RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12983
(838 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 156 bits (395), Expect = 3e-44
Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 11/211 (5%)
Query: 396 FEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGR-DLVGSAKTGSGKTLAFLVPA 454
F L + +N L AI + GF K T+IQ + IP L ++V A+TGSGKT +F +P
Sbjct: 6 FNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 63
Query: 455 VELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQK 514
+E NG II++PTREL++Q ++ L + I GG + + +
Sbjct: 64 IE-----LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 118
Query: 515 LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKR 574
L K NI+V TPGR+LDH+ L KN++ I+DEAD +L++GF +D+++I+N K
Sbjct: 119 L-KNANIVVGTPGRILDHINRGTLNL-KNVKYFILDEADEMLNMGFIKDVEKILNACNKD 176
Query: 575 RQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
++ +LFSAT + L K + + +I
Sbjct: 177 KRILLFSATMPREILNLAKKYM-GDYSFIKA 206
Score = 34.7 bits (79), Expect = 0.030
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
+ ++ +LFSAT + L K + + +I
Sbjct: 175 KDKRILLFSATMPREILNLAKKYM-GDYSFIKA 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 145 bits (366), Expect = 3e-40
Identities = 68/212 (32%), Positives = 113/212 (53%), Gaps = 9/212 (4%)
Query: 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 453
+F+ ++ + EN L+ + GF + + IQ R I P++EG D++ A++G+GKT F +
Sbjct: 10 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 67
Query: 454 AVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513
A++ I P+ ++++PTREL++Q V+ L + +GG S +A+
Sbjct: 68 ALQRIDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 123
Query: 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573
L + I+V TPGR+ D+ F ++ I+DEAD +L GF+E + QI LLP
Sbjct: 124 GL-RDAQIVVGTPGRVFDN-IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 181
Query: 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
Q +L SAT +T ++ PV I V
Sbjct: 182 TTQVVLLSATMPNDVLEVTTKFMRN-PVRILV 212
Score = 38.6 bits (89), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
Q +L SAT +T ++ PV I V
Sbjct: 181 PTTQVVLLSATMPNDVLEVTTKFMRN-PVRILV 212
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 142 bits (358), Expect = 5e-39
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 11/229 (4%)
Query: 377 TVISADVSLSIPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDL 436
T + + S + + F+ + + E+ L+ I GF K + IQ R I +++GRD+
Sbjct: 3 TKVEFETSEEVDVTPT---FDTMG--LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDV 57
Query: 437 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496
+ +++G+GKT F + + + T +I++PTREL++Q L L Y +
Sbjct: 58 IAQSQSGTGKTATFSIS----VLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 113
Query: 497 HTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRIL 556
+GG + + +KL G +++ TPGR+ D + ++ L++DEAD +L
Sbjct: 114 VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML 172
Query: 557 DIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
+ GF+E + + LP Q +L SAT + +T + +P+ I V
Sbjct: 173 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM-TDPIRILV 220
Score = 37.5 bits (86), Expect = 0.004
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
Q +L SAT + +T + +P+ I V
Sbjct: 189 PATQVVLISATLPHEILEMTNKFM-TDPIRILV 220
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 135 bits (340), Expect = 1e-36
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 11/220 (5%)
Query: 387 IPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGK 446
I+ S F+ + + E+ L+ I GF K + IQ R I P ++G D++ A++G+GK
Sbjct: 7 WNEIVDS--FDDMN--LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGK 62
Query: 447 TLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMG-G 505
T F + ++ I + ++++PTREL+ Q V+ L Y + +G
Sbjct: 63 TATFAISILQQIELDLKATQ----ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGT 118
Query: 506 ASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMK 565
R + + +IIV TPGR+ D L K ++ ++DEAD +L GF++ +
Sbjct: 119 NVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP-KYIKMFVLDEADEMLSRGFKDQIY 177
Query: 566 QIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
I L Q +L SAT + +TK + ++P+ I V
Sbjct: 178 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFM-RDPIRILV 216
Score = 37.9 bits (87), Expect = 0.003
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
Q +L SAT + +TK + ++P+ I V
Sbjct: 185 SNTQVVLLSATMPSDVLEVTKKFM-RDPIRILV 216
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 138 bits (347), Expect = 1e-36
Identities = 46/342 (13%), Positives = 89/342 (26%), Gaps = 64/342 (18%)
Query: 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489
