Query psy12984
Match_columns 178
No_of_seqs 212 out of 1432
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 16:10:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.9 3E-26 1E-30 191.2 12.2 111 51-165 77-189 (300)
2 2db3_A ATP-dependent RNA helic 99.9 9.7E-24 3.3E-28 183.4 13.7 121 43-168 36-159 (434)
3 3fe2_A Probable ATP-dependent 99.9 1.3E-23 4.3E-28 169.0 10.4 118 46-168 12-132 (242)
4 3dkp_A Probable ATP-dependent 99.9 5.9E-23 2E-27 164.7 11.6 115 49-167 11-127 (245)
5 1q0u_A Bstdead; DEAD protein, 99.9 9E-23 3.1E-27 161.3 9.7 104 66-173 4-107 (219)
6 3fmp_B ATP-dependent RNA helic 99.9 8.1E-23 2.8E-27 178.6 10.0 109 53-165 79-189 (479)
7 1wrb_A DJVLGB; RNA helicase, D 99.9 7.1E-23 2.4E-27 165.2 7.8 117 47-166 5-128 (253)
8 3ly5_A ATP-dependent RNA helic 99.9 2.1E-22 7E-27 164.5 9.4 107 62-168 48-156 (262)
9 3iuy_A Probable ATP-dependent 99.9 9.5E-22 3.2E-26 156.1 12.6 95 66-162 19-118 (228)
10 2pl3_A Probable ATP-dependent 99.9 5.8E-22 2E-26 158.1 11.0 101 65-167 24-126 (236)
11 3ber_A Probable ATP-dependent 99.9 6.3E-22 2.2E-26 160.5 11.1 100 65-168 42-141 (249)
12 1vec_A ATP-dependent RNA helic 99.9 4.9E-22 1.7E-26 154.9 10.0 96 66-165 3-98 (206)
13 2i4i_A ATP-dependent RNA helic 99.9 7.1E-22 2.4E-26 168.1 11.7 109 53-166 5-129 (417)
14 1t6n_A Probable ATP-dependent 99.9 8.5E-22 2.9E-26 155.4 10.4 97 65-165 13-109 (220)
15 2oxc_A Probable ATP-dependent 99.9 8.7E-22 3E-26 157.1 10.5 97 65-165 23-119 (230)
16 3bor_A Human initiation factor 99.9 6.5E-22 2.2E-26 158.7 8.6 98 66-167 30-127 (237)
17 1qde_A EIF4A, translation init 99.9 1.9E-21 6.5E-26 153.6 10.8 98 66-167 14-111 (224)
18 2gxq_A Heat resistant RNA depe 99.8 5E-21 1.7E-25 149.1 10.9 96 67-164 2-98 (207)
19 3fht_A ATP-dependent RNA helic 99.8 4.4E-21 1.5E-25 162.5 11.2 110 52-165 11-122 (412)
20 2j0s_A ATP-dependent RNA helic 99.8 1.3E-20 4.4E-25 160.5 11.2 99 65-167 36-134 (410)
21 3i5x_A ATP-dependent RNA helic 99.8 7.2E-20 2.5E-24 162.6 11.8 99 66-164 68-172 (563)
22 1xti_A Probable ATP-dependent 99.8 1E-19 3.6E-24 153.2 11.0 97 65-165 7-103 (391)
23 3pey_A ATP-dependent RNA helic 99.8 6.9E-20 2.3E-24 153.8 9.8 98 66-167 5-104 (395)
24 1s2m_A Putative ATP-dependent 99.8 1.1E-19 3.9E-24 153.9 10.0 98 66-167 21-118 (400)
25 3sqw_A ATP-dependent RNA helic 99.8 2E-19 6.8E-24 161.2 12.1 99 66-164 17-121 (579)
26 3eiq_A Eukaryotic initiation f 99.8 2.6E-19 9E-24 151.8 11.1 99 66-168 40-138 (414)
27 1fuu_A Yeast initiation factor 99.8 1.4E-19 4.8E-24 152.4 7.9 98 66-167 21-118 (394)
28 1hv8_A Putative ATP-dependent 99.8 5E-19 1.7E-23 147.2 9.2 96 66-166 6-102 (367)
29 2z0m_A 337AA long hypothetical 99.7 5.6E-18 1.9E-22 139.5 10.5 86 75-168 1-86 (337)
30 3oiy_A Reverse gyrase helicase 99.7 7.2E-17 2.5E-21 138.1 9.2 80 78-163 9-89 (414)
31 2zj8_A DNA helicase, putative 99.7 9.2E-17 3.2E-21 147.3 10.0 90 67-162 2-92 (720)
32 3l9o_A ATP-dependent RNA helic 99.7 1.3E-17 4.4E-22 160.0 3.5 90 67-163 163-252 (1108)
33 2va8_A SSO2462, SKI2-type heli 99.7 1.9E-16 6.3E-21 145.0 10.8 90 66-161 8-98 (715)
34 2v1x_A ATP-dependent DNA helic 99.7 1.1E-16 3.8E-21 144.8 8.1 82 70-161 25-107 (591)
35 2p6r_A Afuhel308 helicase; pro 99.7 4.4E-17 1.5E-21 149.1 4.9 90 67-161 2-91 (702)
36 1oyw_A RECQ helicase, ATP-depe 99.6 8.6E-17 2.9E-21 143.3 5.2 85 67-161 3-88 (523)
37 1tf5_A Preprotein translocase 99.6 4.4E-16 1.5E-20 144.9 8.7 76 85-168 79-154 (844)
38 2ykg_A Probable ATP-dependent 99.6 4E-16 1.4E-20 141.5 8.1 87 80-166 3-89 (696)
39 3fho_A ATP-dependent RNA helic 99.6 1.3E-16 4.5E-21 141.1 4.3 91 74-166 125-217 (508)
40 4a2p_A RIG-I, retinoic acid in 99.6 1E-15 3.5E-20 134.3 9.3 83 86-168 3-85 (556)
41 3tbk_A RIG-I helicase domain; 99.6 1.3E-15 4.4E-20 133.2 9.3 79 90-168 4-82 (555)
42 1gku_B Reverse gyrase, TOP-RG; 99.6 3.5E-15 1.2E-19 142.6 10.4 82 79-167 46-128 (1054)
43 4a2q_A RIG-I, retinoic acid in 99.6 3.8E-15 1.3E-19 138.2 10.1 84 85-168 243-326 (797)
44 4ddu_A Reverse gyrase; topoiso 99.6 5.3E-15 1.8E-19 141.9 10.5 78 79-162 67-145 (1104)
45 2fsf_A Preprotein translocase 99.5 5.5E-15 1.9E-19 137.5 6.4 75 86-168 71-145 (853)
46 4a2w_A RIG-I, retinoic acid in 99.5 9.7E-15 3.3E-19 138.0 8.2 85 83-167 241-325 (936)
47 4f92_B U5 small nuclear ribonu 99.5 1.4E-14 4.7E-19 143.9 9.2 95 75-175 911-1006(1724)
48 1nkt_A Preprotein translocase 99.5 1.8E-14 6E-19 134.6 8.8 77 85-169 107-183 (922)
49 3b6e_A Interferon-induced heli 99.5 3.5E-14 1.2E-18 110.3 7.7 79 86-164 29-109 (216)
50 1gm5_A RECG; helicase, replica 99.5 4.4E-14 1.5E-18 131.4 8.9 83 79-167 358-446 (780)
51 2ipc_A Preprotein translocase 99.5 4.3E-14 1.5E-18 132.2 8.8 77 86-170 76-152 (997)
52 2jlq_A Serine protease subunit 99.5 1.3E-14 4.4E-19 126.8 4.9 68 87-159 1-69 (451)
53 2whx_A Serine protease/ntpase/ 99.5 3.1E-15 1.1E-19 136.0 0.7 80 75-159 157-236 (618)
54 4f92_B U5 small nuclear ribonu 99.5 4.8E-14 1.6E-18 140.1 8.7 81 87-167 76-163 (1724)
55 2wv9_A Flavivirin protease NS2 99.4 1.4E-14 4.7E-19 132.9 1.3 76 82-161 202-293 (673)
56 4gl2_A Interferon-induced heli 99.4 1.6E-13 5.6E-18 124.4 6.6 75 90-164 7-83 (699)
57 2xgj_A ATP-dependent RNA helic 99.4 3.2E-13 1.1E-17 128.6 8.1 75 83-163 80-154 (1010)
58 3llm_A ATP-dependent RNA helic 99.4 1E-12 3.5E-17 105.0 9.0 87 76-162 47-133 (235)
59 4a4z_A Antiviral helicase SKI2 99.4 8.3E-13 2.8E-17 125.7 7.9 73 85-163 35-107 (997)
60 2eyq_A TRCF, transcription-rep 99.3 4.1E-12 1.4E-16 122.4 9.8 86 75-166 588-680 (1151)
61 1rif_A DAR protein, DNA helica 99.3 2.2E-12 7.6E-17 105.4 6.4 70 90-163 113-182 (282)
62 2oca_A DAR protein, ATP-depend 99.3 2.3E-12 7.8E-17 113.0 6.7 72 88-163 111-182 (510)
63 2fwr_A DNA repair protein RAD2 99.3 8.8E-12 3E-16 108.2 9.6 64 90-161 93-156 (472)
64 3crv_A XPD/RAD3 related DNA he 99.3 3.1E-12 1.1E-16 114.3 5.9 70 87-165 1-74 (551)
65 1wp9_A ATP-dependent RNA helic 99.3 9.5E-12 3.2E-16 105.7 7.7 69 90-163 9-77 (494)
66 2z83_A Helicase/nucleoside tri 99.2 6.4E-12 2.2E-16 110.0 6.3 57 99-159 15-71 (459)
67 4a15_A XPD helicase, ATP-depen 99.2 1.6E-11 5.3E-16 111.6 7.8 72 90-165 3-78 (620)
68 1yks_A Genome polyprotein [con 99.2 1E-11 3.6E-16 108.2 5.8 57 101-161 4-60 (440)
69 2fz4_A DNA repair protein RAD2 99.2 5E-11 1.7E-15 95.8 8.5 63 90-160 93-155 (237)
70 2vl7_A XPD; helicase, unknown 99.2 2.4E-11 8.1E-16 108.5 6.8 67 86-161 4-74 (540)
71 2xau_A PRE-mRNA-splicing facto 99.2 7.5E-11 2.6E-15 109.6 8.9 90 66-160 72-162 (773)
72 2v6i_A RNA helicase; membrane, 99.1 1.3E-10 4.5E-15 100.9 6.3 52 104-159 1-52 (431)
73 3o8b_A HCV NS3 protease/helica 99.0 1.2E-10 4.2E-15 106.6 4.4 64 91-162 218-281 (666)
74 3h1t_A Type I site-specific re 98.9 3.9E-10 1.3E-14 100.8 3.3 72 90-162 178-260 (590)
75 3rc3_A ATP-dependent RNA helic 98.8 4.6E-09 1.6E-13 96.4 7.6 52 101-161 151-202 (677)
76 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 2.9E-09 1E-13 101.7 4.4 72 89-163 270-355 (1038)
77 3jux_A Protein translocase sub 98.7 6.1E-08 2.1E-12 89.6 10.5 80 86-173 72-151 (822)
78 1w36_D RECD, exodeoxyribonucle 98.4 2.5E-07 8.5E-12 83.7 6.8 71 92-165 151-223 (608)
79 1z63_A Helicase of the SNF2/RA 98.4 3.5E-07 1.2E-11 79.7 7.4 70 90-163 37-110 (500)
80 3dmq_A RNA polymerase-associat 98.3 1.1E-06 3.7E-11 83.4 7.0 70 89-162 152-223 (968)
81 1z3i_X Similar to RAD54-like; 97.7 8.3E-05 2.9E-09 67.4 8.5 74 90-164 55-139 (644)
82 3mwy_W Chromo domain-containin 97.7 4.7E-05 1.6E-09 70.7 6.6 70 90-162 236-309 (800)
83 3lfu_A DNA helicase II; SF1 he 97.6 0.00033 1.1E-08 62.7 9.7 73 89-164 8-80 (647)
84 1c4o_A DNA nucleotide excision 97.2 0.00048 1.6E-08 62.9 6.1 67 87-162 6-77 (664)
85 1uaa_A REP helicase, protein ( 97.1 0.0014 4.8E-08 59.3 8.7 72 90-164 2-73 (673)
86 2gk6_A Regulator of nonsense t 97.1 0.0013 4.6E-08 59.3 8.0 67 90-160 180-246 (624)
87 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0033 1.1E-07 57.7 9.8 73 89-164 10-82 (724)
88 3u4q_A ATP-dependent helicase/ 97.0 0.0017 5.8E-08 63.0 8.3 71 90-162 10-81 (1232)
89 4b3f_X DNA-binding protein smu 96.9 0.002 7E-08 58.2 7.9 65 91-160 190-255 (646)
90 3upu_A ATP-dependent DNA helic 96.9 0.0019 6.6E-08 56.0 7.2 70 84-157 19-93 (459)
91 2xzl_A ATP-dependent helicase 96.9 0.0024 8.2E-08 59.5 8.1 68 90-161 360-427 (802)
92 2wjy_A Regulator of nonsense t 96.8 0.0032 1.1E-07 58.7 8.1 67 90-160 356-422 (800)
93 3e1s_A Exodeoxyribonuclease V, 96.5 0.0072 2.5E-07 54.2 8.1 62 90-156 189-250 (574)
94 3cpe_A Terminase, DNA packagin 96.0 0.02 6.7E-07 51.3 8.1 74 90-166 163-236 (592)
95 2o0j_A Terminase, DNA packagin 95.7 0.035 1.2E-06 47.5 8.1 74 90-166 163-236 (385)
96 2d7d_A Uvrabc system protein B 95.3 0.016 5.4E-07 52.8 4.9 65 90-162 12-81 (661)
97 3ec2_A DNA replication protein 93.3 0.21 7.3E-06 36.9 6.5 19 104-122 37-55 (180)
98 1e9r_A Conjugal transfer prote 93.0 0.12 4.2E-06 43.9 5.3 49 99-152 47-95 (437)
99 2zan_A Vacuolar protein sortin 91.8 0.077 2.6E-06 45.7 2.5 54 64-122 129-184 (444)
100 3vkw_A Replicase large subunit 91.7 0.3 1E-05 42.6 6.1 45 106-160 162-206 (446)
101 3co5_A Putative two-component 90.9 0.12 4.3E-06 37.1 2.5 20 102-121 24-43 (143)
102 3n70_A Transport activator; si 90.8 0.16 5.4E-06 36.6 3.0 21 102-122 21-41 (145)
103 3vfd_A Spastin; ATPase, microt 89.9 0.15 5E-06 42.9 2.5 19 104-122 147-165 (389)
104 3h4m_A Proteasome-activating n 89.2 0.21 7.3E-06 39.5 2.8 19 103-121 49-67 (285)
105 3uk6_A RUVB-like 2; hexameric 88.5 0.74 2.5E-05 37.6 5.7 19 104-122 69-87 (368)
106 1lv7_A FTSH; alpha/beta domain 88.2 0.59 2E-05 36.4 4.7 18 105-122 45-62 (257)
107 2oap_1 GSPE-2, type II secreti 88.0 0.37 1.3E-05 42.5 3.7 21 102-122 257-277 (511)
108 3cf0_A Transitional endoplasmi 87.5 0.79 2.7E-05 36.9 5.2 19 103-121 47-65 (301)
109 2qp9_X Vacuolar protein sortin 87.3 0.19 6.4E-06 41.9 1.3 18 105-122 84-101 (355)
110 4b4t_M 26S protease regulatory 87.2 0.38 1.3E-05 41.7 3.3 53 64-121 176-231 (434)
111 1jbk_A CLPB protein; beta barr 87.1 0.3 1E-05 35.2 2.3 17 105-121 43-59 (195)
112 3iij_A Coilin-interacting nucl 86.8 0.38 1.3E-05 35.4 2.7 22 101-122 7-28 (180)
113 2qz4_A Paraplegin; AAA+, SPG7, 86.6 0.77 2.6E-05 35.5 4.5 18 104-121 38-55 (262)
114 3eie_A Vacuolar protein sortin 86.5 0.3 1E-05 39.8 2.2 49 65-121 14-67 (322)
115 2dr3_A UPF0273 protein PH0284; 86.4 1.2 3.9E-05 34.0 5.4 22 102-123 20-41 (247)
116 2kjq_A DNAA-related protein; s 86.1 0.32 1.1E-05 35.5 1.9 19 104-122 35-53 (149)
117 1xwi_A SKD1 protein; VPS4B, AA 86.0 1.1 3.9E-05 36.6 5.5 18 105-122 45-62 (322)
118 3syl_A Protein CBBX; photosynt 86.0 0.43 1.5E-05 38.0 2.8 19 104-122 66-84 (309)
119 1w36_B RECB, exodeoxyribonucle 86.0 2.2 7.5E-05 41.2 8.1 59 103-162 15-80 (1180)
120 2zts_A Putative uncharacterize 85.5 1 3.5E-05 34.3 4.7 18 104-121 29-46 (251)
121 3bos_A Putative DNA replicatio 85.4 0.41 1.4E-05 36.2 2.3 19 104-122 51-69 (242)
122 2eyu_A Twitching motility prot 85.3 0.58 2E-05 37.4 3.3 21 102-122 22-42 (261)
123 1kgd_A CASK, peripheral plasma 85.2 0.39 1.4E-05 35.6 2.1 20 103-122 3-22 (180)
124 2p65_A Hypothetical protein PF 85.1 0.33 1.1E-05 35.1 1.6 18 105-122 43-60 (187)
125 3te6_A Regulatory protein SIR3 84.8 0.31 1E-05 40.5 1.4 27 104-131 44-70 (318)
126 1u0j_A DNA replication protein 84.4 1.2 4E-05 36.2 4.7 43 78-123 74-122 (267)
127 2c9o_A RUVB-like 1; hexameric 84.4 1.6 5.5E-05 37.4 5.9 19 104-122 62-80 (456)
