCHhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc----cCCCc
Confidence 457799998 9999999999999999999999999999987 999999999999999999999988643 13456
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEE
Q psy12983 470 GIIIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLI 548 (838)
Q Consensus 470 ~vlvl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvV 548 (838)
++||++||++||.|+++.++.+.... +..+....|+....... ..+++|+||||+++++++.+...+.++++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 89999999999999999999988764 57777777776543221 456899999999999999876666788999999
Q ss_pred EeCCCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEec
Q psy12983 549 IDEADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 606 (838)
Q Consensus 549 iDEah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~ 606 (838)
|||||++.+ .+|...+..++..+++++|+++||||+++.+..+...+++ +|..+.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~-~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS-SCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC-CCeEEEec
Confidence 999999998 6899999999999999999999999999999999999986 67777654
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=4.1e-27 Score=270.13 Aligned_cols=318 Identities=18% Similarity=0.213 Sum_probs=238.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|. .++++|.-..-.+.+|+ |..+.||+|||++|.+|++-..+ .|+.+.|++|+..||.|-++++..++.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-------~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-------IGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-------cCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 788 89999999988888777 99999999999999999974432 377899999999999999999999999
Q ss_pred hcCCeEEEEeCC--------------------------------------------------cchHHHHHHHhcCCcEEE
Q psy12983 494 YHHHTYGLIMGG--------------------------------------------------ASRQAEAQKLAKGINIIV 523 (838)
Q Consensus 494 ~~~~~v~~l~gg--------------------------------------------------~~~~~~~~~l~~~~~IvV 523 (838)
.++++++++... .+..+ ++-.-.+||++
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItY 219 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTY 219 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEE
Confidence 999999998872 11111 11122479999
Q ss_pred cChHHH-HHHHhcCc-----ccccCCceEEEEeCCCccccc---------------------------------Cc----
Q psy12983 524 ATPGRL-LDHLQNTP-----EFLYKNLQCLIIDEADRILDI---------------------------------GF---- 560 (838)
Q Consensus 524 ~Tp~~l-~~~l~~~~-----~~~~~~l~lvViDEah~l~~~---------------------------------gf---- 560 (838)
+|..-| .++|+..- ....+.+.+.||||+|.++=. .|
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 998776 34444321 222467899999999974310 00
Q ss_pred -----------------------------HHHHHHHHHH------C----------------------------------
Q psy12983 561 -----------------------------EEDMKQIVNL------L---------------------------------- 571 (838)
Q Consensus 561 -----------------------------~~~~~~il~~------l---------------------------------- 571 (838)
...+..+... +
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 0000001000 0
Q ss_pred ---------------------------CccceEEEEeeecccchHHHHHHHccCCCeEEEecCccccccccceee-EEEE
Q psy12983 572 ---------------------------PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQ-GYVV 623 (838)
Q Consensus 572 ---------------------------~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~l~~-~~~~ 623 (838)
+...++.+||+|......++...+. ...+.++.... .....+ ..+.
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~IPtnkp---~~R~d~~d~vy 453 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVVIPTHKP---MIRKDHDDLVF 453 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEECCCSSC---CCCEECCCEEE
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEEECCCCC---cceeecCcEEE
Confidence 0012689999999988777776653 22344432211 111222 3455
Q ss_pred CCchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC
Q psy12983 624 CPSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV 701 (838)
Q Consensus 624 ~~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~ 701 (838)
.....|...+...+... .+.++||||+|++.++.+++.|.+.|+.+..+||++.+.++..+...++.| .|+|||++
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdm 531 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNM 531 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETT
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcch
Confidence 67778888888888753 577999999999999999999999999999999997666666666666665 59999999
Q ss_pred CccCCCCC--------CccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCch
Q psy12983 702 AARGLDIP--------AVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752 (838)
Q Consensus 702 ~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~ 752 (838)
++||+||+ +..+||+++.|.+...|.||+||+||+ |.+|.+++|++.+|.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRq-G~~G~a~~fvsleD~ 589 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQ-GDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCS-SCCCEEEEEEETTSH
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccC-CCCeeEEEEechhHH
Confidence 99999998 566999999999999999999999997 899999999998873
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=9.6e-30 Score=265.44 Aligned_cols=205 Identities=32% Similarity=0.497 Sum_probs=171.4
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++++.+.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|+++.+.. ...+.+++|
T Consensus 30 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~----~~~~~~~li 103 (237)
T 3bor_A 30 DNFDDMN--LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI----EFKETQALV 103 (237)
T ss_dssp CSGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT----TSCSCCEEE
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----cCCCceEEE
Confidence 5689987 9999999999999999999999999999999999999999999999999999987643 124678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcC-CcEEEcChHHHHHHHhcCcccccCCceEEEEeCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKG-INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEA 552 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~-~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEa 552 (838)
++||++|+.|+++.++++....+..+..+.|+.....+...+..+ ++|+|+||+++.+.+.... ..++++++||+|||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lViDEa 182 (237)
T 3bor_A 104 LAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVLDEA 182 (237)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEEEESH
T ss_pred EECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEEECCc
Confidence 999999999999999999887788888888888776666666555 8999999999999887653 45688999999999
Q ss_pred CcccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEec
Q psy12983 553 DRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 606 (838)
Q Consensus 553 h~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~ 606 (838)
|++.+++|...+..++..+++..|+++||||+++.+..+....++ +|..+.+.
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~-~p~~i~v~ 235 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMR-DPIRILVK 235 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCS-SCEEEC--
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCC-CCEEEEec
Confidence 999999999999999999999999999999999999999998886 67666543
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=1.8e-29 Score=265.95 Aligned_cols=211 Identities=31% Similarity=0.529 Sum_probs=184.2
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCC-----CCC
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM-----PRN 467 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~-----~~~ 467 (838)
...|++++ +++.+++.|.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...... ...
T Consensus 22 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 22 IENFDELK--LDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCSSGGGS--CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred cCCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 35689987 99999999999999999999999999999999999999999999999999999988653211 123
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEE
Q psy12983 468 GTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCL 547 (838)
Q Consensus 468 ~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lv 547 (838)
+.++||++||++|+.|+++.++.+....+..+..++|+.....+...+..+++|+|+||+++.+++.... ..++++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-CChhhCCEE
Confidence 5689999999999999999999998877888899999998888877888889999999999999887764 557899999
Q ss_pred EEeCCCcccccCcHHHHHHHHHH--CCc--cceEEEEeeecccchHHHHHHHccCCCeEEEecC
Q psy12983 548 IIDEADRILDIGFEEDMKQIVNL--LPK--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD 607 (838)
Q Consensus 548 ViDEah~l~~~gf~~~~~~il~~--l~~--~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~ 607 (838)
|+||||++.+++|...+..++.. ++. +.|+++||||+++.+..+....++ ++..+.+..
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~ 241 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY-NYIFMTVGR 241 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS-SCEEEEEC-
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEECC
Confidence 99999999999999999999985 343 689999999999999999998886 677776654
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=2.5e-29 Score=261.02 Aligned_cols=204 Identities=27% Similarity=0.444 Sum_probs=176.3
Q ss_pred ccchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEE
Q psy12983 393 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGII 472 (838)
Q Consensus 393 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vl 472 (838)
...|++++ +++.+.+.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.. ...+.+++
T Consensus 23 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~----~~~~~~~l 96 (230)
T 2oxc_A 23 PADFESLL--LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL----ENLSTQIL 96 (230)
T ss_dssp -CCGGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----TSCSCCEE
T ss_pred CCCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----cCCCceEE
Confidence 35699997 9999999999999999999999999999999999999999999999999999987643 13467899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 473 IISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 473 vl~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
|++||++|+.|+++.++++.... +..+..++|+.........+ .+++|+|+||+++.+++.... +.+++++++|+||
T Consensus 97 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lViDE 174 (230)
T 2oxc_A 97 ILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY-LNPGSIRLFILDE 174 (230)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS-SCGGGCCEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC-cccccCCEEEeCC
Confidence 99999999999999999987655 78888888888776554444 468999999999999887653 5568899999999
Q ss_pred CCcccccC-cHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEe
Q psy12983 552 ADRILDIG-FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605 (838)
Q Consensus 552 ah~l~~~g-f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~ 605 (838)
||++.+++ |...+..++..+++..|+++||||+++.+..+...++. ++.++.+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~-~p~~i~~ 228 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMR-DPTFVRL 228 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCS-SCEEECC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcC-CCeEEEc
Confidence 99999998 99999999999998999999999999888887777664 6666543
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=5.7e-29 Score=253.56 Aligned_cols=204 Identities=35% Similarity=0.565 Sum_probs=178.6
Q ss_pred chhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEE
Q psy12983 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474 (838)
Q Consensus 395 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl 474 (838)
+|++++ +++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.... ....+.+++|+
T Consensus 2 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFP--LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-ERGRKPRALVL 78 (207)
T ss_dssp CGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-CTTCCCSEEEE
T ss_pred ChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCcEEEE
Confidence 488887 999999999999999999999999999999999999999999999999999998764321 12346789999
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 475 ~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
+||++|+.|+++.++.+... ..+..++|+.........+..+++|+|+||+++.+++.... ..+++++++|+||||+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADE 155 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS-SCCTTCSEEEEESHHH
T ss_pred ECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC-cchhhceEEEEEChhH
Confidence 99999999999999998654 67778888888777777777889999999999998887643 5578899999999999
Q ss_pred ccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEe
Q psy12983 555 ILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605 (838)
Q Consensus 555 l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~ 605 (838)
+.+++|...+..++..++++.|+++||||+++.+..+...++. +|..+.+
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMK-NPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCS-SCEEEEC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcC-CCeEEEc
Confidence 9999999999999999999999999999999999999888885 6666543
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=4e-29 Score=258.20 Aligned_cols=204 Identities=33% Similarity=0.539 Sum_probs=172.4
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
.+|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+.. ...+.+++|
T Consensus 14 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~----~~~~~~~li 87 (224)
T 1qde_A 14 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT----SVKAPQALM 87 (224)
T ss_dssp CCGGGGT--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----TCCSCCEEE
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc----cCCCceEEE
Confidence 5699998 9999999999999999999999999999999999999999999999999999987643 134678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEAD 553 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah 553 (838)
++||++|+.|+++.++++....+..+..++|+.........+.+ ++|+|+||+++.+.+.... ..++++++||+||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iViDEah 165 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEAD 165 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC-cchhhCcEEEEcChh
Confidence 99999999999999999988788888888888776655544433 8999999999998887753 556889999999999
Q ss_pred cccccCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEEEec
Q psy12983 554 RILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 606 (838)
Q Consensus 554 ~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~ 606 (838)
++.+++|...+..++..+++..|+++||||+++.+..+...+++ ++..+.+.
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~p~~i~~~ 217 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR-NPVRILVK 217 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCS-SCEEEC--
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCC-CCEEEEec
Confidence 99999999999999999999999999999999999999988885 66666554
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.6e-28 Score=252.92 Aligned_cols=202 Identities=28% Similarity=0.519 Sum_probs=175.5
Q ss_pred cchhhhcccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEE
Q psy12983 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIII 473 (838)
Q Consensus 394 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlv 473 (838)
..|++++ +++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+.. ...+.+++|
T Consensus 14 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~----~~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP----VTGQVSVLV 87 (220)
T ss_dssp CCSTTSC--CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC----CTTCCCEEE
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc----cCCCEEEEE
Confidence 5688887 9999999999999999999999999999999999999999999999999999987532 123458999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc-CCeEEEEeCCcchHHHHHHHhc-CCcEEEcChHHHHHHHhcCcccccCCceEEEEeC
Q psy12983 474 ISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEAQKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDE 551 (838)
Q Consensus 474 l~Pt~~La~Q~~~~l~~~~~~~-~~~v~~l~gg~~~~~~~~~l~~-~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDE 551 (838)
++||++|+.|+++.++++.... +..+..++|+.+.......+.. .++|+|+||+++.+++.... ..+++++++|+||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDE 166 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDE 166 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEEEcC
Confidence 9999999999999999987765 7888888998887666665554 57999999999999887653 5578999999999
Q ss_pred CCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHHHccCCCeEE
Q psy12983 552 ADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYI 603 (838)
Q Consensus 552 ah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i 603 (838)
||++.+ .+|...+..++..++++.|++++|||+++.+..+...+++ +|..+
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~p~~i 218 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ-DPMEI 218 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCS-SCEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcC-CCeEE
Confidence 999987 4788899999999988999999999999999998888775 56554
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=1.2e-27 Score=293.73 Aligned_cols=313 Identities=16% Similarity=0.135 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHHc--------------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH
Q psy12983 418 KMTEIQARTIPPLLE--------------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ 483 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~--------------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q 483 (838)
.|+|+|.+|++.+++ +++.+++++||||||+++ ++++..+.. .....++|||+|+++|+.|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~----~~~~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE----LDFIDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT----CTTCCEEEEEECGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh----cCCCceEEEEeCcHHHHHH
Confidence 599999999999875 368999999999999997 555555432 1234689999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCcchHHHHHHHh-cCCcEEEcChHHHHHHHhcCcc-cccCCceEEEEeCCCcccccCcH
Q psy12983 484 TFGVLKELMKYHHHTYGLIMGGASRQAEAQKLA-KGINIIVATPGRLLDHLQNTPE-FLYKNLQCLIIDEADRILDIGFE 561 (838)
Q Consensus 484 ~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IvV~Tp~~l~~~l~~~~~-~~~~~l~lvViDEah~l~~~gf~ 561 (838)
+.+.++.+... .+.++.+.......+. .+.+|+|+||++|..++..... ..++...+||+||||++.. +
T Consensus 346 ~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 346 TMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 99988886542 1234455555555554 4689999999999987764321 2346789999999999653 3
Q ss_pred HHHHHHHHHCCccceEEEEeeecccchH---------------------HHHHHHccCCCeEEEecCcccc---------
Q psy12983 562 EDMKQIVNLLPKRRQTMLFSATTTAKTE---------------------TLTKLALKKEPVYIGVDDTKEE--------- 611 (838)
Q Consensus 562 ~~~~~il~~l~~~~qil~lSAT~~~~~~---------------------~l~~~~l~~~~~~i~~~~~~~~--------- 611 (838)
..+..+...++ +.++++|||||..... .....+.- -+..+........
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l-~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKV-LKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSS-CCEEEEECCCCGGGHHHHTCCC
T ss_pred HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCc-CCeEEEEEeccchhhhcccccc
Confidence 44566777775 4789999999985321 11111111 1111111100000
Q ss_pred -ccccceeeEEEECCchhHHHHHHH-HHH---hc--------CCCeEEEEecchhhHHHHHHHhhcCC------------
Q psy12983 612 -ATVAGLEQGYVVCPSEKRFLLLFT-FLK---KN--------RKKKVMVFFSSCMSVKFHHELLNYID------------ 666 (838)
Q Consensus 612 -~~~~~l~~~~~~~~~~~k~~~l~~-~l~---~~--------~~~kvIIF~~t~~~~~~l~~~L~~~~------------ 666 (838)
.....+.+... .....+...+.. +++ .. .+.+++|||+++.+|..+++.|.+.+
T Consensus 495 ~~~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 00000000000 012223333332 222 11 34689999999999999999997653
Q ss_pred CCe-EEecCC----------C----------Ch-----------------------------hHHHHHHHHHhcCCceEE
Q psy12983 667 LPV-MCIHGK----------Q----------KQ-----------------------------MKRTTTFFQFCNAETGIL 696 (838)
Q Consensus 667 ~~v-~~lhg~----------m----------~~-----------------------------~~R~~i~~~F~~g~~~VL 696 (838)
..+ .++||+ + ++ ..|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 455 455642 2 22 147889999999999999
Q ss_pred EEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCC---ccEEEEEec
Q psy12983 697 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGS---SGHALLILR 748 (838)
Q Consensus 697 VaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~---~g~~i~l~~ 748 (838)
|+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.++. .|.++.|+.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 567899999999999999999996322 255555554
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=255.49 Aligned_cols=210 Identities=32% Similarity=0.481 Sum_probs=173.2
Q ss_pred cchhhhc--ccCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEE
Q psy12983 394 TQFEALK--GKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471 (838)
Q Consensus 394 ~~f~~l~--~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~v 471 (838)
..|+++. .++++.+++.+.++||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ....+.++
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---~~~~~~~~ 101 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ---PANKGFRA 101 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS---CCSSSCCE
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh---cccCCceE
Confidence 4577662 239999999999999999999999999999999999999999999999999999988743 12356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHH-HHHhcCCcEEEcChHHHHHHHhcCc-ccccCCceEEEE
Q psy12983 472 IIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEA-QKLAKGINIIVATPGRLLDHLQNTP-EFLYKNLQCLII 549 (838)
Q Consensus 472 lvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~-~~l~~~~~IvV~Tp~~l~~~l~~~~-~~~~~~l~lvVi 549 (838)
+|++||++|+.|+++.++++....+..+..+.++....... .....+++|+|+||+++.+++.... .+.++++++||+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 102 LIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99999999999999999999887788777766554332211 1123468999999999999887764 356789999999
Q ss_pred eCCCccccc---CcHHHHHHHHHHC-CccceEEEEeeecccchHHHHHHHccCCCeEEEecC
Q psy12983 550 DEADRILDI---GFEEDMKQIVNLL-PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD 607 (838)
Q Consensus 550 DEah~l~~~---gf~~~~~~il~~l-~~~~qil~lSAT~~~~~~~l~~~~l~~~~~~i~~~~ 607 (838)
||||++.++ +|...+..++..+ +++.|+++||||+++.+..+....++ ++..+.+..
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~-~p~~i~~~~ 242 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD-NVISVSIGA 242 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS-SCEEEEECC
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC-CCEEEEeCC
Confidence 999999884 6888888887765 45789999999999999999998885 777776654
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.3e-26 Score=275.73 Aligned_cols=324 Identities=16% Similarity=0.183 Sum_probs=217.2
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLL---------EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~---------~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
.++|+|.+++..+. .+...|+..+||+|||+.++..+...+...........++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999999874 3467899999999999998777766654322111234569999996 8899999999
Q ss_pred HHHhhhcCCeEEEEeCCcchHHHH--HHH-hc-----CCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCc
Q psy12983 489 KELMKYHHHTYGLIMGGASRQAEA--QKL-AK-----GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF 560 (838)
Q Consensus 489 ~~~~~~~~~~v~~l~gg~~~~~~~--~~l-~~-----~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf 560 (838)
.++... ...+...+++....... ... .. ..+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH---hhcCCccEEEEECceecCChh-
Confidence 998764 45555556654332211 111 11 368999999998765432 233568999999999998754
Q ss_pred HHHHHHHHHHCCccceEEEEeeecccch-H------------------HHHHHHc-------------------------
Q psy12983 561 EEDMKQIVNLLPKRRQTMLFSATTTAKT-E------------------TLTKLAL------------------------- 596 (838)
Q Consensus 561 ~~~~~~il~~l~~~~qil~lSAT~~~~~-~------------------~l~~~~l------------------------- 596 (838)
... ...+..++ ....+++||||..+. . .+...+.
T Consensus 209 ~~~-~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 NQT-YLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp HHH-HHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred hHH-HHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 222 22333343 346799999985432 0 0000000
Q ss_pred -c--CCCeEEEecCccccccccceeeEEEEC-------------------------------------------------
Q psy12983 597 -K--KEPVYIGVDDTKEEATVAGLEQGYVVC------------------------------------------------- 624 (838)
Q Consensus 597 -~--~~~~~i~~~~~~~~~~~~~l~~~~~~~------------------------------------------------- 624 (838)
. -.+..+..........+.......+.+
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0 000000000000000000000000000
Q ss_pred -----------------------------CchhHHHHHHHHHH---hcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEe
Q psy12983 625 -----------------------------PSEKRFLLLFTFLK---KNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCI 672 (838)
Q Consensus 625 -----------------------------~~~~k~~~l~~~l~---~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~l 672 (838)
....|...+..++. ...+.++|||++++..++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 01223333333333 2357899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhcCCc---eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCcc--EEEEEe
Q psy12983 673 HGKQKQMKRTTTFFQFCNAET---GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSG--HALLIL 747 (838)
Q Consensus 673 hg~m~~~~R~~i~~~F~~g~~---~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g--~~i~l~ 747 (838)
||+++..+|..++++|++++. .+|++|+++++|+|++++++||+||+|+++..+.|++||++|. |+.. .+|.|+
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~-Gq~~~v~v~~lv 525 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD-GQKKTCYIYRLL 525 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST-TCCSCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc-CCCCceEEEEEE
Confidence 999999999999999999875 4899999999999999999999999999999999999999996 5443 455566
Q ss_pred ccC
Q psy12983 748 RPE 750 (838)
Q Consensus 748 ~~~ 750 (838)
...
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 654
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=283.10 Aligned_cols=329 Identities=17% Similarity=0.235 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~----~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+++|+|.+++..+. .+++.|+..+||+|||++++..+...+... .....+||||| .+|+.||.+.+.++..
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWAP 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH----SCCSCEEEECC-TTTHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc----CCCCCEEEEEC-chHHHHHHHHHHHHCC
Confidence 79999999998776 688999999999999998876665554331 23556899999 6788999999988864
Q ss_pred hcCCeEEEEeCCcchHHHHHHH------------hcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcH
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKL------------AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFE 561 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l------------~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~ 561 (838)
...+...+|+.......... ....+|+|+|++.+...... +....+++|||||||++.+..
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--
Confidence 45666666665544433322 12478999999999764332 222357899999999997643
Q ss_pred HHHHHHHHHCCccceEEEEeeecccc-hHHHHHH--HccC-----------------------------CCeEEEecCcc
Q psy12983 562 EDMKQIVNLLPKRRQTMLFSATTTAK-TETLTKL--ALKK-----------------------------EPVYIGVDDTK 609 (838)
Q Consensus 562 ~~~~~il~~l~~~~qil~lSAT~~~~-~~~l~~~--~l~~-----------------------------~~~~i~~~~~~ 609 (838)
......+..++ ....+++||||..+ ..++... ++.. .+..+......
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 23334444443 34568899998432 1111110 0000 01111000000
Q ss_pred ccccccceeeEEEECC----------------------------------------------------------------
Q psy12983 610 EEATVAGLEQGYVVCP---------------------------------------------------------------- 625 (838)
Q Consensus 610 ~~~~~~~l~~~~~~~~---------------------------------------------------------------- 625 (838)
............+.+.
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 0000000000011000
Q ss_pred -----------chhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC
Q psy12983 626 -----------SEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE 692 (838)
Q Consensus 626 -----------~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~ 692 (838)
...|...+..++... .+.++|||+.....++.+...|...|+.+..+||+++..+|..++++|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 123445555555543 5679999999999999999999999999999999999999999999999865
Q ss_pred c---eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCc--cEEEEEeccC--chHHHHHHHH
Q psy12983 693 T---GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSS--GHALLILRPE--ELGFLRYLKQ 760 (838)
Q Consensus 693 ~---~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~--g~~i~l~~~~--e~~~~~~l~~ 760 (838)
. .+|++|.++++|+|++.+++||+||+|+++..+.||+||++|. |+. ..++.|+... |...++...+
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-GQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI-GQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS-SCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhc-CCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 4 4899999999999999999999999999999999999999996 444 4455566664 3444444433
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=1.1e-24 Score=259.10 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 628 KRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 628 ~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
.+...+...+.. ..+.++||||+|+..++.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 344445444443 256799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCC-----CCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHH
Q psy12983 706 LDIPAVDWIVQYDP-----PDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLK 759 (838)
Q Consensus 706 iDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~ 759 (838)
+|+|++++||++|. |.+..+|+||+|||||. ..|.+++++++.+....+.+.
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~--~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS--TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC--CCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999998 88999999999999996 479999999987766555443
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=5.1e-23 Score=240.34 Aligned_cols=131 Identities=23% Similarity=0.333 Sum_probs=113.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|+ .|+++|..+++.+++|+ ++.+.||+|||++|.+|++.... .+.+++|++||++||.|.++++..++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-------~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-------TGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-------TCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-------hCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 899 99999999999999998 99999999999999999965432 356899999999999999999999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHH-HHHHhcCc-----ccccC---CceEEEEeCCCccc
Q psy12983 494 YHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRL-LDHLQNTP-----EFLYK---NLQCLIIDEADRIL 556 (838)
Q Consensus 494 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l-~~~l~~~~-----~~~~~---~l~lvViDEah~l~ 556 (838)
.+++++.+++||.+... +....+++|+||||++| .++++... ...++ .+.++||||+|+++
T Consensus 146 ~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999987543 33345789999999999 78877652 24467 89999999999865
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=3.7e-24 Score=209.69 Aligned_cols=153 Identities=29% Similarity=0.464 Sum_probs=142.6
Q ss_pred cccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCC
Q psy12983 613 TVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAE 692 (838)
Q Consensus 613 ~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~ 692 (838)
...++.+.++.++...|...+..+++....+++||||++++.++.+++.|.+.++.+..+||+|++.+|..++++|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34568888999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCc
Q psy12983 693 TGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLN 766 (838)
Q Consensus 693 ~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~ 766 (838)
.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+.+...++.+++ .+.+++
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA-GNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT-TCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC-CCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 99999999999999999999999999999999999999999997 89999999999999999888876 344443
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.91 E-value=8.7e-24 Score=251.23 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCccC
Q psy12983 628 KRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARG 705 (838)
Q Consensus 628 ~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 705 (838)
.+...+...+.. ..+.++||||+|+..++.+++.|++.|+.+..+||+|++.+|..++++|++|+.+|||||+++++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 344444444443 256799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCC-----CCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHH
Q psy12983 706 LDIPAVDWIVQYDP-----PDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYL 758 (838)
Q Consensus 706 iDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l 758 (838)
+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|+.+.+....+.+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~--~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS--TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC--CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999997 89999999999999995 68999999998776555443
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=209.99 Aligned_cols=156 Identities=24% Similarity=0.433 Sum_probs=139.7
Q ss_pred cccceeeEEEECCchh-HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcC
Q psy12983 613 TVAGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNA 691 (838)
Q Consensus 613 ~~~~l~~~~~~~~~~~-k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g 691 (838)
...++.+.++.++... |...+..+++....+++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567888999988766 999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccCCccCCCCCCccEEEEeCCC------CCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCC
Q psy12983 692 ETGILLCTDVAARGLDIPAVDWIVQYDPP------DDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIP 764 (838)
Q Consensus 692 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~ 764 (838)
+.+|||||+++++|+|+|++++||+||.| .+..+|+||+||+||. |+.|.+++|+.+.+...++.+++. +.+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRF-GKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccC-CCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 9999999999999997 789999999999998888888763 555
Q ss_pred Ccccc
Q psy12983 765 LNEFE 769 (838)
Q Consensus 765 ~~~~~ 769 (838)
++++.
T Consensus 163 ~~~~~ 167 (175)
T 2rb4_A 163 IKQLN 167 (175)
T ss_dssp CEEEC
T ss_pred ccccC
Confidence 55544
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2.2e-23 Score=213.29 Aligned_cols=151 Identities=32% Similarity=0.474 Sum_probs=137.2
Q ss_pred eeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEE
Q psy12983 617 LEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGIL 696 (838)
Q Consensus 617 l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VL 696 (838)
..+.++.++...|...+..++.....+++||||+++++++.+++.|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556778888999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCccc
Q psy12983 697 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEF 768 (838)
Q Consensus 697 VaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~ 768 (838)
|||+++++|+|+|++++||+||.|.+..+|+||+||+||. |+.|.+++|+++.+...++.+++. +..++..
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~-g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 157 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRA-GRGGRVVLLYGPRERRDVEALERAVGRRFKRV 157 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCC-C--BEEEEEECGGGHHHHHHHHHHHSSCCEEC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCC-CCCCeEEEEEchhHHHHHHHHHHHhcCcCeec
Confidence 9999999999999999999999999999999999999997 889999999999999999888763 4444443
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.1e-23 Score=208.24 Aligned_cols=155 Identities=28% Similarity=0.464 Sum_probs=140.3
Q ss_pred ccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCc
Q psy12983 614 VAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAET 693 (838)
Q Consensus 614 ~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~ 693 (838)
..++.++++.++...|...+..+++....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35678889999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC-chHHHHHHHH-cCCCCcccc
Q psy12983 694 GILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE-ELGFLRYLKQ-AKIPLNEFE 769 (838)
Q Consensus 694 ~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~-e~~~~~~l~~-~~~~~~~~~ 769 (838)
+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+. +...++.+++ .+.+++++.