+ R + G+GKT +L V G +I++PTR ++ + + +
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK------RGLRTLILAPTRVVAAE---MEE 56
Query: 490 ELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549
L + E + + L + N +I+
Sbjct: 57 ALRGLPIRYQTPAIRAEHTGRE--------IVDLMCHATFTMRLLSPIRV--PNYNLIIM 106
Query: 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTK 609
DEA + + +AT + P+ +
Sbjct: 107 DEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRD---PFPQSNAPIMDEEREIP 163
Query: 610 EEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPV 669
E + +G E + K K + F S + L V
Sbjct: 164 ERSWNSGHEW------------------VTDFKGKTVWFVPSIKAGNDIAACLRKNGKKV 205
Query: 670 MCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIP---------AVDWIVQYDP- 719
+ + K + T + ++ TD++ G + + ++ D
Sbjct: 206 IQLSRKTFDSEYIKTRTNDWD----FVVTTDISEMGANFKAERVIDPRRCMKPVILTDGE 261
Query: 720 ---------PDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 752
P R GR R + + I E L
Sbjct: 262 ERVILAGPMPVTHSSAAQRRGRVGRN-PKNENDQYIYMGEPL 302
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 131 bits (330), Expect = 2e-35
Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 453
+ F + L+AI D GF +E+Q IP + G D++ AK+G GKT F++
Sbjct: 1 SGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 58
Query: 454 AVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYH-HHTYGLIMGGASRQAEA 512
++ + + ++++ TREL+ Q + KY + + GG S + +
Sbjct: 59 TLQQLEPVTGQVS----VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 114
Query: 513 QKLAK-GINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI-GFEEDMKQIVNL 570
+ L K +I+V TPGR+L K+++ I+DE D++L+ D+++I +
Sbjct: 115 EVLKKNCPHIVVGTPGRILAL-ARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 571 LPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
P +Q M+FSAT + + + + + ++P+ I V
Sbjct: 174 TPHEKQVMMFSATLSKEIRPVCRKFM-QDPMEIFV 207
Score = 39.1 bits (90), Expect = 0.001
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
+Q M+FSAT + + + + + ++P+ I V
Sbjct: 176 HEKQVMMFSATLSKEIRPVCRKFM-QDPMEIFV 207
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 127 bits (319), Expect = 5e-34
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 9/211 (4%)
Query: 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 453
+FE + L I +MG+ K + IQ +IP L GRD++ AK G+GK+ A+L+P
Sbjct: 3 NEFEDYC--LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 454 AVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH-HTYGLIMGGASRQAEA 512
+ + ++ ++I PTREL++Q + ++ K+ GG + + +
Sbjct: 61 ----LLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116
Query: 513 QKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLP 572
+L +++++ATPGR+LD ++Q +++DEAD++L F + M+ I+ LP
Sbjct: 117 MRLDDTVHVVIATPGRILDL-IKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
Query: 573 KRRQTMLFSATTTAKTETLTKLALKKEPVYI 603
K RQ +L+SAT + L+K P I
Sbjct: 176 KNRQILLYSATFPLSVQKFMNSHLEK-PYEI 205
Score = 37.6 bits (86), Expect = 0.003
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYI 205
+ RQ +L+SAT + L+K P I
Sbjct: 176 KNRQILLYSATFPLSVQKFMNSHLEK-PYEI 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 125 bits (314), Expect = 6e-33
Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 15/229 (6%)
Query: 386 SIPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSG 445
S +++ + F+ LK + I + + T IQ IP +LE RD++ A+TGSG
Sbjct: 15 SATNVIEN--FDELK--LDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSG 70
Query: 446 KTLAFLVPAVELI-----YNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYG 500
KT AFL+P + + ++ +I++PTREL++Q ++
Sbjct: 71 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 130
Query: 501 LIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGF 560
++ GGA ++ +++ G +++VATPGRL+D ++ L + +++DEADR+LD+GF
Sbjct: 131 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFC-KYIVLDEADRMLDMGF 189
Query: 561 EEDMKQIVNLL----PKRRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
E +++I+ RQT++FSAT + + L L +++ V
Sbjct: 190 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYN-YIFMTV 237
Score = 39.9 bits (92), Expect = 7e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 170 NLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
N+ S RQT++FSAT + + L L +++ V
Sbjct: 201 NMPSGINRQTLMFSATFPKEIQKLAADFLYN-YIFMTV 237
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 122 bits (307), Expect = 4e-32
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 29/193 (15%)
Query: 408 LKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRN 467
+ IQ +L +A TG GKT L ++ L K
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR---- 88