128 3nbx_X ATPase RAVA; AAA+ ATPas 84.2 0.77 2.6E-05 40.4 3.8 42 79-121 16-57 (500)
129 2bjv_A PSP operon transcriptio 84.2 0.63 2.2E-05 36.4 3.0 19 103-121 27-45 (265)
130 4ag6_A VIRB4 ATPase, type IV s 83.5 1.3 4.3E-05 37.0 4.8 41 104-149 34-74 (392)
131 2x8a_A Nuclear valosin-contain 83.3 0.36 1.2E-05 38.8 1.2 53 65-122 6-61 (274)
132 1qhx_A CPT, protein (chloramph 83.1 0.63 2.1E-05 33.9 2.4 17 105-121 3-19 (178)
133 2w58_A DNAI, primosome compone 82.9 0.59 2E-05 34.9 2.2 17 106-122 55-71 (202)
134 1ixz_A ATP-dependent metallopr 82.7 0.7 2.4E-05 35.9 2.7 16 106-121 50-65 (254)
135 3pfi_A Holliday junction ATP-d 82.6 2.2 7.5E-05 34.4 5.8 18 105-122 55-72 (338)
136 4b4t_J 26S protease regulatory 82.1 0.85 2.9E-05 39.2 3.1 54 64-122 143-199 (405)
137 1ofh_A ATP-dependent HSL prote 81.9 0.72 2.5E-05 36.5 2.5 18 104-121 49-66 (310)
138 3b9p_A CG5977-PA, isoform A; A 81.9 0.63 2.2E-05 37.0 2.1 19 104-122 53-71 (297)
139 3vaa_A Shikimate kinase, SK; s 81.6 0.73 2.5E-05 34.6 2.3 18 104-121 24-41 (199)
140 1l8q_A Chromosomal replication 81.5 4.4 0.00015 32.5 7.2 19 104-122 36-54 (324)
141 2chg_A Replication factor C sm 81.5 0.8 2.7E-05 33.7 2.5 16 106-121 39-54 (226)
142 2qor_A Guanylate kinase; phosp 81.4 0.75 2.6E-05 34.7 2.3 20 102-121 9-28 (204)
143 2q6t_A DNAB replication FORK h 81.4 3.9 0.00013 34.9 7.1 30 100-130 195-224 (444)
144 2qmh_A HPR kinase/phosphorylas 81.3 0.69 2.4E-05 36.2 2.1 20 103-122 32-52 (205)
145 2j41_A Guanylate kinase; GMP, 81.2 0.71 2.4E-05 34.3 2.1 20 103-122 4-23 (207)
146 3d8b_A Fidgetin-like protein 1 81.0 2.1 7.1E-05 35.4 5.1 19 104-122 116-134 (357)
147 3hws_A ATP-dependent CLP prote 81.0 0.76 2.6E-05 37.9 2.4 19 104-122 50-68 (363)
148 4b4t_L 26S protease subunit RP 80.9 0.63 2.2E-05 40.4 1.9 54 64-122 176-232 (437)
149 2ius_A DNA translocase FTSK; n 80.9 2.3 7.8E-05 37.6 5.5 27 105-131 167-193 (512)
150 3vkg_A Dynein heavy chain, cyt 80.7 1.2 3.9E-05 47.5 4.0 48 75-123 873-924 (3245)
151 1lvg_A Guanylate kinase, GMP k 80.7 0.92 3.1E-05 34.3 2.6 19 104-122 3-21 (198)
152 2gza_A Type IV secretion syste 80.6 0.8 2.7E-05 38.3 2.4 21 102-122 172-192 (361)
153 1ojl_A Transcriptional regulat 80.6 1.1 3.6E-05 36.5 3.1 19 103-121 23-41 (304)
154 3tau_A Guanylate kinase, GMP k 80.5 0.75 2.6E-05 35.0 2.0 19 104-122 7-25 (208)
155 3trf_A Shikimate kinase, SK; a 80.4 0.82 2.8E-05 33.5 2.2 17 105-121 5-21 (185)
156 3bh0_A DNAB-like replicative h 80.1 4.2 0.00014 33.0 6.6 23 100-122 63-85 (315)
157 1zp6_A Hypothetical protein AT 80.1 0.72 2.5E-05 34.0 1.8 20 102-121 6-25 (191)
158 1p9r_A General secretion pathw 79.9 0.67 2.3E-05 39.8 1.7 19 104-122 166-184 (418)
159 3lw7_A Adenylate kinase relate 79.8 0.82 2.8E-05 32.6 2.0 15 107-121 3-17 (179)
160 1kag_A SKI, shikimate kinase I 79.8 1 3.5E-05 32.6 2.5 17 105-121 4-20 (173)
161 2r44_A Uncharacterized protein 79.6 0.54 1.8E-05 38.1 1.0 21 101-121 42-62 (331)
162 3hjh_A Transcription-repair-co 79.6 4 0.00014 35.7 6.6 51 104-162 13-63 (483)
163 2v1u_A Cell division control p 79.4 0.85 2.9E-05 37.1 2.2 19 104-122 43-61 (387)
164 3tr0_A Guanylate kinase, GMP k 79.4 1 3.4E-05 33.5 2.4 19 104-122 6-24 (205)
165 1ex7_A Guanylate kinase; subst 79.3 0.84 2.9E-05 34.8 2.0 16 106-121 2-17 (186)
166 2w0m_A SSO2452; RECA, SSPF, un 79.3 3.2 0.00011 31.0 5.3 21 102-122 20-40 (235)
167 2qgz_A Helicase loader, putati 79.2 0.84 2.9E-05 37.2 2.1 18 105-122 152-169 (308)
168 3ney_A 55 kDa erythrocyte memb 79.1 0.93 3.2E-05 34.9 2.2 20 103-122 17-36 (197)
169 1iy2_A ATP-dependent metallopr 78.9 0.99 3.4E-05 35.7 2.4 16 106-121 74-89 (278)
170 1kht_A Adenylate kinase; phosp 78.6 1 3.5E-05 32.9 2.2 17 105-121 3-19 (192)
171 4b4t_K 26S protease regulatory 78.5 0.87 3E-05 39.4 2.0 54 64-122 167-223 (428)
172 1d2n_A N-ethylmaleimide-sensit 78.5 0.88 3E-05 35.8 1.9 18 105-122 64-81 (272)
173 1y63_A LMAJ004144AAA protein; 78.3 1.1 3.7E-05 33.2 2.3 18 104-121 9-26 (184)
174 2b8t_A Thymidine kinase; deoxy 78.0 3.5 0.00012 32.2 5.3 23 105-127 12-34 (223)
175 3b85_A Phosphate starvation-in 78.0 1.5 5.2E-05 33.7 3.1 29 94-122 11-39 (208)
176 3foz_A TRNA delta(2)-isopenten 77.8 0.86 3E-05 37.9 1.7 16 107-122 12-27 (316)
177 3exa_A TRNA delta(2)-isopenten 77.8 0.87 3E-05 38.0 1.7 16 107-122 5-20 (322)
178 3a8t_A Adenylate isopentenyltr 77.6 0.88 3E-05 38.2 1.7 17 105-121 40-56 (339)
179 3u4q_B ATP-dependent helicase/ 77.5 2.3 7.8E-05 40.9 4.8 39 109-149 5-43 (1166)
180 2pt7_A CAG-ALFA; ATPase, prote 77.4 1.2 4.3E-05 36.7 2.6 20 102-121 168-187 (330)
181 2ze6_A Isopentenyl transferase 77.4 0.92 3.1E-05 35.8 1.7 14 108-121 4-17 (253)
182 2iut_A DNA translocase FTSK; n 77.3 3.4 0.00012 37.1 5.5 27 105-131 214-240 (574)
183 2ewv_A Twitching motility prot 77.1 1.1 3.8E-05 37.6 2.2 21 102-122 133-153 (372)
184 4gp7_A Metallophosphoesterase; 77.0 1 3.5E-05 33.1 1.8 21 103-123 7-27 (171)
185 1hqc_A RUVB; extended AAA-ATPa 76.9 0.98 3.3E-05 36.1 1.8 18 105-122 38-55 (324)
186 3t15_A Ribulose bisphosphate c 76.6 1.2 4E-05 35.9 2.2 18 104-121 35-52 (293)
187 4b4t_H 26S protease regulatory 76.6 0.84 2.9E-05 40.0 1.4 52 65-121 205-259 (467)
188 3a00_A Guanylate kinase, GMP k 76.6 1.4 4.7E-05 32.7 2.4 17 106-122 2-18 (186)
189 1z6g_A Guanylate kinase; struc 76.2 1.4 4.9E-05 33.7 2.5 21 102-122 20-40 (218)
190 3kb2_A SPBC2 prophage-derived 76.1 1.2 4.2E-05 31.8 2.0 15 107-121 3-17 (173)
191 1xx6_A Thymidine kinase; NESG, 75.8 4.6 0.00016 30.6 5.3 38 105-147 8-45 (191)
192 2orw_A Thymidine kinase; TMTK, 75.8 4.8 0.00016 30.0 5.3 19 105-123 3-21 (184)
193 1um8_A ATP-dependent CLP prote 75.8 1.4 4.8E-05 36.4 2.5 18 104-121 71-88 (376)
194 3jvv_A Twitching mobility prot 75.7 1.2 4.1E-05 37.4 2.0 20 103-122 121-140 (356)
195 2ehv_A Hypothetical protein PH 75.6 1.6 5.5E-05 33.2 2.6 23 101-123 26-48 (251)
196 1xp8_A RECA protein, recombina 75.6 3.8 0.00013 34.4 5.1 29 102-131 71-99 (366)
197 1ly1_A Polynucleotide kinase; 75.6 1.3 4.4E-05 32.0 2.0 15 107-121 4-18 (181)
198 3cm0_A Adenylate kinase; ATP-b 75.5 0.96 3.3E-05 33.1 1.3 18 104-121 3-20 (186)
199 2r62_A Cell division protease 75.2 0.77 2.6E-05 35.9 0.7 18 105-122 44-61 (268)
200 2v54_A DTMP kinase, thymidylat 74.9 1.6 5.5E-05 32.3 2.4 18 104-121 3-20 (204)
201 2cvh_A DNA repair and recombin 74.9 1.9 6.3E-05 32.2 2.8 22 102-123 17-38 (220)
202 4eun_A Thermoresistant glucoki 74.8 1.6 5.3E-05 32.7 2.3 19 104-122 28-46 (200)
203 1s96_A Guanylate kinase, GMP k 74.6 1.6 5.4E-05 33.9 2.3 22 102-123 13-34 (219)
204 1g8p_A Magnesium-chelatase 38 74.4 1 3.4E-05 36.4 1.2 17 105-121 45-61 (350)
205 1knq_A Gluconate kinase; ALFA/ 74.2 1.3 4.6E-05 32.1 1.8 19 104-122 7-25 (175)
206 2z43_A DNA repair and recombin 74.1 4.2 0.00015 33.0 5.0 20 104-123 106-125 (324)
207 1znw_A Guanylate kinase, GMP k 74.0 1.7 5.7E-05 32.8 2.3 22 101-122 16-37 (207)
208 2cdn_A Adenylate kinase; phosp 73.8 1.8 6.3E-05 32.2 2.5 19 103-121 18-36 (201)
209 1njg_A DNA polymerase III subu 73.7 1.5 5.1E-05 32.5 2.0 16 106-121 46-61 (250)
210 3lnc_A Guanylate kinase, GMP k 73.3 1.4 4.7E-05 33.8 1.7 21 102-122 24-44 (231)
211 1bg2_A Kinesin; motor protein, 73.3 1.4 4.9E-05 36.6 1.9 22 101-122 72-95 (325)
212 3d3q_A TRNA delta(2)-isopenten 73.2 1.3 4.6E-05 37.0 1.7 15 107-121 9-23 (340)
213 4fcw_A Chaperone protein CLPB; 72.9 1.5 5.1E-05 34.8 1.9 17 106-122 48-64 (311)
214 2qt1_A Nicotinamide riboside k 72.8 1.8 6E-05 32.5 2.2 23 99-121 15-37 (207)
215 4akg_A Glutathione S-transfera 72.8 1.9 6.4E-05 45.3 3.0 47 76-123 891-941 (2695)
216 3crm_A TRNA delta(2)-isopenten 72.7 1.4 4.8E-05 36.6 1.7 15 107-121 7-21 (323)
217 2qby_A CDC6 homolog 1, cell di 72.6 1.8 6.2E-05 35.0 2.4 19 104-122 44-62 (386)
218 1sxj_D Activator 1 41 kDa subu 72.2 2 6.9E-05 34.5 2.6 16 106-121 59-74 (353)
219 2rhm_A Putative kinase; P-loop 72.2 1.6 5.4E-05 32.0 1.8 17 105-121 5-21 (193)
220 1tue_A Replication protein E1; 72.0 2.4 8.3E-05 33.2 2.8 24 106-130 59-82 (212)
221 1n0w_A DNA repair protein RAD5 71.4 2.3 7.8E-05 32.3 2.6 23 102-124 21-43 (243)
222 1fnn_A CDC6P, cell division co 71.3 1.9 6.4E-05 35.1 2.2 16 107-122 46-61 (389)
223 3lre_A Kinesin-like protein KI 71.3 1.8 6.2E-05 36.4 2.1 22 101-122 100-123 (355)
224 1sxj_E Activator 1 40 kDa subu 71.3 6.7 0.00023 31.5 5.6 47 62-122 7-53 (354)
225 2qby_B CDC6 homolog 3, cell di 71.2 1.9 6.4E-05 35.2 2.2 18 105-122 45-62 (384)
226 4a14_A Kinesin, kinesin-like p 71.1 1.7 5.8E-05 36.3 1.9 22 101-122 78-101 (344)
227 2z4s_A Chromosomal replication 70.5 12 0.00041 31.8 7.2 18 105-122 130-147 (440)
228 2c95_A Adenylate kinase 1; tra 70.5 2 7E-05 31.4 2.1 19 103-121 7-25 (196)
229 2plr_A DTMP kinase, probable t 70.4 1.9 6.4E-05 31.9 1.9 18 104-121 3-20 (213)
230 3eph_A TRNA isopentenyltransfe 70.4 1.6 5.4E-05 37.6 1.6 14 108-121 5-18 (409)
231 1f9v_A Kinesin-like protein KA 70.3 2.1 7.1E-05 35.9 2.3 25 98-122 76-102 (347)
232 2chq_A Replication factor C sm 70.0 8.2 0.00028 30.2 5.7 44 63-121 11-54 (319)
233 4a74_A DNA repair and recombin 69.9 2.1 7.1E-05 32.2 2.0 23 101-123 21-43 (231)
234 3bfn_A Kinesin-like protein KI 69.8 2 7E-05 36.6 2.1 21 102-122 94-116 (388)
235 3nwj_A ATSK2; P loop, shikimat 69.8 2.3 7.8E-05 33.8 2.3 21 102-122 45-65 (250)
236 3qf7_A RAD50; ABC-ATPase, ATPa 69.7 2 6.8E-05 35.9 2.0 16 107-122 25-40 (365)
237 1tev_A UMP-CMP kinase; ploop, 69.7 1.9 6.4E-05 31.4 1.7 17 105-121 3-19 (196)
238 3t61_A Gluconokinase; PSI-biol 69.6 2.1 7.2E-05 31.9 2.0 17 105-121 18-34 (202)
239 3gbj_A KIF13B protein; kinesin 69.6 1.8 6.2E-05 36.3 1.8 23 100-122 86-110 (354)
240 3t0q_A AGR253WP; kinesin, alph 69.5 2.1 7.3E-05 35.8 2.2 25 98-122 77-103 (349)
241 1gvn_B Zeta; postsegregational 69.3 2.1 7.1E-05 34.5 2.0 18 104-121 32-49 (287)
242 3tqf_A HPR(Ser) kinase; transf 69.2 2.2 7.6E-05 32.7 2.0 18 103-120 14-31 (181)
243 1m7g_A Adenylylsulfate kinase; 69.1 2.2 7.6E-05 32.2 2.0 29 92-121 13-41 (211)
244 2bdt_A BH3686; alpha-beta prot 69.1 2.2 7.7E-05 31.3 2.0 18 105-122 2-19 (189)
245 1cr0_A DNA primase/helicase; R 69.1 2.8 9.5E-05 33.3 2.7 23 101-123 31-53 (296)
246 3f9v_A Minichromosome maintena 69.0 2.8 9.7E-05 37.4 3.0 15 107-121 329-343 (595)
247 2nr8_A Kinesin-like protein KI 68.8 2.2 7.7E-05 35.9 2.2 23 100-122 97-121 (358)
248 3uie_A Adenylyl-sulfate kinase 68.8 2.1 7.2E-05 32.0 1.8 19 103-121 23-41 (200)
249 3kta_A Chromosome segregation 68.5 2.2 7.6E-05 31.1 1.9 16 107-122 28-43 (182)
250 3hu3_A Transitional endoplasmi 68.4 2.5 8.5E-05 36.9 2.4 19 104-122 237-255 (489)
251 3c8u_A Fructokinase; YP_612366 68.4 2.2 7.5E-05 32.2 1.8 19 103-121 20-38 (208)
252 2wwf_A Thymidilate kinase, put 68.2 2.7 9.3E-05 31.2 2.4 19 103-121 8-26 (212)
253 4a1f_A DNAB helicase, replicat 68.0 14 0.00047 30.7 6.8 23 101-123 42-64 (338)
254 1f2t_A RAD50 ABC-ATPase; DNA d 68.0 2.5 8.5E-05 30.5 2.0 14 108-121 26-39 (149)
255 1nks_A Adenylate kinase; therm 68.0 2.1 7E-05 31.2 1.6 15 107-121 3-17 (194)
256 3tif_A Uncharacterized ABC tra 68.0 3.1 0.00011 32.4 2.7 20 102-121 28-47 (235)
257 1nlf_A Regulatory protein REPA 68.0 2.8 9.5E-05 33.1 2.5 24 100-123 25-48 (279)
258 2r2a_A Uncharacterized protein 67.5 3.8 0.00013 31.3 3.1 16 107-122 7-22 (199)
259 3bgw_A DNAB-like replicative h 67.4 6.7 0.00023 33.6 4.9 28 101-128 193-220 (444)
260 2iyv_A Shikimate kinase, SK; t 67.3 3 0.0001 30.4 2.4 16 106-121 3-18 (184)
261 1ak2_A Adenylate kinase isoenz 67.3 2.6 8.9E-05 32.3 2.1 18 104-121 15-32 (233)