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF-GTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGG-GCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccC-CCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 9999999999999999999999999999999999999999997 8899999999875 5667777765 355555443
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.2e-23 Score=206.58 Aligned_cols=155 Identities=27% Similarity=0.443 Sum_probs=136.7
Q ss_pred ceeeEEEECCchh-HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 616 GLEQGYVVCPSEK-RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 616 ~l~~~~~~~~~~~-k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
++.+.++.++... |...+..+++....+++||||++++.++.+++.|++.++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4677788887776 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH-cCCCCcccccc
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ-AKIPLNEFEFS 771 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~-~~~~~~~~~~~ 771 (838)
|||||+++++|+|+|++++||+||.|.+..+|.||+||+||. |+.|.+++++.+.+...++.+++ .+.+++++...
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF-GRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC-CCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999997 79999999999999988888865 45555555433
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=207.65 Aligned_cols=148 Identities=28% Similarity=0.461 Sum_probs=123.5
Q ss_pred ccccceeeEEEECCchhHHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhc
Q psy12983 612 ATVAGLEQGYVVCPSEKRFLLLFTFLKKN-RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCN 690 (838)
Q Consensus 612 ~~~~~l~~~~~~~~~~~k~~~l~~~l~~~-~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~ 690 (838)
....++.+.++.++...|...+..+++.. ..+++||||++++.++.+++.|+..++.+..+||+|++.+|..++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34567899999999999999999999886 57899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 691 AETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 691 g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+.+...++.+.+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV-GNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCT-TSCEEEEEEECGGGGGGHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCC-CCCcEEEEEEchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 78999999999988776666554
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=1.1e-22 Score=218.27 Aligned_cols=151 Identities=32% Similarity=0.474 Sum_probs=135.8
Q ss_pred eeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEE
Q psy12983 617 LEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGIL 696 (838)
Q Consensus 617 l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VL 696 (838)
+.+.++.++...|...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 46678888999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHHc-CCCCccc
Q psy12983 697 LCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEF 768 (838)
Q Consensus 697 VaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~~-~~~~~~~ 768 (838)
|||+++++|+|+|++++||+||.|.+..+|+||+||+||. |+.|.|++|+++.+...++.+++. +..++..
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~-g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~ 154 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA-GRGGRVVLLYGPRERRDVEALERAVGRRFKRV 154 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTCCCEEC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcC-CCCceEEEEeChHHHHHHHHHHHHhCCcceEe
Confidence 9999999999999999999999999999999999999997 889999999999999998888763 4444433
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=206.88 Aligned_cols=158 Identities=28% Similarity=0.453 Sum_probs=130.2
Q ss_pred CCeEEEecCccccccccceeeEEEECCchhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 599 EPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 599 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
+|..+.+... .....++.+.+..++...|...+..++.... +++||||+++..++.+++.|+..++.+..+||+|++
T Consensus 14 ~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~ 90 (191)
T 2p6n_A 14 GTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 90 (191)
T ss_dssp ----------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCH
T ss_pred CCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 5656655433 2445678888999999999999999988754 589999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCceEEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccC-chHHHHH
Q psy12983 679 MKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPE-ELGFLRY 757 (838)
Q Consensus 679 ~~R~~i~~~F~~g~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~-e~~~~~~ 757 (838)
.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||. |+.|.+++|+.+. +..+++.
T Consensus 91 ~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~-g~~g~~i~l~~~~~~~~~~~~ 169 (191)
T 2p6n_A 91 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS-GNTGIATTFINKACDESVLMD 169 (191)
T ss_dssp HHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC-CCCcEEEEEEcCchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 8899999999875 5555555
Q ss_pred HHH
Q psy12983 758 LKQ 760 (838)
Q Consensus 758 l~~ 760 (838)
+++
T Consensus 170 l~~ 172 (191)
T 2p6n_A 170 LKA 172 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=1.9e-23 Score=206.19 Aligned_cols=144 Identities=28% Similarity=0.460 Sum_probs=133.1
Q ss_pred ceeeEEEECCc-hhHHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCce
Q psy12983 616 GLEQGYVVCPS-EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETG 694 (838)
Q Consensus 616 ~l~~~~~~~~~-~~k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~ 694 (838)
++.+.++.++. ..|...+..+++....+++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 35566777777 78888899999887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccEEEEEeccCchHHHHHHHH
Q psy12983 695 ILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQ 760 (838)
Q Consensus 695 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~l~~~~e~~~~~~l~~ 760 (838)
|||||+++++|+|+|++++||+||.|.+..+|+||+||+||. |+.|.+++++.+.+...++.+++
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~-g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA-GRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999997 88999999999988877777765
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=200.00 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=119.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH-HHHHHHHHh
Q psy12983 414 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ-TFGVLKELM 492 (838)
Q Consensus 414 ~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q-~~~~l~~~~ 492 (838)
.+...|+++|.++++.+++++++++.+|||+|||++|+++++..+...... ..+.+++|++|+++|+.| +.+.++.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 344489999999999999999999999999999999999999877543211 236789999999999999 777888776
Q ss_pred hhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcc-----cccCCceEEEEeCCCcccccCcHHHH-HH
Q psy12983 493 KYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPE-----FLYKNLQCLIIDEADRILDIGFEEDM-KQ 566 (838)
Q Consensus 493 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~-----~~~~~l~lvViDEah~l~~~gf~~~~-~~ 566 (838)
.. +..+..+.|+.........+..+++|+|+||+++.+.+..... ..+.++++||+||||++.+.++...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6677777776654444444445689999999999988876532 44678999999999999876644433 33
Q ss_pred HHHHC-------------CccceEEEEeee
Q psy12983 567 IVNLL-------------PKRRQTMLFSAT 583 (838)
Q Consensus 567 il~~l-------------~~~~qil~lSAT 583 (838)
++... .+..++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 33221 156899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.83 E-value=4.8e-20 Score=214.75 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=65.6
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEE--EccCCccCCCCCC----ccE
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILL--CTDVAARGLDIPA----VDW 713 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLV--aT~~~~~GiDip~----v~~ 713 (838)
...++++||++|...++.+++.+.. .. ...+|.. .+|.+++++|+++. .||+ +|..+++|||+|+ +++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 3567899999999999999988875 23 4556654 56899999999865 5766 8899999999997 899
Q ss_pred EEEeCCCCC-H-----------------------------HHHHHHhcccCcCCCCccEEEE
Q psy12983 714 IVQYDPPDD-P-----------------------------KEYIHRVGRTARGEGSSGHALL 745 (838)
Q Consensus 714 VI~~d~p~s-~-----------------------------~~y~Qr~GRagR~~g~~g~~i~ 745 (838)
||++++|.. + ..+.|.+||+-|.....|..++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 999998831 1 3467999999996344454333
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=8.8e-20 Score=195.09 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=126.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
+|+++|.++++.++++++.++++|||+|||++++.++...+.. ...++||++||++|+.|+.+.++++......
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 7999999999999988889999999999999998888876644 2348999999999999999999998765566
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceE
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQT 577 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qi 577 (838)
.+..+.++..... ....+.+|+|+||+++.+. ....++++++||+||||++.+ ..+..++..++...++
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 187 MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (282)
T ss_dssp GEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEE
T ss_pred eEEEEeCCCcchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeE
Confidence 7777777665432 1124579999999987543 123457889999999999874 4677788888778999
Q ss_pred EEEeeecccchHHHHH
Q psy12983 578 MLFSATTTAKTETLTK 593 (838)
Q Consensus 578 l~lSAT~~~~~~~l~~ 593 (838)
+++|||+++....+..
T Consensus 256 l~lSATp~~~~~~~~~ 271 (282)
T 1rif_A 256 FGLSGSLRDGKANIMQ 271 (282)
T ss_dssp EEECSSCCTTSTTHHH
T ss_pred EEEeCCCCCcchHHHH
Confidence 9999999876544433
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.79 E-value=5.9e-18 Score=197.84 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCCCcHHHHHHHHHH----HcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 415 GFTKMTEIQARTIPPL----LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 415 g~~~~~~~Q~~ai~~i----~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
|| +++|.|.+++..+ ..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------KPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------CSEEEEEESSGGGHHHHHHHHTT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------CCeEEEEcCCHHHHHHHHHHHHH
Confidence 45 7899999987754 468999999999999999999999872 57899999999999999988888
Q ss_pred HhhhcCCeEEEEeCCcc---------------------------------hHHHH------------------HHHhcCC
Q psy12983 491 LMKYHHHTYGLIMGGAS---------------------------------RQAEA------------------QKLAKGI 519 (838)
Q Consensus 491 ~~~~~~~~v~~l~gg~~---------------------------------~~~~~------------------~~l~~~~ 519 (838)
+....++++..+.|..+ ..... +....++
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 76655677766655321 01111 2223468
Q ss_pred cEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccc
Q psy12983 520 NIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD 557 (838)
Q Consensus 520 ~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~ 557 (838)
+|||+|+..|++...+..........++||||||++.+
T Consensus 150 dIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999998775443311224678999999998766
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=179.55 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=125.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHH
Q psy12983 406 NTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTF 485 (838)
Q Consensus 406 ~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~ 485 (838)
.+.+.+.......++++|.++++.+.+|++++++||||||||.++.++++........ ..+.++++++|+++|+.|+.
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHHHH
Confidence 3333333333336799999999999999999999999999999998888887654211 22458999999999999998
Q ss_pred HHHHHHhhh-cCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcc-cccCcH-H
Q psy12983 486 GVLKELMKY-HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRI-LDIGFE-E 562 (838)
Q Consensus 486 ~~l~~~~~~-~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l-~~~gf~-~ 562 (838)
+.+...... .+..++........ ....+++|+|+||+++++++.. .++++++||+||||++ .+.+|. .
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHH
Confidence 888765442 23344332222111 0013478999999999998875 2689999999999985 566665 4
Q ss_pred HHHHHHHHCCccceEEEEeeecccch
Q psy12983 563 DMKQIVNLLPKRRQTMLFSATTTAKT 588 (838)
Q Consensus 563 ~~~~il~~l~~~~qil~lSAT~~~~~ 588 (838)
.++.++... ++.|+++||||++...
T Consensus 198 ~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 198 VLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 556666655 4789999999999754
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.71 E-value=8.4e-17 Score=167.23 Aligned_cols=138 Identities=22% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.++++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~----~~ 158 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGG----CG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhC----CC
Confidence 7999999999999999999999999999999988777642 567999999999999999888772 56
Q ss_pred e-EEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccce
Q psy12983 498 T-YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQ 576 (838)
Q Consensus 498 ~-v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~q 576 (838)
. +..+.|+... ..+|+|+|++.+...... ...++++|||||+|++.+..|. .++..++ ..+
T Consensus 159 ~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~ 220 (237)
T 2fz4_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APF 220 (237)
T ss_dssp GGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSE
T ss_pred CeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc-CCE
Confidence 6 7777766542 469999999998765542 1256899999999999877654 3445444 578
Q ss_pred EEEEeeecccc
Q psy12983 577 TMLFSATTTAK 587 (838)
Q Consensus 577 il~lSAT~~~~ 587 (838)
++++|||+...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999999853
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.67 E-value=2.3e-15 Score=177.34 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=66.5
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~----i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
+|++.|.+.+.. +.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~------~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE------RKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH------HTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh------cCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 689999998865 4578999999999999999999999998754 357899999999999999999998876
Q ss_pred hcCCeEEEEeC
Q psy12983 494 YHHHTYGLIMG 504 (838)
Q Consensus 494 ~~~~~v~~l~g 504 (838)
..++++..+.|
T Consensus 77 ~~~~~~~~l~g 87 (620)
T 4a15_A 77 TMKIRAIPMQG 87 (620)
T ss_dssp HSCCCEEECCC
T ss_pred ccCeEEEEEEC
Confidence 55555554443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.61 E-value=1.6e-15 Score=160.51 Aligned_cols=125 Identities=13% Similarity=0.214 Sum_probs=98.6
Q ss_pred CchhHHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHhhcC-CCCeEEecCCCChhHHHHHHHHHhcC-Cce-EEEEc
Q psy12983 625 PSEKRFLLLFTFLKKN--RKKKVMVFFSSCMSVKFHHELLNYI-DLPVMCIHGKQKQMKRTTTFFQFCNA-ETG-ILLCT 699 (838)
Q Consensus 625 ~~~~k~~~l~~~l~~~--~~~kvIIF~~t~~~~~~l~~~L~~~-~~~v~~lhg~m~~~~R~~i~~~F~~g-~~~-VLVaT 699 (838)
....|...+..++... .+.++||||++...++.++..|.+. |+.+..+||+++..+|..++++|+++ +.+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4457888888888765 6789999999999999999999874 99999999999999999999999998 676 78999
Q ss_pred cCCccCCCCCCccEEEEeCCCCCHHHHHHHhcccCcCCCCccE--EEEEeccC
Q psy12983 700 DVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGH--ALLILRPE 750 (838)
Q Consensus 700 ~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~--~i~l~~~~ 750 (838)
+++++|+|++++++||+||+|+++..|.||+||++|. |+.+. ++.++...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~-Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI-GQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC---------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhcccc-CCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999997 55544 45556554
No 94
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=99.38 E-value=1.7e-13 Score=139.67 Aligned_cols=168 Identities=24% Similarity=0.481 Sum_probs=109.5
Q ss_pred eeccccccccccceEeeccccccccccCcCCCCC--CceEEE--------EE-EeCCh--HHHHHHHHhccCCCEEEEEe
Q psy12983 142 VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE--RRQTML--------FS-ATTTA--KTETLTKLALKKEPVYIGVD 208 (838)
Q Consensus 142 ~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~--~rQtlL--------FS-AT~~~--~v~~la~~~l~~~p~~i~i~ 208 (838)
+|+.|+..+|+++.+.++|||||++-++.++.+. +.-+++ +- .-..+ ++.++++....++..+|-..
T Consensus 20 vLq~gL~~NF~~v~V~VvdCPDL~~~Pf~l~~~GL~G~~~i~dvGG~pyL~P~~~~dK~Ydl~~i~k~~~~p~~f~iGAG 99 (316)
T 1xcr_A 20 VMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAG 99 (316)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTSTTTCCSSSCCBSSCEEEEEECGGGTSSSCBTTCEEEHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHhhhcceeEEEEeeCCCCCCCCccCcccCCCCCCeEEEeCCccccCccccccceecHHHHHHHhCCCCcEEECCC
Confidence 6799999999999999999999999999998653 222221 10 00011 46677666543245444211
Q ss_pred c------------------CCcccccccceEEEEECCcch---------------HHHHHHHH-HhhCCCCCeeeeHHhh
Q psy12983 209 D------------------TKEEATVAGLEQGYVVCPSEK---------------RFLLLFTF-LKKNHIGEIVAWHVLL 254 (838)
Q Consensus 209 ~------------------~~~~~~~~~i~q~~v~v~~~~---------------K~~~L~~l-l~~~~~~~~iVF~~~~ 254 (838)
- +.+.....+ .-++..++..+ ++.+|..+ +++..+++
T Consensus 100 Agp~~~~g~NcEli~n~~~~~~~~~~~N-~s~~a~v~~~~g~~~~e~~~~~~~~~~f~Ll~Nl~~seG~pG~-------- 170 (316)
T 1xcr_A 100 AGPFQTLGFNSEFMPVIQTESEHKPPVN-GSYFAHVNPADGGCLLEKYSEKCHDFQCALLANLFASEGQPGK-------- 170 (316)
T ss_dssp ECCHHHHSSCCEEECEEECCBTTBCCEE-CCEEEEECTTTSCEEEEEHHHHCCSCEEEEEEEEEEECCBCCE--------
T ss_pred cCCCCccCccceEEeeeeecCCCccccc-ceEEEEEecCCCcEEEEeCCCCcccccchhhhhhhccCCCCCC--------
Confidence 1 111000000 11222332211 11112211 11223333
Q ss_pred hhcCCceeEEeeCCCChhhhHHHHHHHHhccCCCcc-cceEEeccCCcccccCCCCCCCCCcchhhh
Q psy12983 255 LQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGL-GGVILIENAPAKHHVMPDFSTTPLETKDQL 320 (838)
Q Consensus 255 l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~s~~p~~~~~~~ 320 (838)
.+.+.|..+.|+++|+++||+.+.+||+.+++|| +|+|+++||+++.|+|||||.+|+.+.++.
T Consensus 171 --VlkV~ak~RtG~~~fv~ciR~~L~~~Yg~~~VgL~GGvFlik~Gkak~HVMpdFs~~Pl~s~e~v 235 (316)
T 1xcr_A 171 --VIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEV 235 (316)
T ss_dssp --EEEEEEEEECSSCCHHHHHHHHHHHHHTTSCCEEEEEEEEEESEEEEEECCSSCCSSCCCSHHHH
T ss_pred --eEEEEeeeecCCccHHHHHHHHHHHHcCcceeeecceEEEEecCcEEEEeCCCCCCCCCCCHHHH
Confidence 5678999999999999999999999999999999 999999999999999999988877665554
No 95
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.16 E-value=4.5e-11 Score=135.42 Aligned_cols=186 Identities=14% Similarity=0.134 Sum_probs=137.7
Q ss_pred CCccCchhhHHHHHHHHH-----------hcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIV-----------AELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||-..-.-|..-+.++. ||...+.+...+...++++++|||+ +++++++.. +.+..++++|
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~------l~~~l~~~~-~~l~~~~~lV 208 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGR------LLDFVDRTF-ITFEDTRFVV 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHH------HHHHHHTTS-CCCTTCCEEE
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHH------HHHHHHhCC-cccccCCeEE
Confidence 355444444555555443 3444444444556788999999999 888887654 4577888888
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccc
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT 215 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~ 215 (838)
|+++||.+++..|...+. .+..+|+++||||+|+++++++..++. ++..+.+. .....
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~-------------~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~--~~~~~ 272 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVT-------------MRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIG--IVGGA 272 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTT-------------SCSSCEEEEEESCCCHHHHHHHHTTCS-SCEEEEES--STTCC
T ss_pred EccHhhhhccCcHHHHHHHHHhcC-------------CCCCceEEEEeccCCHHHHHHHHHhcc-CCEEEEec--ccccc
Confidence 889999998888876651 146799999999999999999999999 99987663 33455
Q ss_pred cccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc
Q psy12983 216 VAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK 284 (838)
Q Consensus 216 ~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~ 284 (838)
..++.|.++.++...|...|..++.....+ +||||++ .|...++.+..+||+++..+ |+...+.+.
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~--R~~~l~~F~ 347 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQ--REQALRDFK 347 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHH--HHHHHHHHH
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHH--HHHHHHHHH
Confidence 677999999999999999999999876654 9999644 45667999999999987653 333444343
No 96
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=114.38 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=113.0
Q ss_pred cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 102 TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
+...++++++||++ +++++.... +.+..+.++| +++.+|...+..+.... .++...
T Consensus 148 ~~~~~~I~v~Tp~~------l~~~l~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~-----------~~~~~~ 209 (417)
T 2i4i_A 148 LERGCHLLVATPGR------LVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD-----------TMPPKG 209 (417)
T ss_dssp HTTCCSEEEECHHH------HHHHHHTTS-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSS-----------SCCCBT
T ss_pred hhCCCCEEEEChHH------HHHHHHcCC-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhc-----------cCCCcC
Confidence 44678899999998 777776543 4566677777 66777777777665532 111123
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhC-CCCCeeeeHHh-
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKN-HIGEIVAWHVL- 253 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~-~~~~~iVF~~~- 253 (838)
.+|+++||||+++.+..++..++. +|..+.+ ........++.|.++.++..+|...+..+++.. ..+++|||+++
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLD-EYIFLAV--GRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 286 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCS-SCEEEEE--C----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEe--CCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 689999999999999999999999 8988655 333456677999999999999999999999876 45689999544
Q ss_pred --------hhhcCCceeEEeeCCCChhh
Q psy12983 254 --------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~~~~~~ 273 (838)
.+...++.+..+||+++.-+
T Consensus 287 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (417)
T 2i4i_A 287 KGADSLEDFLYHEGYACTSIHGDRSQRD 314 (417)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred HHHHHHHHHHHHCCCCeeEecCCCCHHH
Confidence 45667899999999997543
No 97
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.71 E-value=1e-08 Score=114.78 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=126.0
Q ss_pred CCccCchhhHHHHHHHHHh-----------cccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVA-----------ELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||-..-.-|..-+.++.. |..+..+...+...++++++|+++ ++++++.. .+.+..+.++|
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~------l~~~l~~~-~~~~~~~~~vV 184 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGR------VFDMIRRR-SLRTRAIKMLV 184 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH------HHHHHHTT-SSCCTTCCEEE
T ss_pred cCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHH------HHHHHHhC-CccHhheeEEE
Confidence 4554444446655555432 222222223344568899999998 77777654 23455666666
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccc
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT 215 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~ 215 (838)
+++.+|.+.+..+...+ +..+|+++||||+++++.++...++. +|..+.+ ......
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 246 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYL---------------PPATQVVLISATLPHEILEMTNKFMT-DPIRILV--KRDELT 246 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTS---------------CTTCEEEEEESCCCHHHHTTGGGTCS-SCEEECC--CGGGCS
T ss_pred EccHHHHHhhhhHHHHHHHHHhC---------------ccCceEEEEEcCCCHHHHHHHHHHcC-CCEEEEe--cCcccc
Confidence 67777777777666555 67899999999999999999999998 8988543 334456
Q ss_pred cccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 216 VAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 216 ~~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
..++.|.++.++..+ |...|..++.....+++||||++ .+...++.+..+||+++..+
T Consensus 247 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 247 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKE 314 (410)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred CCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHH
Confidence 677999999887654 88999999988777899999644 45667899999999987653
No 98
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.59 E-value=1.5e-08 Score=116.13 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=67.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
...++++++||++ +++++.+...+.+..+.++| +++ .+|...+..+...+ +.
T Consensus 208 ~~~~~Ivv~Tp~~------l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~---------------~~ 266 (479)
T 3fmp_B 208 KISEQIVIGTPGT------VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---------------PR 266 (479)
T ss_dssp CCCCSEEEECHHH------HHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS---------------CT
T ss_pred cCCCCEEEECchH------HHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC---------------Cc
Confidence 4467899999998 89999887777788888887 444 46666665555554 67
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHhh
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVLL 254 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~~ 254 (838)
.+|+++||||++.++..++..++. +|..+.+. ........+.|.++.++. ..|...|..++.....+++||||+++
T Consensus 267 ~~~~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~ 343 (479)
T 3fmp_B 267 NCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLK--REEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTR 343 (479)
T ss_dssp TSEEEEEESCCCHHHHHHHHHHSS-SEEEEEEC-----------------------------------------------
T ss_pred cceEEEEeCCCCHHHHHHHHHHcC-CCeEEecc--ccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcH
Confidence 899999999999999999999998 89886663 344566778999998876 56888888888877778999998665
Q ss_pred h---------hcCCceeEEeeCCCChh
Q psy12983 255 L---------QVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 255 l---------~~~~~~~~~~hg~~~~~ 272 (838)
. ...++.+..+||+++..
T Consensus 344 ~~~~~l~~~L~~~~~~v~~lh~~~~~~ 370 (479)
T 3fmp_B 344 KTASWLAAELSKEGHQVALLSGEMMVE 370 (479)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHhCCccEEEecCCCCHH
Confidence 4 44578999999998654
No 99
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.57 E-value=1.9e-07 Score=104.18 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=114.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
...++++++|+++ +++++.+...+.+..+.++| +++ .++...+..+...+ +.
T Consensus 141 ~~~~~ivv~T~~~------l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~---------------~~ 199 (412)
T 3fht_A 141 KISEQIVIGTPGT------VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---------------PR 199 (412)
T ss_dssp CCCCSEEEECHHH------HHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS---------------CT
T ss_pred cCCCCEEEECchH------HHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC---------------CC
Confidence 4567899999998 88888776666677888777 443 45555555555544 67
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHh-
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~- 253 (838)
..|+++||||++..+..++..++. +|..+.+ .........+.|.++.++. ..|...+..++.....+++|||+++
T Consensus 200 ~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~ 276 (412)
T 3fht_A 200 NCQMLLFSATFEDSVWKFAQKVVP-DPNVIKL--KREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTR 276 (412)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSS-SCEEECC--CGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSH
T ss_pred CceEEEEEeecCHHHHHHHHHhcC-CCeEEee--ccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCH
Confidence 799999999999999999999998 8988544 3444566778999988876 5688889999888788899999644
Q ss_pred --------hhhcCCceeEEeeCCCChhh
Q psy12983 254 --------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~~~~~~ 273 (838)
.+...++.+..+||+++..+
T Consensus 277 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 277 KTASWLAAELSKEGHQVALLSGEMMVEQ 304 (412)
T ss_dssp HHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCHHH
Confidence 44667899999999987643
No 100
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.54 E-value=6.4e-08 Score=108.20 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=112.9
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
..|+++++|+++ +++++.+.. +.+..+.++| +++.+|...+..+...+ ++..
T Consensus 158 ~~~~iiv~T~~~------l~~~l~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~---------------~~~~ 215 (414)
T 3eiq_A 158 EAPHIIVGTPGR------VFDMLNRRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL---------------NSNT 215 (414)
T ss_dssp TCCSEEEECHHH------HHHHHHHTS-SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS---------------CTTC
T ss_pred CCCCEEEECHHH------HHHHHHcCC-cccccCcEEEEECHHHhhccCcHHHHHHHHHhC---------------CCCC
Confidence 678999999998 777765532 3345566665 66667777777766655 6789
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcc-hHHHHHHHHHhhCCCCCeeeeHHh---
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSE-KRFLLLFTFLKKNHIGEIVAWHVL--- 253 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~-~K~~~L~~ll~~~~~~~~iVF~~~--- 253 (838)
|+++||||++..+..+...++. +|..+.+ .........+.|.++.+... .|...+..++.....+++|||+++
T Consensus 216 ~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 292 (414)
T 3eiq_A 216 QVVLLSATMPSDVLEVTKKFMR-DPIRILV--KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 292 (414)
T ss_dssp EEEEECSCCCHHHHHHHTTTCS-SCEEECC--CCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHH
T ss_pred eEEEEEEecCHHHHHHHHHHcC-CCEEEEe--cCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHH
Confidence 9999999999999999999998 8887543 44455667789999988764 489999999998888899999644
Q ss_pred ------hhhcCCceeEEeeCCCChhhhHHHHHHHHhc
Q psy12983 254 ------LLQVIKIKVQTRIGKEDFVTSVRNVLAAHYK 284 (838)
Q Consensus 254 ------~l~~~~~~~~~~hg~~~~~~~~~~~~~~~~~ 284 (838)
.+...++.+..+||+++.. -|+...+.+.
T Consensus 293 ~~~l~~~l~~~~~~~~~~h~~~~~~--~r~~~~~~f~ 327 (414)
T 3eiq_A 293 VDWLTEKMHARDFTVSAMHGDMDQK--ERDVIMREFR 327 (414)
T ss_dssp HHHHHHHHHTTTCCCEEC---CHHH--HHHHHHHHHS
T ss_pred HHHHHHHHHhcCCeEEEecCCCCHH--HHHHHHHHHH
Confidence 4566789999999998653 3444444443
No 101
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.54 E-value=1.6e-07 Score=110.50 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCch--hhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKT--LAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKT--l~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
.++.|+.+++.++.++.+++.|++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 150 ~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999999999999 5566666654311 2456899999999999999888777655443
Q ss_pred CeEEEEeCCcchHHHHHHHhcCCc-EEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccc
Q psy12983 497 HTYGLIMGGASRQAEAQKLAKGIN-IIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575 (838)
Q Consensus 497 ~~v~~l~gg~~~~~~~~~l~~~~~-IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~ 575 (838)
+...... .... . ....+ ++-.+|+.. . +.... .....++++||||++++. ...+..++..++...
T Consensus 225 l~~~~~~-~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~-~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 225 LTDEQKK-RIPE--D----ASTLHRLLGAQPGSQ-R-LRHHA-GNPLHLDVLVVDEASMID----LPMMSRLIDALPDHA 290 (608)
T ss_dssp CCSCCCC-SCSC--C----CBTTTSCC-------------CT-TSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTC
T ss_pred CCHHHHh-ccch--h----hhhhHhhhccCCCch-H-HHhcc-CCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCC
Confidence 2210000 0000 0 00011 111222211 0 11111 112368899999999654 456778888898889
Q ss_pred eEEEEeee
Q psy12983 576 QTMLFSAT 583 (838)
Q Consensus 576 qil~lSAT 583 (838)
|++++.-.
