Diaphorina citri psyllid: psy12983

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------84
MTRFYKELGCKLKSDGGKYPPSYECPTPLLVSVSNFCPFASFAEATEKTCLVKGKTYQIGDKIQAEPGPKLPVPTLNVPSIWESLLDRIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPFVLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLSIPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTRII
ccHHHHHHccCEcccccccccccccccccHHHHcccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccCECccccccHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccEEEEEccccHHHHHHHHHccccccEEEEEccccccccccccCEEEEEEccccHHHHHHHHHHHccccEEEEEHHHHHccccccEEEccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccCCcccccccccccccccccccccEEccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccCEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHccccEEEEcccHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEEccccccccccccCEEEEEEccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHcccccEEEEccccccccccccccEEEEccccccccccEEccccccccccccccEEEEccHHHHHHHHHHHHcccccCEECcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccc
**RFY**LGCKLKSDGGKYPPSYECPTPLLVSVSNFCPFASFAEATEKTCLVKGKTYQIGDKIQAEPGPKLPVPTLNVPSIWESLLDRIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPFVLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEW*************GT*I**DVSLSIPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTRII
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MTRFYKELGCKLKSDGGKYPPSYECPTPLLVSVSNFCPFASFAEATEKTCLVKGKTYQIGDKIQAEPGPKLPVPTLNVPSIWESLLDRIVAELTVYPPESFTLSNPSKLTHNDGQSHLEEHKLTHNDATPLLVSVSIFCPFVLNQGLGKYFKEVSVSFTECPNLTSHPFNLTSAERRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNHIGEIVAWHVLLLQVIKIKVQTRIGKEDFVTSVRNVLAAHYKDQPVGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNVRSNYIGLGGVILIENAPAKHHVMPDFSTTPLETKDQLNEWLVFKDLTPPLISVGTVISADVSLSIPSILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGTGIIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQAEAQKLAKGINIIVATPGRLLDHLQNTPEFLYKNLQCLIIDEADRILDIGFEEDMKQIVNLLPKRRQTMLFSATTTAKTETLTKLALKKEPVYIGVDDTKEEATVAGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKFHHELLNYIDLPVMCIHGKQKQMKRTTTFFQFCNAETGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLRYLKQAKIPLNEFEFSWSKISDIQLQLEKLISKNYFLNMSGKEAFKAYVRAYDSHHLKQIFDIDTMDLGKDSKHTCVLMTRII

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
ATP-dependent RNA helicase DDX18 Probable RNA-dependent helicase.confidentQ8K363
ATP-dependent RNA helicase DDX18 Probable RNA-dependent helicase.confidentQ9NVP1
Probable ATP-dependent RNA helicase pitchoune Probable RNA-dependent helicase. Functions in cell growth and proliferation. May have a role in ribosome biogenesis and, consequently, in protein biosynthesis.confidentQ9VD51

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0030687 [CC]preribosome, large subunit precursorprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0030686 [CC]90S preribosomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0071840 [BP]cellular component organization or biogenesisprobableGO:0008150
GO:0008283 [BP]cell proliferationprobableGO:0008150, GO:0044699
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0004004 [MF]ATP-dependent RNA helicase activityprobableGO:0016787, GO:0016818, GO:0008026, GO:0042623, GO:0003824, GO:0017111, GO:0016817, GO:0004386, GO:0070035, GO:0003724, GO:0003674, GO:0016887, GO:0008186, GO:0016462
GO:0005524 [MF]ATP bindingprobableGO:0043168, GO:0003674, GO:0005488, GO:0030554, GO:0035639, GO:0097159, GO:1901363, GO:0043167, GO:0036094, GO:0032553, GO:0032559, GO:0001883, GO:0032549, GO:0032555, GO:0017076, GO:0000166, GO:0032550, GO:1901265, GO:0001882
GO:0006139 [BP]nucleobase-containing compound metabolic processprobableGO:0044238, GO:0009987, GO:0006725, GO:0044237, GO:0071704, GO:0034641, GO:0006807, GO:0008150, GO:0008152, GO:1901360, GO:0046483
GO:0005635 [CC]nuclear envelopeprobableGO:0005575, GO:0005623, GO:0005634, GO:0044464, GO:0031967, GO:0031975, GO:0044446, GO:0043229, GO:0044428, GO:0012505, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0016049 [BP]cell growthprobableGO:0008150, GO:0009987, GO:0044763, GO:0040007, GO:0044699
GO:0003723 [MF]RNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0030099 [BP]myeloid cell differentiationprobableGO:0032502, GO:0002376, GO:0009987, GO:0044707, GO:0048856, GO:0048869, GO:0032501, GO:0030154, GO:0044767, GO:0048513, GO:0044763, GO:0008150, GO:0048731, GO:0030097, GO:0048534, GO:0007275, GO:0044699, GO:0002520

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.13RNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3LY5, chain A
Confidence level:very confident
Coverage over the Query: 391-603
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Template: 3I5X, chain A
Confidence level:very confident
Coverage over the Query: 394-833
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Template: 1XCR, chain A
Confidence level:very confident
Coverage over the Query: 142-246,257-320
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Template: 3EIQ, chain A
Confidence level:very confident
Coverage over the Query: 104-158,174-284
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Template: 2PL3, chain A
Confidence level:very confident
Coverage over the Query: 72-158,174-207
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Template: 2EYQ, chain A
Confidence level:confident
Coverage over the Query: 333-751
View the alignment between query and template
View the model in PyMOL