262 3nwn_A Kinesin-like protein KI 67.0 1.7 5.9E-05 36.6 1.1 23 100-122 98-122 (359)
263 1zd8_A GTP:AMP phosphotransfer 67.0 2.6 8.9E-05 32.1 2.1 17 105-121 7-23 (227)
264 1aky_A Adenylate kinase; ATP:A 67.0 2.6 8.9E-05 31.9 2.0 17 105-121 4-20 (220)
265 3auy_A DNA double-strand break 66.7 2.4 8.1E-05 35.3 1.9 15 108-122 28-42 (371)
266 2pez_A Bifunctional 3'-phospho 66.6 2.5 8.5E-05 30.8 1.8 18 104-121 4-21 (179)
267 1zak_A Adenylate kinase; ATP:A 66.6 2.7 9.4E-05 31.8 2.1 17 105-121 5-21 (222)
268 1v5w_A DMC1, meiotic recombina 66.6 6.7 0.00023 32.2 4.6 20 104-123 121-140 (343)
269 4etp_A Kinesin-like protein KA 66.4 2 6.9E-05 36.7 1.4 25 98-122 132-158 (403)
270 3fb4_A Adenylate kinase; psych 66.3 2.7 9.2E-05 31.5 2.0 15 107-121 2-16 (216)
271 1nn5_A Similar to deoxythymidy 66.2 3 0.0001 31.0 2.2 19 103-121 7-25 (215)
272 1ye8_A Protein THEP1, hypothet 65.9 3.3 0.00011 30.8 2.4 16 107-122 2-17 (178)
273 2zr9_A Protein RECA, recombina 65.6 8.6 0.00029 31.9 5.1 23 101-123 57-79 (349)
274 1ry6_A Internal kinesin; kines 65.5 2.9 9.9E-05 35.2 2.2 19 104-122 82-102 (360)
275 1v8k_A Kinesin-like protein KI 65.5 2.1 7.1E-05 36.8 1.3 22 101-122 149-172 (410)
276 1goj_A Kinesin, kinesin heavy 65.4 2.2 7.5E-05 35.9 1.4 22 101-122 75-98 (355)
277 2r6a_A DNAB helicase, replicat 65.4 9.6 0.00033 32.5 5.5 24 100-123 198-221 (454)
278 1e6c_A Shikimate kinase; phosp 65.3 3 0.0001 29.9 2.0 16 106-121 3-18 (173)
279 1via_A Shikimate kinase; struc 65.3 3.2 0.00011 30.0 2.2 15 107-121 6-20 (175)
280 3dl0_A Adenylate kinase; phosp 65.2 3 0.0001 31.3 2.1 15 107-121 2-16 (216)
281 4b4t_I 26S protease regulatory 65.1 2.7 9.3E-05 36.5 2.0 53 64-121 177-232 (437)
282 1sxj_A Activator 1 95 kDa subu 65.1 2.9 9.8E-05 36.4 2.1 18 105-122 77-94 (516)
283 1qf9_A UMP/CMP kinase, protein 65.1 2.8 9.7E-05 30.4 1.9 16 106-121 7-22 (194)
284 2y65_A Kinesin, kinesin heavy 65.0 2.1 7.1E-05 36.2 1.2 22 101-122 79-102 (365)
285 3pxg_A Negative regulator of g 65.0 3 0.0001 35.9 2.2 19 104-122 200-218 (468)
286 1u94_A RECA protein, recombina 65.0 9.4 0.00032 31.8 5.3 22 102-123 60-81 (356)
287 3asz_A Uridine kinase; cytidin 64.8 3.1 0.00011 31.1 2.0 18 105-122 6-23 (211)
288 1g41_A Heat shock protein HSLU 64.7 3.4 0.00012 35.8 2.6 18 105-122 50-67 (444)
289 2bwj_A Adenylate kinase 5; pho 64.5 3.1 0.00011 30.5 2.0 17 105-121 12-28 (199)
290 2cbz_A Multidrug resistance-as 64.5 4 0.00014 31.8 2.7 21 102-122 28-48 (237)
291 2vvg_A Kinesin-2; motor protei 64.4 2.2 7.5E-05 35.8 1.2 22 101-122 84-107 (350)
292 1in4_A RUVB, holliday junction 64.4 3.7 0.00013 33.5 2.6 17 106-122 52-68 (334)
293 2yvu_A Probable adenylyl-sulfa 64.3 2.9 9.9E-05 30.6 1.8 18 104-121 12-29 (186)
294 1iqp_A RFCS; clamp loader, ext 64.1 3.4 0.00012 32.6 2.3 15 107-121 48-62 (327)
295 3u06_A Protein claret segregat 63.7 2.3 7.7E-05 36.6 1.2 24 99-122 131-156 (412)
296 3dc4_A Kinesin-like protein NO 63.7 3.1 0.0001 34.8 2.0 22 101-122 89-112 (344)
297 2v9p_A Replication protein E1; 63.7 4.1 0.00014 33.4 2.7 21 102-122 123-143 (305)
298 3b6u_A Kinesin-like protein KI 63.6 2.2 7.5E-05 36.2 1.1 22 101-122 96-119 (372)
299 2pcj_A ABC transporter, lipopr 63.6 3.1 0.0001 32.2 1.9 19 103-121 28-46 (224)
300 3pvs_A Replication-associated 63.5 3.1 0.00011 35.8 2.1 17 106-122 51-67 (447)
301 1ukz_A Uridylate kinase; trans 63.0 3.4 0.00012 30.6 2.0 16 106-121 16-31 (203)
302 2if2_A Dephospho-COA kinase; a 63.0 3.2 0.00011 30.8 1.8 15 107-121 3-17 (204)
303 2rep_A Kinesin-like protein KI 62.9 3 0.0001 35.3 1.8 25 98-122 107-133 (376)
304 3u61_B DNA polymerase accessor 62.8 7.3 0.00025 31.1 4.1 16 107-122 50-65 (324)
305 3m6a_A ATP-dependent protease 62.8 3.5 0.00012 36.3 2.3 19 104-122 107-125 (543)
306 2jaq_A Deoxyguanosine kinase; 62.7 3.1 0.00011 30.5 1.7 15 107-121 2-16 (205)
307 2i3b_A HCR-ntpase, human cance 62.6 4.7 0.00016 30.4 2.7 19 105-123 1-19 (189)
308 3k1j_A LON protease, ATP-depen 62.5 3.2 0.00011 36.9 2.0 21 102-122 57-77 (604)
309 2h58_A Kinesin-like protein KI 62.4 3.4 0.00011 34.4 2.0 24 99-122 73-98 (330)
310 2pt5_A Shikimate kinase, SK; a 62.3 3.7 0.00013 29.3 2.0 15 107-121 2-16 (168)
311 1zuh_A Shikimate kinase; alpha 62.2 3.7 0.00013 29.4 2.0 16 106-121 8-23 (168)
312 2ghi_A Transport protein; mult 62.2 4.6 0.00016 32.0 2.7 21 102-122 43-63 (260)
313 1knx_A Probable HPR(Ser) kinas 62.1 3.5 0.00012 34.1 2.0 21 103-123 145-166 (312)
314 1cke_A CK, MSSA, protein (cyti 62.0 4.2 0.00014 30.6 2.4 17 105-121 5-21 (227)
315 3a4m_A L-seryl-tRNA(SEC) kinas 61.9 3 0.0001 32.8 1.5 17 105-121 4-20 (260)
316 2pze_A Cystic fibrosis transme 61.7 4.7 0.00016 31.2 2.6 20 103-122 32-51 (229)
317 1sgw_A Putative ABC transporte 61.7 5.1 0.00017 30.9 2.8 21 102-122 32-52 (214)
318 2vli_A Antibiotic resistance p 61.7 3.1 0.00011 30.1 1.5 17 105-121 5-21 (183)
319 2ff7_A Alpha-hemolysin translo 61.7 4.7 0.00016 31.7 2.6 20 103-122 33-52 (247)
320 2ce7_A Cell division protein F 61.7 3.4 0.00012 36.0 2.0 17 106-122 50-66 (476)
321 2h17_A ADP-ribosylation factor 61.7 2.6 8.8E-05 30.5 1.1 22 100-121 16-37 (181)
322 2eyq_A TRCF, transcription-rep 61.7 7.2 0.00025 37.6 4.4 53 102-162 14-66 (1151)
323 2bbw_A Adenylate kinase 4, AK4 61.5 3.8 0.00013 31.6 2.1 17 105-121 27-43 (246)
324 1jjv_A Dephospho-COA kinase; P 61.4 3.8 0.00013 30.5 2.0 15 107-121 4-18 (206)
325 2pbr_A DTMP kinase, thymidylat 61.2 3.9 0.00013 29.7 2.0 14 108-121 3-16 (195)
326 3cob_A Kinesin heavy chain-lik 61.0 3.5 0.00012 34.9 1.8 24 99-122 72-97 (369)
327 2zfi_A Kinesin-like protein KI 60.9 3.7 0.00013 34.6 2.0 22 101-122 84-107 (366)
328 3pxi_A Negative regulator of g 60.8 3.8 0.00013 37.3 2.2 19 104-122 200-218 (758)
329 1g6h_A High-affinity branched- 60.7 4.3 0.00015 32.0 2.3 21 102-122 30-50 (257)
330 3be4_A Adenylate kinase; malar 60.6 3.6 0.00012 31.1 1.8 17 105-121 5-21 (217)
331 1x88_A Kinesin-like protein KI 60.6 3.6 0.00012 34.6 1.8 23 100-122 82-106 (359)
332 3lda_A DNA repair protein RAD5 60.5 7.6 0.00026 33.0 3.9 19 105-123 178-196 (400)
333 1ypw_A Transitional endoplasmi 60.3 3.7 0.00013 38.0 2.1 19 103-121 236-254 (806)
334 1mv5_A LMRA, multidrug resista 60.0 4.4 0.00015 31.6 2.2 21 102-122 25-45 (243)
335 3qks_A DNA double-strand break 60.0 4.2 0.00014 30.8 2.0 16 107-122 25-40 (203)
336 1t5c_A CENP-E protein, centrom 59.9 3.8 0.00013 34.3 1.9 22 101-122 72-95 (349)
337 2wbe_C Bipolar kinesin KRP-130 59.8 3.9 0.00013 34.5 2.0 22 101-122 95-118 (373)
338 4g1u_C Hemin import ATP-bindin 59.5 5.3 0.00018 31.8 2.6 19 103-121 35-53 (266)
339 1rz3_A Hypothetical protein rb 59.4 4.1 0.00014 30.5 1.9 19 104-122 21-39 (201)
340 3gfo_A Cobalt import ATP-bindi 59.2 5.3 0.00018 32.1 2.6 20 103-122 32-51 (275)
341 1uf9_A TT1252 protein; P-loop, 59.1 4.2 0.00014 29.9 1.8 15 107-121 10-24 (203)
342 2yz2_A Putative ABC transporte 59.0 5.7 0.00019 31.5 2.7 20 103-122 31-50 (266)
343 1ji0_A ABC transporter; ATP bi 58.9 5.6 0.00019 31.0 2.6 20 103-122 30-49 (240)
344 2heh_A KIF2C protein; kinesin, 58.9 4.1 0.00014 34.7 2.0 22 101-122 129-152 (387)
345 2z0h_A DTMP kinase, thymidylat 58.9 4.5 0.00015 29.5 2.0 14 108-121 3-16 (197)
346 2d2e_A SUFC protein; ABC-ATPas 58.8 5.6 0.00019 31.2 2.6 21 102-122 26-46 (250)
347 2p5t_B PEZT; postsegregational 58.7 3.4 0.00012 32.2 1.3 19 103-121 30-48 (253)
348 1htw_A HI0065; nucleotide-bind 58.6 4 0.00014 29.9 1.7 19 103-121 31-49 (158)
349 1sxj_C Activator 1 40 kDa subu 58.5 5.2 0.00018 32.4 2.5 16 107-122 48-63 (340)
350 1r6b_X CLPA protein; AAA+, N-t 58.3 4.6 0.00016 36.7 2.3 19 104-122 206-224 (758)
351 1b0u_A Histidine permease; ABC 58.3 6 0.0002 31.3 2.7 20 103-122 30-49 (262)
352 3cf2_A TER ATPase, transitiona 58.3 5.5 0.00019 37.1 2.8 55 65-122 473-528 (806)
353 1np6_A Molybdopterin-guanine d 58.2 4.2 0.00014 30.4 1.7 15 107-121 8-22 (174)
354 2ixe_A Antigen peptide transpo 58.1 6 0.0002 31.5 2.7 21 102-122 42-62 (271)
355 2zu0_C Probable ATP-dependent 58.1 6 0.00021 31.4 2.7 20 103-122 44-63 (267)
356 4h1g_A Maltose binding protein 58.0 4.1 0.00014 37.1 1.9 25 98-122 454-480 (715)
357 1sxj_B Activator 1 37 kDa subu 58.0 5.5 0.00019 31.3 2.5 15 107-121 44-58 (323)
358 1xjc_A MOBB protein homolog; s 58.0 4.3 0.00015 30.4 1.7 14 108-121 7-20 (169)
359 2px0_A Flagellar biosynthesis 57.8 5.1 0.00017 32.4 2.3 20 104-123 104-123 (296)
360 2qi9_C Vitamin B12 import ATP- 57.7 6 0.0002 31.2 2.6 21 102-122 23-43 (249)
361 4akg_A Glutathione S-transfera 57.7 3.3 0.00011 43.5 1.3 20 102-121 1264-1283(2695)
362 1e4v_A Adenylate kinase; trans 57.6 4.7 0.00016 30.3 1.9 15 107-121 2-16 (214)
363 4e22_A Cytidylate kinase; P-lo 57.4 6.1 0.00021 30.8 2.6 19 104-122 26-44 (252)
364 3qkt_A DNA double-strand break 57.2 4.7 0.00016 33.0 2.0 16 108-123 26-41 (339)
365 1jr3_A DNA polymerase III subu 57.2 4.7 0.00016 32.6 2.0 15 107-121 40-54 (373)
366 1vht_A Dephospho-COA kinase; s 57.0 4.9 0.00017 30.2 2.0 16 106-121 5-20 (218)
367 3tlx_A Adenylate kinase 2; str 57.0 4.6 0.00016 31.3 1.9 18 104-121 28-45 (243)
368 1vpl_A ABC transporter, ATP-bi 57.0 6.5 0.00022 31.1 2.7 20 103-122 39-58 (256)
369 1rj9_A FTSY, signal recognitio 56.8 6.1 0.00021 32.1 2.6 19 104-122 101-119 (304)
370 2nq2_C Hypothetical ABC transp 56.7 6.3 0.00022 31.1 2.6 20 103-122 29-48 (253)
371 3nh6_A ATP-binding cassette SU 56.7 4.8 0.00016 33.0 1.9 20 103-122 78-97 (306)
372 2owm_A Nckin3-434, related to 56.6 4.7 0.00016 34.9 2.0 22 101-122 131-154 (443)
373 1tf7_A KAIC; homohexamer, hexa 56.6 8.5 0.00029 33.5 3.7 32 101-132 35-66 (525)
374 3bs4_A Uncharacterized protein 56.0 16 0.00055 29.1 5.0 25 103-128 19-43 (260)
375 2olj_A Amino acid ABC transpor 55.8 6.9 0.00024 31.1 2.7 20 103-122 48-67 (263)
376 2ihy_A ABC transporter, ATP-bi 55.3 6.8 0.00023 31.4 2.6 20 103-122 45-64 (279)
377 1odf_A YGR205W, hypothetical 3 55.0 4.9 0.00017 32.5 1.7 16 106-121 32-47 (290)
378 1ltq_A Polynucleotide kinase; 54.9 5.4 0.00019 31.5 2.0 15 107-121 4-18 (301)
379 2xb4_A Adenylate kinase; ATP-b 54.9 5 0.00017 30.5 1.7 15 107-121 2-16 (223)
380 1gtv_A TMK, thymidylate kinase 54.9 2.6 8.7E-05 31.4 0.0 14 108-121 3-16 (214)
381 2dhr_A FTSH; AAA+ protein, hex 54.4 5.4 0.00018 35.0 2.0 17 106-122 65-81 (499)
382 3b9q_A Chloroplast SRP recepto 54.3 6.3 0.00022 32.0 2.3 21 103-123 98-118 (302)
383 2f1r_A Molybdopterin-guanine d 54.1 3.5 0.00012 30.6 0.7 16 107-122 4-19 (171)
384 1svm_A Large T antigen; AAA+ f 54.1 6.2 0.00021 33.3 2.3 20 102-121 166-185 (377)
385 3pxi_A Negative regulator of g 54.0 5.2 0.00018 36.5 1.9 16 107-122 523-538 (758)
386 1w4r_A Thymidine kinase; type 53.6 21 0.00071 27.3 5.0 38 105-147 20-57 (195)
387 3vkg_A Dynein heavy chain, cyt 53.6 4.3 0.00015 43.4 1.4 19 102-120 1301-1319(3245)
388 2jeo_A Uridine-cytidine kinase 53.5 5.7 0.0002 30.6 1.8 19 104-122 24-42 (245)
389 1ko7_A HPR kinase/phosphatase; 53.4 5.9 0.0002 32.7 2.0 20 104-123 143-163 (314)
390 1pui_A ENGB, probable GTP-bind 53.1 5.9 0.0002 29.1 1.8 19 103-121 24-42 (210)
391 1uj2_A Uridine-cytidine kinase 53.0 6.2 0.00021 30.6 2.0 15 107-121 24-38 (252)
392 2bbs_A Cystic fibrosis transme 52.8 7.8 0.00027 31.3 2.6 20 103-122 62-81 (290)
393 1a5t_A Delta prime, HOLB; zinc 52.7 5.2 0.00018 32.5 1.6 16 107-122 26-41 (334)
394 1r6b_X CLPA protein; AAA+, N-t 52.5 5.7 0.00019 36.1 1.9 16 107-122 490-505 (758)