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 99988754
No 102
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.48 E-value=2.4e-07 Score=102.71 Aligned_cols=176 Identities=19% Similarity=0.186 Sum_probs=121.2
Q ss_pred CCccCchhhHHHHHHHHHhc---ccc---------cCCCcccc-cCCCeeeeCCCcccchhhhhhhccCCCCccccccch
Q psy12983 73 VPTLNVPSIWESLLDRIVAE---LTV---------YPPESFTL-SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFC 139 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (838)
+||-..-.-|..-+.++.+. +.+ +.++..+. ..|+++++|+++ +++++.+.. ..+..+.+
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~------l~~~~~~~~-~~~~~~~~ 155 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR------ILALARNKS-LNLKHIKH 155 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHH------HHHHHHTTS-SCCTTCSE
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHH------HHHHHHcCC-ccccccCE
Confidence 45555555576666666432 222 11111122 347889999988 666655432 34556666
Q ss_pred he------eec-cccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCc
Q psy12983 140 PF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKE 212 (838)
Q Consensus 140 lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~ 212 (838)
+| +++ .++...+..+.... +..+|+++||||+++.+..+...++. +|..+.+.. ..
T Consensus 156 vViDEaH~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~-~~ 218 (391)
T 1xti_A 156 FILDECDKMLEQLDMRRDVQEIFRMT---------------PHEKQVMMFSATLSKEIRPVCRKFMQ-DPMEIFVDD-ET 218 (391)
T ss_dssp EEECSHHHHTSSHHHHHHHHHHHHTS---------------CSSSEEEEEESSCCSTHHHHHHHHCS-SCEEEECCC-CC
T ss_pred EEEeCHHHHhhccchHHHHHHHHhhC---------------CCCceEEEEEeeCCHHHHHHHHHHcC-CCeEEEecC-cc
Confidence 65 333 35555555554444 66899999999999999999999998 898865432 22
Q ss_pred ccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHH---------hhhhcCCceeEEeeCCCChh
Q psy12983 213 EATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHV---------LLLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 213 ~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~---------~~l~~~~~~~~~~hg~~~~~ 272 (838)
......+.++++.++..+|...+..++.....+++|||++ ..+...++.+..+||+++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 287 (391)
T 1xti_A 219 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 287 (391)
T ss_dssp CCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred ccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 3345678999999999999999999999888889999954 34566789999999998654
No 103
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.40 E-value=9.6e-08 Score=102.36 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=73.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
...|+++++|||+ +++++.+...+.+..++++| |++ .||.+.+..|...+ |+
T Consensus 208 ~~~~~IlV~TP~~------l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~---------------~~ 266 (300)
T 3fmo_B 208 KISEQIVIGTPGT------VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML---------------PR 266 (300)
T ss_dssp CCCCSEEEECHHH------HHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS---------------CT
T ss_pred cCCCCEEEECHHH------HHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC---------------CC
Confidence 5678999999999 99999887777889999988 776 68888888777666 77
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
.+|+++||||++.++..+++.+++ +|..|.+
T Consensus 267 ~~q~i~~SAT~~~~v~~~a~~~l~-~p~~i~~ 297 (300)
T 3fmo_B 267 NCQMLLFSATFEDSVWKFAQKVVP-DPNVIKL 297 (300)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSS-SCEEEEE
T ss_pred CCEEEEEeccCCHHHHHHHHHHCC-CCeEEEe
Confidence 899999999999999999999999 9999776
No 104
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.39 E-value=1.1e-07 Score=111.60 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=107.4
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
..|+++++||++ +++|++......+..+.++| ++++||.++++.+...+.... .. .+..+
T Consensus 149 ~~~~IlV~Tp~~------l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~------~~--~~~~~ 214 (579)
T 3sqw_A 149 LRPNIVIATPGR------LIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN------SK--SADNI 214 (579)
T ss_dssp HCCSEEEECHHH------HHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC------SS--CTTCC
T ss_pred CCCCEEEECHHH------HHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhh------cc--cccCc
Confidence 368999999998 88887665444566777777 889999999988877762110 00 13468
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEEEEecC--CcccccccceEEEEECCcc-h-HHHHH---HHHHhh-CCCCCeee
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYIGVDDT--KEEATVAGLEQGYVVCPSE-K-RFLLL---FTFLKK-NHIGEIVA 249 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~--~~~~~~~~i~q~~v~v~~~-~-K~~~L---~~ll~~-~~~~~~iV 249 (838)
|+++||||+++.+.+++..++. +|..+.+... ........+.|.++.++.. . +...+ ...+.. ....++||
T Consensus 215 ~~l~~SAT~~~~v~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 215 KTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp EEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEeccCChHHHHHHHHHcC-CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 9999999999999999999998 8876555322 2234455688888887653 2 22333 233332 45678999
Q ss_pred eHHhh---------hhcC---CceeEEeeCCCChhh
Q psy12983 250 WHVLL---------LQVI---KIKVQTRIGKEDFVT 273 (838)
Q Consensus 250 F~~~~---------l~~~---~~~~~~~hg~~~~~~ 273 (838)
||++. |... ++.+..+||+++.-+
T Consensus 294 F~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 96543 3333 889999999987654
No 105
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.32 E-value=1.7e-07 Score=109.62 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=106.9
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
...|+++++||++ +++++.+.....++.+.++| ++++||..+++.+...+.... . ..+..
T Consensus 199 ~~~~~Iiv~Tp~~------l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~------~--~~~~~ 264 (563)
T 3i5x_A 199 KLRPNIVIATPGR------LIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN------S--KSADN 264 (563)
T ss_dssp HHCCSEEEECHHH------HHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC------S--SCTTC
T ss_pred cCCCCEEEECcHH------HHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcc------c--cCccC
Confidence 3478999999998 88887665444566777777 888999999888877662110 0 01346
Q ss_pred ceEEEEEEeCChHHHHHHHHhccCCCEEEEEecC--CcccccccceEEEEECCcc-hHH-HHHH---HHHhh-CCCCCee
Q psy12983 177 RQTMLFSATTTAKTETLTKLALKKEPVYIGVDDT--KEEATVAGLEQGYVVCPSE-KRF-LLLF---TFLKK-NHIGEIV 248 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~--~~~~~~~~i~q~~v~v~~~-~K~-~~L~---~ll~~-~~~~~~i 248 (838)
.|+++||||+++.+.+++..++. ++..+.+... ........+.|.++.++.. .+. ..+. ..+.. ...+++|
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 343 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEE
Confidence 89999999999999999999998 7766544322 2233455688888877653 222 2222 22332 5567899
Q ss_pred eeHHhh---------hhcC---CceeEEeeCCCChhh
Q psy12983 249 AWHVLL---------LQVI---KIKVQTRIGKEDFVT 273 (838)
Q Consensus 249 VF~~~~---------l~~~---~~~~~~~hg~~~~~~ 273 (838)
|||++. +... ++.+..+||+++..+
T Consensus 344 VF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 996543 3333 899999999987654
No 106
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.32 E-value=1e-06 Score=98.06 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=119.5
Q ss_pred CCccCchhhHHHHHHHHHhcccccC-----------CCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTVYP-----------PESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+|+-..-.-|..-+.++...+.+.. +..-+..++++++.|+++ +++++.+.. ..+..+.++|
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~------l~~~~~~~~-~~~~~~~~vI 168 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGR------VLDLASRKV-ADLSDCSLFI 168 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHH------HHHHHHTTC-SCCTTCCEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHH------HHHHHHhCC-cccccCCEEE
Confidence 4554444456655655544332211 111233577888999887 666654432 2345555555
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccc
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEAT 215 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~ 215 (838)
+++.+|...++.+...+ +...|.++||||++..+..+...++. +|..+.+. ....
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~---------------~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~---~~~~ 229 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFL---------------PPTHQSLLFSATFPLTVKEFMVKHLH-KPYEINLM---EELT 229 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTS---------------CSSCEEEEEESCCCHHHHHHHHHHCS-SCEEESCC---SSCB
T ss_pred EeCchHhhhhchHHHHHHHHHhC---------------CcCceEEEEEecCCHHHHHHHHHHcC-CCeEEEec---cccc
Confidence 44445555555554444 56789999999999999999998888 88775432 2245
Q ss_pred cccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 216 VAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 216 ~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
..++.+++..++...|...+..++.....+++|||+++ .+...++.+..+||+++..+
T Consensus 230 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 296 (400)
T 1s2m_A 230 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQE 296 (400)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHH
T ss_pred cCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHH
Confidence 56789999999999999999999998888899999644 34566899999999987654
No 107
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.29 E-value=3e-06 Score=93.62 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=119.4
Q ss_pred CCccCchhhHHHHHHHHHhccccc-------CCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe----
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTVY-------PPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF---- 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv---- 141 (838)
+|+-..-.-|..-+.++.....+. ..+.....+++++++|+++ +++++.+.. ..+..+.++|
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~------l~~~~~~~~-~~~~~~~~iIiDEa 154 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGT------VLDLMRRKL-MQLQKIKIFVLDEA 154 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHH------HHHHHHTTC-BCCTTCCEEEEETH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHH------HHHHHHcCC-cccccCCEEEEECh
Confidence 455544444666555543222211 1222334478899999988 777765532 3355566555
Q ss_pred --eec-cccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCccccccc
Q psy12983 142 --VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAG 218 (838)
Q Consensus 142 --~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~ 218 (838)
+++ .++...+..+...+ +...|+++||||+++.+..++..++. ++..+.+ .........
T Consensus 155 h~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 216 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFL---------------PKDTQLVLFSATFADAVRQYAKKIVP-NANTLEL--QTNEVNVDA 216 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTS---------------CTTCEEEEEESCCCHHHHHHHHHHSC-SCEEECC--CGGGCSCTT
T ss_pred hhhcCccccHHHHHHHHHhC---------------CCCcEEEEEEecCCHHHHHHHHHhCC-CCeEEEc--ccccccccc
Confidence 333 45555555555444 67799999999999999999999998 8877544 334455567
Q ss_pred ceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChh
Q psy12983 219 LEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 219 i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~ 272 (838)
+.+.+..+.. ..|...+..++.....+++|||+++ .++..++.+..+||+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 217 IKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQ 280 (395)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred ccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHH
Confidence 8888888855 6788888888888888899999544 4566789999999998754
No 108
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.19 E-value=2.7e-07 Score=95.48 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=83.7
Q ss_pred CCccCchhhHHHHHHHHH-----------hcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIV-----------AELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||-..-.-|...+.++. ||.....+...+...|+++++||++ +++++.+.. ..+..++++|
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~------l~~~l~~~~-~~~~~~~~lV 181 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR------LIDFLECGK-TNLRRTTYLV 181 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH------HHHHHHHTS-CCCTTCCEEE
T ss_pred eCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH------HHHHHHcCC-CCcccccEEE
Confidence 455544444555555543 3433333444455678999999999 777775543 3567777777
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEe
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 208 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~ 208 (838)
+++.||..+++.+...+ ++.+|+++||||+|++++++++.+++ +|+.|.+.
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~---------------~~~~q~~~~SAT~~~~~~~~~~~~l~-~~~~i~~~ 238 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIG 238 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTS---------------CSSCEEEEEESCCCHHHHHHHHHHCS-SCEEEEEC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhC---------------CccceEEEEEeecCHHHHHHHHHHCC-CCEEEEec
Confidence 78889998888887777 67899999999999999999999999 99997763
No 109
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.16 E-value=5.3e-07 Score=93.90 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=79.9
Q ss_pred CCccCchhhHHHHHHHHHh-----------cccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVA-----------ELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||-..-.-|..-+.++.. |.+...+..-+...++++++||++ +++++++.. ..+..+.++|
T Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~------l~~~l~~~~-~~~~~~~~lV 179 (253)
T 1wrb_A 107 APTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR------LVDFIEKNK-ISLEFCKYIV 179 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHH------HHHHHHTTS-BCCTTCCEEE
T ss_pred ECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHH------HHHHHHcCC-CChhhCCEEE
Confidence 4554444556655555433 222222222334678999999998 777776543 3466777777
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCC--CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcc
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE--RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEE 213 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~--~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~ 213 (838)
+++.||.+++..+...+ .+ |. .+|+++||||++++++++++.+++ +|..|.+ +...
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~-----------~~--~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~--~~~~ 243 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEES-----------NM--PSGINRQTLMFSATFPKEIQKLAADFLY-NYIFMTV--GRVG 243 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSS-----------CC--CCGGGCEEEEEESSCCHHHHHHHHHHCS-SCEEEEE--C---
T ss_pred EeCHHHHHhCchHHHHHHHHhhc-----------cC--CCCCCcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEE--CCCC
Confidence 77888888888877643 01 33 789999999999999999999999 9999766 3444
Q ss_pred cccccceEEE
Q psy12983 214 ATVAGLEQGY 223 (838)
Q Consensus 214 ~~~~~i~q~~ 223 (838)
...++|+|++
T Consensus 244 ~~~~~i~q~~ 253 (253)
T 1wrb_A 244 STSDSIKQEI 253 (253)
T ss_dssp ----------
T ss_pred CCcCCceecC
Confidence 5667788864
No 110
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.16 E-value=3.4e-07 Score=95.27 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=83.8
Q ss_pred CCccCchhhHHHHHHHHHhcc-----------cccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVAEL-----------TVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||-..-.-|..-+.++..++ +...++..+...++++++|+++ +++++++...+.+..+.++|
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~------l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGR------LIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHH------HHHHHHHSTTCCCTTCCEEE
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHH------HHHHHHcCCCcCccccCEEE
Confidence 455544444655555553322 2222333345688999999999 88888776666677888777
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
+++.+|..++..+...+ ++.+|+++||||++.+++++++.+++ +|+.|.+
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~---------------~~~~~~l~~SAT~~~~v~~~~~~~l~-~p~~i~v 247 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVI---------------PRDRKTFLFSATMTKKVQKLQRAALK-NPVKCAV 247 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSS---------------CSSSEEEEEESSCCHHHHHHHHHHCS-SCEEEEC
T ss_pred EcChhhhhccChHHHHHHHHHhC---------------CCCCeEEEEeccCCHHHHHHHHHHCC-CCEEEEe
Confidence 77788888888887766 67899999999999999999999999 9998654
No 111
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.11 E-value=7.5e-07 Score=98.65 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCccCchhhHHHHHHHHHhcccccCCC----------cccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe-
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTVYPPE----------SFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF- 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv- 141 (838)
+|+-..-.-|...+.++..++.+++.. .-.+..++++++|+++ +++++.+.. +.+..+.++|
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~------l~~~~~~~~-~~~~~~~~vIi 168 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGR------VFDNIQRRR-FRTDKIKMFIL 168 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHH------HHHHHHTTS-SCCTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHH------HHHHHHhCC-cchhhCcEEEE
Confidence 455444444666666665444332210 0012257788888887 666665432 3345566565
Q ss_pred -----eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCccccc
Q psy12983 142 -----VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATV 216 (838)
Q Consensus 142 -----~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~ 216 (838)
+++.+|...+..+...+ +...|++++|||++..+.++...++. +|..+.+. ......
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ 230 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLL---------------PPTTQVVLLSATMPNDVLEVTTKFMR-NPVRILVK--KDELTL 230 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHS---------------CTTCEEEEECSSCCHHHHHHHHHHCC-SCEEEEEC--C-----
T ss_pred EChHHhhCCCcHHHHHHHHHhC---------------CCCceEEEEEEecCHHHHHHHHHhcC-CCeEEEec--CccccC
Confidence 55666776666666555 66799999999999999999999998 89886553 334455
Q ss_pred ccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHHhhh---------hcCCceeEEeeCCCChh
Q psy12983 217 AGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHVLLL---------QVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 217 ~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~~~l---------~~~~~~~~~~hg~~~~~ 272 (838)
.++.++++.++..+ |...+..++.....+++|||+++.. +..++.+..+||+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 296 (394)
T 1fuu_A 231 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQ 296 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHH
Confidence 67888888777654 8888888888777789999976643 45577899999987644
No 112
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.10 E-value=4.3e-06 Score=91.37 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=125.6
Q ss_pred ccceeec----ccccccCCCCC--CCCCccCchhhHHHHHHHHHhcccccCC-----Cc-----ccccCCCeeeeCCCcc
Q psy12983 53 KGKTYQI----GDKIQAEPGPK--LPVPTLNVPSIWESLLDRIVAELTVYPP-----ES-----FTLSNPSKLTHNDGQS 116 (838)
Q Consensus 53 ~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~ 116 (838)
-|||... -..+...+|++ .-+|+...-.-|..-+.+..+...+.+. .. -...++++++.|+++
T Consensus 55 sGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~- 133 (367)
T 1hv8_A 55 SGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGR- 133 (367)
T ss_dssp SSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHH-
T ss_pred ChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHH-
Confidence 3677552 22233334443 2346555555577666666554332211 00 122368888888887
Q ss_pred cchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHH
Q psy12983 117 HLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKT 190 (838)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v 190 (838)
+++++.... ..+..+.++| +.+.+|...+..+...+ +...|.+++|||++.++
T Consensus 134 -----l~~~~~~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~SAT~~~~~ 192 (367)
T 1hv8_A 134 -----ILDHINRGT-LNLKNVKYFILDEADEMLNMGFIKDVEKILNAC---------------NKDKRILLFSATMPREI 192 (367)
T ss_dssp -----HHHHHHTTC-SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS---------------CSSCEEEEECSSCCHHH
T ss_pred -----HHHHHHcCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhC---------------CCCceEEEEeeccCHHH
Confidence 666665432 3345556555 55556666665555444 56789999999999999
Q ss_pred HHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHH---------hhhhcCCce
Q psy12983 191 ETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHV---------LLLQVIKIK 261 (838)
Q Consensus 191 ~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~---------~~l~~~~~~ 261 (838)
.++...++. ++..+.. ....++.+.++.+...+|...+..++. ....++|||++ ..+...++.
T Consensus 193 ~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 264 (367)
T 1hv8_A 193 LNLAKKYMG-DYSFIKA------KINANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFK 264 (367)
T ss_dssp HHHHHHHCC-SEEEEEC------CSSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC-CCeEEEe------cCCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 999999988 7776433 123468899999999999999988887 35568999954 345667899
Q ss_pred eEEeeCCCChhh
Q psy12983 262 VQTRIGKEDFVT 273 (838)
Q Consensus 262 ~~~~hg~~~~~~ 273 (838)
+..+||+++..+
T Consensus 265 ~~~~~~~~~~~~ 276 (367)
T 1hv8_A 265 AGAIHGDLSQSQ 276 (367)
T ss_dssp EEEECSSSCHHH
T ss_pred eEEeeCCCCHHH
Confidence 999999987543
No 113
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.99 E-value=4.3e-07 Score=95.24 Aligned_cols=82 Identities=35% Similarity=0.541 Sum_probs=70.0
Q ss_pred cccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCC
Q psy12983 102 TLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
+...++++++|||+ +++++++.+.+.+..+.++| +++.||..+++.+...+ |.
T Consensus 173 ~~~~~~Iiv~Tp~~------l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~---------------~~ 231 (262)
T 3ly5_A 173 LGNGINIIVATPGR------LLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL---------------PT 231 (262)
T ss_dssp HHHCCSEEEECHHH------HHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS---------------CS
T ss_pred hcCCCCEEEEcHHH------HHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC---------------CC
Confidence 33568999999999 89998887777788888887 78889999998888777 77
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEE
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVY 204 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~ 204 (838)
.+|+++||||+|++++++++.++++++.+
T Consensus 232 ~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 232 RRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp SSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred CCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 89999999999999999999999844554
No 114
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.92 E-value=4.4e-07 Score=107.49 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=38.3
Q ss_pred EEECCcchHHHHHHHHHhh--CCCCCeeeeH---------HhhhhcCCceeEEeeCCCChhh
Q psy12983 223 YVVCPSEKRFLLLFTFLKK--NHIGEIVAWH---------VLLLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 223 ~v~v~~~~K~~~L~~ll~~--~~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~~~~ 273 (838)
++.+..++|+..|...+.. ....++|||+ +..|...|+++..+||++...+
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 5566778899888887764 2456799995 4456778999999999975443
No 115
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.92 E-value=2.1e-06 Score=88.30 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=82.3
Q ss_pred CCCccCchhhHHHHHHHHHhcccccC----------CCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 72 PVPTLNVPSIWESLLDRIVAELTVYP----------PESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
-+||-..-.-|..-+.++.....+.. .+.-.+..++++++|+++ +++++.....+.+..+.++|
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~------l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGR------LLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHH------HHHHHHHCSSCCCTTCCEEE
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHH------HHHHHHhcCCcccccccEEE
Confidence 34665555556666666543322111 011123578999999998 77887665556667777777
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
+++.||...+..+...+ |+.+|+++||||++++++++++.+++ +|..|.+
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~---------------~~~~~~l~~SAT~~~~~~~~~~~~~~-~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENL---------------PKKRQTLLFSATQTKSVKDLARLSLK-NPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTS---------------CTTSEEEEEESSCCHHHHHHHHHSCS-SCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhC---------------CCCCeEEEEEeeCCHHHHHHHHHhCC-CCEEEEe
Confidence 77888888888777776 77899999999999999999999999 9998765
No 116
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.92 E-value=2.5e-06 Score=87.84 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCccCchhhHHHHHHHHH-----------hcccccCCCcccccC-CCeeeeCCCcccchhhhhhhccCCCCccccccchh
Q psy12983 73 VPTLNVPSIWESLLDRIV-----------AELTVYPPESFTLSN-PSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCP 140 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 140 (838)
+||-..-.-|...+.++. ||.+.+.+..-+... |+++++||++ +++++.+.. +.+..+.++
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~------l~~~l~~~~-~~~~~~~~l 177 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR------VFDMLNRRY-LSPKWIKMF 177 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHH------HHHHHHTTS-SCSTTCCEE
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHH------HHHHHHhCC-cCcccCcEE
Confidence 455544445655555543 333333333333333 8999999998 777775532 345667777
Q ss_pred e------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 141 F------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 141 v------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
| +++.||...+..+...+ +..+|+++||||+|+++.++++.+++ +|+.|.+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~l~-~p~~i~v 234 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKL---------------NTSIQVVLLSATMPTDVLEVTKKFMR-DPIRILV 234 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHS---------------CTTCEEEEECSSCCHHHHHHHHHHCS-SCEEEC-
T ss_pred EECCchHhhccCcHHHHHHHHHhC---------------CCCCeEEEEEEecCHHHHHHHHHHCC-CCEEEEe
Confidence 6 66778888777776666 67899999999999999999999999 9998654
No 117
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.92 E-value=5.3e-06 Score=85.70 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=82.0
Q ss_pred CCccCchhhHHHHHHHHHhccccc------------CCCcccccCCCeeeeCCCcccchhhhhhhccCCC-Cccccccch
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTVY------------PPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATP-LLVSVSIFC 139 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 139 (838)
+||-..-.-|..-+.++..+..+. ..+......|+++++||++ +++++++.. .+.+..+.+
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~------l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 105 SPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR------LIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHH------HHHHHHSSSCSCCCTTCCE
T ss_pred eCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHH------HHHHHHhCCCCcccccCcE
Confidence 466555555666666654433222 1234456788999999999 888887654 456778888
Q ss_pred he------eec---cccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEe
Q psy12983 140 PF------VLN---QGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 208 (838)
Q Consensus 140 lv------~l~---~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~ 208 (838)
+| +++ .||.+.+..+...+ .+.+.|+++||||+|++++++++.+++ +|+.|.+.
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~--------------~~~~~~~~~~SAT~~~~v~~~~~~~l~-~p~~i~~~ 241 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLAC--------------TSHKVRRAMFSATFAYDVEQWCKLNLD-NVISVSIG 241 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHC--------------CCTTCEEEEEESSCCHHHHHHHHHHSS-SCEEEEEC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhc--------------CCCCcEEEEEeccCCHHHHHHHHHhCC-CCEEEEeC
Confidence 77 556 56777777665444 145789999999999999999999999 99997763
No 118
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.89 E-value=1.9e-06 Score=88.08 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=77.6
Q ss_pred CCccCchhhHHHHHHHH----------HhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe-
Q psy12983 73 VPTLNVPSIWESLLDRI----------VAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF- 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv- 141 (838)
+||-..-.-|..-+.++ .||.....+..-+...|+++++||++ +++++.... ..+..+.++|
T Consensus 101 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~------l~~~~~~~~-~~~~~~~~lVi 173 (228)
T 3iuy_A 101 TPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGR------LNDLQMNNS-VNLRSITYLVI 173 (228)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHH------HHHHHHTTC-CCCTTCCEEEE
T ss_pred eCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHH------HHHHHHcCC-cCcccceEEEE
Confidence 35544433455555553 23444444444555678999999998 777665532 3566777777
Q ss_pred -----eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEE
Q psy12983 142 -----VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIG 206 (838)
Q Consensus 142 -----~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~ 206 (838)
+++.||..++..+...+ +.++|+++||||+|++++++++.+++ +|+.|.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~---------------~~~~~~l~~SAT~~~~~~~~~~~~l~-~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDV---------------RPDRQTVMTSATWPDTVRQLALSYLK-DPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHS---------------CSSCEEEEEESCCCHHHHHHHHTTCS-SCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhC---------------CcCCeEEEEEeeCCHHHHHHHHHHCC-CCEEEe
Confidence 77888888888887776 67899999999999999999999999 998853
No 119
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.89 E-value=3.7e-06 Score=85.35 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcC
Q psy12983 98 PESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNL 171 (838)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l 171 (838)
+...+...|+++++|+++ +++++++.. +.+..+.++| +++.||..++..+...+
T Consensus 119 ~~~~~~~~~~Iiv~Tp~~------l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~------------- 178 (219)
T 1q0u_A 119 ALEKLNVQPHIVIGTPGR------INDFIREQA-LDVHTAHILVVDEADLMLDMGFITDVDQIAARM------------- 178 (219)
T ss_dssp TTCCCSSCCSEEEECHHH------HHHHHHTTC-CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS-------------
T ss_pred HHHHcCCCCCEEEeCHHH------HHHHHHcCC-CCcCcceEEEEcCchHHhhhChHHHHHHHHHhC-------------
Confidence 333445688999999998 777776532 4566777777 67778887777777666
Q ss_pred CCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 172 TSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 172 ~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
++.+|+++||||+|+++.++++.+++ +|..|.+
T Consensus 179 --~~~~~~l~~SAT~~~~~~~~~~~~~~-~p~~~~~ 211 (219)
T 1q0u_A 179 --PKDLQMLVFSATIPEKLKPFLKKYME-NPTFVHV 211 (219)
T ss_dssp --CTTCEEEEEESCCCGGGHHHHHHHCS-SCEEEEC
T ss_pred --CcccEEEEEecCCCHHHHHHHHHHcC-CCeEEEe
Confidence 67899999999999999999999999 9998655
No 120
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.85 E-value=1.1e-06 Score=109.64 Aligned_cols=169 Identities=11% Similarity=-0.007 Sum_probs=103.4
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe----------------eec-cccccc-cccceEeecccccccc
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF----------------VLN-QGLGKY-FKEVSVSFTECPNLTS 166 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv----------------~l~-~g~~~~-~~~i~~~~~d~~dl~~ 166 (838)
.|+++++|||+ +++|++. +.+..+.++| ||+ +||.++ ++.+...+-.. .
T Consensus 174 ~~~IlV~Tp~r------L~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~----~ 240 (1104)
T 4ddu_A 174 DYHILVFSTQF------VSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG----K 240 (1104)
T ss_dssp CCSEEEEEHHH------HHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT----S
T ss_pred CCCEEEECHHH------HHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccc----h
Confidence 48999999998 7777653 3445666665 234 788887 77776655100 0
Q ss_pred ccCcCCCCCCceEEEEEEe-CChHHHH-HHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCC
Q psy12983 167 HPFNLTSAERRQTMLFSAT-TTAKTET-LTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHI 244 (838)
Q Consensus 167 i~~~l~~p~~rQtlLFSAT-~~~~v~~-la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~ 244 (838)
....++.+..+|+++|||| .|..+.. +....+. +..........++.|.++.++ |...|..+++.. .