Query: 468 GTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGG------ASRQAEAQKLAKGINI 521
+I PT L +Q +++ + ++G + + + I
Sbjct: 89 ---CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKI 145
Query: 522 IVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILD-----------IGFEEDMKQIVNL 570
++ T L H + + + +D+ D IL +GF D+K +
Sbjct: 146 VITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWV 200
Query: 571 LPKRRQTMLFSAT 583
R M+ +AT
Sbjct: 201 GEARGCLMVSTAT 213
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 118 bits (297), Expect = 4e-31
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 8/212 (3%)
Query: 396 FEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAV 455
FE + L I + GF K + IQ IP + GRD++ AK G+GKT AF++P
Sbjct: 3 FEDFY--LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-- 58
Query: 456 ELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKL 515
N +I+ PTREL++QT V++ L K+ + + GG + + + +L
Sbjct: 59 --TLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 116
Query: 516 AKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575
+ ++I+V TPGR+LD L I+DEAD++L F+ ++QI++ LP
Sbjct: 117 NETVHILVGTPGRVLDLASRKVADLSDC-SLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175
Query: 576 QTMLFSATTTAKTETLTKLALKKEPVYIGVDD 607
Q++LFSAT + L K P I + +
Sbjct: 176 QSLLFSATFPLTVKEFMVKHLHK-PYEINLME 206
Score = 39.2 bits (90), Expect = 9e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDD 209
Q++LFSAT + L K P I + +
Sbjct: 173 PTHQSLLFSATFPLTVKEFMVKHLHK-PYEINLME 206
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 118 bits (296), Expect = 7e-31
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 4/212 (1%)
Query: 394 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 453
TQF ++AI + F K TEIQ R IP L G +VG ++TG+GKT A+L+P
Sbjct: 1 TQFTRFP--FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP 58
Query: 454 AVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQ 513
+E I + + ++ +T + K K ++GG +Q +
Sbjct: 59 IMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 118
Query: 514 KLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPK 573
KL +I++ TPGR+ D ++ L++DEAD +LD+GF D+ QI +PK
Sbjct: 119 KLNVQPHIVIGTPGRINDFIREQALD-VHTAHILVVDEADLMLDMGFITDVDQIAARMPK 177
Query: 574 RRQTMLFSATTTAKTETLTKLALKKEPVYIGV 605
Q ++FSAT K + K ++ P ++ V
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMEN-PTFVHV 208
Score = 39.7 bits (91), Expect = 7e-04
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 175 ERRQTMLFSATTTAKTETLTKLALKKEPVYIGV 207
+ Q ++FSAT K + K ++ P ++ V
Sbjct: 177 KDLQMLVFSATIPEKLKPFLKKYMEN-PTFVHV 208
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 102 bits (254), Expect = 3e-25
Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 15/192 (7%)
Query: 395 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPA 454
+ E L + + + + G ++ QA + + G++L+ + T +GKTL +
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 455 VELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQK 514
V + + P R L+ + + K+ K SR
Sbjct: 62 VREAIKGGKS-------LYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD 114
Query: 515 LAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLL--- 571
+IIV T + ++N ++ K + CL++DE + ++ +V +
Sbjct: 115 ----CDIIVTTSEKADSLIRNRASWI-KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM 169
Query: 572 PKRRQTMLFSAT 583
K + + SAT
Sbjct: 170 NKALRVIGLSAT 181
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 101 bits (251), Expect = 6e-25
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 17/195 (8%)
Query: 415 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474
G+ + Q I +L GRD + TG GK+L + +PA + NG +++
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA---------LLLNGLTVVVS 72
Query: 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQ 534
P L L+ + I ++ P RL+
Sbjct: 73 -PLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF 131
Query: 535 NTPEFLYKNLQCLIIDEADRILDIG--FEEDMKQIVNLL--PKRRQTMLFSATTTAKT-- 588
+ N L +DEA I G F + + L M +AT T
Sbjct: 132 LEHLAHW-NPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQ 190
Query: 589 ETLTKLALKKEPVYI 603
+ + L L + I
Sbjct: 191 DIVRLLGLNDPLIQI 205
Score = 30.8 bits (68), Expect = 0.48
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 176 RRQTMLFSATTTAKT--ETLTKLALKKEPVYI 205
M +AT T + + L L + I
Sbjct: 174 TLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 97.7 bits (242), Expect = 2e-24
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 615 AGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHG 674
A +EQ YV +RF L LK N++ +VF + K +L I IHG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 675 KQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTA 734