395 2j9r_A Thymidine kinase; TK1, 52.2 23 0.00079 27.5 5.1 40 105-149 28-67 (214)
396 2i1q_A DNA repair and recombin 51.8 8.4 0.00029 31.0 2.7 20 104-123 97-116 (322)
397 2grj_A Dephospho-COA kinase; T 51.8 6.8 0.00023 29.5 2.0 15 107-121 14-28 (192)
398 3ake_A Cytidylate kinase; CMP 51.8 6.9 0.00023 28.8 2.0 15 107-121 4-18 (208)
399 2pjz_A Hypothetical protein ST 51.7 8.2 0.00028 30.7 2.6 18 105-122 30-47 (263)
400 1zd9_A ADP-ribosylation factor 51.6 5.5 0.00019 28.9 1.4 32 90-121 6-38 (188)
401 2dyk_A GTP-binding protein; GT 51.5 6.5 0.00022 27.2 1.7 15 107-121 3-17 (161)
402 3sr0_A Adenylate kinase; phosp 51.3 6.6 0.00023 30.0 1.9 14 107-120 2-15 (206)
403 2vp4_A Deoxynucleoside kinase; 51.3 5.8 0.0002 30.3 1.5 19 103-121 18-36 (230)
404 1z06_A RAS-related protein RAB 51.0 4.9 0.00017 29.1 1.0 16 106-121 21-36 (189)
405 2h57_A ADP-ribosylation factor 50.8 5.2 0.00018 29.0 1.1 16 106-121 22-37 (190)
406 2h92_A Cytidylate kinase; ross 50.7 8.4 0.00029 28.7 2.4 17 105-121 3-19 (219)
407 1q57_A DNA primase/helicase; d 50.6 23 0.00079 30.4 5.4 22 101-122 238-259 (503)
408 3hr8_A Protein RECA; alpha and 50.6 18 0.00063 30.1 4.6 28 102-130 58-85 (356)
409 2ce2_X GTPase HRAS; signaling 50.3 6.6 0.00022 27.1 1.6 15 107-121 5-19 (166)
410 2f6r_A COA synthase, bifunctio 50.0 6.9 0.00024 31.1 1.8 15 107-121 77-91 (281)
411 1z2a_A RAS-related protein RAB 49.9 7.1 0.00024 27.1 1.7 15 107-121 7-21 (168)
412 1q3t_A Cytidylate kinase; nucl 49.5 10 0.00035 28.9 2.7 19 104-122 15-33 (236)
413 3cmu_A Protein RECA, recombina 49.4 17 0.00058 37.4 4.8 27 102-128 1424-1450(2050)
414 1w5s_A Origin recognition comp 49.4 5.3 0.00018 32.7 1.1 18 105-122 50-69 (412)
415 2qen_A Walker-type ATPase; unk 49.3 7.2 0.00025 30.9 1.9 17 105-121 31-47 (350)
416 1qvr_A CLPB protein; coiled co 49.3 6.2 0.00021 36.5 1.7 16 107-122 590-605 (854)
417 4eaq_A DTMP kinase, thymidylat 49.2 6.7 0.00023 30.2 1.6 19 103-121 24-42 (229)
418 3io5_A Recombination and repai 49.2 22 0.00075 29.6 4.8 19 104-123 28-46 (333)
419 4a82_A Cystic fibrosis transme 49.1 7.5 0.00026 34.3 2.1 20 102-121 364-383 (578)
420 3aez_A Pantothenate kinase; tr 49.1 7.1 0.00024 31.8 1.8 21 102-122 87-107 (312)
421 3cf2_A TER ATPase, transitiona 48.7 7.1 0.00024 36.4 1.9 18 105-122 238-255 (806)
422 3umf_A Adenylate kinase; rossm 48.4 7.8 0.00027 30.0 1.9 19 102-120 26-44 (217)
423 3con_A GTPase NRAS; structural 48.3 5.2 0.00018 28.8 0.8 16 106-121 22-37 (190)
424 3sop_A Neuronal-specific septi 48.2 7.5 0.00026 30.9 1.8 15 107-121 4-18 (270)
425 1ek0_A Protein (GTP-binding pr 48.0 7.6 0.00026 27.0 1.6 15 107-121 5-19 (170)
426 2vhj_A Ntpase P4, P4; non- hyd 48.0 7 0.00024 32.6 1.6 20 102-121 120-139 (331)
427 1nij_A Hypothetical protein YJ 48.0 7.4 0.00025 31.5 1.8 15 108-122 7-21 (318)
428 2r8r_A Sensor protein; KDPD, P 47.9 27 0.00092 27.4 4.9 20 107-126 8-27 (228)
429 1ky3_A GTP-binding protein YPT 47.8 7.9 0.00027 27.3 1.7 15 107-121 10-24 (182)
430 1a7j_A Phosphoribulokinase; tr 47.7 5.9 0.0002 31.9 1.1 15 107-121 7-21 (290)
431 1z0j_A RAB-22, RAS-related pro 47.6 7.7 0.00026 27.0 1.6 15 107-121 8-22 (170)
432 2og2_A Putative signal recogni 47.2 9.2 0.00031 32.0 2.2 20 104-123 156-175 (359)
433 2ged_A SR-beta, signal recogni 47.1 9.2 0.00031 27.5 2.0 17 105-121 48-64 (193)
434 1u8z_A RAS-related protein RAL 47.0 8.1 0.00028 26.7 1.6 15 107-121 6-20 (168)
435 3tqc_A Pantothenate kinase; bi 46.6 7.9 0.00027 31.9 1.7 16 107-122 94-109 (321)
436 1e69_A Chromosome segregation 46.6 8.1 0.00028 31.2 1.8 15 107-121 26-40 (322)
437 1nrj_B SR-beta, signal recogni 46.4 9.4 0.00032 28.2 2.0 16 106-121 13-28 (218)
438 2fna_A Conserved hypothetical 46.4 7.7 0.00026 30.8 1.6 16 106-121 31-46 (357)
439 1qvr_A CLPB protein; coiled co 46.4 8.1 0.00028 35.8 1.9 17 105-121 191-207 (854)
440 1c9k_A COBU, adenosylcobinamid 46.4 8 0.00027 29.2 1.6 14 108-121 2-15 (180)
441 1lkx_A Myosin IE heavy chain; 46.3 13 0.00044 34.1 3.2 38 93-130 79-121 (697)
442 1g16_A RAS-related protein SEC 46.3 8.2 0.00028 26.9 1.6 15 107-121 5-19 (170)
443 1kao_A RAP2A; GTP-binding prot 46.3 8.7 0.0003 26.5 1.7 15 107-121 5-19 (167)
444 3gd7_A Fusion complex of cysti 46.0 11 0.00038 31.9 2.6 21 102-122 44-64 (390)
445 2onk_A Molybdate/tungstate ABC 45.8 11 0.00037 29.4 2.4 17 106-122 25-41 (240)
446 3kl4_A SRP54, signal recogniti 45.4 37 0.0013 29.1 5.9 19 105-123 97-115 (433)
447 1c1y_A RAS-related protein RAP 45.4 9.2 0.00031 26.5 1.7 15 107-121 5-19 (167)
448 1vma_A Cell division protein F 45.3 8.8 0.0003 31.3 1.8 19 104-122 103-121 (306)
449 2erx_A GTP-binding protein DI- 45.2 9.2 0.00032 26.6 1.7 15 107-121 5-19 (172)
450 1wms_A RAB-9, RAB9, RAS-relate 45.0 9 0.00031 27.0 1.6 15 107-121 9-23 (177)
451 3fvq_A Fe(3+) IONS import ATP- 44.7 12 0.00041 31.3 2.6 19 103-121 28-46 (359)
452 2f9l_A RAB11B, member RAS onco 44.7 10 0.00036 27.7 2.0 15 107-121 7-21 (199)
453 1pzn_A RAD51, DNA repair and r 44.6 9.8 0.00034 31.4 2.0 20 104-123 130-149 (349)
454 1sq5_A Pantothenate kinase; P- 44.4 10 0.00035 30.5 2.0 19 104-122 79-97 (308)
455 3pqc_A Probable GTP-binding pr 44.2 9 0.00031 27.4 1.6 16 106-121 24-39 (195)
456 3e70_C DPA, signal recognition 44.1 9.3 0.00032 31.4 1.8 20 103-122 127-146 (328)
457 3zvl_A Bifunctional polynucleo 44.1 9.8 0.00034 32.1 2.0 16 106-121 259-274 (416)
458 3qf4_A ABC transporter, ATP-bi 44.1 10 0.00034 33.7 2.1 21 102-122 366-386 (587)
459 4edh_A DTMP kinase, thymidylat 44.0 8.8 0.0003 29.4 1.5 20 103-122 4-23 (213)
460 3dm5_A SRP54, signal recogniti 43.8 32 0.0011 29.7 5.2 19 105-123 100-118 (443)
461 3cmu_A Protein RECA, recombina 43.6 23 0.00078 36.5 4.7 29 102-130 1078-1106(2050)
462 3r20_A Cytidylate kinase; stru 43.6 11 0.00036 29.6 2.0 17 105-121 9-25 (233)
463 3b60_A Lipid A export ATP-bind 43.5 12 0.00042 32.9 2.6 21 102-122 366-386 (582)
464 2yyz_A Sugar ABC transporter, 43.4 14 0.00047 30.9 2.7 20 103-122 27-46 (359)
465 3qf4_B Uncharacterized ABC tra 43.1 13 0.00044 33.0 2.6 21 102-122 378-398 (598)
466 2it1_A 362AA long hypothetical 43.0 14 0.00048 30.9 2.7 20 103-122 27-46 (362)
467 3b5x_A Lipid A export ATP-bind 43.0 13 0.00044 32.8 2.6 21 102-122 366-386 (582)
468 1z47_A CYSA, putative ABC-tran 43.0 14 0.00046 30.9 2.6 20 103-122 39-58 (355)
469 3tw8_B RAS-related protein RAB 43.0 10 0.00036 26.6 1.7 15 107-121 11-25 (181)
470 1ypw_A Transitional endoplasmi 42.9 7 0.00024 36.2 0.9 19 103-121 509-527 (806)
471 1z08_A RAS-related protein RAB 42.9 10 0.00036 26.3 1.7 15 107-121 8-22 (170)
472 1r2q_A RAS-related protein RAB 42.8 11 0.00036 26.2 1.7 15 107-121 8-22 (170)
473 2npi_A Protein CLP1; CLP1-PCF1 42.8 14 0.00049 31.8 2.9 19 103-121 136-154 (460)
474 3cmw_A Protein RECA, recombina 42.8 26 0.00089 35.4 5.0 29 102-130 31-59 (1706)
475 1kk8_A Myosin heavy chain, str 42.6 16 0.00055 34.2 3.3 25 106-130 170-196 (837)
476 1svi_A GTP-binding protein YSX 42.5 11 0.00038 27.0 1.9 17 105-121 23-39 (195)
477 3q85_A GTP-binding protein REM 42.3 11 0.00037 26.3 1.7 15 107-121 4-18 (169)
478 2zpa_A Uncharacterized protein 42.3 16 0.00055 33.3 3.2 59 90-156 175-235 (671)
479 2y8e_A RAB-protein 6, GH09086P 42.1 10 0.00036 26.5 1.6 16 106-121 15-30 (179)
480 1w7j_A Myosin VA; motor protei 42.1 16 0.00055 33.9 3.2 26 105-130 156-183 (795)
481 2wsm_A Hydrogenase expression/ 42.1 11 0.00039 27.9 1.9 16 106-121 31-46 (221)
482 1g29_1 MALK, maltose transport 42.0 14 0.00049 30.9 2.6 20 103-122 27-46 (372)
483 2fn4_A P23, RAS-related protei 42.0 10 0.00036 26.6 1.6 16 106-121 10-25 (181)
484 4tmk_A Protein (thymidylate ki 41.9 11 0.00039 28.8 1.9 19 104-122 2-20 (213)
485 2nzj_A GTP-binding protein REM 41.8 11 0.00038 26.3 1.7 15 107-121 6-20 (175)
486 1oix_A RAS-related protein RAB 41.8 12 0.0004 27.4 1.9 16 107-122 31-46 (191)
487 2yhs_A FTSY, cell division pro 41.7 12 0.00042 32.9 2.2 19 105-123 293-311 (503)
488 1upt_A ARL1, ADP-ribosylation 41.7 11 0.00039 26.2 1.7 16 106-121 8-23 (171)
489 3v9p_A DTMP kinase, thymidylat 41.7 10 0.00036 29.4 1.6 20 102-121 22-41 (227)
490 1v43_A Sugar-binding transport 41.4 15 0.00052 30.8 2.7 19 103-121 35-53 (372)
491 4db1_A Myosin-7; S1DC, cardiac 41.3 17 0.00058 33.8 3.2 24 105-128 171-196 (783)
492 2ycu_A Non muscle myosin 2C, a 41.3 17 0.00058 34.6 3.3 27 105-131 146-174 (995)
493 1r8s_A ADP-ribosylation factor 41.2 12 0.0004 26.0 1.7 15 107-121 2-16 (164)
494 2yl4_A ATP-binding cassette SU 41.2 14 0.00047 32.7 2.5 21 102-122 367-387 (595)
495 3rlf_A Maltose/maltodextrin im 41.2 15 0.00053 31.0 2.7 19 103-121 27-45 (381)
496 2ocp_A DGK, deoxyguanosine kin 41.0 9.8 0.00034 29.1 1.4 17 105-121 2-18 (241)
497 1w1w_A Structural maintenance 41.0 13 0.00043 31.3 2.2 18 104-121 25-42 (430)
498 1z0f_A RAB14, member RAS oncog 40.9 12 0.0004 26.3 1.7 16 106-121 16-31 (179)
499 1g8x_A Myosin II heavy chain f 40.9 17 0.00057 34.7 3.2 27 105-131 172-200 (1010)
500 2wji_A Ferrous iron transport 40.8 13 0.00046 26.2 2.0 15 107-121 5-19 (165)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=191.24 Aligned_cols=111 Identities=22% Similarity=0.274 Sum_probs=99.7
Q ss_pred cccCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCchhhHhHHHHHH
Q psy12984 51 VQLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVE 128 (178)
Q Consensus 51 ~~~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g--~dvi~~a~TGsGKTlaf~lp~l~ 128 (178)
+...+.+.+.+..+..+|++++ |++.++++|..+||..||++|..+||.++.| +|++++|+||||||++|++|+++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~ 154 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeccCCCCCCcCCcCCHhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 3445667777888889999998 9999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 129 LIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 129 ~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
++... ...++++||+|||+||.|++.++..+++++
T Consensus 155 ~l~~~--~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 155 QVEPA--NKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp HCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred hhhcc--CCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 88653 345589999999999999999999988765
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=9.7e-24 Score=183.39 Aligned_cols=121 Identities=27% Similarity=0.363 Sum_probs=103.5
Q ss_pred cccccccccccCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 43 EDQTNAVEVQLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
.+..+..++...+.+.+.++. +|++++ |++.++++|.++||..|||+|..|||.++.|+|++++|+||||||++|
T Consensus 36 ~~~~~~~~~~~~~~~~p~~~~---~f~~~~--l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 36 FSKYNNIPVKVTGSDVPQPIQ---HFTSAD--LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp GGGGGGSCEEEESSSCCCCCC---CGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred hhhhcCceeEecCCCCCCCcC---ChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 344455566777777776654 599998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC---CCCCceEEEeecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 123 LVPAVELIYNLKF---MPRNGKSWQGKLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 123 ~lp~l~~l~~~~~---~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
++|+++++..... .....++|++|||+||.|+++++..++...+..