T Consensus 241 ~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-------i~v~~~~~~~~~i~~~~~~~~---k~~~L~~ll~~~-~ 309 (1104)
T 4ddu_A 241 IYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-------FTVGRLVSVARNITHVRISSR---SKEKLVELLEIF-R 309 (1104)
T ss_dssp CCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-------CCCCBCCCCCCCEEEEEESCC---CHHHHHHHHHHH-C
T ss_pred hhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-------EEeccCCCCcCCceeEEEecC---HHHHHHHHHHhc-C
Confidence 1111221267999999999 6777653 3333332 222334456677999998773 555566777663 4
Q ss_pred CCeeeeHHh---------hhhcCCceeE-EeeCCCChhhhHHHHHHHHhccCCCcccc----eEEeccCCcccc
Q psy12983 245 GEIVAWHVL---------LLQVIKIKVQ-TRIGKEDFVTSVRNVLAAHYKDQPVGLGG----VILIENAPAKHH 304 (838)
Q Consensus 245 ~~~iVF~~~---------~l~~~~~~~~-~~hg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 304 (838)
+++||||++ .|...++.+. .+||+ |+.+...-.++.--+.. +.+.+-|.+..+
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-------rr~l~~F~~G~~~VLVatas~TdvlarGIDip~ 376 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-------EKNFEDFKVGKINILIGVQAYYGKLTRGVDLPE 376 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-------HHHHHHHHHTSCSEEEEETTTHHHHCCSCCCTT
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-------HHHHHHHHCCCCCEEEEecCCCCeeEecCcCCC
Confidence 789999643 4567799998 99994 33333333344444555 455555554433
No 121
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=5.7e-05 Score=85.74 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=80.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHcC-----CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHH
Q psy12983 412 ADMGFTKMTEIQARTIPPLLEG-----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFG 486 (838)
Q Consensus 412 ~~~g~~~~~~~Q~~ai~~i~~~-----~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~ 486 (838)
.-+.|..+++-|++++..++.. ..+++.|+.|+|||.+. ..++..+.. .....+++++||...+..+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~-----~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS-----TGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH-----TTCCCEEEEESSHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh-----cCCceEEEecCcHHHHHHHHh
Confidence 3467889999999999977542 48999999999999764 334444433 222479999999988776554
Q ss_pred HHHHHhhhcCCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHH
Q psy12983 487 VLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQ 566 (838)
Q Consensus 487 ~l~~~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~ 566 (838)
.+ +.....++ ..+..... ...... .+.......+...+++||||+|.+. ...+..
T Consensus 93 ~~-------~~~~~T~h---------~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~ 147 (459)
T 3upu_A 93 LS-------GKEASTIH---------SILKINPV-TYEENV----LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKI 147 (459)
T ss_dssp HH-------SSCEEEHH---------HHHTEEEE-ECSSCE----EEEECSCCCCSSCSEEEESCGGGCC----HHHHHH
T ss_pred hh-------ccchhhHH---------HHhccCcc-cccccc----hhcccccccccCCCEEEEECchhCC----HHHHHH
Confidence 33 11111000 00000000 000000 0000111234568999999999864 245556
Q ss_pred HHHHCCccceEEEEee
Q psy12983 567 IVNLLPKRRQTMLFSA 582 (838)
Q Consensus 567 il~~l~~~~qil~lSA 582 (838)
++..++...+++++.-
T Consensus 148 l~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 148 LLSTIPPWCTIIGIGD 163 (459)
T ss_dssp HHHHSCTTCEEEEEEC
T ss_pred HHHhccCCCEEEEECC
Confidence 6666666666666553
No 122
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.82 E-value=2.2e-05 Score=90.47 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
.++++++|+++ +++++.... +.+..+.++| +.+ .++...+..+...+ +...
T Consensus 235 ~~~Ivv~T~~~------l~~~l~~~~-~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~---------------~~~~ 292 (508)
T 3fho_A 235 DAQIVIGTPGT------VMDLMKRRQ-LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL---------------PRNT 292 (508)
T ss_dssp CCSEEEECHHH------HHHHHHTTC-SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHS---------------CTTC
T ss_pred CCCEEEECHHH------HHHHHHcCC-ccccCCCEEEEechhhhcccCCcHHHHHHHHHhC---------------CcCC
Confidence 67888888887 666654432 2345555555 222 34544455554444 5678
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHh---
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVL--- 253 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~--- 253 (838)
|++++|||+++.+..+...++. ++..+.+ .........+.+.++.+.. ..|...+..++.....+++||||++
T Consensus 293 ~~i~lSAT~~~~~~~~~~~~~~-~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~ 369 (508)
T 3fho_A 293 QIVLFSATFSERVEKYAERFAP-NANEIRL--KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDT 369 (508)
T ss_dssp EEEEEESCCSTHHHHHHHHHST-TCEEECC--CCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTT
T ss_pred eEEEEeCCCCHHHHHHHHHhcC-CCeEEEe--ccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHH
Confidence 9999999999999999999998 8887544 3344555668888888754 5688888888888888899999654
Q ss_pred ------hhhcCCceeEEeeCCCChh
Q psy12983 254 ------LLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 254 ------~l~~~~~~~~~~hg~~~~~ 272 (838)
.+...++.+..+||+++..
T Consensus 370 a~~l~~~L~~~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 370 AEEIARRMTADGHTVACLTGNLEGA 394 (508)
T ss_dssp TTHHHHHHTTTTCCCCEEC-----C
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 4466788999999988654
No 123
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.81 E-value=2.8e-06 Score=100.40 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=37.6
Q ss_pred EEECCcchHHHHHHHHHhh--CCCCCeeeeH---------HhhhhcCCceeEEeeCCCC
Q psy12983 223 YVVCPSEKRFLLLFTFLKK--NHIGEIVAWH---------VLLLQVIKIKVQTRIGKED 270 (838)
Q Consensus 223 ~v~v~~~~K~~~L~~ll~~--~~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~ 270 (838)
++.++.++|+..+...+.. ....++|||+ +..|...|+++..|||+..
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~ 476 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFH 476 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCH
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 4567778899999888754 3456899995 4456788999999999964
No 124
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.78 E-value=0.00017 Score=85.05 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+..-.+.. +.. ..+.++++++||...+.++.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~-l~~-----~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH-LAR-----QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHH-HHT-----SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHH-HHH-----cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34789999999999888888999999999999875444333 322 2467899999999999998877765
No 125
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.76 E-value=8.2e-05 Score=86.52 Aligned_cols=123 Identities=23% Similarity=0.259 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHH 497 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~ 497 (838)
.+++.|.+++..+..++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+. .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e~~~-------~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES------LGLEVGLCAPTGKAARRLGEVTG-------R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHT-------S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh------cCCeEEEecCcHHHHHHhHhhhc-------c
Confidence 789999999999999999999999999999763 333333332 46789999999988876654321 1
Q ss_pred eEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHH----HhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCc
Q psy12983 498 TYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDH----LQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573 (838)
Q Consensus 498 ~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~----l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~ 573 (838)
. ..|..+++.. +... .......++|||||++++.. ..+..++..++.
T Consensus 255 ~------------------------a~Tih~ll~~~~~~~~~~-~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 255 T------------------------ASTVHRLLGYGPQGFRHN-HLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPP 305 (574)
T ss_dssp C------------------------EEEHHHHTTEETTEESCS-SSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCT
T ss_pred c------------------------HHHHHHHHcCCcchhhhh-hcccccCCEEEEcCccCCCH----HHHHHHHHhCcC
Confidence 1 1111111100 0011 11223578999999998743 456667777777
Q ss_pred cceEEEEeee
Q psy12983 574 RRQTMLFSAT 583 (838)
Q Consensus 574 ~~qil~lSAT 583 (838)
..+++++.-.
T Consensus 306 ~~~lilvGD~ 315 (574)
T 3e1s_A 306 GARVLLVGDT 315 (574)
T ss_dssp TCEEEEEECT
T ss_pred CCEEEEEecc
Confidence 7777776543
No 126
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.72 E-value=8.2e-05 Score=80.08 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=96.5
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
.+++++++|+++ +++++.+.. +.+..+.++| +.+.+|..++..+.... +..+
T Consensus 104 ~~~~i~v~T~~~------l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~---------------~~~~ 161 (337)
T 2z0m_A 104 RNADIVVATPGR------LLDLWSKGV-IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQT---------------SNRK 161 (337)
T ss_dssp TTCSEEEECHHH------HHHHHHTTS-CCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC---------------TTCS
T ss_pred CCCCEEEECHHH------HHHHHHcCC-cchhhCcEEEEEChHHhhccccHHHHHHHHhhC---------------Cccc
Confidence 458888888887 666654432 2345556555 55666766666665555 6678
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHhhhhc
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLLLQV 257 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~~l~~ 257 (838)
|.++||||+++.+.+....++. ++..+.. .....++.+.++.++...+... ..+.....+++|||+++.-..
T Consensus 162 ~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lvf~~~~~~~ 233 (337)
T 2z0m_A 162 ITGLFSATIPEEIRKVVKDFIT-NYEEIEA-----CIGLANVEHKFVHVKDDWRSKV--QALRENKDKGVIVFVRTRNRV 233 (337)
T ss_dssp EEEEEESCCCHHHHHHHHHHSC-SCEEEEC-----SGGGGGEEEEEEECSSSSHHHH--HHHHTCCCSSEEEECSCHHHH
T ss_pred EEEEEeCcCCHHHHHHHHHhcC-Cceeeec-----ccccCCceEEEEEeChHHHHHH--HHHHhCCCCcEEEEEcCHHHH
Confidence 9999999999999999999998 7877432 1334568888888877654432 455666778999997654321
Q ss_pred -----CCceeEEeeCCCChhh
Q psy12983 258 -----IKIKVQTRIGKEDFVT 273 (838)
Q Consensus 258 -----~~~~~~~~hg~~~~~~ 273 (838)
.--.+..+||+++..+
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~ 254 (337)
T 2z0m_A 234 AKLVRLFDNAIELRGDLPQSV 254 (337)
T ss_dssp HHHHTTCTTEEEECTTSCHHH
T ss_pred HHHHHHhhhhhhhcCCCCHHH
Confidence 1126889999987654
No 127
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00019 Score=86.56 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHH
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKEL 491 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~ 491 (838)
+..+++.|.+|+..++.+.-.+|.||.|+|||.+..-.+...+.. .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999999999887778999999999998765444433321 3678999999999999998887764
No 128
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.65 E-value=3.4e-06 Score=94.44 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=87.2
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe----------------eec-cccccc-cccceEeecccccccc
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF----------------VLN-QGLGKY-FKEVSVSFTECPNLTS 166 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv----------------~l~-~g~~~~-~~~i~~~~~d~~dl~~ 166 (838)
.|+++++||++ ++++++. +.+..+.++| +|+ +||.++ +..+...+... .
T Consensus 117 ~~~Iiv~Tp~~------l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~----~ 183 (414)
T 3oiy_A 117 DYHILVFSTQF------VSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG----K 183 (414)
T ss_dssp CCSEEEEEHHH------HHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHT----C
T ss_pred CCCEEEECHHH------HHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccc----h
Confidence 48999999998 7677653 3334555555 223 777777 66666555100 0
Q ss_pred ccCcCCCCCCceEEEEEEe-CChHHH-HHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCC
Q psy12983 167 HPFNLTSAERRQTMLFSAT-TTAKTE-TLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHI 244 (838)
Q Consensus 167 i~~~l~~p~~rQtlLFSAT-~~~~v~-~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~ 244 (838)
....++.+..+|+++|||| .|+.+. .+...++. +..........++.|.++.++ |...|..+++. ..
T Consensus 184 ~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~l~~-~~ 252 (414)
T 3oiy_A 184 IYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-------FTVGRLVSVARNITHVRISSR---SKEKLVELLEI-FR 252 (414)
T ss_dssp CCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-------CCSSCCCCCCCSEEEEEESSC---CHHHHHHHHHH-HC
T ss_pred hhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-------cCcCccccccccchheeeccC---HHHHHHHHHHH-cC
Confidence 1111221267899999999 676665 34444433 222333455667899988774 44556666666 34
Q ss_pred CCeeeeHHh---------hhhcCCceeE-EeeCC
Q psy12983 245 GEIVAWHVL---------LLQVIKIKVQ-TRIGK 268 (838)
Q Consensus 245 ~~~iVF~~~---------~l~~~~~~~~-~~hg~ 268 (838)
+++||||++ .|...++.+. .+||+
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 789999644 4566799998 99996
No 129
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.64 E-value=6.4e-06 Score=82.51 Aligned_cols=112 Identities=23% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCccCchhhHHHHHHHHHhcccc---------cCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe--
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTV---------YPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF-- 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv-- 141 (838)
+||-..-.-|..-+.+..+++.+ ..+...+...++++++|+++ +++++++. .+.+..+.++|
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~------l~~~~~~~-~~~~~~~~~iViD 151 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGR------ALDYLRQG-VLDLSRVEVAVLD 151 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHH------HHHHHHHT-SSCCTTCSEEEEE
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHH------HHHHHHcC-CcchhhceEEEEE
Confidence 45544444566666665444322 11122233568899999988 66666542 23456677666
Q ss_pred ----eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 142 ----VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 142 ----~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
+++.+|...+..+...+ +..+|+++||||+|++++++++.+++ +|..|.+
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~---------------~~~~~~i~~SAT~~~~~~~~~~~~~~-~p~~i~~ 205 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSAT---------------PPSRQTLLFSATLPSWAKRLAERYMK-NPVLINV 205 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTS---------------CTTSEEEEECSSCCHHHHHHHHHHCS-SCEEEEC
T ss_pred ChhHhhccchHHHHHHHHHhC---------------CccCeEEEEEEecCHHHHHHHHHHcC-CCeEEEc
Confidence 66677777777776555 67899999999999999999999999 9998654
No 130
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.61 E-value=5.5e-06 Score=103.40 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=88.3
Q ss_pred CCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-----------cccccccccceEeeccccccccc
Q psy12983 105 NPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-----------QGLGKYFKEVSVSFTECPNLTSH 167 (838)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-----------~g~~~~~~~i~~~~~d~~dl~~i 167 (838)
+|+++++|||+ +++++++ +..+.++| |++ +||..++.. ..+
T Consensus 155 ~~~IlV~TP~~------L~~~l~~-----L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~--~~~--------- 212 (1054)
T 1gku_B 155 NFKIVITTTQF------LSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT--KSW--------- 212 (1054)
T ss_dssp GCSEEEEEHHH------HHHCSTT-----SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTT--TEE---------
T ss_pred CCCEEEEcHHH------HHHHHHH-----hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhh--hhc---------
Confidence 39999999999 8888876 44677666 565 444433322 111
Q ss_pred cCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCe
Q psy12983 168 PFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEI 247 (838)
Q Consensus 168 ~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~ 247 (838)
+..+|+++||||++.. ..++..++. ++..+.+ ........++.|.++ ..+|...|..+++.. .+++
T Consensus 213 ------~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v--~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~ 278 (1054)
T 1gku_B 213 ------VGEARGCLMVSTATAK-KGKKAELFR-QLLNFDI--GSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGG 278 (1054)
T ss_dssp ------EECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCC--SCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCE
T ss_pred ------ccCCceEEEEecCCCc-hhHHHHHhh-cceEEEc--cCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCE
Confidence 4578999999999988 656555555 5544322 334455567888887 356677777888765 4789
Q ss_pred eeeHHhh---------hhcCCceeEEeeCCCC
Q psy12983 248 VAWHVLL---------LQVIKIKVQTRIGKED 270 (838)
Q Consensus 248 iVF~~~~---------l~~~~~~~~~~hg~~~ 270 (838)
||||++. |+.. +.+..+||+++
T Consensus 279 LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~ 309 (1054)
T 1gku_B 279 IIYARTGEEAEEIYESLKNK-FRIGIVTATKK 309 (1054)
T ss_dssp EEEESSHHHHHHHHHTTTTS-SCEEECTTSSS
T ss_pred EEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH
Confidence 9996553 3444 89999999984
No 131
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.59 E-value=1.1e-05 Score=82.52 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=65.0
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccc-cccccccceEeeccccccccccCcCCCCCC
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQG-LGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g-~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
..++++++|+++ ++++++.. .+.+..+.++| +++.| |.++++.+...+ |+.
T Consensus 141 ~~~~Iiv~Tp~~------l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~---------------~~~ 198 (230)
T 2oxc_A 141 KKCHIAVGSPGR------IKQLIELD-YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL---------------PAS 198 (230)
T ss_dssp TSCSEEEECHHH------HHHHHHTT-SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---------------CSS
T ss_pred cCCCEEEECHHH------HHHHHhcC-CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhC---------------CCC
Confidence 568999999998 77776543 34566777777 67777 888888777766 678
Q ss_pred ceEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 177 RQTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
+|+++||||+|+++.+++..+++ +|..|.+
T Consensus 199 ~~~l~lSAT~~~~~~~~~~~~~~-~p~~i~~ 228 (230)
T 2oxc_A 199 KQMLAVSATYPEFLANALTKYMR-DPTFVRL 228 (230)
T ss_dssp CEEEEEESCCCHHHHHHHTTTCS-SCEEECC
T ss_pred CeEEEEEeccCHHHHHHHHHHcC-CCeEEEc
Confidence 99999999999999999999999 9988643
No 132
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.57 E-value=0.00047 Score=83.13 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
...+++.|.+|+..++.+.-.+|.||.|+|||.+..-.+ ..+.. ..+.++++++||..-+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i-~~l~~-----~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLAR-----QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH-HHHHT-----TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH-HHHHH-----cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 347899999999998888889999999999998754333 33332 2467899999999999988877655
No 133
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.53 E-value=0.00014 Score=86.15 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHcCC-CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 418 KMTEIQARTIPPLLEGR-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~-dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
.+++-|.+|+..++..+ -.+|+||.|+|||.+.+-.+.+++. .+.++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 68999999999988765 4799999999999886665555553 367899999999999998877754
No 134
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.53 E-value=2.8e-05 Score=78.96 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
.+++++++|+++ +++++.+. .+.+..+.++| +++.+|...+..+...+ +...
T Consensus 130 ~~~~iiv~Tp~~------l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~---------------~~~~ 187 (224)
T 1qde_A 130 RDAQIVVGTPGR------VFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL---------------PPTT 187 (224)
T ss_dssp TTCSEEEECHHH------HHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS---------------CTTC
T ss_pred CCCCEEEECHHH------HHHHHHhC-CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC---------------CccC
Confidence 458999999998 77776553 23456667666 66677777777776666 6789
Q ss_pred eEEEEEEeCChHHHHHHHHhccCCCEEEEE
Q psy12983 178 QTMLFSATTTAKTETLTKLALKKEPVYIGV 207 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~~l~~~p~~i~i 207 (838)
|+++||||+++++.++++.+++ +|+.|.+
T Consensus 188 ~~i~lSAT~~~~~~~~~~~~~~-~p~~i~~ 216 (224)
T 1qde_A 188 QVVLLSATMPNDVLEVTTKFMR-NPVRILV 216 (224)
T ss_dssp EEEEEESSCCHHHHHHHHHHCS-SCEEEC-
T ss_pred eEEEEEeecCHHHHHHHHHHCC-CCEEEEe
Confidence 9999999999999999999999 9998665
No 135
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.48 E-value=2e-05 Score=78.87 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=62.0
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
...++++++|+++ +++++.+.. ..+..+.++| +++.+|...++.+...+ |+.
T Consensus 120 ~~~~~i~v~T~~~------l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---------------~~~ 177 (206)
T 1vec_A 120 DDTVHVVIATPGR------ILDLIKKGV-AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL---------------PKN 177 (206)
T ss_dssp TSCCSEEEECHHH------HHHHHHTTC-SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS---------------CTT
T ss_pred CCCCCEEEeCHHH------HHHHHHcCC-cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhC---------------Ccc
Confidence 4568889999988 666665432 3455667666 66667777777776666 678
Q ss_pred ceEEEEEEeCChHHHHHHHHhccCCCEEE
Q psy12983 177 RQTMLFSATTTAKTETLTKLALKKEPVYI 205 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~l~~~p~~i 205 (838)
+|+++||||+|+++.++++.+++ +|..|
T Consensus 178 ~~~l~~SAT~~~~~~~~~~~~l~-~p~~i 205 (206)
T 1vec_A 178 RQILLYSATFPLSVQKFMNSHLE-KPYEI 205 (206)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCS-SCEEE
T ss_pred ceEEEEEeeCCHHHHHHHHHHcC-CCeEe
Confidence 99999999999999999999999 89874
No 136
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.48 E-value=5.9e-06 Score=97.91 Aligned_cols=48 Identities=6% Similarity=0.006 Sum_probs=36.7
Q ss_pred EEECCcchHHHHHHHHHhh--CCCCCeeeeH---------HhhhhcCCceeEEeeCCCC
Q psy12983 223 YVVCPSEKRFLLLFTFLKK--NHIGEIVAWH---------VLLLQVIKIKVQTRIGKED 270 (838)
Q Consensus 223 ~v~v~~~~K~~~L~~ll~~--~~~~~~iVF~---------~~~l~~~~~~~~~~hg~~~ 270 (838)
++.+..++|+..+...+.. ....++|||+ +..|...|+++..|||+..
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 4566778899888887754 2456799995 4556788999999999964
No 137
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.37 E-value=2e-05 Score=79.78 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=60.8
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eec-cccccccccceEeeccccccccccCcCCCCCC
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLN-QGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~-~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
..|+++++|+++ +++++++. .+.+..+.++| +++ .+|..++..+...+ ++.
T Consensus 133 ~~~~i~v~T~~~------l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~---------------~~~ 190 (220)
T 1t6n_A 133 NCPHIVVGTPGR------ILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT---------------PHE 190 (220)
T ss_dssp SCCSEEEECHHH------HHHHHHTT-SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS---------------CSS
T ss_pred CCCCEEEeCHHH------HHHHHHhC-CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC---------------CCc
Confidence 357899999988 77766553 23456677666 444 46766676666555 678
Q ss_pred ceEEEEEEeCChHHHHHHHHhccCCCEEEE
Q psy12983 177 RQTMLFSATTTAKTETLTKLALKKEPVYIG 206 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~l~~~p~~i~ 206 (838)
+|+++||||++.+++++++.+++ +|..|.
T Consensus 191 ~~~i~~SAT~~~~~~~~~~~~~~-~p~~i~ 219 (220)
T 1t6n_A 191 KQVMMFSATLSKEIRPVCRKFMQ-DPMEIF 219 (220)
T ss_dssp SEEEEEESCCCTTTHHHHHTTCS-SCEEEE
T ss_pred CeEEEEEeecCHHHHHHHHHHcC-CCeEEe
Confidence 99999999999999999999999 998754
No 138
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00027 Score=88.32 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=70.9
Q ss_pred CCccCchhhHHHHHHHHHhcccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccc
Q psy12983 73 VPTLNVPSIWESLLDRIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQG 146 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g 146 (838)
+||-..-.-|..-+-+..|..-+.....-.-..++++++|+++ +++++.+... .+..+.++| +++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~------L~~~L~~~~~-~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEI------LRSMLYRGSE-VMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHH------HHHHHHHCSS-HHHHEEEEEEETGGGTTSHH
T ss_pred cCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHH------HHHHHHcCcc-ccccCCEEEEhhhhhccccc
Confidence 3443333333333334333333333333344567888999988 7777765443 466777777 66677
Q ss_pred cccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChH--HHHHHHHhccCCCEEEE
Q psy12983 147 LGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAK--TETLTKLALKKEPVYIG 206 (838)
Q Consensus 147 ~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~--v~~la~~~l~~~p~~i~ 206 (838)
|...++.++..+ |...|+++||||+|.. +..+...... +|..+.
T Consensus 307 rg~~~e~ii~~l---------------~~~~qvl~lSATipn~~e~a~~l~~~~~-~~~~vi 352 (1108)
T 3l9o_A 307 RGVVWEETIILL---------------PDKVRYVFLSATIPNAMEFAEWICKIHS-QPCHIV 352 (1108)
T ss_dssp HHHHHHHHHHHS---------------CTTSEEEEEECSCSSCHHHHHHHHHHTC-SCEEEE
T ss_pred hHHHHHHHHHhc---------------CCCceEEEEcCCCCCHHHHHHHHHhhcC-CCeEEE
Confidence 777788877776 7789999999999864 4466666666 676643
No 139
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.23 E-value=0.0085 Score=70.76 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... .+..+++++++|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4789999999973 3578999999999999987666666554311 2346899999999999999999888754
No 140
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.02 E-value=0.0015 Score=76.36 Aligned_cols=151 Identities=10% Similarity=-0.029 Sum_probs=86.2
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccc--cccccccceEeeccccccccccCcCCCCC
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQG--LGKYFKEVSVSFTECPNLTSHPFNLTSAE 175 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g--~~~~~~~i~~~~~d~~dl~~i~~~l~~p~ 175 (838)
..+..++.||++=.-+..+++++++ .+.+..+.++| +.+.| |..++..+.... .. ..
T Consensus 135 ~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~-------~~------~~ 199 (591)
T 2v1x_A 135 SELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK-------RQ------FP 199 (591)
T ss_dssp CCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHH-------HH------CT
T ss_pred CCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHH-------Hh------CC
Confidence 4567777777751111223444432 12233445454 55555 666655432111 00 23
Q ss_pred CceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCc--chHHHHHHHHHhh-CCCCCeeeeHH
Q psy12983 176 RRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPS--EKRFLLLFTFLKK-NHIGEIVAWHV 252 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~--~~K~~~L~~ll~~-~~~~~~iVF~~ 252 (838)
..|+++||||+++.+......++. .+..+.+... ....++...+...+. .++...|..++.. ...+++||||+
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l~-~~~~~~~~~~---~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~ 275 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKILC-IEKCFTFTAS---FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCF 275 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTT-CCSCEEEECC---CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECS
T ss_pred CCcEEEEecCCCHHHHHHHHHHhC-CCCcEEEecC---CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeC
Confidence 589999999999999877777665 3322112211 122334444333332 3456667777764 35678999954
Q ss_pred ---------hhhhcCCceeEEeeCCCChhh
Q psy12983 253 ---------LLLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 253 ---------~~l~~~~~~~~~~hg~~~~~~ 273 (838)
..|...++.+..+||+++..+
T Consensus 276 sr~~~e~la~~L~~~g~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 276 SQKDSEQVTVSLQNLGIHAGAYHANLEPED 305 (591)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 445677999999999997654
No 141
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.80 E-value=0.016 Score=63.50 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+..-|..+++.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-----~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-----SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 7899999999877555678999999999999876666554333 356789999999999999888888776544
No 142
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.75 E-value=0.0082 Score=63.64 Aligned_cols=124 Identities=9% Similarity=0.094 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCCc
Q psy12983 626 SEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAA 703 (838)
Q Consensus 626 ~~~k~~~l~~~l~~--~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~~ 703 (838)
...|+..+-.++.. ..+.+++||++..+..+-+.+++...++....+.|..... +.+. .+....+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc----ccCCceEEEEECCCC
Confidence 34566666666654 3567999999999999999999999999999999985443 2221 245556655577666
Q ss_pred cCCC-----CCCccEEEEeCCCCCHHHH-HHHhcccCcCC---CCccEEEEEeccCchHH
Q psy12983 704 RGLD-----IPAVDWIVQYDPPDDPKEY-IHRVGRTARGE---GSSGHALLILRPEELGF 754 (838)
Q Consensus 704 ~GiD-----ip~v~~VI~~d~p~s~~~y-~Qr~GRagR~~---g~~g~~i~l~~~~e~~~ 754 (838)
-|+| +..++.||.||..+++..= +|++-|+.|.+ ++.-.+|-++.....+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6776 6789999999999988874 89888888841 34456777777655443
No 143
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.0029 Score=62.46 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=47.0
Q ss_pred HHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEE
Q psy12983 194 TKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQT 264 (838)
Q Consensus 194 a~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~ 264 (838)
...||+ +|..|.+ +....+..+|+|+|+.|++.+|...|..++.... +++|||+++ .|...++.+..