Q +R F + IL+ TDV +RG+D+ ++ ++ Y P +P+ Y+HR+GRT
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTG 120
Query: 735 RGEGSSGHALLILRPEELGFLRYLKQA-KIPLNEFE 769
R G G A+ I+ E LRY+++A K+ + + +
Sbjct: 121 RA-GKKGKAISIINRREYKKLRYIERAMKLKIKKLK 155
Score = 29.9 bits (66), Expect = 0.63
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 217 AGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIV 248
A +EQ YV +RF L LK +V
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYGLV 33
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 97.7 bits (242), Expect = 6e-23
Identities = 41/224 (18%), Positives = 80/224 (35%), Gaps = 27/224 (12%)
Query: 538 EFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALK 597
L + L + A +L+ ++ + L + + A+ ++ K A+
Sbjct: 71 GLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAIS 130
Query: 598 --KEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSV 655
+ IG+D K + L++ ++ L++ + K++VF + +
Sbjct: 131 LLVQAKEIGLDHPKMDK----LKE------------IIREQLQRKQNSKIIVFTNYRETA 174
Query: 656 KFHHELLNYIDLPVMCIHGKQKQMKRTT--------TFFQFCNAETGILLCTDVAARGLD 707
K L + G+ + +F E +L+ T V GLD
Sbjct: 175 KKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLD 234
Query: 708 IPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEE 751
+P VD +V Y+P I R GRT R +L+ +
Sbjct: 235 VPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTR 277
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 92.7 bits (229), Expect = 2e-22
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 8/167 (4%)
Query: 610 EEATVAGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLP 668
+E T+ G++Q +V E+ +F L + ++F ++ V + E + +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 60
Query: 669 VMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIH 728
V +HG Q +R + +F + + +L+ TDV ARGLD+P V I+ YD P++ + YIH
Sbjct: 61 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 120
Query: 729 RVGRTARGEGSSGHALLILRPEELGFLRYLKQA------KIPLNEFE 769
R+GR+ R G G A+ ++ +++ LR ++Q ++P+N +
Sbjct: 121 RIGRSGR-YGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVAD 166
Score = 32.2 bits (72), Expect = 0.12
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 212 EEATVAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVA 249
+E T+ G++Q +V E+ +F L I + V
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 39
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 89.2 bits (220), Expect = 3e-21
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 618 EQGYVVCPS-EKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQ 676
+Q YV E ++ L + ++F ++ V+ L V I+
Sbjct: 2 KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 61
Query: 677 KQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARG 736
Q +R T +F + + IL+ TD+ ARG+D+ V ++ YD P + + YIHR+GR R
Sbjct: 62 PQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR- 120
Query: 737 EGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLIS 787
G G A+ + E++G +R L+ +F ++I ++ + L++
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELE---------KFYSTQIEELPSDIATLLN 162
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 92.5 bits (230), Expect = 4e-21
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 38/130 (29%)
Query: 256 QVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMPDFSTTPLE 315
+VI++K + R G +FVT +R L HY ++P+G+GG +I+ K H+MP
Sbjct: 167 KVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMP-------- 218
Query: 316 TKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISV 375
+FS+ PL + +++N+WL F ++ PL+ +
Sbjct: 219 ------------------------------AEFSSCPLNSDEEVNKWLHFYEMKAPLVCL 248
Query: 376 GTVISADVSL 385
+S D
Sbjct: 249 PVFVSRDPGF 258
Score = 45.1 bits (107), Expect = 2e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 142 VLNQGLGKYFKEVSVSFTECPNLTSHPFNLTS 173
V+ +GL F +V VS +CP+LT PF
Sbjct: 17 VMQKGLKDNFADVQVSVVDCPDLTKEPFTFPV 48
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 91.1 bits (226), Expect = 1e-20
Identities = 19/147 (12%), Positives = 38/147 (25%), Gaps = 15/147 (10%)
Query: 617 LEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQ 676
+E+ + E F L+ + + ++F S L + + + +
Sbjct: 11 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 70
Query: 677 KQMKRTT----------TFFQFCNAETGILLCTDVAARG---LDIPAVDWIVQYDPPDDP 723
T + ++ + + I P D
Sbjct: 71 DVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA 130
Query: 724 KEYIHRVGRTARGEGSSGHALLILRPE 750
R GRT RG+ G + E
Sbjct: 131 VSRTQRRGRTGRGK--PGIYRFVAPGE 155
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 82.5 bits (203), Expect = 4e-18
Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 17/219 (7%)
Query: 617 LEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQ 676
+ V +++ L + L+K +++ + + +E L
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKN------KFRIGI 53
Query: 677 KQMKRTTTFFQFCNAETGILLCT----DVAARGLDIP-AVDWIVQYDPPDDPKEYIHRVG 731
+ + +F E L+ T RGLD+P + + V P + +
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIE 109
Query: 732 RTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSK-ISDIQLQLEKLISKNY 790
L L R L + ++E K + + Q + ++ +
Sbjct: 110 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREG 169
Query: 791 FLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKH 829
+ + + + L DS+
Sbjct: 170 EVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSEL 208
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 79.7 bits (195), Expect = 7e-18
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 613 TVAGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMC 671
T+ + Q YV+C K ++ L + ++F + + K+ + V
Sbjct: 2 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSL 61
Query: 672 IHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPP------DDPKE 725
+ G+ +R + +F + + +L+ T+V ARG+D+ V +V +D P D +
Sbjct: 62 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYET 121
Query: 726 YIHRVGRTARGEGSSGHALLILRPEELGFLRYL-KQAKIPLNEFE 769
Y+HR+GRT R G G A ++ +EL L + + +
Sbjct: 122 YLHRIGRTGRF-GKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLN 165
Score = 33.8 bits (76), Expect = 0.036
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 215 TVAGLEQGYVVCPSEK-RFLLLFTFLKKNHIGEIVAWH 251
T+ + Q YV+C K ++ L IG+ + +
Sbjct: 2 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFC 39
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 80.3 bits (197), Expect = 8e-18
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 11/188 (5%)
Query: 561 EEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQG 620
E++ + +Q + T + E K+ + G D+ EA A E
Sbjct: 17 EDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS-----GYDERAYEALRAWEEAR 71
Query: 621 YVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMK 680
+ S+ + L L+++RK K+++F V ++ + I + + +
Sbjct: 72 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREE 126
Query: 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSS 740
R F ++ + V G+D+P + V +EYI R+GR R
Sbjct: 127 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP-SKG 185
Query: 741 GHALLILR 748
++
Sbjct: 186 KKEAVLYE 193
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 79.7 bits (195), Expect = 1e-17
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
Query: 621 YVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMK 680
Y++ K L ++++ R K +++ +S V+ L + H +
Sbjct: 9 YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNV 68
Query: 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSS 740
R +F + I++ T G++ P V ++V +D P + + Y GR +G
Sbjct: 69 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA-GRDGLP 127
Query: 741 GHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQ 779
A+L P ++ +LR + K + K++ +
Sbjct: 128 AEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMG 166
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 75.1 bits (183), Expect = 3e-16
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 611 EATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVM 670
E T+ G+ Q Y ++ L T K + + ++F +S V+ + + +
Sbjct: 1 ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCY 60
Query: 671 CIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRV 730
H + KQ +R F +F + L+C+D+ RG+DI AV+ ++ +D P + Y+HR+
Sbjct: 61 YSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 120
Query: 731 GRTARGEGSSGHALLILRPEELGFLRYL-KQAKIPLNEF 768
GR+ R G G A+ ++ + L + ++ +
Sbjct: 121 GRSGR-FGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 158
Score = 37.7 bits (86), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 213 EATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWH 251
E T+ G+ Q Y ++ L T K I + + +
Sbjct: 1 ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFC 39
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 71.7 bits (175), Expect = 2e-15
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 12/137 (8%)
Query: 617 LEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQ 676
+E+ + E F L+ + + ++F S L + + + +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 69
Query: 677 KQMKRTTTFFQFCNAETGILLCTDVAARGLDIPA---VDWIVQYDPPDDPKEYIHRVGRT 733
T + TD G +D P D R GRT
Sbjct: 70 DVSVIPTNGDVVV-------VATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122
Query: 734 ARGEGSSGHALLILRPE 750