T Consensus 111 ~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 159 (434)
T 2db3_A 111 LLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLK 159 (434)
T ss_dssp HHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcE
Confidence 9999999976432 235689999999999999999999988765443
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.90 E-value=1.3e-23 Score=168.98 Aligned_cols=118 Identities=31% Similarity=0.395 Sum_probs=100.4
Q ss_pred ccccccccCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHH
Q psy12984 46 TNAVEVQLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 125 (178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp 125 (178)
.....+...+.+.+.++.+ |++++ |++.++++|.++||..|+++|..+||.++.|+|++++||||||||++|++|
T Consensus 12 ~~~~~i~~~~~~~p~~~~~---f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~ 86 (242)
T 3fe2_A 12 RRSKEITVRGHNCPKPVLN---FYEAN--FPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP 86 (242)
T ss_dssp HHHHTEEEESSCCCCCCSS---TTTTT--CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH
T ss_pred HhcCceEEeCCCCCCccCC---HhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH
Confidence 3445555566666665544 88887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC---CCCCceEEEeecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 126 AVELIYNLKF---MPRNGKSWQGKLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 126 ~l~~l~~~~~---~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
++.++..... ..+..++|++|||+||.|+++.+..++...+..
T Consensus 87 ~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 132 (242)
T 3fe2_A 87 AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLK 132 (242)
T ss_dssp HHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCce
Confidence 9999875321 345678999999999999999999998876543
No 4
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=164.74 Aligned_cols=115 Identities=30% Similarity=0.394 Sum_probs=95.8
Q ss_pred cccccCCCCCCcCCCCccchHhhc--ccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHH
Q psy12984 49 VEVQLPGSDVALEILSSTQFEALK--GKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPA 126 (178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~f~~l~--~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~ 126 (178)
..+...+.+.+.++.+ |+++. ..|++.++++|.++||..|+++|..+|+.++.|+|++++||||||||++|++|+
T Consensus 11 ~~i~~~~~~~p~~~~~---f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~ 87 (245)
T 3dkp_A 11 HKIHVQGTDLPDPIAT---FQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPI 87 (245)
T ss_dssp TTEEEESSSCCCCCSS---HHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred CceEecCCCCCCcccC---HHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHH
Confidence 3444556666666665 66551 139999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhcCC
Q psy12984 127 VELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 127 l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
+.++.... ..+.+++|++|||+||.|+++.+..++...+.
T Consensus 88 l~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (245)
T 3dkp_A 88 LMQLKQPA-NKGFRALIISPTRELASQIHRELIKISEGTGF 127 (245)
T ss_dssp HHHHCSCC-SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhcc-cCCceEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 99886422 34558999999999999999999998776554
No 5
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.88 E-value=9e-23 Score=161.34 Aligned_cols=104 Identities=32% Similarity=0.416 Sum_probs=91.5
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |++.++++|.++||..|+++|.++|+.++.|+|++++++||||||++|++|+++.+... ....+++|++
T Consensus 4 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~ 79 (219)
T 1q0u_A 4 TQFTRFP--FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITA 79 (219)
T ss_dssp CCGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred CCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEc
Confidence 5699998 99999999999999999999999999999999999999999999999999999987642 2355899999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCCCCcceE
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQPPTVIKV 173 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~~~~~~v 173 (178)
|||+|+.|+++.+..+....+...++++
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 107 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVA 107 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCE
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEE
Confidence 9999999999999999887644333433
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=178.56 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=96.4
Q ss_pred cCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 53 LPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 53 ~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g--~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
..+.+++.+..+..+|++++ |++.++++|.++||..|||+|..+||.++.| +|+|++|+||||||++|++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 79 VLQRDPNSPLYSVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EECSSTTSCCCCCCCSGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ecCCCCCCCccCcCCHHHcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34556666777788999998 9999999999999999999999999999987 9999999999999999999999877
Q ss_pred HhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 131 YNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 131 ~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
... ....+++||+|||+||.|++.++..+.++.
T Consensus 157 ~~~--~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 157 EPA--NKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp CTT--SCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred hhc--CCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 543 234489999999999999999999988764
No 7
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.87 E-value=7.1e-23 Score=165.20 Aligned_cols=117 Identities=26% Similarity=0.324 Sum_probs=96.6
Q ss_pred cccccccCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHH
Q psy12984 47 NAVEVQLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPA 126 (178)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~ 126 (178)
+...+...+.+.+. .....+|++++ |++.++++|..+||..|+++|..+|+.++.|+|++++++||||||++|++|+
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 5 DSIPVSVTGPDYSA-TNVIENFDELK--LDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp CCCCCCEECCSSSC-CSCCCSSGGGS--CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred hhCceeeeCCCCCC-CCccCCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHH
Confidence 33444445555543 12335699998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-------CCCCCceEEEeecHHHHHHHHHHHHHHhhhcC
Q psy12984 127 VELIYNLK-------FMPRNGKSWQGKLRPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 127 l~~l~~~~-------~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~ 166 (178)
++++.... ...+.+++|++|||+||.|++..+..++...+
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (253)
T 1wrb_A 82 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP 128 (253)
T ss_dssp HHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCC
Confidence 99987532 12345899999999999999999999876544
No 8
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=164.47 Aligned_cols=107 Identities=50% Similarity=0.676 Sum_probs=89.3
Q ss_pred CCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccC--CCCC
Q psy12984 62 ILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRN 139 (178)
Q Consensus 62 ~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~--~~~~ 139 (178)
.....+|++|+..|++.++++|.++||..|+++|..+|+.++.|+|++++|+||||||++|++|+++.+...+. ..+.
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 127 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT 127 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred ccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc
Confidence 34456788887679999999999999999999999999999999999999999999999999999999876332 2355
Q ss_pred ceEEEeecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 140 GKSWQGKLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 140 ~~~~l~Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
+++|++|||+||.|++..+..++...+..
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 156 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHT 156 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCce
Confidence 78999999999999999999988765543
No 9
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=156.13 Aligned_cols=95 Identities=28% Similarity=0.349 Sum_probs=83.8
Q ss_pred cchHh-hcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhcc----CCCCCc
Q psy12984 66 TQFEA-LKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK----FMPRNG 140 (178)
Q Consensus 66 ~~f~~-l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~----~~~~~~ 140 (178)
.+|.+ ++ +++.++++|.++||..|+++|..+|+.++.|+|++++||||||||++|++|++..+.... ...+.+
T Consensus 19 ~~f~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 19 CRFKDAFQ--QYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CSHHHHHT--TCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhHhhhhc--cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 45888 66 999999999999999999999999999999999999999999999999999999886421 134568
Q ss_pred eEEEeecHHHHHHHHHHHHHHh
Q psy12984 141 KSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 141 ~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
++|++|||+||.|+++.+..+.
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999875
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=158.11 Aligned_cols=101 Identities=38% Similarity=0.534 Sum_probs=90.0
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccC--CCCCceE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRNGKS 142 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~--~~~~~~~ 142 (178)
..+|++++ |++.++++|.++||..|+++|..+|+.++.|+|++++++||||||++|++|+++.+..... ..+.+++
T Consensus 24 ~~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 24 ITRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp CSBGGGSC--CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 45699998 9999999999999999999999999999999999999999999999999999999875321 2356889
Q ss_pred EEeecHHHHHHHHHHHHHHhhhcCC
Q psy12984 143 WQGKLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 143 ~l~Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
|++|||+||.|++..+..++...+.
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 9999999999999999988765443
No 11
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=160.46 Aligned_cols=100 Identities=31% Similarity=0.342 Sum_probs=90.7
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
..+|++++ |++.++++|..+||..|+++|.++|+.++.|+|++++|+||||||++|++|++..+... ..+.+++|+
T Consensus 42 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--~~~~~~lil 117 (249)
T 3ber_A 42 TKTFKDLG--VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--PQRLFALVL 117 (249)
T ss_dssp HCCTGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CCSSCEEEE
T ss_pred cCCHHHcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--CCCceEEEE
Confidence 45699998 99999999999999999999999999999999999999999999999999999988764 234579999
Q ss_pred eecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 145 GKLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
+|||+||.|+++.+..++..++..