T Consensus 8 ~~~~~~-~p~~i~v--~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDL-GTENLYF--QSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp -----------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccC-CCEEEEE--CCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 346788 8998766 3445667889999999999999999999998754 589999543 45666899999
Q ss_pred eeCCCChhh
Q psy12983 265 RIGKEDFVT 273 (838)
Q Consensus 265 ~hg~~~~~~ 273 (838)
+||+++..+
T Consensus 84 lhg~~~~~~ 92 (191)
T 2p6n_A 84 IHGGKDQEE 92 (191)
T ss_dssp ECTTSCHHH
T ss_pred EeCCCCHHH
Confidence 999997654
No 144
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.35 E-value=0.06 Score=62.77 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~ 496 (838)
.++|+|...+..+-..+.+++..+-|+|||.+....++..+.. .++..+++++|+...|.++++.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999877556779999999999999866555444433 3466899999999999999988888776543
No 145
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.34 E-value=0.0074 Score=58.35 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=48.7
Q ss_pred ccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 215 TVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 215 ~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
+.++|+|+|+.++.++|...|..+++....+++|||+++ .|...++.+..+||+++..+
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEE 69 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHH
Confidence 346799999999999999999999998888899999644 45667999999999987654
No 146
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.25 E-value=0.011 Score=56.42 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=50.2
Q ss_pred cccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 214 ATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 214 ~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
....+|+|+|+.++.++|...|..++.....+++|||+++ .|...++.+..+||+++..+
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQED 73 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 3455699999999999999999999998888899999543 45667999999999987654
No 147
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0095 Score=57.66 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=50.2
Q ss_pred cccccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHH---------hhhhcCCceeEEeeCCCChhh
Q psy12983 214 ATVAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHV---------LLLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 214 ~~~~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~---------~~l~~~~~~~~~~hg~~~~~~ 273 (838)
.+.++|+|+|+.|+..+ |...|..+++....+++|||++ ..|...++.+..+||+++..+
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQ 72 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 35678999999999865 9999999999888889999954 345677999999999987654
No 148
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.19 E-value=0.0031 Score=73.87 Aligned_cols=128 Identities=10% Similarity=-0.071 Sum_probs=78.3
Q ss_pred CcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe-----eeccccccccccceEeeccccccccccCcCCC
Q psy12983 99 ESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF-----VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTS 173 (838)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv-----~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~ 173 (838)
...+...+.++++|||+ ++ +.+.+.++.++++| +++++|..++..+...+
T Consensus 291 ~~~~~~~~~IlV~TPGr------Ll----~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l--------------- 345 (666)
T 3o8b_A 291 VRTITTGAPVTYSTYGK------FL----ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQA--------------- 345 (666)
T ss_dssp SCEECCCCSEEEEEHHH------HH----HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHT---------------
T ss_pred cEeccCCCCEEEECcHH------HH----hCCCcccCcccEEEEccchhcCccHHHHHHHHHHhh---------------
Confidence 33456678888888888 43 23345566778777 78888888888777776
Q ss_pred CCCce--EEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeH
Q psy12983 174 AERRQ--TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWH 251 (838)
Q Consensus 174 p~~rQ--tlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~ 251 (838)
+..+| .++||||++..+. .. .|....+.... ...+ +. ...... +.....+++|||+
T Consensus 346 ~~~~~~llil~SAT~~~~i~------~~-~p~i~~v~~~~----~~~i-~~---~~~~~~-------l~~~~~~~vLVFv 403 (666)
T 3o8b_A 346 ETAGARLVVLATATPPGSVT------VP-HPNIEEVALSN----TGEI-PF---YGKAIP-------IEAIRGGRHLIFC 403 (666)
T ss_dssp TTTTCSEEEEEESSCTTCCC------CC-CTTEEEEECBS----CSSE-EE---TTEEEC-------GGGSSSSEEEEEC
T ss_pred hhcCCceEEEECCCCCcccc------cC-CcceEEEeecc----cchh-HH---HHhhhh-------hhhccCCcEEEEe
Confidence 66666 5677999998532 12 33322221111 0111 11 111101 2234677899996
Q ss_pred Hh---------hhhcCCceeEEeeCCCChhh
Q psy12983 252 VL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 252 ~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
++ .|+..++++..+||+++..+
T Consensus 404 ~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 404 HSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp SCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 44 45667999999999998654
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.07 E-value=0.022 Score=55.17 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHH---------cCCCEEEEecCCCCchhhhH
Q psy12983 420 TEIQARTIPPLL---------EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 420 ~~~Q~~ai~~i~---------~~~dvlv~apTGsGKTl~~~ 451 (838)
.+.|.+++..+. .++.+++.||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666666543 36789999999999997653
No 150
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.94 E-value=0.019 Score=56.24 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
.|+-.++.||+|+|||..++-.+..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeecc
Confidence 3566789999999999876555544432 356788888874
No 151
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.93 E-value=0.0046 Score=76.52 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=48.7
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
..+++++.|+++ +++++.... ..+..+.++| +.+.+|...+++++..+ |...
T Consensus 122 ~~~~IlV~Tpe~------L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l---------------~~~v 179 (997)
T 4a4z_A 122 PDANCLIMTTEI------LRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML---------------PQHV 179 (997)
T ss_dssp TTSSEEEEEHHH------HHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS---------------CTTC
T ss_pred CCCCEEEECHHH------HHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHhc---------------ccCC
Confidence 346677777777 666654432 2345666666 77788888888887777 7789
Q ss_pred eEEEEEEeCChHHHHHHHH
Q psy12983 178 QTMLFSATTTAKTETLTKL 196 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~ 196 (838)
|++++|||+|... +++..
T Consensus 180 ~iIlLSAT~~n~~-ef~~~ 197 (997)
T 4a4z_A 180 KFILLSATVPNTY-EFANW 197 (997)
T ss_dssp EEEEEECCCTTHH-HHHHH
T ss_pred CEEEEcCCCCChH-HHHHH
Confidence 9999999998654 34433
No 152
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.02 Score=70.87 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=49.4
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCc
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERR 177 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~r 177 (838)
..+++++.|+++ +.+++.+.. ..+..+.++| +.+.++...++.++..+ |...
T Consensus 167 ~~~~IvV~Tpe~------L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l---------------~~~~ 224 (1010)
T 2xgj_A 167 PDAGCLVMTTEI------LRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILL---------------PDKV 224 (1010)
T ss_dssp TTCSEEEEEHHH------HHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS---------------CTTC
T ss_pred CCCCEEEEcHHH------HHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhc---------------CCCC
Confidence 356777788776 555554322 3456677776 55555666666666555 6789
Q ss_pred eEEEEEEeCChHHHHHHHH---hccCCCEEEE
Q psy12983 178 QTMLFSATTTAKTETLTKL---ALKKEPVYIG 206 (838)
Q Consensus 178 QtlLFSAT~~~~v~~la~~---~l~~~p~~i~ 206 (838)
|++++|||+|... +++.. ... ++..+.
T Consensus 225 ~il~LSATi~n~~-e~a~~l~~~~~-~~~~vi 254 (1010)
T 2xgj_A 225 RYVFLSATIPNAM-EFAEWICKIHS-QPCHIV 254 (1010)
T ss_dssp EEEEEECCCTTHH-HHHHHHHHHHT-SCEEEE
T ss_pred eEEEEcCCCCCHH-HHHHHHHhhcC-CCeEEE
Confidence 9999999998643 23332 334 566643
No 153
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.84 E-value=0.00083 Score=78.81 Aligned_cols=100 Identities=10% Similarity=0.011 Sum_probs=58.4
Q ss_pred ccccchhe-----eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEe
Q psy12983 134 SVSIFCPF-----VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVD 208 (838)
Q Consensus 134 ~~~~~~lv-----~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~ 208 (838)
++.+.++| .++++|...+..+...+ + ..++|+++||||++..+..++. . ++..+.+.
T Consensus 275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l-------------~-~~~~q~il~SAT~~~~~~~~~~---~-~~~~~~v~ 336 (618)
T 2whx_A 275 VPNYNLIVMDEAHFTDPCSVAARGYISTRV-------------E-MGEAAAIFMTATPPGSTDPFPQ---S-NSPIEDIE 336 (618)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHH-------------H-HTSCEEEEECSSCTTCCCSSCC---C-SSCEEEEE
T ss_pred ccCCeEEEEECCCCCCccHHHHHHHHHHHh-------------c-ccCccEEEEECCCchhhhhhhc---c-CCceeeec
Confidence 45566665 33555555565555444 1 2579999999999988765433 2 55554443
Q ss_pred cCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCC
Q psy12983 209 DTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGK 268 (838)
Q Consensus 209 ~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~ 268 (838)
..- +.......+. .+.+ ..+++||||++ .|+..++.+..+||+
T Consensus 337 ~~~---------------~~~~~~~ll~-~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 388 (618)
T 2whx_A 337 REI---------------PERSWNTGFD-WITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 388 (618)
T ss_dssp CCC---------------CSSCCSSSCH-HHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ccC---------------CHHHHHHHHH-HHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH
Confidence 210 1111111122 2223 35789999644 456679999999996
No 154
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.69 E-value=0.012 Score=67.72 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=60.8
Q ss_pred CceEEEEEEeCChHHHH-HHHHh-ccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh
Q psy12983 176 RRQTMLFSATTTAKTET-LTKLA-LKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL 253 (838)
Q Consensus 176 ~rQtlLFSAT~~~~v~~-la~~~-l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~ 253 (838)
..|++++|||.++.+.. +.... +. +|..+ +. . ....++. |..++..++...+..++.....+++|||+++
T Consensus 174 ~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~-~~-~---~~r~~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~s 245 (523)
T 1oyw_A 174 TLPFMALTATADDTTRQDIVRLLGLN-DPLIQ-IS-S---FDRPNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNS 245 (523)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTCC-SCEEE-EC-C---CCCTTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhCCC-CCeEE-eC-C---CCCCceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCC
Confidence 47899999999998754 44333 34 56542 21 1 1122343 4444556777888888887777799999644
Q ss_pred ---------hhhcCCceeEEeeCCCChhh
Q psy12983 254 ---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 254 ---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
.|...++.+..+||+++.-+
T Consensus 246 r~~~e~l~~~L~~~g~~~~~~h~~l~~~~ 274 (523)
T 1oyw_A 246 RAKVEDTAARLQSKGISAAAYHAGLENNV 274 (523)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 45667999999999987643
No 155
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.61 E-value=0.02 Score=54.81 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=47.0
Q ss_pred ccceEEEEECCcch-HHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 217 AGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 217 ~~i~q~~v~v~~~~-K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
++|+|+|+.++.++ |...|..+++....+++|||+++ .|...++.+..+||+++..+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 68 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 46899999999877 99999999998888999999543 45667899999999987643
No 156
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.53 E-value=0.022 Score=56.00 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=29.3
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
|+-.++.||+|+|||..++-.+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCEEEEEEecc
Confidence 45678999999999987766655543 2477899998874
No 157
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.52 E-value=0.021 Score=55.86 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=44.3
Q ss_pred ccccccceEEEEECCcchHHHHHHHHHhhC-CCCCeeeeHH---------hhhhcCCceeEEeeCCCChh
Q psy12983 213 EATVAGLEQGYVVCPSEKRFLLLFTFLKKN-HIGEIVAWHV---------LLLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 213 ~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~-~~~~~iVF~~---------~~l~~~~~~~~~~hg~~~~~ 272 (838)
..+.++|+|+|+.|+..+|...|..+++.. ..+++|||++ ..|...++.+..+||+++..
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~ 83 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 83 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHH
Confidence 355678999999999999999999999876 4678999954 34566799999999998764
No 158
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.0015 Score=66.71 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=46.7
Q ss_pred cCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe--eecc-ccccccc-cceEeeccccccccccCcCCCCCCceE
Q psy12983 104 SNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF--VLNQ-GLGKYFK-EVSVSFTECPNLTSHPFNLTSAERRQT 179 (838)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv--~l~~-g~~~~~~-~i~~~~~d~~dl~~i~~~l~~p~~rQt 179 (838)
..++++++|+|+ +++++++ .++.++++| ..+. ++..++. .++..+.. . ..++|+
T Consensus 154 ~~~~Ivv~Tpg~------l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~---------~---~~~~~~ 211 (235)
T 3llm_A 154 PHASIMFCTVGV------LLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ---------A---YPEVRI 211 (235)
T ss_dssp SSSEEEEEEHHH------HHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH---------H---CTTSEE
T ss_pred CCCeEEEECHHH------HHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHh---------h---CCCCeE
Confidence 567799999999 8888765 366777776 2221 2333322 12222211 0 136899
Q ss_pred EEEEEeCChHHHHHHHHhccCCCE
Q psy12983 180 MLFSATTTAKTETLTKLALKKEPV 203 (838)
Q Consensus 180 lLFSAT~~~~v~~la~~~l~~~p~ 203 (838)
++||||++.+. +++.+.. .|+
T Consensus 212 il~SAT~~~~~--~~~~~~~-~pv 232 (235)
T 3llm_A 212 VLMSATIDTSM--FCEYFFN-CPI 232 (235)
T ss_dssp EEEECSSCCHH--HHHHTTS-CCC
T ss_pred EEEecCCCHHH--HHHHcCC-CCE
Confidence 99999999887 6666655 554
No 159
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.36 E-value=0.014 Score=55.03 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999754
No 160
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.11 E-value=0.019 Score=57.25 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=29.7
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
|+-.++.|++|+|||..++-.+..+. ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCEEEEEEeccC
Confidence 45567899999999988776666654 24778999999764
No 161
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.00 E-value=0.013 Score=59.15 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=61.6
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-.++.|++|+|||..++-.+..+. ..+.+++++.|...-- . ........+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-------~~g~kVli~~~~~d~r---~--~~~i~srlG~~------------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-------YADVKYLVFKPKIDTR---S--IRNIQSRTGTS------------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-------HTTCCEEEEEECCCGG---G--CSSCCCCCCCS-------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-------hcCCEEEEEEeccCch---H--HHHHHHhcCCC-------------
Confidence 356688999999999987766555543 2466788887754210 0 00000101110
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 512 AQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
...+-+.+.+.+++.+.... .-.+.++|||||+|.+... ....+..+.+ ...++++..-
T Consensus 66 ------~~~~~~~~~~~i~~~i~~~~--~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 66 ------LPSVEVESAPEILNYIMSNS--FNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp ------SCCEEESSTHHHHHHHHSTT--SCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEECC
T ss_pred ------ccccccCCHHHHHHHHHHHh--hCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEec
Confidence 01233456666666665431 1245789999999975432 2223333333 2555555443
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.13 Score=54.81 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=19.1
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIY 459 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~ 459 (838)
+.++++.||+|+|||.+.- .++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999998753 3344443
No 163
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.56 E-value=0.046 Score=58.81 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEecCCCCchhhhHHHH
Q psy12983 419 MTEIQARTIPPLL----EGR---DLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 419 ~~~~Q~~ai~~i~----~~~---dvlv~apTGsGKTl~~~lp~ 454 (838)
++|||.+++..+. +++ .+++.||.|+|||..+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 4688888877654 332 48999999999998765444
No 164
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.47 E-value=0.0088 Score=71.28 Aligned_cols=63 Identities=8% Similarity=-0.017 Sum_probs=38.4
Q ss_pred CCccCchhhHHHHHHHHHh--cccc---------cCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVA--ELTV---------YPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||...-.-|.+.+.+... |+.| ..+...+..+++++++||++ +++++.+.....+..+.++|
T Consensus 68 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~------L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 68 ANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHH------HHHHHHTTSSCCGGGCSEEE
T ss_pred ECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHH------HHHHHhcCcccccccccEEE
Confidence 4555555567777776654 2222 22223344678999999998 88887665433455666554
No 165
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.44 E-value=0.0011 Score=74.50 Aligned_cols=73 Identities=16% Similarity=0.040 Sum_probs=41.2
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh-
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~- 253 (838)
...|+++||||+++.+..++.. . .+.. .+. ..++...+...+..+.+ ..+++||||++
T Consensus 129 ~~~~~l~~SAT~~~~~~~~~~~--~-~~~~-~~~---------------~~~~~~~~~~~~~~l~~--~~~~~lVF~~s~ 187 (440)
T 1yks_A 129 NESATILMTATPPGTSDEFPHS--N-GEIE-DVQ---------------TDIPSEPWNTGHDWILA--DKRPTAWFLPSI 187 (440)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--S-SCEE-EEE---------------CCCCSSCCSSSCHHHHH--CCSCEEEECSCH
T ss_pred CCceEEEEeCCCCchhhhhhhc--C-CCee-Eee---------------eccChHHHHHHHHHHHh--cCCCEEEEeCCH
Confidence 5689999999998876543321 1 2221 111 01122111112222222 25789999644
Q ss_pred --------hhhcCCceeEEeeCC
Q psy12983 254 --------LLQVIKIKVQTRIGK 268 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~ 268 (838)
.|+..++.+..+||+
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNRK 210 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEecch
Confidence 456678999999994
No 166
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.40 E-value=0.081 Score=58.68 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~ 513 (838)
+-.++.|+.|+|||... .+.+ . ....+|++||++++.++.+.+... +..
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~-~-------~~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRV-N-------FEEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHC-C-------TTTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred cEEEEEcCCCCCHHHHH----HHHh-c-------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 34689999999999653 2221 1 135699999999998877665331 100
Q ss_pred HHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 514 ~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
.....-+.|-++++. +......-..+++||||+-++ .. ..+..++...+. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 001223667666532 221111124789999999864 32 233334444444 566666544
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.40 E-value=0.094 Score=55.93 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
+..+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3689999999999997653
No 168
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.35 E-value=0.074 Score=53.54 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=31.6
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.|+-.++.|++|+|||..++-.+..+. ..+.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCeEEEEeecCC
Confidence 356688999999999988776666654 45788999988753
No 169
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.16 E-value=0.088 Score=62.95 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 417 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 417 ~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
..+++-|.+++.. .+..++|.|+.|||||.+..--+..++.... -...++++|+.|+..|.++.+.+.....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 3578999999999999987666666654311 2346799999999999999998887754
No 170
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.07 E-value=0.046 Score=53.60 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=27.5
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt 477 (838)
++-.++.||+|+|||.-.+..+-.... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEccc
Confidence 566899999999999655444444432 35788999886
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.05 E-value=0.33 Score=47.65 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT 583 (838)
..-.+|||||+|.+... ....+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 44579999999997653 344555566665556666655543
No 172
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.75 E-value=0.064 Score=63.58 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.+++-|++++.. .+..++|.|+.|||||.+..--+...+.... -+..++++|+.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 579999999975 3678999999999999987666666554311 2356799999999999999998887754
No 173
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.53 E-value=0.1 Score=66.17 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... .+-+..+++++++|+..+.++.+.+.....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 7899999999753 789999999999999987766666664411 112456899999999999999988887543
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.49 E-value=0.13 Score=54.73 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
...++++|||+|.+........+..++...+.+.++++.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999998622234455555555555666666443
No 175
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=93.46 E-value=0.15 Score=53.98 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=47.9
Q ss_pred cceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 218 GLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 218 ~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
+++|+++.++.++|+..|..++....++++||||++ .|...++.+..+||+++..+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGE 66 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHH
Confidence 378999999999999999999998778999999644 44667999999999987654
No 176
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.46 E-value=0.045 Score=65.78 Aligned_cols=141 Identities=12% Similarity=0.056 Sum_probs=78.5
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe--eec-cccccc-cccceEeeccccccccccCcCCCCCCce
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF--VLN-QGLGKY-FKEVSVSFTECPNLTSHPFNLTSAERRQ 178 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv--~l~-~g~~~~-~~~i~~~~~d~~dl~~i~~~l~~p~~rQ 178 (838)
-..+.+++.|+|+ +++++.+.+ .+..+.++| ..+ .++..+ +..++..+ ... -.+.|
T Consensus 183 ~~~~~I~v~T~G~------l~r~l~~~~--~l~~~~~lIlDEah~R~ld~d~~~~~l~~l---------~~~---~~~~~ 242 (773)
T 2xau_A 183 SNKTILKYMTDGM------LLREAMEDH--DLSRYSCIILDEAHERTLATDILMGLLKQV---------VKR---RPDLK 242 (773)
T ss_dssp CTTCSEEEEEHHH------HHHHHHHST--TCTTEEEEEECSGGGCCHHHHHHHHHHHHH---------HHH---CTTCE
T ss_pred CCCCCEEEECHHH------HHHHHhhCc--cccCCCEEEecCccccccchHHHHHHHHHH---------HHh---CCCce
Confidence 3567788888887 666654432 345555554 111 122222 11111111 000 13589
Q ss_pred EEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHH----HHHHHHHhhCCCCCeeeeHHh-
Q psy12983 179 TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRF----LLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 179 tlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~----~~L~~ll~~~~~~~~iVF~~~- 253 (838)
+++||||++. +.+++.+ . ++..+.+. + . ...++++|..++..++. ..+..+......+++|||+++
T Consensus 243 iIl~SAT~~~--~~l~~~~-~-~~~vi~v~-g-r---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~ 313 (773)
T 2xau_A 243 IIIMSATLDA--EKFQRYF-N-DAPLLAVP-G-R---TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGE 313 (773)
T ss_dssp EEEEESCSCC--HHHHHHT-T-SCCEEECC-C-C---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCH
T ss_pred EEEEeccccH--HHHHHHh-c-CCCccccc-C-c---ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCH
Confidence 9999999964 4565544 4 34443332 1 1 12478888777665543 233334445567899999643
Q ss_pred --------hhhc-----------CCceeEEeeCCCChh
Q psy12983 254 --------LLQV-----------IKIKVQTRIGKEDFV 272 (838)
Q Consensus 254 --------~l~~-----------~~~~~~~~hg~~~~~ 272 (838)
.+.. .++.+..+||+++.-
T Consensus 314 ~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 314 DEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHH
Confidence 2332 578999999998754
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.42 E-value=0.37 Score=49.78 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=16.0
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
..+++.||+|+|||..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5799999999999987543
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.28 E-value=0.6 Score=51.75 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.-+++.|++|+|||......+... .. .+.+++++. +.+.-+.++ +..+....++.+.....+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l-~~------~G~kVllv~~D~~r~~a~eq---L~~~~~~~gv~~~~~~~~~d---- 163 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY-KK------RGYKVGLVAADVYRPAAYDQ---LLQLGNQIGVQVYGEPNNQN---- 163 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH-HH------TTCCEEEEEECCSCHHHHHH---HHHHHHTTTCCEECCTTCSC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH------cCCeEEEEecCccchhHHHH---HHHHHHhcCCceeeccccCC----
Confidence 357889999999998765444332 22 345565554 344433333 33333333443322111111
Q ss_pred HHHHhcCCcEEEcChHHHH-HHHhcCcccccCCceEEEEeCCCccc---ccCcHHHHHHHHHHCCccceEEEEeeecccc
Q psy12983 512 AQKLAKGINIIVATPGRLL-DHLQNTPEFLYKNLQCLIIDEADRIL---DIGFEEDMKQIVNLLPKRRQTMLFSATTTAK 587 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~-~~l~~~~~~~~~~l~lvViDEah~l~---~~gf~~~~~~il~~l~~~~qil~lSAT~~~~ 587 (838)
|..+. ..+.. ....+.+++|||++-+.. +..+..++..+.....+..-++.++|+....
T Consensus 164 --------------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 164 --------------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 22111 11221 112467899999998754 2335667777777776677788888887655
Q ss_pred hHHHHHH
Q psy12983 588 TETLTKL 594 (838)
Q Consensus 588 ~~~l~~~ 594 (838)
....+..
T Consensus 227 a~~~a~~ 233 (433)
T 3kl4_A 227 AYDLASR 233 (433)
T ss_dssp GHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.08 E-value=0.34 Score=54.07 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=24.3
Q ss_pred CceEEEEeCCCccccc-CcHHHHHHHHHHC-CccceEEEEeee
Q psy12983 543 NLQCLIIDEADRILDI-GFEEDMKQIVNLL-PKRRQTMLFSAT 583 (838)
Q Consensus 543 ~l~lvViDEah~l~~~-gf~~~~~~il~~l-~~~~qil~lSAT 583 (838)
+.++++|||+|.+... .....+..++..+ ....++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4579999999998763 2334444444433 334556654443
No 180
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.04 E-value=0.92 Score=43.12 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.||+|+|||..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 679999999999997653
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.98 E-value=0.33 Score=46.27 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=16.8
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
...+++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999765433
No 182
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.97 E-value=0.12 Score=48.03 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=16.9
Q ss_pred HcCCCEEEEecCCCCchhhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~ 450 (838)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45678999999999999754
No 183
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.84 E-value=0.0064 Score=71.85 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh-
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~- 253 (838)
+.+|+++||||+++.+..+... + .|+. .+.. .++...+...+..+. + ..+++||||++
T Consensus 362 ~~~~vl~~SAT~~~~i~~~~~~--~-~~i~-~v~~---------------~~~~~~~~~~l~~l~-~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 362 GEAAAIFMTATPPGTSDPFPDT--N-SPVH-DVSS---------------EIPDRAWSSGFEWIT-D-YAGKTVWFVASV 420 (673)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--S-SCEE-EEEC---------------CCCSSCCSSCCHHHH-S-CCSCEEEECSSH
T ss_pred cCCcEEEEcCCCChhhhhhccc--C-CceE-EEee---------------ecCHHHHHHHHHHHH-h-CCCCEEEEECCH
Confidence 5789999999999886543321 1 2222 1211 011111111222222 2 46789999644
Q ss_pred --------hhhcCCceeEEeeCC
Q psy12983 254 --------LLQVIKIKVQTRIGK 268 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~ 268 (838)
.|+..++.+..+||+
T Consensus 421 ~~~e~la~~L~~~g~~v~~lHg~ 443 (673)
T 2wv9_A 421 KMSNEIAQCLQRAGKRVIQLNRK 443 (673)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSS
T ss_pred HHHHHHHHHHHhCCCeEEEeChH
Confidence 456678999999995
No 184
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.81 E-value=0.11 Score=51.65 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=28.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.|.-.++.|+.|+|||...+..+.... ..+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~-------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI-------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH-------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-------HcCCceEEEEeccC
Confidence 456679999999999976655554443 23577899998653
No 185
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.73 E-value=0.15 Score=59.36 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHc--CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy12983 418 KMTEIQARTIPPLLE--GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH 495 (838)
Q Consensus 418 ~~~~~Q~~ai~~i~~--~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~ 495 (838)
.+|..|.+++..+.. ....++.|+-|.|||.+.-+.+-.. ...++|.+|+.+-+....+. ...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~----------~~~~~vtAP~~~a~~~l~~~----~~~- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI----------AGRAIVTAPAKASTDVLAQF----AGE- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS----------SSCEEEECSSCCSCHHHHHH----HGG-
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH----------HhCcEEECCCHHHHHHHHHH----hhC-
Confidence 689999999988876 3457999999999996544443322 12369999998866644322 111
Q ss_pred CCeEEEEeCCcchHHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccCcHHHHHHHHHHCCccc
Q psy12983 496 HHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575 (838)
Q Consensus 496 ~~~v~~l~gg~~~~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~ 575 (838)
.|-+..|+.+.. . ....+++|||||=.+. .+.+..++.. .
T Consensus 240 ------------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~~----~ 279 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVSR----F 279 (671)
T ss_dssp ------------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHTT----S
T ss_pred ------------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHhh----C
Confidence 133445655432 1 2347899999998764 3455555553 2
Q ss_pred eEEEEeeeccc
Q psy12983 576 QTMLFSATTTA 586 (838)
Q Consensus 576 qil~lSAT~~~ 586 (838)
..++||.|...
T Consensus 280 ~~v~~~tTv~G 290 (671)
T 2zpa_A 280 PRTLLTTTVQG 290 (671)
T ss_dssp SEEEEEEEBSS
T ss_pred CeEEEEecCCc
Confidence 34777888654
No 186
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.54 E-value=0.025 Score=54.41 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=46.6
Q ss_pred ccceEEEEECCc-chHHHHHHHHHhhCCCCCeeeeHHhh---------hhcCCceeEEeeCCCChh
Q psy12983 217 AGLEQGYVVCPS-EKRFLLLFTFLKKNHIGEIVAWHVLL---------LQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 217 ~~i~q~~v~v~~-~~K~~~L~~ll~~~~~~~~iVF~~~~---------l~~~~~~~~~~hg~~~~~ 272 (838)
++|+|+|+.++. ++|...|..+++....+++|||+++. |...++.+..+||+++..
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 67 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 67 (170)
Confidence 358999999998 89999999999887778999997654 355678999999998654
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.19 E-value=0.15 Score=51.18 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.++.+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997653
No 188
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.08 E-value=0.25 Score=58.83 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
++++++++.|+++ +..++++.+. .++.+.++| +.+.++...++.++..+ + .