RG+ G + E
Sbjct: 123 GRGK--PGIYRFVAPGE 137
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 70.9 bits (172), Expect = 7e-15
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Query: 616 GLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGK 675
GL+Q YV ++ LF L +V++F S +LL + P + IH
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 676 QKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTAR 735
Q +R + + QF + + IL+ T++ RG+DI V+ YD P+D Y+HRV R R
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 736 GEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEK 784
G+ G A+ + E + Q + +N E DI +E+
Sbjct: 121 F-GTKGLAITFVSDENDAKILNDVQDRFEVNISEL--PDEIDISSYIEQ 166
Score = 31.6 bits (70), Expect = 0.23
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 218 GLEQGYVVCPSEKRFLLLFTFLKKNHIGEIV 248
GL+Q YV ++ LF L ++V
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 31
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 70.6 bits (171), Expect = 2e-14
Identities = 28/191 (14%), Positives = 66/191 (34%), Gaps = 9/191 (4%)
Query: 415 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIII 474
+ Q E L+ TG GKTL ++ A + + G ++++
Sbjct: 6 DLIQPRIYQEVIYAKCKETNCLI-VLPTGLGKTLIAMMIAEYRLT------KYGGKVLML 58
Query: 475 SPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQ 534
+PT+ L +Q + L + G S + ++ A+ I+ ++
Sbjct: 59 APTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI--ENDL 116
Query: 535 NTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKL 594
+++ ++ DEA R + + + K + +A+ + E + ++
Sbjct: 117 LAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV 176
Query: 595 ALKKEPVYIGV 605
+I
Sbjct: 177 INNLGIEHIEY 187
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 64.4 bits (156), Expect = 2e-12
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Query: 623 VCPSEKRFLLLFTFLKK--NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMK 680
V P++ + L +++ R ++ +V + + + L + V +H + K ++
Sbjct: 10 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 69
Query: 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGS 739
R + +L+ ++ GLDIP V + D + R G +
Sbjct: 70 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 128
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 58.2 bits (140), Expect = 2e-10
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 623 VCPSEKRFLLLFTFLKKNRKK--KVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMK 680
V P+E + L L +++ + + +V + + L + +H + K
Sbjct: 10 VKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFK 69
Query: 681 RTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDP-----PDDPKEYIHRVGRTAR 735
R L+ ++ GLDIP V + D + I +GR AR
Sbjct: 70 RQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 50.3 bits (119), Expect = 1e-07
Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 13/152 (8%)
Query: 613 TVAGLEQGYVVCPSEKRFLLLFTFLKK-----NRKKKVMVFFSSCMSVKFHHELLNYIDL 667
VA V + + L + + + +L +
Sbjct: 36 CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 95
Query: 668 PVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQ-------YDPP 720
H +R F +++ T A G+++PA IV+ Y
Sbjct: 96 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR 155
Query: 721 DDPKEYIHRVGRTAR-GEGSSGHALLILRPEE 751
EY GR R G G A++I+ +
Sbjct: 156 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 46.7 bits (110), Expect = 3e-06
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 14/134 (10%)
Query: 626 SEKRFLLLFTFLKKNRKKKVMVFF-------------SSCMSVKFHHELLNYIDLPVMCI 672
R ++ F+++ + F S + + + + + + +
Sbjct: 11 PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLM 70
Query: 673 HGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHR-VG 731
HG+ Q ++ +F IL+ T V G+D+P + +V +P +H+ G
Sbjct: 71 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRG 130
Query: 732 RTARGEGSSGHALL 745
R RG + L+
Sbjct: 131 RVGRGGQEAYCFLV 144
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 38.9 bits (89), Expect = 5e-04
Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 19/154 (12%)
Query: 430 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLK 489
L +G V G+GKT L L R ++++PTR + +
Sbjct: 4 LKKGMTTVLDFHPGAGKTR------RFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 57
Query: 490 ELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLII 549
L H G I L + N + +I+
Sbjct: 58 GLDVKFHTQAFSAHGSGREV-----------IDAMCHATLTYRMLE--PTRVVNWEVIIM 104
Query: 550 DEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583
DEA + T+L +AT
Sbjct: 105 DEAHFLDPASIAARGWAAHRARANESATILMTAT 138
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 38.7 bits (89), Expect = 6e-04
Identities = 16/147 (10%), Positives = 36/147 (24%), Gaps = 25/147 (17%)