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~ 141 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQ 141 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred eCCHHHHHHHHHHHHHHhccCCee
Confidence 999999999999999998776543
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=4.9e-22 Score=154.90 Aligned_cols=96 Identities=30% Similarity=0.376 Sum_probs=87.7
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |+++++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+... ....+++|++
T Consensus 3 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~ 78 (206)
T 1vec_A 3 NEFEDYC--LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIV 78 (206)
T ss_dssp SSGGGSC--CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEe
Confidence 4699998 99999999999999999999999999999999999999999999999999999987542 3445899999
Q ss_pred ecHHHHHHHHHHHHHHhhhc
Q psy12984 146 KLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~ 165 (178)
|||+|+.|++..+..+.+.+
T Consensus 79 Pt~~L~~q~~~~~~~~~~~~ 98 (206)
T 1vec_A 79 PTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988765
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=168.12 Aligned_cols=109 Identities=28% Similarity=0.335 Sum_probs=93.4
Q ss_pred cCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHh
Q psy12984 53 LPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYN 132 (178)
Q Consensus 53 ~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~ 132 (178)
..+.+.+.++. +|++++ |++.++++|..+||..|||+|..+||.++.|+|++++||||||||++|++|+++.+..
T Consensus 5 ~~~~~~p~~~~---~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~ 79 (417)
T 2i4i_A 5 ATGNNCPPHIE---SFSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYS 79 (417)
T ss_dssp EESTTCCCCCS---SGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCcCCcccC---CHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 34555555544 499998 9999999999999999999999999999999999999999999999999999998875
Q ss_pred ccC----------------CCCCceEEEeecHHHHHHHHHHHHHHhhhcC
Q psy12984 133 LKF----------------MPRNGKSWQGKLRPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 133 ~~~----------------~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~ 166 (178)
... .....++|++|||+||.|+++.+..++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (417)
T 2i4i_A 80 DGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR 129 (417)
T ss_dssp HCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS
T ss_pred ccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC
Confidence 321 1235789999999999999999999876544
No 14
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=8.5e-22 Score=155.41 Aligned_cols=97 Identities=25% Similarity=0.305 Sum_probs=87.3
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
..+|++++ |++.++++|.++||..|+++|.++|+.++.|+|++++++||+|||++|++|++..+... ....+++|+
T Consensus 13 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 88 (220)
T 1t6n_A 13 SSGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVM 88 (220)
T ss_dssp -CCSTTSC--CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEE
T ss_pred CCCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEE
Confidence 35699998 99999999999999999999999999999999999999999999999999999977542 234588999
Q ss_pred eecHHHHHHHHHHHHHHhhhc
Q psy12984 145 GKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+||++|+.|+++.+..+...+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~ 109 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYM 109 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTS
T ss_pred eCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999987665
No 15
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.86 E-value=8.7e-22 Score=157.11 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=87.5
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
..+|++++ |++.++++|.++||..|+++|.++|+.++.|+|++++++||||||++|++|++..+... ....+++|+
T Consensus 23 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil 98 (230)
T 2oxc_A 23 PADFESLL--LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILIL 98 (230)
T ss_dssp -CCGGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CCCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 35699998 99999999999999999999999999999999999999999999999999999987543 335589999
Q ss_pred eecHHHHHHHHHHHHHHhhhc
Q psy12984 145 GKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+|||+|+.|+++.+..++...
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~ 119 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKM 119 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS
T ss_pred eCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999887654
No 16
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=6.5e-22 Score=158.69 Aligned_cols=98 Identities=23% Similarity=0.355 Sum_probs=88.5
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |++.++++|..+||..|+++|..+|+.++.|+|++++++||||||++|++|+++.+... ....+++|++
T Consensus 30 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~ 105 (237)
T 3bor_A 30 DNFDDMN--LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLA 105 (237)
T ss_dssp CSGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEE
Confidence 5699998 99999999999999999999999999999999999999999999999999999987542 2455899999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCC
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
|||+|+.|+++.+..++...+.
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTC
T ss_pred CcHHHHHHHHHHHHHHhhhcCc
Confidence 9999999999999998765543
No 17
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.86 E-value=1.9e-21 Score=153.61 Aligned_cols=98 Identities=26% Similarity=0.380 Sum_probs=88.6
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |++.++++|.++||..|+++|..+|+.++.|+|+++++|||||||++|++|+++.+... ....++++++
T Consensus 14 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil~ 89 (224)
T 1qde_A 14 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLA 89 (224)
T ss_dssp CCGGGGT--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEEC
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEEE
Confidence 4699998 99999999999999999999999999999999999999999999999999999988543 3345899999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCC
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
|||+|+.|+++.+..+....+.
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhcccCc
Confidence 9999999999999998766543
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.85 E-value=5e-21 Score=149.08 Aligned_cols=96 Identities=32% Similarity=0.395 Sum_probs=86.7
Q ss_pred chHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhcc-CCCCCceEEEe
Q psy12984 67 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK-FMPRNGKSWQG 145 (178)
Q Consensus 67 ~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~-~~~~~~~~~l~ 145 (178)
+|++++ |++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+.... .....+++|++
T Consensus 2 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFP--LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred ChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 589998 999999999999999999999999999999999999999999999999999999886432 13456899999
Q ss_pred ecHHHHHHHHHHHHHHhhh
Q psy12984 146 KLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~ 164 (178)
|||+|+.|+++.+..++..
T Consensus 80 P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH 98 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999988654
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.85 E-value=4.4e-21 Score=162.47 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=96.7
Q ss_pred ccCCCCCCcCCCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCchhhHhHHHHHHH
Q psy12984 52 QLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVEL 129 (178)
Q Consensus 52 ~~~~~~~~~~~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g--~dvi~~a~TGsGKTlaf~lp~l~~ 129 (178)
.....+.+.++.+..+|++++ |++.++++|.++||..|+++|..+|+.++.| +|+++++|||||||++|++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~ 88 (412)
T 3fht_A 11 EVLQRDPNSPLYSVKSFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 88 (412)
T ss_dssp HHHTTCTTSTTCCSSCTGGGT--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeecccCCCCccccCCHhhCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHH
Confidence 334556666777888999998 9999999999999999999999999999987 999999999999999999999998
Q ss_pred HHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 130 IYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 130 l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+... ....+++|++||++||.|++..+..+...+
T Consensus 89 ~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 89 VEPA--NKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CCTT--SCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred hhhc--CCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 7553 234488999999999999999999987664
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.83 E-value=1.3e-20 Score=160.45 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=88.7
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
..+|++++ |++.++++|..+||..|+|+|..+|+.++.|+|++++++||||||++|++|+++.+... ....+++|+
T Consensus 36 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil 111 (410)
T 2j0s_A 36 TPTFDTMG--LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALIL 111 (410)
T ss_dssp CCSGGGGC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEE
T ss_pred CCCHhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEE
Confidence 35699998 99999999999999999999999999999999999999999999999999999877432 345689999
Q ss_pred eecHHHHHHHHHHHHHHhhhcCC
Q psy12984 145 GKLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
+|||+|+.|+++.+..++..++.
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTC
T ss_pred cCcHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999998766543
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.81 E-value=7.2e-20 Score=162.62 Aligned_cols=99 Identities=30% Similarity=0.425 Sum_probs=85.8
Q ss_pred cchHhhcc--cCCHHHHHHHHHCCCCCCcHHHHHhhcccc--CCCcEEEEccCCCchhhHhHHHHHHHHHhccC--CCCC
Q psy12984 66 TQFEALKG--KVCENTLKAIADMGFTKMTEIQARTIPPLL--EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRN 139 (178)
Q Consensus 66 ~~f~~l~~--~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l--~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~--~~~~ 139 (178)
.+|++|.. .|+++++++|..+||..|+|+|..+|+.++ .|+|++++||||||||++|++|+++++..... ....
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 34666642 399999999999999999999999999999 67999999999999999999999999977542 2245
Q ss_pred ceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 140 GKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 140 ~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
+++||+|||+||.|++..+..++..
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998654
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.81 E-value=1e-19 Score=153.24 Aligned_cols=97 Identities=25% Similarity=0.305 Sum_probs=86.8
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
...|++++ |++.++++|.++||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..+... ....+++|+
T Consensus 7 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil 82 (391)
T 1xti_A 7 SSGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVM 82 (391)
T ss_dssp --CGGGGC--CCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEE
T ss_pred CCChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEE
Confidence 45799998 99999999999999999999999999999999999999999999999999999877542 334588999
Q ss_pred eecHHHHHHHHHHHHHHhhhc
Q psy12984 145 GKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+||++|+.|++..+..+...+
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~ 103 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYM 103 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999987665
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.81 E-value=6.9e-20 Score=153.84 Aligned_cols=98 Identities=27% Similarity=0.350 Sum_probs=88.2
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEE
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSW 143 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g--~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~ 143 (178)
.+|++++ |++.++++|.++||..|+|+|..+|+.++.| +|+++++|||||||++|++|++..+... .....+++
T Consensus 5 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 80 (395)
T 3pey_A 5 KSFDELG--LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAIC 80 (395)
T ss_dssp CSSTTSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEE
T ss_pred cCHhhCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEE
Confidence 5699998 9999999999999999999999999999988 9999999999999999999999987543 24558899
Q ss_pred EeecHHHHHHHHHHHHHHhhhcCC
Q psy12984 144 QGKLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 144 l~Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
++||++|+.|++..+..++...+.
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred ECCCHHHHHHHHHHHHHHhcccCe
Confidence 999999999999999998765543
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.80 E-value=1.1e-19 Score=153.90 Aligned_cols=98 Identities=29% Similarity=0.374 Sum_probs=88.4
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |++.++++|.++||..|+|+|..+|+.++.|+|+++++|||||||++|++|++..+... ....+++|++
T Consensus 21 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~ 96 (400)
T 1s2m_A 21 NTFEDFY--LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIMV 96 (400)
T ss_dssp CCGGGGC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEEEc
Confidence 5699998 99999999999999999999999999999999999999999999999999999877542 2345889999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCC
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
||++|+.|+++.+..++...+.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCc
Confidence 9999999999999998876543
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=2e-19 Score=161.18 Aligned_cols=99 Identities=31% Similarity=0.449 Sum_probs=86.4
Q ss_pred cchHhhc--ccCCHHHHHHHHHCCCCCCcHHHHHhhcccc--CCCcEEEEccCCCchhhHhHHHHHHHHHhccC--CCCC
Q psy12984 66 TQFEALK--GKVCENTLKAIADMGFTKMTEIQARTIPPLL--EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRN 139 (178)
Q Consensus 66 ~~f~~l~--~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l--~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~--~~~~ 139 (178)
.+|++|. ..|+++++++|..+||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ....
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 3466664 2499999999999999999999999999999 78999999999999999999999999977532 2345
Q ss_pred ceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 140 GKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 140 ~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
+++||+|||+||.|++..+..++..
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998754
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=151.84 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=89.3
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ +++.++++|.+.||..|+++|..+|+.++.|+|++++++||||||++|++|+++.+... ....++++++
T Consensus 40 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~ 115 (414)
T 3eiq_A 40 DSFDDMN--LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALVLA 115 (414)
T ss_dssp CCGGGGC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred cCHhhCC--CCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEEEe
Confidence 5699998 99999999999999999999999999999999999999999999999999999987542 2455789999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
||++|+.|+++.+..++...+..
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~ 138 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGAS 138 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCC
T ss_pred ChHHHHHHHHHHHHHHhcccCce
Confidence 99999999999999988766543
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.79 E-value=1.4e-19 Score=152.40 Aligned_cols=98 Identities=26% Similarity=0.380 Sum_probs=88.3
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.+|++++ |++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... .....+++++
T Consensus 21 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~ 96 (394)
T 1fuu_A 21 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLA 96 (394)
T ss_dssp CSSGGGC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEEC
T ss_pred CChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEEc
Confidence 4599998 99999999999999999999999999999999999999999999999999999987543 3455889999
Q ss_pred ecHHHHHHHHHHHHHHhhhcCC
Q psy12984 146 KLRPLTNGVYLVACNVFKSTQP 167 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~~~~~~ 167 (178)
||++|+.|++..+..+....+.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhccCCe
Confidence 9999999999999988766543
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=5e-19 Score=147.20 Aligned_cols=96 Identities=31% Similarity=0.422 Sum_probs=86.8
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCC-CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g-~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
.+|++++ |++.++++|.++||..|+|+|..+|+.++.| +++++++|||||||++|++|++..+.. .+..+++++
T Consensus 6 ~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---~~~~~~lil 80 (367)
T 1hv8_A 6 MNFNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIIL 80 (367)
T ss_dssp CCGGGSS--CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEE
T ss_pred CchhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---cCCCcEEEE
Confidence 4699998 9999999999999999999999999999988 799999999999999999999987754 345688999
Q ss_pred eecHHHHHHHHHHHHHHhhhcC
Q psy12984 145 GKLRPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l~~~~~ 166 (178)
+|+++|+.|+++.+..+....+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSC
T ss_pred cCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999876543
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.74 E-value=5.6e-18 Score=139.52 Aligned_cols=86 Identities=36% Similarity=0.487 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHH
Q psy12984 75 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGV 154 (178)
Q Consensus 75 l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi 154 (178)
|++++.++|.++||..|+|+|..+|+.++.|+++++++|||+|||++|++|+++. ...+++++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999873 34789999999999999
Q ss_pred HHHHHHHhhhcCCC
Q psy12984 155 YLVACNVFKSTQPP 168 (178)
Q Consensus 155 ~~~~~~l~~~~~~~ 168 (178)
+..+..++..++..
T Consensus 73 ~~~~~~~~~~~~~~ 86 (337)
T 2z0m_A 73 ASHIRDIGRYMDTK 86 (337)
T ss_dssp HHHHHHHTTTSCCC
T ss_pred HHHHHHHhhhcCCc
Confidence 99999987765543
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.68 E-value=7.2e-17 Score=138.08 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHH
Q psy12984 78 NTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYL 156 (178)
Q Consensus 78 ~ll~~l~~-~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~ 156 (178)
++.+.+.+ .|| .|||+|..+|+.++.|+|+++++|||||||++|++|++..+ ..+.+++||+|||+||.|++.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----RKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-----TTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHH
Confidence 34455655 577 89999999999999999999999999999999999998876 235689999999999999999
Q ss_pred HHHHHhh
Q psy12984 157 VACNVFK 163 (178)
Q Consensus 157 ~~~~l~~ 163 (178)
.+..++.
T Consensus 83 ~~~~~~~ 89 (414)
T 3oiy_A 83 RLQKLAD 89 (414)
T ss_dssp HHHHHCC
T ss_pred HHHHHcc
Confidence 9999765
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.68 E-value=9.2e-17 Score=147.30 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=82.4
Q ss_pred chHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 67 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 67 ~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
+|++++ |++++.+++...||..|+++|..+|+. ++.|++++++||||||||++|.+|+++.+... +..++|++
T Consensus 2 ~f~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELR--VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIV 75 (720)
T ss_dssp BGGGCC--SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred cHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEc
Confidence 589998 999999999999999999999999998 88999999999999999999999999988742 35889999
Q ss_pred ecHHHHHHHHHHHHHHh
Q psy12984 146 KLRPLTNGVYLVACNVF 162 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l~ 162 (178)
|+|+||.|++..+..+.