T Consensus 119 ~~~~~Iiv~Tpe~------l~~~~~~~~~-~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~---------------~-~ 175 (715)
T 2va8_A 119 LKNYDIIITTYEK------LDSLWRHRPE-WLNEVNYFVLDELHYLNDPERGPVVESVTIRA---------------K-R 175 (715)
T ss_dssp GGGCSEEEECHHH------HHHHHHHCCG-GGGGEEEEEECSGGGGGCTTTHHHHHHHHHHH---------------H-T
T ss_pred cCCCCEEEEcHHH------HHHHHhCChh-HhhccCEEEEechhhcCCcccchHHHHHHHhc---------------c-c
Confidence 3578899999988 6666655432 256666665 22223333444444444 2 5
Q ss_pred ceEEEEEEeCChHHHHHHHHh
Q psy12983 177 RQTMLFSATTTAKTETLTKLA 197 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~ 197 (838)
.|.+++|||++. .++++..+
T Consensus 176 ~~ii~lSATl~n-~~~~~~~l 195 (715)
T 2va8_A 176 RNLLALSATISN-YKQIAKWL 195 (715)
T ss_dssp SEEEEEESCCTT-HHHHHHHH
T ss_pred CcEEEEcCCCCC-HHHHHHHh
Confidence 899999999975 46666543
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.03 E-value=0.26 Score=48.29 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.8
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999998653
No 190
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.87 E-value=0.13 Score=59.05 Aligned_cols=99 Identities=6% Similarity=0.002 Sum_probs=53.3
Q ss_pred CCccCchhhHHHHHHHHHhc--ccc---------cCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVAE--LTV---------YPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||..+-.-|..-+.+...+ +.| ..+...+...|+++++||++ ++++++......+..+.++|
T Consensus 62 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~------l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 62 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQI------LVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHH------HHHHHHSSSCCCSTTCSEEE
T ss_pred eCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHH------HHHHHHhCcccccccCCEEE
Confidence 45555555577777666542 222 22222344678999999999 88887765544566677666
Q ss_pred ------eeccccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCC
Q psy12983 142 ------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTT 187 (838)
Q Consensus 142 ------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~ 187 (838)
+.+.+. +..++.....+ .+.. .+...|+++||||.+
T Consensus 136 iDEah~~~~~~~---~~~~~~~~~~~-----~~~~--~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 136 FDECHNTTGNHP---YNVLMTRYLEQ-----KFNS--ASQLPQILGLTASVG 177 (556)
T ss_dssp EETGGGCSTTSH---HHHHHHHHHHH-----HHCC-----CCEEEEEESCCC
T ss_pred EECCcccCCcch---HHHHHHHHHHh-----hhcc--cCCCCeEEEEeCCcc
Confidence 333322 22222121100 0000 023579999999984
No 191
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.83 E-value=0.33 Score=52.71 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.5
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999998653
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.52 E-value=1.3 Score=49.18 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.-+++.|++|+|||..+.-.+... . ..+.+++++. |.+.-+.+ .++.+....++.+.....+.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l-~------~~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~~~~~~~d---- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYF-Q------KRGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVFGNPQEKD---- 166 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-H------TTTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEECCTTCCC----
T ss_pred eEEEEECcCCCCHHHHHHHHHHHH-H------HCCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEEecCCCCC----
Confidence 357899999999998765444332 2 2355666655 45554433 334444444544332211111
Q ss_pred HHHHhcCCcEEEcChHHHH-HHHhcCcccccCCceEEEEeCCCccccc-CcHHHHHHHHHHCCccceEEEEeeecccchH
Q psy12983 512 AQKLAKGINIIVATPGRLL-DHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNLLPKRRQTMLFSATTTAKTE 589 (838)
Q Consensus 512 ~~~l~~~~~IvV~Tp~~l~-~~l~~~~~~~~~~l~lvViDEah~l~~~-gf~~~~~~il~~l~~~~qil~lSAT~~~~~~ 589 (838)
|..+. +.+.. .....++++|||.+=+.... ....++..+.....+..-++.+.||......
T Consensus 167 --------------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 --------------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp --------------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred --------------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 22211 11111 11134789999998654322 1344555666666666678888888765544
Q ss_pred HHHHH
Q psy12983 590 TLTKL 594 (838)
Q Consensus 590 ~l~~~ 594 (838)
.....
T Consensus 230 ~~a~~ 234 (443)
T 3dm5_A 230 NQALA 234 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 193
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.44 E-value=0.047 Score=61.38 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=44.7
Q ss_pred CCCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh
Q psy12983 174 AERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL 253 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~ 253 (838)
+.+.|+++||||+|.++..+ +.. ++..+.+.. ..+. .++ ..+ ...+.+ ..+++||||++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~-~~~~~~~~~----~~p~--~~~------~~~----~~~l~~-~~~~~lVF~~s 197 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQS-NSPIEDIER----EIPE--RSW------NTG----FDWITD-YQGKTVWFVPS 197 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCC-SSCEEEEEC----CCCS--SCC------SSS----CHHHHH-CCSCEEEECSS
T ss_pred CCCceEEEEccCCCccchhh---hcC-CCceEecCc----cCCc--hhh------HHH----HHHHHh-CCCCEEEEcCC
Confidence 34689999999999866442 333 555543321 0110 111 011 122333 25689999654
Q ss_pred ---------hhhcCCceeEEeeCCCC
Q psy12983 254 ---------LLQVIKIKVQTRIGKED 270 (838)
Q Consensus 254 ---------~l~~~~~~~~~~hg~~~ 270 (838)
.|+..++.+..+||++.
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~ 223 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF 223 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH
Confidence 45667899999999865
No 194
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.27 E-value=1.1 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 195
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.17 E-value=0.67 Score=48.85 Aligned_cols=40 Identities=13% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
.+..++||||+|.+... ....+..++...+.+..+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45689999999998653 23445555665555666666543
No 196
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.15 E-value=0.31 Score=48.54 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=46.6
Q ss_pred ceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhhcCCceeEEeeCCCChhh
Q psy12983 219 LEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQVIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 219 i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~~~~~~~~~~hg~~~~~~ 273 (838)
+.+.++.++.++|+..|..++.....+++|||+++ .+...++.+..+||+++.-+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGE 69 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 67888999999999999999998888999999644 34566899999999997654
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.68 E-value=2.6 Score=41.53 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.6
Q ss_pred CEEEEecCCCCchhhhH
Q psy12983 435 DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~ 451 (838)
.+++.||.|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 198
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.54 E-value=0.32 Score=57.27 Aligned_cols=89 Identities=17% Similarity=-0.011 Sum_probs=48.0
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHH-HHHHhh-CCCCCeeeeHH
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLL-FTFLKK-NHIGEIVAWHV 252 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L-~~ll~~-~~~~~~iVF~~ 252 (838)
..+|+++||||.++.....+ . .... ........... . +...+...+...| ..+... ....++|||++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~-~~~~--~~~r~~~l~~p---~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~ 453 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----D-EMVE--QIIRPTGLLDP---L-IDVRPIEGQIDDLIGEIQARIERNERVLVTTL 453 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----S-SCEE--ECCCTTCCCCC---E-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECS
T ss_pred cCCCEEEEecCCChhHHHhh----h-Ceee--eeecccCCCCC---e-EEEecccchHHHHHHHHHHHHhcCCeEEEEEC
Confidence 46899999999987653321 1 2221 11111000111 1 1112223334333 333332 24568999953
Q ss_pred ---------hhhhcCCceeEEeeCCCChhhh
Q psy12983 253 ---------LLLQVIKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 253 ---------~~l~~~~~~~~~~hg~~~~~~~ 274 (838)
..|...|+++..+||+++..+.
T Consensus 454 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R 484 (661)
T 2d7d_A 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLER 484 (661)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEEEeCCCCHHHH
Confidence 3456779999999999876654
No 199
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.46 E-value=0.38 Score=57.58 Aligned_cols=81 Identities=6% Similarity=0.085 Sum_probs=67.4
Q ss_pred CCCeEEEEecchhhHHHHHHHhhc----CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEcc-CCccCCCCCCccEEE
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNY----IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD-VAARGLDIPAVDWIV 715 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~----~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~-~~~~GiDip~v~~VI 715 (838)
.+.+++|.++++.-+...++.+++ .++++..+||+++..+|..+++.+.+|+.+|+|+|. .+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 457999999999888877766654 478999999999999999999999999999999996 344567888999998
Q ss_pred EeCCCC
Q psy12983 716 QYDPPD 721 (838)
Q Consensus 716 ~~d~p~ 721 (838)
......
T Consensus 496 IDEaHr 501 (780)
T 1gm5_A 496 IDEQHR 501 (780)
T ss_dssp EESCCC
T ss_pred ecccch
Confidence 765544
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.45 E-value=0.21 Score=52.52 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
.++++.||+|+|||..+-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999987643
No 201
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.29 E-value=0.3 Score=58.10 Aligned_cols=75 Identities=8% Similarity=0.080 Sum_probs=48.1
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
++.+++++.||++ +..++++.+. .++.+.++| +.+.++...++.++..+.. + .+.
T Consensus 112 ~~~~~Iiv~Tpe~------l~~~l~~~~~-~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~----------~--~~~ 172 (702)
T 2p6r_A 112 LGDCDIIVTTSEK------ADSLIRNRAS-WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR----------M--NKA 172 (702)
T ss_dssp STTCSEEEEEHHH------HHHHHHTTCS-GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH----------H--CTT
T ss_pred ccCCCEEEECHHH------HHHHHHcChh-HHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh----------c--CcC
Confidence 3588999999998 6666666443 356677666 3333455555555444411 0 246
Q ss_pred ceEEEEEEeCChHHHHHHHHh
Q psy12983 177 RQTMLFSATTTAKTETLTKLA 197 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~ 197 (838)
.|.+++|||++. .+++++.+
T Consensus 173 ~~ii~lSATl~n-~~~~~~~l 192 (702)
T 2p6r_A 173 LRVIGLSATAPN-VTEIAEWL 192 (702)
T ss_dssp CEEEEEECCCTT-HHHHHHHT
T ss_pred ceEEEECCCcCC-HHHHHHHh
Confidence 899999999985 56776643
No 202
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.26 E-value=0.3 Score=58.23 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=45.8
Q ss_pred ccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe------eeccccccccccceEeeccccccccccCcCCCCCC
Q psy12983 103 LSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAER 176 (838)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~ 176 (838)
...+++++.||++ +..++++.+. .++.+.++| +.+.++...++.++..+ ++.
T Consensus 112 ~~~~~Iiv~Tpe~------l~~~~~~~~~-~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l---------------~~~ 169 (720)
T 2zj8_A 112 LGKYDIIIATAEK------FDSLLRHGSS-WIKDVKILVADEIHLIGSRDRGATLEVILAHM---------------LGK 169 (720)
T ss_dssp GGGCSEEEECHHH------HHHHHHHTCT-TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHH---------------BTT
T ss_pred cCCCCEEEECHHH------HHHHHHcChh-hhhcCCEEEEECCcccCCCcccHHHHHHHHHh---------------hcC
Confidence 4578899999987 5555554332 255666665 32334555555555555 346
Q ss_pred ceEEEEEEeCChHHHHHHHHh
Q psy12983 177 RQTMLFSATTTAKTETLTKLA 197 (838)
Q Consensus 177 rQtlLFSAT~~~~v~~la~~~ 197 (838)
.|++++|||++. .++++..+
T Consensus 170 ~~ii~lSATl~n-~~~~~~~l 189 (720)
T 2zj8_A 170 AQIIGLSATIGN-PEELAEWL 189 (720)
T ss_dssp BEEEEEECCCSC-HHHHHHHT
T ss_pred CeEEEEcCCcCC-HHHHHHHh
Confidence 899999999985 46666543
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.73 E-value=0.45 Score=50.62 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||..+-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998653
No 204
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.73 E-value=0.81 Score=47.37 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
..+.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999765
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.63 E-value=0.6 Score=49.12 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=24.9
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
+..+|||||+|.+.... ...+..++...+.+..+++.|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 36899999999986532 2334455555555666666553
No 206
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=1.4 Score=47.03 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=25.9
Q ss_pred CceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEee
Q psy12983 543 NLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582 (838)
Q Consensus 543 ~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSA 582 (838)
..++|++||+|.+... ....+..++...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4579999999998654 23455556666555666666543
No 207
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.51 E-value=0.55 Score=50.39 Aligned_cols=43 Identities=14% Similarity=0.378 Sum_probs=28.7
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
.+.+++|+||+|.+. ......+..++...+.+..+++.|..+.
T Consensus 133 ~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 456899999999954 3345566666766666666666665444
No 208
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.42 E-value=0.92 Score=49.08 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.5
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999765
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.25 E-value=1.4 Score=49.01 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=57.2
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-+++.|++|+|||..++-.+...... .+..++|+..--. ..|+..++......... ..+..+.-...+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~--~~l~~g~l~~~~ 269 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSLEMP-AAQLTLRMMCSEARIDM--NRVRLGQLTDRD 269 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEESSSC-HHHHHHHHHHHHTTCCT--TTCCGGGCCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEECCCC-HHHHHHHHHHHHcCCCH--HHHhCCCCCHHH
Confidence 34668999999999997665555544322 3556777764321 33444333322111111 001111111222
Q ss_pred HHHHh------cCCcEEEc-----ChHHHHHHHhcCcccccCCceEEEEeCCCccccc
Q psy12983 512 AQKLA------KGINIIVA-----TPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558 (838)
Q Consensus 512 ~~~l~------~~~~IvV~-----Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~ 558 (838)
+..+. ....+.+- |++.+...++... .-..+++||||..+.+...
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCC
Confidence 22221 12345553 3444444333211 1135899999999988643
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.24 E-value=1.3 Score=47.77 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
+..+++.||.|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 211
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.21 E-value=0.064 Score=60.43 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=42.3
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHhhCCCCCeeeeHHh-
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVL- 253 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~~~~~~~~iVF~~~- 253 (838)
+..|+++||||++.++..+... . .|+.. +.. . ++... ...+..++.+. .+++|||+++
T Consensus 142 ~~~~~il~SAT~~~~~~~~~~~--~-~pi~~-~~~--~-------------~~~~~-~~~~~~~l~~~-~~~~LVF~~s~ 200 (459)
T 2z83_A 142 GEAAAIFMTATPPGTTDPFPDS--N-APIHD-LQD--E-------------IPDRA-WSSGYEWITEY-AGKTVWFVASV 200 (459)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--S-SCEEE-EEC--C-------------CCSSC-CSSCCHHHHHC-CSCEEEECSCH
T ss_pred CCccEEEEEcCCCcchhhhccC--C-CCeEE-ecc--c-------------CCcch-hHHHHHHHHhc-CCCEEEEeCCh
Confidence 5789999999999876544321 2 45432 110 0 01100 00111223333 5789999654
Q ss_pred --------hhhcCCceeEEeeCC
Q psy12983 254 --------LLQVIKIKVQTRIGK 268 (838)
Q Consensus 254 --------~l~~~~~~~~~~hg~ 268 (838)
.|+..++.+..+||+
T Consensus 201 ~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 201 KMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTT
T ss_pred HHHHHHHHHHHhcCCcEEecCHH
Confidence 456679999999996
No 212
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.95 E-value=1.1 Score=47.78 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.||+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997653
No 213
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.75 E-value=1.1 Score=43.97 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=71.3
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH-HHHHHHHHHHHHhhhcCCeEEEEe-CCc---c
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE-LSMQTFGVLKELMKYHHHTYGLIM-GGA---S 507 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~-La~Q~~~~l~~~~~~~~~~v~~l~-gg~---~ 507 (838)
...+++..+.|.|||.+++-.++.++. .|.+|+|+.-.+. .-..-.+.++. +++.+...- +.. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g-------~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG-------HGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH-------TTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCC
Confidence 357999999999999999888888873 4788888843221 00000011112 122222111 111 1
Q ss_pred h-HHHHHHHhcCCcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCcccccC--cHHHHHHHHHHCCccceEEEEeeec
Q psy12983 508 R-QAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIG--FEEDMKQIVNLLPKRRQTMLFSATT 584 (838)
Q Consensus 508 ~-~~~~~~l~~~~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~l~~~g--f~~~~~~il~~l~~~~qil~lSAT~ 584 (838)
. ..+.... ...+..... .+.-..+++||+||+-.....+ -.+.+..++...+....+|+.+--+
T Consensus 97 ~~~~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 97 NREADTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GHHHHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CcHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1 1111100 111111111 1112568999999996654444 2356667777777777777766666
Q ss_pred ccchHHH
Q psy12983 585 TAKTETL 591 (838)
Q Consensus 585 ~~~~~~l 591 (838)
++...++
T Consensus 164 p~~l~e~ 170 (196)
T 1g5t_A 164 HRDILDL 170 (196)
T ss_dssp CHHHHHH
T ss_pred cHHHHHh
Confidence 6544443
No 214
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.73 E-value=0.26 Score=59.50 Aligned_cols=102 Identities=6% Similarity=-0.041 Sum_probs=54.1
Q ss_pred CCccCchhhHHHHHHHHHh-----------cccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVA-----------ELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||..+-.-|..-+.+... |.....+...+...++++++|+++ +++++++.....+..+.++|
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~------l~~~l~~~~~~~~~~~~~iV 376 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQI------LVNSFEDGTLTSLSIFTLMI 376 (797)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHH------HHHHHHSSSCCCGGGCSEEE
T ss_pred eCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHH------HHHHHHhccccccccCCEEE
Confidence 4555444556666666544 332233333455789999999999 88888765544566777665
Q ss_pred --eecc-ccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCC
Q psy12983 142 --VLNQ-GLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTT 187 (838)
Q Consensus 142 --~l~~-g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~ 187 (838)
..+. +....+..++..+..+ .+.. .....|++++|||.+
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~-----~~~~--~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 377 FDECHNTTGNHPYNVLMTRYLEQ-----KFNS--ASQLPQILGLTASVG 418 (797)
T ss_dssp ETTGGGCSTTSHHHHHHHHHHHH-----HHTT--CCCCCEEEEEESCCC
T ss_pred EECccccCCCccHHHHHHHHHHH-----hhcc--CCCCCeEEEEcCCcc
Confidence 1111 1111233333222110 0000 023579999999985
No 215
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.57 E-value=1.5 Score=48.96 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=26.8
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.|.-+++.|++|+|||..++-.+...... .+..++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 45678999999999997665555544322 2456777764
No 216
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=88.19 E-value=0.4 Score=58.92 Aligned_cols=102 Identities=6% Similarity=-0.035 Sum_probs=54.0
Q ss_pred CCccCchhhHHHHHHHHHh-----------cccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCCCccccccchhe
Q psy12983 73 VPTLNVPSIWESLLDRIVA-----------ELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPF 141 (838)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lv 141 (838)
+||..+-.-|..-+.+... |.....+...+...++++++|+++ +++++++.....+..+.++|
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~------L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQI------LVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHH------HHHHHHSSSCCCGGGCSEEE
T ss_pred eCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHH------HHHHHHcCccccccCCCEEE
Confidence 3554444456666655543 333334444556788999999999 88888765544566677665
Q ss_pred e--ecc-ccccccccceEeeccccccccccCcCCCCCCceEEEEEEeCC
Q psy12983 142 V--LNQ-GLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTT 187 (838)
Q Consensus 142 ~--l~~-g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQtlLFSAT~~ 187 (838)
+ .+. .....+..++..+... .+.. .....|++++|||.+
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~-----~~~~--~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 377 FDECHNTTGNHPYNVLMTRYLEQ-----KFNS--ASQLPQILGLTASVG 418 (936)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHH-----HHTT--CSCCCEEEEEESCCC
T ss_pred EECccccCCCccHHHHHHHHHHH-----hhcc--CCCcCeEEEecCCcc
Confidence 1 111 1111233333222110 0000 023579999999985
No 217
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.04 E-value=0.6 Score=55.02 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=47.3
Q ss_pred CCceEEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceEEEEECCcchHHHHHHHHHh-h-CCCCCeeeeHH
Q psy12983 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLK-K-NHIGEIVAWHV 252 (838)
Q Consensus 175 ~~rQtlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q~~v~v~~~~K~~~L~~ll~-~-~~~~~~iVF~~ 252 (838)
..+|+++||||.+......+ . . .+............ .+...+...+...|...+. . ....++|||++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~----~-~--~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~ 447 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHS----G-R--VVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVL 447 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHC----S-E--EEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEecCCCHHHHHhh----h-C--eeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEEC
Confidence 46899999999987643221 1 1 11111111000010 1111222334444433333 2 24568999953
Q ss_pred ---------hhhhcCCceeEEeeCCCChhhh
Q psy12983 253 ---------LLLQVIKIKVQTRIGKEDFVTS 274 (838)
Q Consensus 253 ---------~~l~~~~~~~~~~hg~~~~~~~ 274 (838)
..|...|+++..+||+++..+.
T Consensus 448 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R 478 (664)
T 1c4o_A 448 TVRMAEELTSFLVEHGIRARYLHHELDAFKR 478 (664)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCceeecCCCCHHHH
Confidence 3457779999999999876653
No 218
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.81 E-value=1.9 Score=46.29 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=23.5
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
....+|||||+|.+.... ...+...+...+.+..+++.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999986432 334444455444445455544
No 219
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.61 E-value=0.7 Score=51.31 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.3
Q ss_pred chHHHHHHHHHhh----CCCCCeeeeH---------HhhhhcCCceeEEeeC
Q psy12983 229 EKRFLLLFTFLKK----NHIGEIVAWH---------VLLLQVIKIKVQTRIG 267 (838)
Q Consensus 229 ~~K~~~L~~ll~~----~~~~~~iVF~---------~~~l~~~~~~~~~~hg 267 (838)
..|...|..++.. ....++|||+ ...+...++.+..+||
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 3466667777765 5678999995 3445667999999999
No 220
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.52 E-value=0.9 Score=48.29 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997653
No 221
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.52 E-value=2.4 Score=42.93 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997654
No 222
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.97 E-value=1.1 Score=47.22 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=15.7
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.||+|+|||..+.
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 223
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.91 E-value=1.2 Score=48.12 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.8
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998754
No 224
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.82 E-value=0.86 Score=50.87 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999997653
No 225
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.73 E-value=1.3 Score=47.32 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
...+++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999998654 3445566666666666666554
No 226
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.62 E-value=1.3 Score=48.32 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997653
No 227
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.41 E-value=1 Score=47.43 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
.+.+++||||+|++.... .+.+...+..-+++..+++.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999986543 234445555545555555554
No 228
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.40 E-value=4.3 Score=44.34 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||.|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 4789999999999998653
No 229
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.29 E-value=1.1 Score=47.99 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=56.6
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAE 511 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~ 511 (838)
.|.-+++.|++|+|||..++-.+..... .+..++|+..-- -..|+..++.......+. .-+..+.-...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~--~~l~~g~Ls~~e 114 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFSLEM-SAEQLALRALSDLTSINM--HDLESGRLDDDQ 114 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEESSS-CHHHHHHHHHHHHHCCCH--HHHHHTCCCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCCC-CHHHHHHHHHHHhhCCCH--HHHhcCCCCHHH
Confidence 4566899999999999766555554432 356788876432 233444443322111110 000011111222
Q ss_pred HHHHh------cCCcEEE-cC----hHHHHHHHhcCcccccC-CceEEEEeCCCcccc
Q psy12983 512 AQKLA------KGINIIV-AT----PGRLLDHLQNTPEFLYK-NLQCLIIDEADRILD 557 (838)
Q Consensus 512 ~~~l~------~~~~IvV-~T----p~~l~~~l~~~~~~~~~-~l~lvViDEah~l~~ 557 (838)
+..+. ...++.| -+ +..+...++... .-. .+++||||-.+.+..
T Consensus 115 ~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~--~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 115 WENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK--SQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH--HHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH--HhcCCCCEEEEechHHhcC
Confidence 22221 1234544 33 344443333211 112 689999999998754
No 230
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.00 E-value=1.9 Score=49.02 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCceEEEEeCCCcccccC--cHHHHHHHHHHCCccceEEEEeeecc
Q psy12983 542 KNLQCLIIDEADRILDIG--FEEDMKQIVNLLPKRRQTMLFSATTT 585 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~g--f~~~~~~il~~l~~~~qil~lSAT~~ 585 (838)
..-.+|||||+|.+.... ....+..++.. .+..+++.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 345789999999987643 23444455544 2456777777654
No 231
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=85.77 E-value=0.056 Score=60.96 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=31.8
Q ss_pred CcchHHHHHHHHHhhCCCCCeeeeHHhhhhcC----CceeEEeeCCCChh
Q psy12983 227 PSEKRFLLLFTFLKKNHIGEIVAWHVLLLQVI----KIKVQTRIGKEDFV 272 (838)
Q Consensus 227 ~~~~K~~~L~~ll~~~~~~~~iVF~~~~l~~~----~~~~~~~hg~~~~~ 272 (838)
....|...|..++......++|||++..-... .+.+..+||+++..
T Consensus 332 ~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~ 381 (472)
T 2fwr_A 332 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSRE 381 (472)
T ss_dssp SCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSH
T ss_pred cChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHH
Confidence 34567888888998877889999975543111 12366799998654
No 232
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.46 E-value=0.2 Score=56.96 Aligned_cols=42 Identities=19% Similarity=0.031 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhC---CCCCeeeeH--------HhhhhcCCceeEEeeCCCChh
Q psy12983 231 RFLLLFTFLKKN---HIGEIVAWH--------VLLLQVIKIKVQTRIGKEDFV 272 (838)
Q Consensus 231 K~~~L~~ll~~~---~~~~~iVF~--------~~~l~~~~~~~~~~hg~~~~~ 272 (838)
|...+..++... ...+.+||+ ...+...+..+..+||+++..
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~ 384 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTE 384 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHH
Confidence 344455555433 345567883 344555667999999998754
No 233
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.08 E-value=0.51 Score=49.58 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.8
Q ss_pred CEEEEecCCCCchhhhH
Q psy12983 435 DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~ 451 (838)
.+++.||.|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997653
No 234
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.20 E-value=3.3 Score=43.76 Aligned_cols=51 Identities=18% Similarity=0.014 Sum_probs=31.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
.|.-+++.|++|+|||..++-.+..... .+..++|+.-- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 4567999999999999766555544432 24678887643 223444444433
No 235
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.37 E-value=2.9 Score=45.54 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCEEE--EecCCCCchhhhH
Q psy12983 434 RDLVG--SAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv--~apTGsGKTl~~~ 451 (838)
..+++ .||.|+|||..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45788 8999999997653
No 236
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=83.04 E-value=2.5 Score=53.02 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=66.6
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhc----CCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEc-cCCccCCCCCCccEE
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNY----IDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT-DVAARGLDIPAVDWI 714 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~----~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT-~~~~~GiDip~v~~V 714 (838)
..+.+++|.++|+.-+...++.+++ .++.+..++|..+..++..+++.+.+|+.+|+|+| ..+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 4567999999999888887777654 36789999999999999999999999999999999 455566888888888
Q ss_pred EEeCC
Q psy12983 715 VQYDP 719 (838)
Q Consensus 715 I~~d~ 719 (838)
|.-..
T Consensus 730 IiDEa 734 (1151)
T 2eyq_A 730 IVDEE 734 (1151)
T ss_dssp EEESG
T ss_pred EEech
Confidence 86443
No 237
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.83 E-value=1.8 Score=48.94 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=26.7
Q ss_pred ceEEEEeCCCcccccC----------cHHHHHHHHHHCCccceEEEEeeeccc
Q psy12983 544 LQCLIIDEADRILDIG----------FEEDMKQIVNLLPKRRQTMLFSATTTA 586 (838)
Q Consensus 544 l~lvViDEah~l~~~g----------f~~~~~~il~~l~~~~qil~lSAT~~~ 586 (838)
-.+|+|||+|.+.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999876531 123344445545555667777777554
No 238
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.50 E-value=21 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=22.9
Q ss_pred eEEEEeCCCcccc---cCcHHHHHHHHHHCCccceEEEEe
Q psy12983 545 QCLIIDEADRILD---IGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 545 ~lvViDEah~l~~---~gf~~~~~~il~~l~~~~qil~lS 581 (838)
-+|||||+|.+.. ..+...+..+.... .+..+++.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 4899999999864 34666666666553 244444433
No 239
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.95 E-value=2 Score=47.87 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997653
No 240
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.75 E-value=7.8 Score=42.56 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||.|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 3789999999999998653
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.51 E-value=4.5 Score=40.25 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=18.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
.|.-+.+.||+|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467799999999999986554443
No 242
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=79.87 E-value=3.1 Score=48.78 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=60.1
Q ss_pred EEEEEEeCChHHHHHHHHhccCCCEEEEEecCCcccccccceE-EEEECCcchHHHHHHHHHhhC--CCCCeeeeH----
Q psy12983 179 TMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQ-GYVVCPSEKRFLLLFTFLKKN--HIGEIVAWH---- 251 (838)
Q Consensus 179 tlLFSAT~~~~v~~la~~~l~~~p~~i~i~~~~~~~~~~~i~q-~~v~v~~~~K~~~L~~ll~~~--~~~~~iVF~---- 251 (838)
...+|+|...+...+.+.|-- ..+.+ . ...+...+.+ ..+.+..++|+..+...+... ...++|||+
T Consensus 412 L~GMTGTa~te~~Ef~~iY~l---~vv~I--P-tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 412 LAGMTGTAKTEESEFVQVYGM---EVVVI--P-THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEESSCGGGHHHHHHHSCC---CEEEC--C-CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HeEECCCCchHHHHHHHHhCC---eEEEE--C-CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 447999999999999888843 23223 1 2233334444 356678888998888887653 456899995
Q ss_pred -----HhhhhcCCceeEEeeCCC
Q psy12983 252 -----VLLLQVIKIKVQTRIGKE 269 (838)
Q Consensus 252 -----~~~l~~~~~~~~~~hg~~ 269 (838)
+..|...|+++..+||+.