Query: 439 SAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHT 498
A TGSGK+ G +++++P+ ++ + + +
Sbjct: 14 HAPTGSGKSTKV----------PAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNI 63
Query: 499 YGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558
+ I +I DE D
Sbjct: 64 RTGVR--------------TITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHS-TDA 108
Query: 559 GFEEDMKQIVNLLPKRRQTMLFSATTT 585
+ +++ ++ AT T
Sbjct: 109 TSILGIGTVLDQAETAGARLVVLATAT 135
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 39.8 bits (92), Expect = 8e-04
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 20/157 (12%)
Query: 440 AKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTY 499
GSGKT+ + ++ ++ S + H
Sbjct: 111 GDVGSGKTVVAQLAILDNYEAGFQTAF----MVPTSILAIQHYRRTVESFSKFNIHVALL 166
Query: 500 GLIMGGASRQAEAQKLAKG-INIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDI 558
+ ++ L G I++++ T + + + +KNL +IIDE R
Sbjct: 167 IGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH------FKNLGLVIIDEQHR---F 217
Query: 559 GFEEDMKQIVNLLPKRRQ--TMLFSATTTAKTETLTK 593
G KQ L+ K + T++ SAT ++ L
Sbjct: 218 GV----KQREALMNKGKMVDTLVMSATPIPRSMALAF 250
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 37.3 bits (86), Expect = 0.006
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 22/123 (17%)
Query: 641 RKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTD 700
K+ F S + L V+ ++ K + + +L TD
Sbjct: 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT----FEREYPTIKQKKPDFILATD 90
Query: 701 VAARGLDIPAVDWI--------VQYDP----------PDDPKEYIHRVGRTARGEGSSGH 742
+A G ++ + V D R GR R G
Sbjct: 91 IAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 150
Query: 743 ALL 745
+
Sbjct: 151 SYY 153
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 35.6 bits (81), Expect = 0.013
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 31/166 (18%)
Query: 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477
+ + Q + + L + TGSGKT + + T +I+ PT
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKT----------HVAMAAINELSTPTLIVVPT 119
Query: 478 RELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP 537
L+ Q L + + + + + D
Sbjct: 120 LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVST----------------YDSAYVNA 163
Query: 538 EFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583
E L LI DE + + + + + +AT
Sbjct: 164 EKLGNRFMLLIFDEVHHLPAESYVQIAQMS-----IAPFRLGLTAT 204
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 35.3 bits (80), Expect = 0.026
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 418 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPT 477
+ Q + L R + + T +G++L + A + N + I+II PT
Sbjct: 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGK------ILIIVPT 166
Query: 478 RELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP 537
L+ Q + + H I G ++ K ++V T + P
Sbjct: 167 TALTTQMADDFVDYRLFSHAMIKKIGG---GASKDDKYKNDAPVVVGT----WQTVVKQP 219
Query: 538 EFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSAT 583
+ + ++ DE + + I++ L S +
Sbjct: 220 KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGS 261
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 32.6 bits (74), Expect = 0.14
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 478 RELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTP 537
++ V+KE +I G S + +LA+ + + AT LD+ ++
Sbjct: 112 EKIMRAILEVVKE------KNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSR 165
Query: 538 EFLYKNLQCLI 548
+ + KN++ L
Sbjct: 166 KEVIKNMRKLA 176
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 31.4 bits (71), Expect = 0.24
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 640 NRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCT 699
+ V+V + + + +LL +P ++ K + + + + + T
Sbjct: 32 MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KGAVTIAT 89
Query: 700 DVAARGLDI---PAVD-----WIVQYDPPDDPKEYIHRVGRTAR 735
++A RG DI V +V + + + GR+ R
Sbjct: 90 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 133
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 31.0 bits (70), Expect = 0.46
Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 26/168 (15%)
Query: 436 LVGSAKTGSGK-TLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494
LVG ++GSGK T+A L+ I + +G + + L Q V + + +
Sbjct: 46 LVG--RSGSGKSTIASLITRFYDIDEGHIL-MDGHDLREYTL-ASLRNQVALVSQNVHLF 101
Query: 495 HHHTYGLIMGGASRQA------EAQKLAKGINIIVATPGRLLDHLQNTPEFL-------- 540
+ I + + EA ++A ++ I L + L
Sbjct: 102 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 161
Query: 541 ------YKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582