T Consensus 76 P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWE 92 (720)
T ss_dssp SSGGGHHHHHHHTGGGG
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999986543
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-17 Score=160.03 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=77.0
Q ss_pred chHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEee
Q psy12984 67 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGK 146 (178)
Q Consensus 67 ~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~P 146 (178)
.|..++ +++.+...+...++..|+++|..||+.++.|+|+|++|+||||||++|.+|++..+.. +.+++|++|
T Consensus 163 ~~~~~~--l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~P 235 (1108)
T 3l9o_A 163 NYDYTP--IAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSP 235 (1108)
T ss_dssp CCCSST--TTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEES
T ss_pred CcccCC--CChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcC
Confidence 344444 6666666666667778999999999999999999999999999999999999998854 458999999
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy12984 147 LRPLTNGVYLVACNVFK 163 (178)
Q Consensus 147 tr~La~qi~~~~~~l~~ 163 (178)
||+||+|++..+..++.
T Consensus 236 traLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 99999999999998775
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.9e-16 Score=144.96 Aligned_cols=90 Identities=30% Similarity=0.389 Sum_probs=82.2
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhcc-ccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPP-LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~-~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
.+|++++ |++++.+++...||..|+++|..+|+. +..|++++++||||||||++|.+|+++.+... +..++|+
T Consensus 8 ~~~~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i 81 (715)
T 2va8_A 8 MPIEDLK--LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYV 81 (715)
T ss_dssp CBGGGSS--SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEE
T ss_pred CcHHHcC--CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEE
Confidence 4699998 999999999999999999999999999 78999999999999999999999999988642 3588999
Q ss_pred eecHHHHHHHHHHHHHH
Q psy12984 145 GKLRPLTNGVYLVACNV 161 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~l 161 (178)
+|+|+||.|++..++.+
T Consensus 82 ~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDW 98 (715)
T ss_dssp CSCHHHHHHHHHHHGGG
T ss_pred eCcHHHHHHHHHHHHHh
Confidence 99999999999998544
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.66 E-value=1.1e-16 Score=144.75 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=74.9
Q ss_pred hhcccCCHHHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecH
Q psy12984 70 ALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLR 148 (178)
Q Consensus 70 ~l~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr 148 (178)
+++ +++.+.+.|.+ +||..|+|+|..+|+.++.|+|+++.+|||+|||++|++|++.. ...++||+||+
T Consensus 25 ~~~--l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~~ 94 (591)
T 2v1x_A 25 DFP--WSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPLI 94 (591)
T ss_dssp CST--THHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSCH
T ss_pred cCC--CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCHH
Confidence 455 89999999998 79999999999999999999999999999999999999999751 34789999999
Q ss_pred HHHHHHHHHHHHH
Q psy12984 149 PLTNGVYLVACNV 161 (178)
Q Consensus 149 ~La~qi~~~~~~l 161 (178)
+|+.|++..+..+
T Consensus 95 ~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 95 SLMEDQLMVLKQL 107 (591)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999886
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.65 E-value=4.4e-17 Score=149.07 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=79.1
Q ss_pred chHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEee
Q psy12984 67 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGK 146 (178)
Q Consensus 67 ~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~P 146 (178)
+|++|+.+|++.+.+++...||..|+++|.++|+.++.|++++++||||||||++|.+|+++.+.. +.+++|++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P 76 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVP 76 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEES
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeC
Confidence 477886669999999999999999999999999999999999999999999999999999998764 358899999
Q ss_pred cHHHHHHHHHHHHHH
Q psy12984 147 LRPLTNGVYLVACNV 161 (178)
Q Consensus 147 tr~La~qi~~~~~~l 161 (178)
+|+||.|++..++.+
T Consensus 77 ~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 77 LRALAGEKYESFKKW 91 (702)
T ss_dssp SHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998543
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.64 E-value=8.6e-17 Score=143.26 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=77.6
Q ss_pred chHhhcccCCHHHHHHHHH-CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 67 QFEALKGKVCENTLKAIAD-MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 67 ~f~~l~~~l~~~ll~~l~~-~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
.|++++ |++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...++||+
T Consensus 3 ~fe~l~--L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~ 72 (523)
T 1oyw_A 3 QAEVLN--LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVS 72 (523)
T ss_dssp CCCCSS--HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEEC
T ss_pred ChhhCC--CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEEC
Confidence 588887 99999999998 89999999999999999999999999999999999999999742 23679999
Q ss_pred ecHHHHHHHHHHHHHH
Q psy12984 146 KLRPLTNGVYLVACNV 161 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l 161 (178)
|+++|+.|++..+..+
T Consensus 73 P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN 88 (523)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHc
Confidence 9999999999998875
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.63 E-value=4.4e-16 Score=144.88 Aligned_cols=76 Identities=20% Similarity=0.113 Sum_probs=68.5
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 85 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 85 ~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
.+|| +||+||..+||.++.|+ |+.++||+|||++|++|++...+. +.+++||+|||+||.|++.++..+.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4899 99999999999999999 899999999999999999854432 458999999999999999999999999
Q ss_pred cCCC
Q psy12984 165 TQPP 168 (178)
Q Consensus 165 ~~~~ 168 (178)
++..
T Consensus 151 lgl~ 154 (844)
T 1tf5_A 151 LGLT 154 (844)
T ss_dssp TTCC
T ss_pred cCCe
Confidence 8654
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.63 E-value=4e-16 Score=141.53 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=72.5
Q ss_pred HHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHH
Q psy12984 80 LKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVAC 159 (178)
Q Consensus 80 l~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~ 159 (178)
..++..+||..|+++|..+|+.++.|+|+|++++||+|||++|++|+++.+..........+++|+||++|+.|++.++.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999998876543334688999999999999999999
Q ss_pred HHhhhcC
Q psy12984 160 NVFKSTQ 166 (178)
Q Consensus 160 ~l~~~~~ 166 (178)
.++...+
T Consensus 83 ~~~~~~~ 89 (696)
T 2ykg_A 83 KYFERHG 89 (696)
T ss_dssp HHTTTTT
T ss_pred HHhccCC
Confidence 9886543
No 39
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.3e-16 Score=141.12 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHCCCCCCcHHHHHhhccccCC--CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHH
Q psy12984 74 KVCENTLKAIADMGFTKMTEIQARTIPPLLEG--RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLT 151 (178)
Q Consensus 74 ~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g--~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La 151 (178)
.+++.+++++.+.||..|+++|..||+.++.| ++++++++||||||++|++|++..+... ....++++++|+++|+
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P~~~L~ 202 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAPSRELA 202 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECSCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEECcHHHH
Confidence 38899999999999999999999999999998 9999999999999999999999987553 3345899999999999
Q ss_pred HHHHHHHHHHhhhcC
Q psy12984 152 NGVYLVACNVFKSTQ 166 (178)
Q Consensus 152 ~qi~~~~~~l~~~~~ 166 (178)
.|+++.+..++...+
T Consensus 203 ~Q~~~~~~~~~~~~~ 217 (508)
T 3fho_A 203 RQIMDVVTEMGKYTE 217 (508)
T ss_dssp HHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999876544
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.62 E-value=1e-15 Score=134.30 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 86 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
++...|+|+|..+|+.++.|+|++++++||||||++|++|+++.+..........++||+||++|+.|++..+..++...
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34558999999999999999999999999999999999999999987544446789999999999999999999998876
Q ss_pred CCC
Q psy12984 166 QPP 168 (178)
Q Consensus 166 ~~~ 168 (178)
+..
T Consensus 83 ~~~ 85 (556)
T 4a2p_A 83 GYS 85 (556)
T ss_dssp TCC
T ss_pred Cce
Confidence 443
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=133.22 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhcCCC
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKSTQPP 168 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~~~ 168 (178)
.|+|+|..+|+.++.|+|++++++||+|||++|++|+++.+..........++||+||++|+.|++..+..++...+..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 7999999999999999999999999999999999999999987544446789999999999999999999998776443
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.58 E-value=3.5e-15 Score=142.56 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=72.2
Q ss_pred HHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHH
Q psy12984 79 TLKAIA-DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLV 157 (178)
Q Consensus 79 ll~~l~-~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~ 157 (178)
+.+.+. .+||. | ++|..+||.++.|+|++++|+||||||+ |++|++.++.. .+.++++|+|||+||.|++.+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEEEEeccHHHHHHHHHH
Confidence 334443 48999 9 9999999999999999999999999999 99999998864 356899999999999999999
Q ss_pred HHHHhhhcCC
Q psy12984 158 ACNVFKSTQP 167 (178)
Q Consensus 158 ~~~l~~~~~~ 167 (178)
+..++..++.
T Consensus 119 l~~l~~~~~i 128 (1054)
T 1gku_B 119 IRKYAEKAGV 128 (1054)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHhhcCC
Confidence 9999987765
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.58 E-value=3.8e-15 Score=138.18 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=71.5
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 85 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 85 ~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
-+|+..|+|+|..+|+.++.|+|+|++++||||||++|++|++..+..........++||+||++|+.|++..+..++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999999999998754444678999999999999999999999876
Q ss_pred cCCC
Q psy12984 165 TQPP 168 (178)
Q Consensus 165 ~~~~ 168 (178)
.+..
T Consensus 323 ~~~~ 326 (797)
T 4a2q_A 323 QGYS 326 (797)
T ss_dssp GTCC
T ss_pred CCce
Confidence 6433
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.57 E-value=5.3e-15 Score=141.92 Aligned_cols=78 Identities=17% Similarity=0.064 Sum_probs=67.8
Q ss_pred HHHHHH-HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHH
Q psy12984 79 TLKAIA-DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLV 157 (178)
Q Consensus 79 ll~~l~-~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~ 157 (178)
+.+.+. ..|| .|||+|..|||.++.|+|++++|+||||||++|++|++..+ ..+.+++||+|||+||.|++..
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-----~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-----TTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-----hcCCeEEEEechHHHHHHHHHH
Confidence 334443 3789 69999999999999999999999999999999988888877 2356899999999999999999
Q ss_pred HHHHh
Q psy12984 158 ACNVF 162 (178)
Q Consensus 158 ~~~l~ 162 (178)
+..++
T Consensus 141 l~~l~ 145 (1104)
T 4ddu_A 141 LQKLA 145 (1104)
T ss_dssp HHTTS
T ss_pred HHHhh
Confidence 99865
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.53 E-value=5.5e-15 Score=137.48 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 86 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+|. +||+||..++|.++.|+ |+.++||||||++|++|++..... +.++++++|||+||.|++.++..+.+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----SSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 576 99999999999999998 899999999999999999875543 4589999999999999999999999988
Q ss_pred CCC
Q psy12984 166 QPP 168 (178)
Q Consensus 166 ~~~ 168 (178)
+..
T Consensus 143 gl~ 145 (853)
T 2fsf_A 143 GLT 145 (853)
T ss_dssp TCC
T ss_pred CCe
Confidence 654
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.53 E-value=9.7e-15 Score=137.98 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=70.0
Q ss_pred HHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 83 IADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 83 l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
..-.|+..|+++|..+|+.++.|+|+|++++||+|||++|++|+++.+..........++||+||++|+.|++..+..++
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 34457889999999999999999999999999999999999999998876543336688999999999999999999998
Q ss_pred hhcCC
Q psy12984 163 KSTQP 167 (178)
Q Consensus 163 ~~~~~ 167 (178)
...+.
T Consensus 321 ~~~~~ 325 (936)
T 4a2w_A 321 ERQGY 325 (936)
T ss_dssp HTTTC
T ss_pred cccCc
Confidence 76543
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.53 E-value=1.4e-14 Score=143.93 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHH
Q psy12984 75 VCENTLKAIADMGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNG 153 (178)
Q Consensus 75 l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~-g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~q 153 (178)
|.+...+++...+|..++|+|.++|+.++. +.|++++||||||||++|.+|+++.+.. .++.+++|++|||+||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~---~~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ---SSEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH---CTTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh---CCCCEEEEEcChHHHHHH
Confidence 667788889888999999999999999875 5789999999999999999999999976 345589999999999999
Q ss_pred HHHHHHHHhhhcCCCCcceEEE
Q psy12984 154 VYLVACNVFKSTQPPTVIKVQT 175 (178)
Q Consensus 154 i~~~~~~l~~~~~~~~~~~v~~ 175 (178)
++..+...++. .++++|..
T Consensus 988 ~~~~~~~~f~~---~~g~~V~~ 1006 (1724)
T 4f92_B 988 VYMDWYEKFQD---RLNKKVVL 1006 (1724)
T ss_dssp HHHHHHHHHTT---TSCCCEEE
T ss_pred HHHHHHHHhch---hcCCEEEE
Confidence 99998765432 33444443
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.52 E-value=1.8e-14 Score=134.64 Aligned_cols=77 Identities=22% Similarity=0.132 Sum_probs=68.8
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 85 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 85 ~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
.+|+ +||+||..++|.++.|+ |+.++||+|||++|.+|++...+. +.+++|++||++||.|++.++..+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3799 99999999999999998 999999999999999999765543 348999999999999999999999999
Q ss_pred cCCCC
Q psy12984 165 TQPPT 169 (178)
Q Consensus 165 ~~~~~ 169 (178)
++..+
T Consensus 179 lGLsv 183 (922)
T 1nkt_A 179 LGLQV 183 (922)
T ss_dssp TTCCE
T ss_pred cCCeE
Confidence 86553
No 49
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=110.29 Aligned_cols=79 Identities=19% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhcc-CCCCCceEEEeecHHHHHH-HHHHHHHHhh
Q psy12984 86 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK-FMPRNGKSWQGKLRPLTNG-VYLVACNVFK 163 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~-~~~~~~~~~l~Ptr~La~q-i~~~~~~l~~ 163 (178)
.+...|+++|..+++.++.|++++++++||+|||++|+++++..+.... .....++++++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4455899999999999999999999999999999999999998876532 1235588999999999999 7777877764
Q ss_pred h
Q psy12984 164 S 164 (178)
Q Consensus 164 ~ 164 (178)
.
T Consensus 109 ~ 109 (216)
T 3b6e_A 109 K 109 (216)
T ss_dssp T
T ss_pred c
Confidence 3
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.49 E-value=4.4e-14 Score=131.44 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccccCC------CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHH
Q psy12984 79 TLKAIADMGFTKMTEIQARTIPPLLEG------RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTN 152 (178)
Q Consensus 79 ll~~l~~~g~~~pt~iQ~~aip~~l~g------~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~ 152 (178)
+.+.+..+|| .||++|..+|+.++.+ +|++++++||||||++|++|++..+.. +.++++++||++||.
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHH
Confidence 4444577999 9999999999998865 699999999999999999999998864 458999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q psy12984 153 GVYLVACNVFKSTQP 167 (178)
Q Consensus 153 qi~~~~~~l~~~~~~ 167 (178)
|++..+..++..++.
T Consensus 432 Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 432 QHYRRTVESFSKFNI 446 (780)
T ss_dssp HHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999865543
No 51
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.49 E-value=4.3e-14 Score=132.18 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 86 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+|| +||+||..++|+++.|+ |++++||||||++|++|++..... +.++++++||++||.|++.++..+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 899 99999999999999998 899999999999999999754443 3478999999999999999999999988
Q ss_pred CCCCc
Q psy12984 166 QPPTV 170 (178)
Q Consensus 166 ~~~~~ 170 (178)
+..++
T Consensus 148 GLsv~ 152 (997)
T 2ipc_A 148 GLSVG 152 (997)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 75543
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.49 E-value=1.3e-14 Score=126.83 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=61.2
Q ss_pred CCCCCcHHHHHhhccccCCCcE-EEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHH
Q psy12984 87 GFTKMTEIQARTIPPLLEGRDL-VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVAC 159 (178)
Q Consensus 87 g~~~pt~iQ~~aip~~l~g~dv-i~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~ 159 (178)
||..|+|+|+ +||.++.|+|+ +++|+||||||++|++|++..+.. .+.+++|++|||+||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc
Confidence 7889999985 79999999888 999999999999999999988765 34689999999999999999875
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.49 E-value=3.1e-15 Score=135.98 Aligned_cols=80 Identities=14% Similarity=-0.026 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHH
Q psy12984 75 VCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGV 154 (178)
Q Consensus 75 l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi 154 (178)
+++.++++|... +..|+|+|+.++|.++.|+|++++|+||||||++|++|+++.+.. .+.+++|++|||+||.|+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcChHHHHHHH
Confidence 666666555443 588999999999999999999999999999999999999998865 346899999999999999
Q ss_pred HHHHH
Q psy12984 155 YLVAC 159 (178)
Q Consensus 155 ~~~~~ 159 (178)
+..+.