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq 508 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKY 508 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCc
Confidence 445677899999999983
No 243
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.83 E-value=11 Score=41.65 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.1
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||.|+|||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999998653
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.43 E-value=1.4 Score=40.63 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=17.5
Q ss_pred HcCCCEEEEecCCCCchhhhH
Q psy12983 431 LEGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~~ 451 (838)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 356789999999999997653
No 245
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.10 E-value=15 Score=37.61 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.3
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
+..|.-+++.||.|+|||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899999999999986554443
No 246
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.04 E-value=4.3 Score=45.11 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=27.2
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.|.-+++.|++|+|||..++-.+..... .+..++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-------~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-------TTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-------cCCEEEEEEC
Confidence 4466899999999999876655555432 2567888764
No 247
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.45 E-value=3.5 Score=45.81 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+|+.||.|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 4789999999999998653
No 248
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=76.34 E-value=1.2 Score=52.31 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=40.9
Q ss_pred CeeeeCCCcccchhhhhhhccCCCCc--cccccchhe------eeccccccccccceEeeccccccccccCcCCCCCCce
Q psy12983 107 SKLTHNDGQSHLEEHKLTHNDATPLL--VSVSIFCPF------VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQ 178 (838)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~lv------~l~~g~~~~~~~i~~~~~d~~dl~~i~~~l~~p~~rQ 178 (838)
++++.++|+ +.+|+..|+.. ....+.++| +++.+|...++.++..+ + ++..|
T Consensus 214 ~~iv~TpGr------~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l-------------~-~~~i~ 273 (677)
T 3rc3_A 214 RVTVQPNGK------QASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGL-------------C-AEEVH 273 (677)
T ss_dssp EECCSTTCC------CCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHC-------------C-EEEEE
T ss_pred eEEecCCCc------ccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHcc-------------C-ccceE
Confidence 344555665 45555444421 123445555 55666777666666555 1 25689
Q ss_pred EEEEEEeCChHHHHHHHHh
Q psy12983 179 TMLFSATTTAKTETLTKLA 197 (838)
Q Consensus 179 tlLFSAT~~~~v~~la~~~ 197 (838)
++++|||. +.++.++...
T Consensus 274 il~~SAT~-~~i~~l~~~~ 291 (677)
T 3rc3_A 274 LCGEPAAI-DLVMELMYTT 291 (677)
T ss_dssp EEECGGGH-HHHHHHHHHH
T ss_pred EEeccchH-HHHHHHHHhc
Confidence 99999995 4566666544
No 249
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=76.32 E-value=0.96 Score=53.49 Aligned_cols=63 Identities=2% Similarity=-0.192 Sum_probs=34.9
Q ss_pred CCccCchhhH-HHHHHHHHhc----------ccccCCCcccccCCCeeeeCCCcccchhhhhhhccCCC-----Cccccc
Q psy12983 73 VPTLNVPSIW-ESLLDRIVAE----------LTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATP-----LLVSVS 136 (838)
Q Consensus 73 ~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~ 136 (838)
+|+..+-.-| ..-+.+..++ .....+...+...++++++|+++ +++++.+.. .+.+..
T Consensus 63 ~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~------L~~~l~~~~~~~~~~~~~~~ 136 (699)
T 4gl2_A 63 VNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQI------LENSLLNLENGEDAGVQLSD 136 (699)
T ss_dssp ESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHH------HHHHTC--------CCCGGG
T ss_pred ECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHH------HHHHHhccccccccceeccc
Confidence 4555554556 6666665443 22222324455788999999998 777765332 234555
Q ss_pred cchhe
Q psy12983 137 IFCPF 141 (838)
Q Consensus 137 ~~~lv 141 (838)
+.++|
T Consensus 137 ~~lvV 141 (699)
T 4gl2_A 137 FSLII 141 (699)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 55554
No 250
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.01 E-value=3 Score=47.68 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 251
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.46 E-value=11 Score=42.11 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+.+++.||+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998653
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.40 E-value=5.2 Score=39.97 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=19.1
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHH
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
+..|.-+.+.||+|+|||..+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3467889999999999997654333
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.34 E-value=4.5 Score=49.01 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=16.9
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
.++++.||+|+|||..+-..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 579999999999997654443
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.25 E-value=4.7 Score=42.64 Aligned_cols=46 Identities=15% Similarity=-0.044 Sum_probs=27.1
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
.|.-+++.|++|+|||..+...+........+ ...+..++|+.--.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~-gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEK-GGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGG-TCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhccccc-CCCCCeEEEEECCC
Confidence 35679999999999997655444432111000 01145778876543
No 255
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.71 E-value=6.2 Score=47.10 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=15.8
Q ss_pred CEEEEecCCCCchhhhHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp 453 (838)
.+++.||+|+|||..+-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4999999999999876433
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.85 E-value=3.1 Score=54.46 Aligned_cols=47 Identities=26% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHc------CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHH
Q psy12983 427 IPPLLE------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTREL 480 (838)
Q Consensus 427 i~~i~~------~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~L 480 (838)
++.++. ++.+++.+|+|+|||..+...+.+.. ..+.+++|+..--.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-------HcCCcEEEEEccccc
Confidence 555555 57899999999999998766655543 346778888765433
No 257
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.03 E-value=4.1 Score=42.84 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
++++++.||+|+|||..+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999998764433
No 258
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=71.73 E-value=6 Score=44.42 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=39.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
.+....+.+-||||||++..-.+ + ..+..+|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~---------~~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-E---------RHAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-H---------HSSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-H---------HhCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678899999999997532221 1 1245689999999999999999998754
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.32 E-value=6.8 Score=46.81 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.+++.||.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999764
No 260
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.87 E-value=3.3 Score=44.51 Aligned_cols=41 Identities=24% Similarity=0.165 Sum_probs=26.6
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.|.-++|.||.|+|||..+.-.+.... . .+..++|+..-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~-~------~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ-K------MGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH-H------TTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h------cCCeEEEEecccc
Confidence 356789999999999976544443322 2 3456778765443
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=70.60 E-value=3 Score=43.98 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=29.4
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELS 481 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La 481 (838)
-+++.+|.|+|||..++-.+...... ..+..++|+..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-----g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-----YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-----CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEeccchhh
Confidence 57899999999998766555554322 2366788888755553
No 262
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.81 E-value=16 Score=43.53 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.1
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
+.++++.||+|+|||..+-..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHH
Confidence 468999999999999865433
No 263
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.76 E-value=5.3 Score=39.36 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCCCchhhh
Q psy12983 416 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 416 ~~~~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~ 450 (838)
+..-+.-|..++..+..|.-+.+.||.|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33445667788888888999999999999999754
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=67.44 E-value=34 Score=35.40 Aligned_cols=23 Identities=26% Similarity=0.085 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCCCchhhhHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
.++-+.+.++.|+|||..+...+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567788999999997654443
No 265
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.23 E-value=5.1 Score=45.35 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHCCCCCCcHHHHHHHHH-HHcCCCEEEEecCCCCchhh
Q psy12983 411 IADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 411 l~~~g~~~~~~~Q~~ai~~-i~~~~dvlv~apTGsGKTl~ 449 (838)
+.++|. +++.+..-+.. +..|..+++.||||||||..
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 334553 45555555544 45678899999999999974
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.19 E-value=53 Score=34.18 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
++-+.+.|++|+|||......+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4457899999999998654443
No 267
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.28 E-value=4.6 Score=44.61 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=31.2
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSM 482 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~ 482 (838)
...+++|.|+||+|||... ..++..+.. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH------CCCcEEEEeCCCchhH
Confidence 3578999999999999874 333433333 3567888888877754
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=65.20 E-value=3.9 Score=40.79 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=30.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVL 488 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l 488 (838)
.|.-+++.||+|+|||..+...+..... .+..++++.-.. -..++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-------~~~~v~~~~~e~-~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-------MGEPGIYVALEE-HPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSS-CHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEccC-CHHHHHHHH
Confidence 4678899999999999875544444432 245677766432 234444443
No 269
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=63.98 E-value=4.3 Score=39.02 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHcC--CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHH
Q psy12983 420 TEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQ 483 (838)
Q Consensus 420 ~~~Q~~ai~~i~~~--~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q 483 (838)
.+-|..++..++.. +-.++.++-|++||...+.-++..- + ..|.++.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-~-----~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-R-----EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-H-----HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-H-----hcCeEEEEEcCchHHHHH
Confidence 46688899888654 4578899999999987533333322 2 468999999999765443
No 270
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.76 E-value=6.9 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHc--CCCEEEEecCCCCchhh
Q psy12983 420 TEIQARTIPPLLE--GRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 420 ~~~Q~~ai~~i~~--~~dvlv~apTGsGKTl~ 449 (838)
.+-+..++..+.. +.-+++.||||||||..
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3445555555443 45689999999999975
No 271
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=63.56 E-value=11 Score=42.36 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=26.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.|.-++|.|++|+|||..++-.+.... . +.+..++|+.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-----~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-----AMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-----TSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-----hcCCcEEEEec
Confidence 456789999999999976655554432 1 12556777764
No 272
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=63.47 E-value=19 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.++.+++.||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999754
No 273
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.16 E-value=5 Score=44.31 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||.|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 4789999999999998653
No 274
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=60.33 E-value=54 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=33.5
Q ss_pred CceEEEEeCCCcccc-cCcHHHHHHHHHHCCccceEEEEeeecccchHHHHHH
Q psy12983 543 NLQCLIIDEADRILD-IGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKL 594 (838)
Q Consensus 543 ~l~lvViDEah~l~~-~gf~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~~~ 594 (838)
..+++++|.+-+... ......+..+...+.++..++.+.++...........
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 346788998876432 2255566666666667777888888877655444443
No 275
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=59.60 E-value=11 Score=47.23 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhcc-----CCCCCCcEEEEEcCCHHHHHHHHHHHHHHhh
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLK-----FMPRNGTGIIIISPTRELSMQTFGVLKELMK 493 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~-----~~~~~~~~vlvl~Pt~~La~Q~~~~l~~~~~ 493 (838)
...+|.|.-|||||.+...-++..+.... ..+-...++|+|+=|+.-|.++.+++.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 34599999999999987777777775321 1112346799999999999999988887654
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.05 E-value=66 Score=33.26 Aligned_cols=23 Identities=22% Similarity=0.028 Sum_probs=16.8
Q ss_pred CCCEEEEecCCCCchhhhHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l 455 (838)
++-+.+.+++|+|||..+...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577889999999987554443
No 277
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=58.23 E-value=6.2 Score=39.32 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=25.9
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
.|.-+++.|++|+|||..++-.+.+...+ .+..++|+.-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~------~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE------YGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH------HCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCCceeecc
Confidence 35678999999999997665444443322 2455677653
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=58.07 E-value=10 Score=41.34 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=24.8
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP 476 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P 476 (838)
|.-+.|.||.|+|||..+...++..+.... ....+..++|+.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~-~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLD-IGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcc-cCCCCCcEEEEeC
Confidence 467899999999999765433333221100 0012456777754
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.51 E-value=4.2 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976533
No 280
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=57.12 E-value=6 Score=40.21 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999764
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.08 E-value=4.4 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
++-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 466899999999999654
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=56.40 E-value=4.9 Score=38.93 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=18.0
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
.++.+++.|++|+|||..+-..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 5678999999999999875443
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=55.95 E-value=5.2 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999753
No 284
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=55.73 E-value=6.1 Score=42.56 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.6
Q ss_pred HHcCCCEEEEecCCCCchhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~ 449 (838)
+..|..+++.||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45789999999999999974
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.54 E-value=84 Score=34.37 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=16.9
Q ss_pred CCCEEEEecCCCCchhhhHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l 455 (838)
++-+.+.++.|+|||......+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44577889999999987554443
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.40 E-value=4.8 Score=42.37 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=14.5
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999997653
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.12 E-value=7.2 Score=41.88 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCCCchhh
Q psy12983 432 EGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~ 449 (838)
.+..+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455799999999999975
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=55.04 E-value=4.9 Score=42.21 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=14.5
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
-++|+||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478899999999976533
No 289
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.04 E-value=9.2 Score=37.47 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=17.8
Q ss_pred cCCCEEEEecCCCCchhhhHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
.|.-+++.||+|+|||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999997654433
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=54.24 E-value=8.4 Score=41.80 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=28.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.+.+++|.|+||+|||...-..+.+.. ..+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-------~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-------MQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-------TTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-------HCCCEEEEEeCCcC
Confidence 567899999999999976544433332 23556777777655
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=53.63 E-value=5.8 Score=37.69 Aligned_cols=22 Identities=23% Similarity=0.006 Sum_probs=17.5
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
.+.+++.|++|||||.++-..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998765443
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.52 E-value=4.6 Score=41.32 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.4
Q ss_pred HHcCCCEEEEecCCCCchhhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~ 450 (838)
+..|.-+.+.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999753
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=53.22 E-value=10 Score=40.60 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
...+++.||+|+|||.++-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999986533
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=53.04 E-value=19 Score=36.99 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.4
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
...+++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997653
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=52.59 E-value=6.2 Score=38.62 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4567899999999999754
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.41 E-value=20 Score=46.42 Aligned_cols=44 Identities=23% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQT 484 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~ 484 (838)
+-+.+.+|.|||||..++-.+.+.. ..+..++++.+-.+|-...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~-------~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH-------HTTCCEEEECTTSCCCHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH-------hcCCeEEEEecCCCCCHHH
Confidence 5689999999999988755554432 2477888888876665553
No 297
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=52.33 E-value=6.3 Score=44.44 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCchhhh
Q psy12983 424 ARTIPPLLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 424 ~~ai~~i~~~~dvlv~apTGsGKTl~~ 450 (838)
..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 444455667899999999999999754
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=52.12 E-value=5.9 Score=40.25 Aligned_cols=17 Identities=29% Similarity=0.006 Sum_probs=14.1
Q ss_pred CEEEEecCCCCchhhhH
Q psy12983 435 DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~ 451 (838)
-+++.||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999997653
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=51.90 E-value=5.4 Score=37.75 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=17.4
Q ss_pred cCCCEEEEecCCCCchhhhHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~l 452 (838)
.++.+++.|++|+|||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 457899999999999986543
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=51.78 E-value=6.1 Score=37.19 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
++-+++.|++|||||.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998653
No 301
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.64 E-value=5.9 Score=42.06 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.2
Q ss_pred HHcCCCEEEEecCCCCchhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~ 449 (838)
+..|+.+.+.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44688999999999999973
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=51.47 E-value=6.1 Score=38.41 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHcCCCEEEEecCCCCchhhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~ 450 (838)
+..++-++++||+|+|||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446788999999999999754
No 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.43 E-value=6.8 Score=38.02 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=51.38 E-value=5.1 Score=37.26 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.3
Q ss_pred CEEEEecCCCCchhhhH
Q psy12983 435 DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~ 451 (838)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 305
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=51.32 E-value=12 Score=39.11 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
.++.+.+.|++|+|||......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999987654443
No 306
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.85 E-value=6.4 Score=41.48 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEEecCCCCchhhhH
Q psy12983 428 PPLLEGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 428 ~~i~~~~dvlv~apTGsGKTl~~~ 451 (838)
..+..+.++++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344567899999999999997643
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.02 E-value=6.6 Score=37.92 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=16.7
Q ss_pred HcCCCEEEEecCCCCchhhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~ 450 (838)
..|+-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999754
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.81 E-value=22 Score=36.38 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCcHHH-HHHHHHHHcCC-----CEEEEecCCCCchhhhH
Q psy12983 406 NTLKAIADMGFTKMTEIQ-ARTIPPLLEGR-----DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 406 ~l~~~l~~~g~~~~~~~Q-~~ai~~i~~~~-----dvlv~apTGsGKTl~~~ 451 (838)
++.+.|.-.|+ .+.+ ..++..+++++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 56677766777 4555 33345555543 49999999999997654
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=49.17 E-value=5.6 Score=37.97 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHcCCCEEEEecCCCCchhhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~ 450 (838)
+..|+-+++.||.|+|||..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677899999999999753
No 310
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.54 E-value=8.6 Score=40.18 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.+..+++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3578999999999999764
No 311
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=48.52 E-value=7.3 Score=40.61 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 35779999999999997653
No 312
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=48.16 E-value=7.3 Score=41.19 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.5
Q ss_pred CEEEEecCCCCchhhhH
Q psy12983 435 DLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~ 451 (838)
.++++||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997653
No 313
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=47.96 E-value=7.3 Score=40.22 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997653
No 314
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.88 E-value=15 Score=49.88 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=33.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHH----HHHHcCCCEEEEecCCCCchhhhHHH
Q psy12983 404 CENTLKAIADMGFTKMTEIQARTI----PPLLEGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 404 ~~~l~~~l~~~g~~~~~~~Q~~ai----~~i~~~~dvlv~apTGsGKTl~~~lp 453 (838)
.+.+.+.+.+.|+ .+.+.+..-+ ..+..++.+++.||||+|||.++-..
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 3456667777888 5666653322 22345678999999999999986443
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.84 E-value=7.5 Score=37.48 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999753
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.66 E-value=8.9 Score=35.78 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.5
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
++.+.+.|+.|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999764
No 317
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=47.54 E-value=12 Score=36.41 Aligned_cols=24 Identities=25% Similarity=0.075 Sum_probs=18.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
.|.-+++.||+|+|||..+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999976544443
No 318
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.53 E-value=9 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.5
Q ss_pred CCEEEEecCCCCchhhhHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp 453 (838)
+.+++.||+|+|||..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999865433
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.89 E-value=8.6 Score=36.65 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.++.+++.|+.|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998653
No 320
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.76 E-value=13 Score=51.11 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH----HHcCCCEEEEecCCCCchhhhH
Q psy12983 403 VCENTLKAIADMGFTKMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 403 l~~~l~~~l~~~g~~~~~~~Q~~ai~~----i~~~~dvlv~apTGsGKTl~~~ 451 (838)
+.+.+.+.+.+.|+ ++.+.|..=+-. +...+.++++||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34566777778999 667666443323 2345679999999999998864
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=46.70 E-value=8.5 Score=36.47 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.4
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
++.+++.|+.|||||..+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999986533
No 322
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.44 E-value=14 Score=36.87 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=19.4
Q ss_pred CEEEEecCCCCchhhhHHHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
++++.++.|.|||..++--+..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999998766665554
No 323
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=46.42 E-value=9.3 Score=39.64 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=15.5
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
+.+++.||+|+|||..+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999986543
No 324
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=46.33 E-value=1.4e+02 Score=33.27 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=25.6
Q ss_pred CEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcC--CHHHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISP--TRELSMQ 483 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~P--t~~La~Q 483 (838)
.+++++++|+|||..+...+..+. . .+.+++++.. .+..+.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~------~G~kVllVd~D~~r~aa~~ 146 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-R------KGWKTCLICADTFRAGAFD 146 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H------TTCCEEEEEECCSSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-h------CCCeEEEEeccccchhHHH
Confidence 578899999999987655443332 2 2455666553 3444433
No 325
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.30 E-value=8.1 Score=41.13 Aligned_cols=18 Identities=33% Similarity=0.154 Sum_probs=14.8
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999976543
No 326
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=46.16 E-value=8.1 Score=38.97 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3569999999999997653
No 327
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=46.09 E-value=15 Score=31.63 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=34.3
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
....++++||.+-..+...+..|++.|+++..+.|++..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 356789999999888999999999999999999998754
No 328
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=45.98 E-value=25 Score=39.43 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCeEEEEecchhhHHHHHHHhhcC----CCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccC-----CccC-C-CCCC
Q psy12983 642 KKKVMVFFSSCMSVKFHHELLNYI----DLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDV-----AARG-L-DIPA 710 (838)
Q Consensus 642 ~~kvIIF~~t~~~~~~l~~~L~~~----~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~-----~~~G-i-Dip~ 710 (838)
+.++||.++++.-+...++.+++. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 778999999998888777777654 889999999997665433322 24689999951 1222 3 5667
Q ss_pred ccEEEEeC
Q psy12983 711 VDWIVQYD 718 (838)
Q Consensus 711 v~~VI~~d 718 (838)
+++||.-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78888643
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=45.64 E-value=9.4 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999753
No 330
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=45.60 E-value=10 Score=41.38 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=15.4
Q ss_pred CEEEEecCCCCchhhhHHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp~ 454 (838)
-++|.||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 36899999999997654433
No 331
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=44.90 E-value=10 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=16.2
Q ss_pred HHcCCCEEEEecCCCCchhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~ 449 (838)
+..|+-+.+.||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999975
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=44.84 E-value=8.1 Score=37.29 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.9
Q ss_pred CCEEEEecCCCCchhh
Q psy12983 434 RDLVGSAKTGSGKTLA 449 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~ 449 (838)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=44.59 E-value=9.4 Score=35.43 Aligned_cols=18 Identities=6% Similarity=-0.204 Sum_probs=14.8
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|+|||.++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 334
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=44.47 E-value=16 Score=39.01 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=26.9
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt 477 (838)
.|+-+++.||.|+|||..++..+..... .+..++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA-------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECC
Confidence 4577999999999999876555544432 24567777643
No 335
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.45 E-value=14 Score=40.70 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=16.6
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
.+.+++.||.|+|||+.+-.
T Consensus 215 prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 37899999999999986533
No 336
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=44.18 E-value=10 Score=40.85 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=16.6
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
...+++.||+|+|||..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=43.86 E-value=11 Score=35.96 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.1
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 338
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=43.79 E-value=23 Score=39.94 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=20.4
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELI 458 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l 458 (838)
++.+++|.|+||||||.+.-..+...+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999986544444444
No 339
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=43.57 E-value=16 Score=39.06 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=27.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt 477 (838)
.++-+++.|+.|+|||..++-.+..... .+..++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCC
Confidence 4577999999999999877655554432 24567777653
No 340
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=43.27 E-value=16 Score=37.75 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHcCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
+..|.-+++.||+|+|||..+...+.... . ..+..++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~-----~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWG-T-----AMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHH-H-----TSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH-H-----HcCCeEEEEe
Confidence 34567899999999999976544333322 1 2244566664
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.89 E-value=7.9 Score=41.82 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHcCCCEEEEecCCCCchhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~ 449 (838)
+..|..+++.||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999975
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=42.81 E-value=12 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998754
No 343
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=42.72 E-value=14 Score=39.70 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.| ++.-|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4555667866 677899999999763
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.59 E-value=11 Score=35.40 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.8
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
-+++.|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999865
No 345
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.17 E-value=23 Score=40.33 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCchhhhHHHHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVELIY 459 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~~l~ 459 (838)
..+++|.|.||||||.+.-..++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999876555555543
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.11 E-value=8.2 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCCCchhhhHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~l 452 (838)
.|+.+++.|+.|||||..+-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355789999999999986543
No 347
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=41.80 E-value=7.6 Score=39.40 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.9
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998654
No 348
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=41.73 E-value=18 Score=30.55 Aligned_cols=38 Identities=5% Similarity=0.042 Sum_probs=33.4
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
...++++||.+-..+...+..|++.|+++..+.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 56789999999989999999999999999999998753
No 349
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.62 E-value=1.2e+02 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHH---cCCCEEEEecCCCCchhhhHH
Q psy12983 419 MTEIQARTIPPLL---EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 419 ~~~~Q~~ai~~i~---~~~dvlv~apTGsGKTl~~~l 452 (838)
+-..-..+|+.+. +|+.+.+.+|+|+|||.....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 4455566776654 689999999999999986543
No 350
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=41.58 E-value=17 Score=30.79 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
...++++||.+-..+...+..|+..|+++..+.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 56789999999889999999999999999999998653
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.42 E-value=12 Score=36.44 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHHcCCCEEEEecCCCCchhhh
Q psy12983 429 PLLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 429 ~i~~~~dvlv~apTGsGKTl~~ 450 (838)
.+..|+-+.+.||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999753
No 352
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.14 E-value=13 Score=36.31 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
+-.++.|+.|||||..++.-+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 457899999999998764433
No 353
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.12 E-value=8.2 Score=36.39 Aligned_cols=20 Identities=30% Similarity=0.139 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.|.-+.+.||.|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999997543
No 354
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=41.00 E-value=12 Score=36.11 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.++.+++.|+.|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.67 E-value=11 Score=36.61 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987544
No 356
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=40.40 E-value=15 Score=37.20 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=18.3
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
.++.+++.|++|+|||.++-+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4899999999999999875433
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=40.29 E-value=13 Score=35.35 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=17.9
Q ss_pred HcCCCEEEEecCCCCchhhhHHH
Q psy12983 431 LEGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~~lp 453 (838)
..+..+++.|+.|||||..+-..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999865433
No 358
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=40.12 E-value=25 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHcC----CCEEEEecCCCCchhhh
Q psy12983 424 ARTIPPLLEG----RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 424 ~~ai~~i~~~----~dvlv~apTGsGKTl~~ 450 (838)
..++..++++ +.+++.||.|+|||..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4455555544 35999999999999754
No 359
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.08 E-value=11 Score=41.73 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
++.+++.||+|+|||..+..
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 36799999999999987643
No 360
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=40.07 E-value=16 Score=38.68 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4445667766 677899999999763
No 361
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.03 E-value=9.6 Score=37.76 Aligned_cols=20 Identities=40% Similarity=0.326 Sum_probs=12.7
Q ss_pred HcCCCEEEEecCCCCchhhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~ 450 (838)
..|+-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999764
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=39.99 E-value=13 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=16.5
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
+.+++.|+.|||||..+-..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368999999999998764443
No 363
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=39.81 E-value=19 Score=30.82 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=32.6
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCC
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQK 677 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~ 677 (838)
.+++++++|.+-......+..|++.|+.+..+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 5678999999988899999999999999888888864
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.68 E-value=12 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.135 Sum_probs=14.9
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987543
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.60 E-value=11 Score=35.30 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
++.+++.|+.|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999997643
No 366
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.56 E-value=30 Score=33.00 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=19.6
Q ss_pred CcEEEcChHHHHHHHhcCcccccCCceEEEEeCCCc
Q psy12983 519 INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADR 554 (838)
Q Consensus 519 ~~IvV~Tp~~l~~~l~~~~~~~~~~l~lvViDEah~ 554 (838)
.+++-+.++.+.+.+... .+++++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCCC
Confidence 456666666665555432 14578999996544
No 367
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=39.56 E-value=11 Score=40.24 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998654
No 368
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=39.53 E-value=6.1 Score=40.62 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=15.1
Q ss_pred CCCceEEEEEEeCChHHHHH
Q psy12983 174 AERRQTMLFSATTTAKTETL 193 (838)
Q Consensus 174 p~~rQtlLFSAT~~~~v~~l 193 (838)
+..+|++++|||.+.....+
T Consensus 250 ~~~~~~l~lSATp~~~~~~~ 269 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp TTCCEEEEECSSCCTTSTTH
T ss_pred hcCCeEEEEeCCCCCcchHH
Confidence 35789999999998654433
No 369
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=39.31 E-value=16 Score=39.00 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4455667766 677899999999763
No 370
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=39.01 E-value=22 Score=38.23 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=26.5
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCC
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt 477 (838)
.|.-++|.|+.|+|||..++-.+.... . .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-K------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-H------CCCeEEEEECC
Confidence 456789999999999976655544433 2 24567777654
No 371
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.69 E-value=12 Score=39.52 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
...+++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997653
No 372
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.65 E-value=12 Score=36.17 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhHH
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~l 452 (838)
.+..+...+ ....+.-+.+.||.|+|||..+-.