++ LI+DEA LD E ++ ++ L K R T L A
Sbjct: 162 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIA 208
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 30.7 bits (69), Expect = 0.76
Identities = 29/162 (17%), Positives = 48/162 (29%), Gaps = 28/162 (17%)
Query: 436 LVGSAKTGSGK-TLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKY 494
+ G TGSGK +L L+ L + + GII S Q F +
Sbjct: 67 ITG--STGSGKTSLLMLI--------LGELEASE-GIIKHSGRVSFCSQ-FSWIMPGTIK 114
Query: 495 HHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFL-------------- 540
+ +G+ R K + I + L L
Sbjct: 115 ENIIFGVSYDEY-RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV 173
Query: 541 YKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582
YK+ ++D LD+ EE + + +T +
Sbjct: 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 215
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 0.89
Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 17/167 (10%)
Query: 427 IPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFG 486
+P E R L+ + TG+GK++ A + G ++I+ P ++ +
Sbjct: 44 MPRDAEPRHLLVNGATGTGKSVLLRELAYTGL-------LRGDRMVIVDPNGDMLSKFGR 96
Query: 487 ---VLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKN 543
++ + + Q+ A +++ + + L +
Sbjct: 97 DKDIILNPYDQRTKGW-SFFNEIRNDYDWQRYAL--SVVPRGKTDEAEEWASYGRLLLRE 153
Query: 544 LQCLIIDEADR----ILDIGFEEDMKQIVNLLPKRRQTMLFSATTTA 586
+ + + L LF+ + A
Sbjct: 154 TAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEA 200
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.1 bits (68), Expect = 0.95
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 21/165 (12%)
Query: 436 LVGSAKTGSGK-TLAFLVPAVELIYN--LKFMPRNGTGIIIISPTRELSM-QTFGVLKEL 491
VG +G GK TL L+P + + + N + S ++ + Q +L
Sbjct: 49 FVG--MSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 106
Query: 492 MKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFL----------- 540
+ G EA K+A + I+ P + L
Sbjct: 107 TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166
Query: 541 ---YKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSA 582
N LI+DEA LD+ E +++ +++L K R T L A
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR-TTLIVA 210
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 28.3 bits (63), Expect = 1.6
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 519 INIIVATPGRLLDHLQNTPEFLY---KNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRR 575
I I++ T G + L T E L +N+ + + E + L +
Sbjct: 2 IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET--LIEKYNAQLAKLDTTK 59
Query: 576 QTMLFSATTTAKT-ETLTKLALKKEPVYI 603
+ T +++ + KE +
Sbjct: 60 GVLFLVDTWGGSPFNAASRIVVDKEHYEV 88
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 29.2 bits (64), Expect = 1.9
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 443 GSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTY 499
GSGKT L+ P N I+ I+ T + + + ++ L+
Sbjct: 34 GSGKTRVLTHRIAYLMAEKHVAPWN---ILAITFTNKAAREMRERVQSLLGGAAEDV 87
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 27.6 bits (61), Expect = 4.8
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 205 IGVDDTKEEA--TVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLLLQVIKIKV 262
I VD+ A + G +V + + FLK+N G + + L+ ++
Sbjct: 27 IEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRI 86
Query: 263 QTRIGKEDFVTSVRNVLAAHYKDQPVG---LGGVILIEN 298
+ FV +++ + +G G +++E
Sbjct: 87 SGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVET 125
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.8 bits (60), Expect = 5.2
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 443 GSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHH 496
GSGKT LI + R+ I ++ T + + + + + +
Sbjct: 24 GSGKTRVITNKIAHLIRGCGYQARH---IAAVTFTNKAAREMKERVGQTLGRKE 74
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.2 bits (60), Expect = 7.6
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 539 FLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLF 580
L N + +++DE + G D+ V L + T L
Sbjct: 164 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 205
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 25.3 bits (55), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 441 KTGSGKTLAFLVPAVELIYNLKFMPRNGTGI 471
KT +GKT+ V + I N+K ++ GI
Sbjct: 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,090,338
Number of extensions: 148989
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 70
Length of query: 838
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 745
Effective length of database: 1,130,706
Effective search space: 842375970
Effective search space used: 842375970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)