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHH
Confidence 445544433 123466788999999999986533
No 373
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=38.63 E-value=14 Score=36.62 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHcCCCEEEEecCCCCchhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~ 449 (838)
+..|+-+++.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45678899999999999975
No 374
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=38.60 E-value=15 Score=39.04 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3444567766 577899999999763
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=38.59 E-value=13 Score=34.54 Aligned_cols=21 Identities=29% Similarity=0.143 Sum_probs=17.1
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
+++++.|+.|||||.++-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999998765443
No 376
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=38.59 E-value=17 Score=38.95 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=19.5
Q ss_pred HHHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 425 RTIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 425 ~ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
..+..+++|.+ ++.-|+||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 34556677876 577899999999763
No 377
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=38.56 E-value=17 Score=39.00 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555667876 567899999999763
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=38.46 E-value=21 Score=37.46 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.9
Q ss_pred CEEEEecCCCCchhh
Q psy12983 435 DLVGSAKTGSGKTLA 449 (838)
Q Consensus 435 dvlv~apTGsGKTl~ 449 (838)
-+++.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368999999999974
No 379
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=38.33 E-value=11 Score=38.93 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
.-++++||+|+|||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 380
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=38.31 E-value=18 Score=39.03 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445667766 677899999999763
No 381
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=38.30 E-value=17 Score=39.65 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455667765 677899999999763
No 382
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=38.09 E-value=17 Score=39.16 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455667876 677899999999653
No 383
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=37.94 E-value=17 Score=38.53 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=20.4
Q ss_pred HHHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 425 RTIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 425 ~ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
..+..+++|.+ ++.-|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45667778876 677899999999763
No 384
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.78 E-value=12 Score=35.43 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
++.+++.|+.|||||..+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34588999999999987543
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=37.75 E-value=14 Score=36.31 Aligned_cols=20 Identities=25% Similarity=0.026 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
..+.+++.|++|||||..+-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34678999999999998653
No 386
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=37.71 E-value=13 Score=35.28 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
++-+++.|+.|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999986533
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=37.65 E-value=16 Score=34.47 Aligned_cols=20 Identities=25% Similarity=0.022 Sum_probs=16.1
Q ss_pred CCEEEEecCCCCchhhhHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp 453 (838)
+.+++.|+.|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999875433
No 388
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=37.63 E-value=15 Score=35.44 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
+-+++.|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999998653
No 389
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=37.61 E-value=21 Score=44.80 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=30.0
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRE 479 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~ 479 (838)
.+|.|..|||||.+.+--+...+... ..+.++++|||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~----~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA----PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC----TTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC----CCCCcEEEEecCcc
Confidence 47899999999998776666665441 24578999999763
No 390
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=37.56 E-value=16 Score=39.13 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455667866 677899999999753
No 391
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=37.54 E-value=15 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.++-+++.|+.|||||..+-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998653
No 392
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=37.43 E-value=18 Score=38.86 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445567766 677899999999763
No 393
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=37.40 E-value=18 Score=38.60 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445567766 677899999999763
No 394
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=37.36 E-value=36 Score=37.31 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=39.1
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHHH-hcCCcEEEcC
Q psy12983 468 GTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKL-AKGINIIVAT 525 (838)
Q Consensus 468 ~~~vlvl~Pt~~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~l-~~~~~IvV~T 525 (838)
+.+++|++|++.-+..+++.+++. +..+..++|+. .......+ .+..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 446899999999999888887764 67788888763 33333333 3458999999
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=37.11 E-value=14 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.053 Sum_probs=16.3
Q ss_pred CCEEEEecCCCCchhhhHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~ 454 (838)
+.+++.||.||||+..+...+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999998765443
No 396
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=37.08 E-value=16 Score=35.06 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=24.0
Q ss_pred EEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy12983 436 LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKE 490 (838)
Q Consensus 436 vlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~~La~Q~~~~l~~ 490 (838)
++|.|++|||||.-+.-.+ . . +..++|+......-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~-----~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G-----D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C-----S-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----h-----c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999996443221 1 2 44578888755443333333333
No 397
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=37.07 E-value=14 Score=37.10 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.5
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999754
No 398
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=37.06 E-value=80 Score=26.89 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=41.4
Q ss_pred EEEecchhhHHHHHHHhhcCCCCeEEecCCCChhHHHHHHHHHhcCCceE
Q psy12983 646 MVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGI 695 (838)
Q Consensus 646 IIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~V 695 (838)
++|.+.-+-...+...++..|.++..+.++.....|..-++.|.+.-.++
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 56666667777888888888999999999999999999999998766554
No 399
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=36.92 E-value=18 Score=38.48 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445567776 577899999999763
No 400
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=36.91 E-value=23 Score=29.39 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=32.0
Q ss_pred CeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 643 KKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 643 ~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
.++++||.+-..+...+..|++.|+.+..+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 789999999888999999999999988888998763
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=36.84 E-value=20 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=16.9
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
.+.+++.|+.|||||..+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999875443
No 402
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=36.78 E-value=18 Score=38.79 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 427 IPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 427 i~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
+..+++|.+ ++.-|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 444567766 677899999999763
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.67 E-value=16 Score=33.93 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=15.9
Q ss_pred CCEEEEecCCCCchhhhHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp 453 (838)
+.+++.|+.|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999875433
No 404
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.62 E-value=24 Score=33.36 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCCchhhhHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~l 452 (838)
.+..+++.|+.|+|||..+-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356689999999999986544
No 405
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.53 E-value=16 Score=35.84 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=17.2
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
.++.+++.|+.|||||..+-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999875433
No 406
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.37 E-value=8.4 Score=37.38 Aligned_cols=20 Identities=30% Similarity=-0.004 Sum_probs=15.9
Q ss_pred HcCCCEEEEecCCCCchhhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~~ 450 (838)
..+.-+.+.|++|||||..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999754
No 407
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.25 E-value=15 Score=34.01 Aligned_cols=18 Identities=17% Similarity=-0.060 Sum_probs=14.8
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 408
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=36.23 E-value=8.9 Score=22.96 Aligned_cols=11 Identities=64% Similarity=1.159 Sum_probs=9.1
Q ss_pred cCCCCCCCCCC
Q psy12983 14 SDGGKYPPSYE 24 (838)
Q Consensus 14 ~~~~~~~~~~~ 24 (838)
..|.|-|||||
T Consensus 7 ntgakqppsye 17 (26)
T 2jmf_B 7 NTGAKQPPSYE 17 (26)
T ss_pred CCCCCCCCCHH
Confidence 35789999997
No 409
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.17 E-value=19 Score=39.26 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=20.0
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667778877 567899999999764
No 410
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=36.02 E-value=1.6e+02 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHcCCCEEEEecCCCCchhhhHHHHH
Q psy12983 427 IPPLLEGRDLVGSAKTGSGKTLAFLVPAV 455 (838)
Q Consensus 427 i~~i~~~~dvlv~apTGsGKTl~~~lp~l 455 (838)
+..+.+|+..++.++.|.|||..+...+.
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 33345789999999999999976544433
No 411
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=35.99 E-value=17 Score=38.67 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=19.6
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778876 677899999999764
No 412
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=35.98 E-value=17 Score=39.12 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=17.9
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLA 449 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~ 449 (838)
.+..+++|.+ ++.-|+||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3444567766 67789999999965
No 413
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=35.80 E-value=19 Score=38.60 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445567766 677899999999763
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=35.64 E-value=17 Score=34.91 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.++.+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999865
No 415
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=35.58 E-value=18 Score=38.61 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778876 567899999999764
No 416
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.40 E-value=16 Score=35.61 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=14.9
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 417
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=35.25 E-value=17 Score=39.14 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=19.5
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778876 567899999999763
No 418
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=35.14 E-value=17 Score=34.92 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~l 452 (838)
++.+++.|+.|||||..+-.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999987543
No 419
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=35.10 E-value=16 Score=34.65 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.3
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
.-+++.||.|+|||..+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346889999999997643
No 420
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=35.10 E-value=16 Score=34.39 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=14.7
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|+|||..+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=35.08 E-value=18 Score=35.20 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEecCCCCchhhhH
Q psy12983 419 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 419 ~~~~Q~~ai~~i~~~~dvlv~apTGsGKTl~~~ 451 (838)
.++.+.... .+..++-+++.|+.|+|||..+-
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 345555543 34567788999999999997653
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=35.02 E-value=16 Score=38.53 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
..+++.||+|+|||..+-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999976533
No 423
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.83 E-value=9.9 Score=29.62 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=15.4
Q ss_pred ceeeeccceeecccccc
Q psy12983 48 KTCLVKGKTYQIGDKIQ 64 (838)
Q Consensus 48 ~~~~~~~~~~~~~~~~~ 64 (838)
+.|-..|++|+|||+-+
T Consensus 18 ~~C~d~G~~YrIGe~W~ 34 (68)
T 2ec3_A 18 RWCHDNGVNYKIGEKWD 34 (68)
T ss_dssp SCBCSSSCCBCTTCEEE
T ss_pred CceecCCeeEEcCceEe
Confidence 78999999999999865
No 424
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=34.83 E-value=16 Score=35.50 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|.-+.|.||+|||||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 425
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.32 E-value=17 Score=34.22 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.9
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||.++-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 426
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.16 E-value=25 Score=36.98 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
++-+.+.+++|+|||......+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999998754443
No 427
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=34.14 E-value=17 Score=34.15 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=12.4
Q ss_pred cCCCEEEEecCCCCchhhhHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~l 452 (838)
+++-+++.|+.|||||..+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346789999999999987543
No 428
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=34.12 E-value=29 Score=36.13 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.0
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
+.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456889999999999754
No 429
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=34.03 E-value=20 Score=38.76 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455667765 677899999999764
No 430
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=33.96 E-value=21 Score=39.48 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4445567766 677899999999763
No 431
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=33.77 E-value=18 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.5
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=33.72 E-value=19 Score=35.21 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
++.+++.|+.|||||..+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 467899999999999875433
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=33.65 E-value=15 Score=33.89 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.2
Q ss_pred CEEEEecCCCCchhh
Q psy12983 435 DLVGSAKTGSGKTLA 449 (838)
Q Consensus 435 dvlv~apTGsGKTl~ 449 (838)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999976
No 434
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=33.55 E-value=17 Score=34.65 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.6
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
.+++.|+.|||||..+-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999986543
No 435
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=33.53 E-value=49 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=32.5
Q ss_pred CC-CeEEEEe-cchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 641 RK-KKVMVFF-SSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 641 ~~-~kvIIF~-~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
.. .++++|| .+-..+...+..|+..|+++..+.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 7899999 57777889999999999999999999864
No 436
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=33.43 E-value=28 Score=29.69 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=33.0
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~ 678 (838)
....++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 35678999999988899999999999985 8889998753
No 437
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.35 E-value=20 Score=39.10 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=20.5
Q ss_pred HHHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 425 RTIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 425 ~ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
..+..+++|.+ ++.-|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46777788876 577899999999763
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=33.29 E-value=28 Score=38.31 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=23.4
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS 475 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~ 475 (838)
..+++.|++|+|||..+...+..... .+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-------~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-------RGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-------HHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEe
Confidence 46889999999999876555444322 245566554
No 439
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.04 E-value=14 Score=36.23 Aligned_cols=20 Identities=25% Similarity=-0.017 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.|.-+.+.||+|+|||..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56778999999999997543
No 440
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.85 E-value=18 Score=35.35 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.4
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
..+.+.|++|||||..+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999986533
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=32.85 E-value=23 Score=35.09 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=17.4
Q ss_pred CCCEEEEecCCCCchhhhHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~ 454 (838)
++.+++.|+.|||||..+-..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998754443
No 442
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=32.74 E-value=18 Score=36.94 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.5
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.+++.||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999754
No 443
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=32.18 E-value=19 Score=36.08 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=17.3
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
..+.+++.|+.|||||..+-..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999875443
No 444
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=32.17 E-value=18 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|+.+++.|+.|||||.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999764
No 445
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=32.06 E-value=18 Score=39.22 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=16.6
Q ss_pred HHHcCCC--EEEEecCCCCchhhh
Q psy12983 429 PLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 429 ~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+++|.+ ++.-|+||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3456766 677899999999763
No 446
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=32.02 E-value=21 Score=34.42 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=17.5
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
.++-+++.|+.|||||..+-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4567899999999999875433
No 447
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=31.98 E-value=21 Score=33.48 Aligned_cols=16 Identities=25% Similarity=0.013 Sum_probs=13.6
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
-.++.||+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999753
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=31.86 E-value=22 Score=45.21 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCcccccCcHHHHHHHHHHCCccceEEEEe
Q psy12983 542 KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFS 581 (838)
Q Consensus 542 ~~l~lvViDEah~l~~~gf~~~~~~il~~l~~~~qil~lS 581 (838)
++-+++|+||+=.-.|..-...+.+.+....+++-++..+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 4567899999977666555556666666655555555544
No 449
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=31.82 E-value=26 Score=39.00 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=17.0
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
..++++.||+|+|||..+-..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 468999999999999875433
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.73 E-value=28 Score=40.07 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHcCCCEEEEecCCCCchhhh
Q psy12983 429 PLLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 429 ~i~~~~dvlv~apTGsGKTl~~ 450 (838)
.+..+..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3557889999999999999764
No 451
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=31.72 E-value=19 Score=41.52 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=14.3
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999643
No 452
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.61 E-value=18 Score=34.90 Aligned_cols=19 Identities=26% Similarity=0.032 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.+.-+.+.||+|||||..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455789999999999754
No 453
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=31.49 E-value=21 Score=38.55 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEecCCCCchhhh
Q psy12983 426 TIPPLLEGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 426 ai~~i~~~~d--vlv~apTGsGKTl~~ 450 (838)
.+..+++|.+ ++.-|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566678876 667899999999763
No 454
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=31.32 E-value=18 Score=34.73 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.6
Q ss_pred cCCCEEEEecCCCCchhhhHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~l 452 (838)
.++-+++.|+.|||||..+-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 345689999999999986543
No 455
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=31.30 E-value=22 Score=34.28 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=17.6
Q ss_pred cCCCEEEEecCCCCchhhhHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp 453 (838)
.++-+++.|+.|||||..+-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999875433
No 456
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=31.04 E-value=21 Score=34.27 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.7
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
.+.+.|+.|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999764
No 457
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.98 E-value=22 Score=37.73 Aligned_cols=46 Identities=17% Similarity=-0.026 Sum_probs=27.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
.|.-+++.||+|+|||..+.-.+...... ......+..++|+.-..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~-~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLP-GAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSC-BTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc-cccCCCCCeEEEEECCC
Confidence 34678999999999997655444432111 00011356788877543
No 458
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.67 E-value=20 Score=36.72 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.5
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.+++.||.|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999754
No 459
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.57 E-value=39 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.104 Sum_probs=18.3
Q ss_pred CCCEEEEecCCCCchhhhHHHHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVPAVE 456 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp~l~ 456 (838)
|.-+++.|++|+|||..++-.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999765544443
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.40 E-value=22 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.9
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
.+.+.|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 461
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=30.38 E-value=22 Score=39.30 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCCchhhhH
Q psy12983 433 GRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~ 451 (838)
.+++++.||+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3689999999999998653
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=30.26 E-value=20 Score=37.52 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.3
Q ss_pred HcCCCEEEEecCCCCchhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~ 449 (838)
..|+-+.+.||+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578899999999999964
No 463
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=30.01 E-value=22 Score=35.74 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.+..+.+.||+|||||..+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999997643
No 464
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=29.99 E-value=22 Score=34.10 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.4
Q ss_pred CCEEEEecCCCCchhhh
Q psy12983 434 RDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~ 450 (838)
+.+++.|+.|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999765
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.70 E-value=25 Score=37.76 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.9
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999765
No 466
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=29.54 E-value=18 Score=38.86 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=13.7
Q ss_pred CCEEEEecCCCCchhh
Q psy12983 434 RDLVGSAKTGSGKTLA 449 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~ 449 (838)
.-.++.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468999999999986
No 467
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=29.52 E-value=26 Score=37.48 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.2
Q ss_pred cCCC--EEEEecCCCCchhhh
Q psy12983 432 EGRD--LVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~d--vlv~apTGsGKTl~~ 450 (838)
.|.+ ++.-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3666 688999999999763
No 468
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.47 E-value=16 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCCCchhh
Q psy12983 432 EGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~ 449 (838)
.|.-+.+.||.|+|||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999963
No 469
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=29.39 E-value=1e+02 Score=30.35 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCChhHHHHHHHHHhcCCceEEEEcc
Q psy12983 629 RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQMKRTTTFFQFCNAETGILLCTD 700 (838)
Q Consensus 629 k~~~l~~~l~~~~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~ 700 (838)
|.......+... ..+++|+++++.-+...++.+.+.+.. +..++|+... ..+|+|+|.
T Consensus 121 KT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 121 KTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp HHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred HHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 433333333333 678999999999999999999888888 8889987652 457888883
No 470
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=29.27 E-value=45 Score=30.30 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=31.5
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCC-CeEEecCCCC
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDL-PVMCIHGKQK 677 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~-~v~~lhg~m~ 677 (838)
....++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3567899999998888999999999998 5899999985
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=29.02 E-value=23 Score=34.85 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.2
Q ss_pred CEEEEecCCCCchhhhHHH
Q psy12983 435 DLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~lp 453 (838)
.+++.|+.|||||..+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865433
No 472
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=29.01 E-value=20 Score=35.37 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=17.3
Q ss_pred cCCCEEEEecCCCCchhhhHHHH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPA 454 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~ 454 (838)
+.+-+++.||.||||+..+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999998764443
No 473
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=28.98 E-value=77 Score=25.38 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=30.9
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~ 678 (838)
....+++++|.+-..+...+..|++.|+. +..+ |++..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 45678999999988899999999999885 5556 77653
No 474
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=28.97 E-value=23 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=14.6
Q ss_pred CEEEEecCCCCchhhhHH
Q psy12983 435 DLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 435 dvlv~apTGsGKTl~~~l 452 (838)
-+++.|+.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999986543
No 475
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=28.94 E-value=44 Score=31.52 Aligned_cols=16 Identities=25% Similarity=0.030 Sum_probs=13.1
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
-+.+.|+.|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 476
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=28.82 E-value=23 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.154 Sum_probs=13.5
Q ss_pred CEEEEecCCCCchhhh
Q psy12983 435 DLVGSAKTGSGKTLAF 450 (838)
Q Consensus 435 dvlv~apTGsGKTl~~ 450 (838)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 477
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=28.51 E-value=21 Score=29.84 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=16.6
Q ss_pred cceeeeccceeeccccccc
Q psy12983 47 EKTCLVKGKTYQIGDKIQA 65 (838)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~ 65 (838)
.+.|...|++|+|||+-+.
T Consensus 46 ~~~C~~~g~~Y~IGetW~k 64 (90)
T 2cg7_A 46 ANRCHEGGQSYKIGDTWRR 64 (90)
T ss_dssp TTEEEETTEEEETTCEEEE
T ss_pred cceeeeCCcEEecCceEee
Confidence 4689999999999998765
No 478
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=28.51 E-value=79 Score=38.01 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHhcCCCeEEEEecchhhHHHHHHHhh----cCCCCeEEecCCCChhHHHHHHHHHhcCCceEEEEccCC------cc--
Q psy12983 637 LKKNRKKKVMVFFSSCMSVKFHHELLN----YIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVA------AR-- 704 (838)
Q Consensus 637 l~~~~~~kvIIF~~t~~~~~~l~~~L~----~~~~~v~~lhg~m~~~~R~~i~~~F~~g~~~VLVaT~~~------~~-- 704 (838)
+....+.+++|.++|+.-+.+.++.+. .+|+.+..+.|+++..+|.... ..+|+++|..- ..
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpgrlgfDyLrd~m 188 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNSELGFDYLRDNM 188 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHHHHHHHHHHHTS
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECchhhhhHHHHHhh
Confidence 444566789999999988777766654 4589999999999987776654 37899999522 12
Q ss_pred -----CCCCC---CccEEEEeC
Q psy12983 705 -----GLDIP---AVDWIVQYD 718 (838)
Q Consensus 705 -----GiDip---~v~~VI~~d 718 (838)
.+++. +++++|...
T Consensus 189 ~~~~~~l~~r~d~~l~~lIIDE 210 (997)
T 2ipc_A 189 AISPDQLVLRHDHPLHYAIIDE 210 (997)
T ss_dssp CSSTTTCCSCSSSSSCEEEETT
T ss_pred hcchhhcccccCCCcceEEEec
Confidence 24566 777777543
No 479
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=28.33 E-value=28 Score=30.70 Aligned_cols=38 Identities=13% Similarity=-0.012 Sum_probs=32.4
Q ss_pred CCCeEEEEecchhh--HHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 641 RKKKVMVFFSSCMS--VKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 641 ~~~kvIIF~~t~~~--~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
.+.++++||.+-.. +...+..|+..|+++..+.|++..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 46789999999777 889999999999998889998753
No 480
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=27.92 E-value=37 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCCCchhhh
Q psy12983 432 EGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~ 450 (838)
.|.-+.+.||+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4566889999999999864
No 481
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.89 E-value=28 Score=33.42 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred cCCceEEEEeCCCccc--ccCcHHHHHHHHHHCCccceEEEEeeec
Q psy12983 541 YKNLQCLIIDEADRIL--DIGFEEDMKQIVNLLPKRRQTMLFSATT 584 (838)
Q Consensus 541 ~~~l~lvViDEah~l~--~~gf~~~~~~il~~l~~~~qil~lSAT~ 584 (838)
..+.+++|+||+..+. +..|...+.+++.. ...+++-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999987763 33366666666653 33355556665
No 482
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=27.85 E-value=53 Score=28.06 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=33.4
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
....++++||.+-..+...+..|+..|+....+.|++..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 467789999999888999999999999866788898764
No 483
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=27.83 E-value=38 Score=30.46 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=33.8
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCC-CeEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDL-PVMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~-~v~~lhg~m~~ 678 (838)
....++++||.+-..+...+..|++.|+ ++..+.|++..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 4567899999999899999999999998 58899999753
No 484
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=27.63 E-value=18 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCCCchhh
Q psy12983 432 EGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~ 449 (838)
.|.-+.+.||.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999964
No 485
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.39 E-value=36 Score=30.95 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=32.7
Q ss_pred CCCeEEEEecch--hhHHHHHHHhhcCCCCeEEecCCCCh
Q psy12983 641 RKKKVMVFFSSC--MSVKFHHELLNYIDLPVMCIHGKQKQ 678 (838)
Q Consensus 641 ~~~kvIIF~~t~--~~~~~l~~~L~~~~~~v~~lhg~m~~ 678 (838)
...++++||.+- ..+...+..|+..|+++..+.|++..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 466899999987 58889999999999999999998753
No 486
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=27.25 E-value=34 Score=29.12 Aligned_cols=39 Identities=23% Similarity=0.107 Sum_probs=33.2
Q ss_pred cCCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCCh
Q psy12983 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQ 678 (838)
Q Consensus 640 ~~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~ 678 (838)
....++++||.+-..+...+..|++.|+. +..+.|++..
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 35678999999988899999999999984 8889998754
No 487
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=27.24 E-value=34 Score=37.59 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEc--CCHHHHHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIIS--PTRELSMQ 483 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~--Pt~~La~Q 483 (838)
+.+++.++.|+|||.++.-.+..+. . ..+.+++++. |.+..+.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~-~-----~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR-E-----KHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-H-----TSCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H-----hcCCeEEEEecCCCCccHHH
Confidence 3577889999999987665554432 2 2255666654 44444444
No 488
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.17 E-value=26 Score=35.45 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=15.6
Q ss_pred CCEEEEecCCCCchhhhHH
Q psy12983 434 RDLVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~l 452 (838)
+-++++|+.|||||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4588999999999986543
No 489
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.93 E-value=27 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.2
Q ss_pred EEEEecCCCCchhhhHH
Q psy12983 436 LVGSAKTGSGKTLAFLV 452 (838)
Q Consensus 436 vlv~apTGsGKTl~~~l 452 (838)
+++.|+.|||||..+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999987543
No 490
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=26.89 E-value=46 Score=33.89 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=38.6
Q ss_pred CCcchHHHHHHHHHhhC--CCCCeeeeHH---------hhhhc-CCceeEEeeCCCChhhhHHHHHHHHh
Q psy12983 226 CPSEKRFLLLFTFLKKN--HIGEIVAWHV---------LLLQV-IKIKVQTRIGKEDFVTSVRNVLAAHY 283 (838)
Q Consensus 226 v~~~~K~~~L~~ll~~~--~~~~~iVF~~---------~~l~~-~~~~~~~~hg~~~~~~~~~~~~~~~~ 283 (838)
+....|+..|..++... ...++|||++ ..+.. .|+.+..+||+++.. -|+.+...+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~--~R~~~i~~F 159 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK--ERDDIISKF 159 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHH--HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHH--HHHHHHHHh
Confidence 34567999999888765 5679999943 33444 489999999998753 344444434
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=26.78 E-value=25 Score=33.47 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCCCchhhhH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~ 451 (838)
.|+-+++.|+.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 35679999999999997653
No 492
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=26.72 E-value=75 Score=38.83 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCcchHHHHHHHHHhhCCCCCeeeeHHh---------hhh-cCCceeEEeeCCCChhh
Q psy12983 226 CPSEKRFLLLFTFLKKNHIGEIVAWHVL---------LLQ-VIKIKVQTRIGKEDFVT 273 (838)
Q Consensus 226 v~~~~K~~~L~~ll~~~~~~~~iVF~~~---------~l~-~~~~~~~~~hg~~~~~~ 273 (838)
+....|...|..++.....+++|||+++ .|. ..|+++..+||+++..+
T Consensus 485 ~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred cCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 4456799999999998888899999533 345 45999999999997754
No 493
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=26.67 E-value=21 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.1
Q ss_pred HcCCCEEEEecCCCCchhh
Q psy12983 431 LEGRDLVGSAKTGSGKTLA 449 (838)
Q Consensus 431 ~~~~dvlv~apTGsGKTl~ 449 (838)
..|.-+.+.||.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999964
No 494
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=26.60 E-value=28 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=15.5
Q ss_pred CCCEEEEecCCCCchhhh
Q psy12983 433 GRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~ 450 (838)
+..+++.||.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999754
No 495
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=26.54 E-value=23 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCEEEEecCCCCchhhhH
Q psy12983 434 RDLVGSAKTGSGKTLAFL 451 (838)
Q Consensus 434 ~dvlv~apTGsGKTl~~~ 451 (838)
..+++.|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 496
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=26.17 E-value=3e+02 Score=27.12 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=88.7
Q ss_pred CcEEEEEcCCH--HHHHHHHHHHHHHhhhcCCeEEEEeCCcchHHHHHH----HhcCCcEEEcChH---HHHHHHhcCcc
Q psy12983 468 GTGIIIISPTR--ELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQK----LAKGINIIVATPG---RLLDHLQNTPE 538 (838)
Q Consensus 468 ~~~vlvl~Pt~--~La~Q~~~~l~~~~~~~~~~v~~l~gg~~~~~~~~~----l~~~~~IvV~Tp~---~l~~~l~~~~~ 538 (838)
...+-+++|.. ..-.++.+.+.+.....+..+.....+.+...+... +..+++-+|..|. .....+..
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~--- 81 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK--- 81 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH---
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH---
Confidence 45566777742 344455666666666677777766555444333322 2345665554321 22222211
Q ss_pred cccCCceEEEEeCCCc-----ccccC---cHHHHHHHHHHCCccceEEEEeeecccchHHHH----HHHccCCC-eEEEe
Q psy12983 539 FLYKNLQCLIIDEADR-----ILDIG---FEEDMKQIVNLLPKRRQTMLFSATTTAKTETLT----KLALKKEP-VYIGV 605 (838)
Q Consensus 539 ~~~~~l~lvViDEah~-----l~~~g---f~~~~~~il~~l~~~~qil~lSAT~~~~~~~l~----~~~l~~~~-~~i~~ 605 (838)
..-..+-+|.+|-... +.... -....+.+++.+....++.+++........... ...+...+ ..+ +
T Consensus 82 ~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~-~ 160 (291)
T 3l49_A 82 INDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKI-I 160 (291)
T ss_dssp HHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEE-C
T ss_pred HHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE-E
Confidence 1112344566654321 11000 223344455544556778888765433221111 11222211 110 0
Q ss_pred cCccccccccceeeEEEECC--chhHHHHHHHHHHhcCC--CeEEEEecchhhHHHHHHHhhcCCC
Q psy12983 606 DDTKEEATVAGLEQGYVVCP--SEKRFLLLFTFLKKNRK--KKVMVFFSSCMSVKFHHELLNYIDL 667 (838)
Q Consensus 606 ~~~~~~~~~~~l~~~~~~~~--~~~k~~~l~~~l~~~~~--~kvIIF~~t~~~~~~l~~~L~~~~~ 667 (838)
... ...... ...-...+..++...+. ....|||.+-..+.-+.+.|++.|.
T Consensus 161 ~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 161 EPE-----------LRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp SSC-----------BCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred eee-----------ccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 000 000111 12234556666666541 5678899988888888899988876
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.11 E-value=39 Score=40.08 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=17.2
Q ss_pred CCCEEEEecCCCCchhhhHHH
Q psy12983 433 GRDLVGSAKTGSGKTLAFLVP 453 (838)
Q Consensus 433 ~~dvlv~apTGsGKTl~~~lp 453 (838)
..++++.||+|+|||.++-..
T Consensus 201 ~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 468999999999999876433
No 498
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.94 E-value=45 Score=29.83 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCeEEEEecchhhHHHHHHHhhcCCCC-eEEecCCCCh
Q psy12983 641 RKKKVMVFFSSCMSVKFHHELLNYIDLP-VMCIHGKQKQ 678 (838)
Q Consensus 641 ~~~kvIIF~~t~~~~~~l~~~L~~~~~~-v~~lhg~m~~ 678 (838)
...++++||.+-..+...+..|++.|+. +..+.|++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 5678999999988899999999999984 8889998753
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=25.86 E-value=53 Score=42.52 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=29.7
Q ss_pred cCCCEEEEecCCCCchhhhHHHHHHHHHhccCCCCCCcEEEEEcCCH
Q psy12983 432 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTR 478 (838)
Q Consensus 432 ~~~dvlv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~vlvl~Pt~ 478 (838)
.++.+++.|++|+|||..++..+...+. .+..++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~-------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-------CCCceEEEEecC
Confidence 3578999999999999877666666553 256788877543
No 500
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=25.77 E-value=23 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.8
Q ss_pred HHcCCCEEEEecCCCCchhhh
Q psy12983 430 LLEGRDLVGSAKTGSGKTLAF 450 (838)
Q Consensus 430 i~~~~dvlv~apTGsGKTl~~ 450 (838)
+..++.++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345799999999999999764
Done!