T Consensus 232 ~~~l~ 236 (618)
T 2whx_A 232 EEALR 236 (618)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 98875
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.48 E-value=4.8e-14 Score=140.08 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCCCcHHHHHhhcccc-CCCcEEEEccCCCchhhHhHHHHHHHHHhccC------CCCCceEEEeecHHHHHHHHHHHH
Q psy12984 87 GFTKMTEIQARTIPPLL-EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF------MPRNGKSWQGKLRPLTNGVYLVAC 159 (178)
Q Consensus 87 g~~~pt~iQ~~aip~~l-~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~------~~~~~~~~l~Ptr~La~qi~~~~~ 159 (178)
||++++++|.+++|.++ .+.|++++||||||||++|.+|+++.+.+... ..+.+++|++|+||||+|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999876 57899999999999999999999999976422 234578999999999999999999
Q ss_pred HHhhhcCC
Q psy12984 160 NVFKSTQP 167 (178)
Q Consensus 160 ~l~~~~~~ 167 (178)
..++.++.
T Consensus 156 ~~~~~~gi 163 (1724)
T 4f92_B 156 KRLATYGI 163 (1724)
T ss_dssp HHHTTTTC
T ss_pred HHHhhCCC
Confidence 88876554
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.44 E-value=1.4e-14 Score=132.92 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=64.7
Q ss_pred HHHHCCCC-----CCcHHHH-----Hhhcccc------CCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEe
Q psy12984 82 AIADMGFT-----KMTEIQA-----RTIPPLL------EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145 (178)
Q Consensus 82 ~l~~~g~~-----~pt~iQ~-----~aip~~l------~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~ 145 (178)
+|..+||. .||++|+ .+||.++ .|+|++++|+||||||++|++|++..+.. .+.+++|++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 46667888 9999999 9999998 89999999999999999999999998765 346899999
Q ss_pred ecHHHHHHHHHHHHHH
Q psy12984 146 KLRPLTNGVYLVACNV 161 (178)
Q Consensus 146 Ptr~La~qi~~~~~~l 161 (178)
|||+||.|++..+..+
T Consensus 278 PTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGL 293 (673)
T ss_dssp SSHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999987644
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=124.39 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccC-CCCCceEEEeecHHHHHHH-HHHHHHHhhh
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF-MPRNGKSWQGKLRPLTNGV-YLVACNVFKS 164 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~-~~~~~~~~l~Ptr~La~qi-~~~~~~l~~~ 164 (178)
.|+++|..+|+.++.|+|+|++++||+|||++|++|+++.+..... .....++||+|+++|+.|+ +..+..++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999998876422 2235789999999999999 9999998764
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.2e-13 Score=128.63 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=67.1
Q ss_pred HHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 83 IADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 83 l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
....+|. |+++|..||+.++.|++++++||||||||++|.+|++..+.. +.+++|++|||+|++|++..|..++
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3446784 999999999999999999999999999999999999988743 3589999999999999999999877
Q ss_pred h
Q psy12984 163 K 163 (178)
Q Consensus 163 ~ 163 (178)
.
T Consensus 154 ~ 154 (1010)
T 2xgj_A 154 G 154 (1010)
T ss_dssp S
T ss_pred C
Confidence 5
No 58
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=104.99 Aligned_cols=87 Identities=8% Similarity=-0.030 Sum_probs=68.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHH
Q psy12984 76 CENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVY 155 (178)
Q Consensus 76 ~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~ 155 (178)
++.+.+.+...+...++++|..+++.+..|++++++|+||||||.+|.+++++.+.........++++++|+|+||.|++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 34444444443444679999999999999999999999999999999999999877644334557888999999999998
Q ss_pred HHHHHHh
Q psy12984 156 LVACNVF 162 (178)
Q Consensus 156 ~~~~~l~ 162 (178)
+.+....
T Consensus 127 ~~~~~~~ 133 (235)
T 3llm_A 127 ERVAFER 133 (235)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8776543
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.36 E-value=8.3e-13 Score=125.66 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=64.3
Q ss_pred HCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhh
Q psy12984 85 DMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFK 163 (178)
Q Consensus 85 ~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~ 163 (178)
.++| .|+++|..+|+.++.|+|++++++||||||++|++|+...+.. +.+++|++|||+|+.|++..+..++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 3577 5899999999999999999999999999999999999886643 45789999999999999999988653
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.31 E-value=4.1e-12 Score=122.39 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=70.9
Q ss_pred CCHHHHHHH-HHCCCCCCcHHHHHhhccccC----CC--cEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeec
Q psy12984 75 VCENTLKAI-ADMGFTKMTEIQARTIPPLLE----GR--DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKL 147 (178)
Q Consensus 75 l~~~ll~~l-~~~g~~~pt~iQ~~aip~~l~----g~--dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Pt 147 (178)
++..+.+.+ ...|| .|||+|..||+.++. |+ |++++++||+|||++|+++++..+.. +.++++++||
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----g~~vlvlvPt 661 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----HKQVAVLVPT 661 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----TCEEEEECSS
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCeEEEEech
Confidence 445555555 34788 479999999999876 65 99999999999999999999886643 4489999999
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy12984 148 RPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 148 r~La~qi~~~~~~l~~~~~ 166 (178)
++||.|++..+...+..++
T Consensus 662 ~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 9999999999998776544
No 61
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.31 E-value=2.2e-12 Score=105.43 Aligned_cols=70 Identities=14% Similarity=-0.074 Sum_probs=61.9
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhh
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFK 163 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~ 163 (178)
.|+++|..+++.++.+.+.+++++||+|||+++++++...+.. ....+++++||++|+.|+++.+..++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 7999999999999988889999999999999999988887654 223789999999999999999998754
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.30 E-value=2.3e-12 Score=112.97 Aligned_cols=72 Identities=14% Similarity=-0.089 Sum_probs=63.9
Q ss_pred CCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhh
Q psy12984 88 FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFK 163 (178)
Q Consensus 88 ~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~ 163 (178)
...|+++|..|++.++.++|++++++||+|||++|++|+...+.. ...++++|+||++|+.|++..+..+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999999999887764 234889999999999999999988743
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.29 E-value=8.8e-12 Score=108.22 Aligned_cols=64 Identities=17% Similarity=0.039 Sum_probs=58.3
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
.|+++|..+++.++.+.+++++++||+|||++|++++... ...++|++|+++|+.|++..|..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999998763 347899999999999999998873
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.27 E-value=3.1e-12 Score=114.30 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCCCCcHHHHHhhcc----ccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 87 GFTKMTEIQARTIPP----LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 87 g~~~pt~iQ~~aip~----~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
|| .|.|.|...+.. +..|+|+++.||||+|||++|++|++. ...+++|++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--------~~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--------VKPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--------HCSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--------CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 45 789999987764 468999999999999999999999997 24588999999999999999888776
Q ss_pred hhc
Q psy12984 163 KST 165 (178)
Q Consensus 163 ~~~ 165 (178)
+..
T Consensus 72 ~~~ 74 (551)
T 3crv_A 72 EKR 74 (551)
T ss_dssp CSS
T ss_pred hhc
Confidence 554
No 65
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.25 E-value=9.5e-12 Score=105.66 Aligned_cols=69 Identities=17% Similarity=0.017 Sum_probs=62.6
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhh
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFK 163 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~ 163 (178)
.|+|+|..+++.++.+ +++++++||+|||++++++++..+.. ....++|++|+++|+.|++..+..+++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 7999999999999999 99999999999999999999988762 345889999999999999999998763
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.24 E-value=6.4e-12 Score=110.01 Aligned_cols=57 Identities=18% Similarity=0.038 Sum_probs=50.2
Q ss_pred hccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHH
Q psy12984 99 IPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVAC 159 (178)
Q Consensus 99 ip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~ 159 (178)
...+..|++++++|+||||||++|++|+++.+.. .+.+++|++|||+||.|++..+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc
Confidence 4456788999999999999999999999998864 24589999999999999999876
No 67
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.22 E-value=1.6e-11 Score=111.63 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCcHHHHHhhc----cccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 90 KMTEIQARTIP----PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 90 ~pt~iQ~~aip----~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
.|.+.|...+. .+..|+|+++.||||+|||++|++|++.++... ..+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 67888888775 456899999999999999999999999988642 3478999999999999999999988764
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.21 E-value=1e-11 Score=108.18 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=50.5
Q ss_pred cccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
.++.|+|++++|+||||||++|++|+++.+.. .+.+++|++|||+||.|++..+..+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC
Confidence 57889999999999999999999999998865 2458999999999999999988743
No 69
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.19 E-value=5e-11 Score=95.78 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=56.6
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACN 160 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~ 160 (178)
.|+++|..++..++.+.+++++++||+|||++++.++... ...+++++|+++|+.|++..+..
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999998887652 34789999999999999999877
No 70
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.18 E-value=2.4e-11 Score=108.49 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=53.7
Q ss_pred CCCCCCcHHHHHhhc----cccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 86 MGFTKMTEIQARTIP----PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip----~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
.|| .|+|+|..++. .+..|+++++.||||+|||++|++|++.. ..+++|++||++|+.|++..+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 478 89999999865 45689999999999999999999999753 347899999999999999887663
No 71
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.15 E-value=7.5e-11 Score=109.61 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=71.2
Q ss_pred cchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccC-CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEE
Q psy12984 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQ 144 (178)
Q Consensus 66 ~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~-g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l 144 (178)
.+|.+++ +++.+.+.+...| ..|+++|+.+|+.++. |.+++++|+||||||+ ++|++-.........+..++++
T Consensus 72 ~~f~~~~--l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 72 NPFTGRE--FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp CTTTCSB--CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCccccC--CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 4688888 9999999999988 7999999999998775 5789999999999999 6777632222111124467889
Q ss_pred eecHHHHHHHHHHHHH
Q psy12984 145 GKLRPLTNGVYLVACN 160 (178)
Q Consensus 145 ~Ptr~La~qi~~~~~~ 160 (178)
+|+|+||.|++..+..
T Consensus 147 ~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAE 162 (773)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999876544
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.07 E-value=1.3e-10 Score=100.85 Aligned_cols=52 Identities=19% Similarity=0.101 Sum_probs=45.3
Q ss_pred CCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVAC 159 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~ 159 (178)
.|+|++++++||||||++|++|+++.+.. .+.++++++||++||.|++..+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC
Confidence 47899999999999999999999977654 34589999999999999998875
No 73
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.02 E-value=1.2e-10 Score=106.57 Aligned_cols=64 Identities=13% Similarity=-0.117 Sum_probs=51.2
Q ss_pred CcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 91 MTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 91 pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
+++.|...++.+..++|++++|+||||||++|.+|+++ .+.+++|++|||+||.|++..+....
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------~g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------QGYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------CCCeEEEEcchHHHHHHHHHHHHHHh
Confidence 34455555555668899999999999999999999876 13488999999999999998766544
No 74
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.91 E-value=3.9e-10 Score=100.82 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=46.3
Q ss_pred CCcHHHHHhhccccC----C-CcEEEEccCCCchhhHhHHHHHHHHHhcc-----CCCCCceEEEeecHHHHHHHH-HHH
Q psy12984 90 KMTEIQARTIPPLLE----G-RDLVGSAKTGSGKTLAFLVPAVELIYNLK-----FMPRNGKSWQGKLRPLTNGVY-LVA 158 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~----g-~dvi~~a~TGsGKTlaf~lp~l~~l~~~~-----~~~~~~~~~l~Ptr~La~qi~-~~~ 158 (178)
.|+++|..||+.++. | ++++++++||||||++++ +++..+.... .....++++|+||++|+.|++ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 679999999999999954 5555554432 114568999999999999999 776
Q ss_pred HHHh
Q psy12984 159 CNVF 162 (178)
Q Consensus 159 ~~l~ 162 (178)
..+.
T Consensus 257 ~~~~ 260 (590)
T 3h1t_A 257 TPFG 260 (590)
T ss_dssp TTTC
T ss_pred Hhcc
Confidence 6543
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.84 E-value=4.6e-09 Score=96.40 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=42.8
Q ss_pred cccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
..+.|++++++||||||||+ +++..+... ...+|++|||+||.|+++.+..+
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHhc
Confidence 45789999999999999998 555655542 24488999999999999998875
No 76
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.78 E-value=2.9e-09 Score=101.72 Aligned_cols=72 Identities=19% Similarity=-0.008 Sum_probs=58.9
Q ss_pred CCCcHHHHHhhccccC--------------CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHH
Q psy12984 89 TKMTEIQARTIPPLLE--------------GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGV 154 (178)
Q Consensus 89 ~~pt~iQ~~aip~~l~--------------g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi 154 (178)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++++|+|+++|+.|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~ 346 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQT 346 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHH
Confidence 3599999999998765 478999999999999997 7777655431 2235899999999999999
Q ss_pred HHHHHHHhh
Q psy12984 155 YLVACNVFK 163 (178)
Q Consensus 155 ~~~~~~l~~ 163 (178)
...+..+..
T Consensus 347 ~~~f~~f~~ 355 (1038)
T 2w00_A 347 MKEYQRFSP 355 (1038)
T ss_dssp HHHHHTTST
T ss_pred HHHHHHhcc
Confidence 999888754
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.71 E-value=6.1e-08 Score=89.57 Aligned_cols=80 Identities=24% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 86 MGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 86 ~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
+|. +|+++|.....++..|+ |+...||+|||+++.+|++-..+. +.++.+++|++.||.|-..++..+..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 677 89999999998888888 889999999999999999754443 5578899999999999999999999999
Q ss_pred CCCCcceE
Q psy12984 166 QPPTVIKV 173 (178)
Q Consensus 166 ~~~~~~~v 173 (178)
|..+++.+
T Consensus 144 glsvg~i~ 151 (822)
T 3jux_A 144 GLRVGVIN 151 (822)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEEc
Confidence 98766543
No 78
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.44 E-value=2.5e-07 Score=83.74 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=59.7
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCchh--hHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhc
Q psy12984 92 TEIQARTIPPLLEGRDLVGSAKTGSGKT--LAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKST 165 (178)
Q Consensus 92 t~iQ~~aip~~l~g~dvi~~a~TGsGKT--laf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~ 165 (178)
++.|+.|++.++.++++++++++||||| ++++++.+..+.. ..+.++++++||+.+|.++...+......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 7788888876532 234577889999999999998887766554
No 79
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.44 E-value=3.5e-07 Score=79.67 Aligned_cols=70 Identities=10% Similarity=-0.058 Sum_probs=54.6
Q ss_pred CCcHHHHHhhccc----cCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhh
Q psy12984 90 KMTEIQARTIPPL----LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFK 163 (178)
Q Consensus 90 ~pt~iQ~~aip~~----l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~ 163 (178)
.|+|+|..++..+ ..|+++|++.+||+|||+..+ .++..+... .....++|||| ..|+.|....+.+++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~--~~~~~~LIv~P-~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE--NELTPSLVICP-LSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT--TCCSSEEEEEC-STTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc--CCCCCEEEEcc-HHHHHHHHHHHHHHCC
Confidence 6899999999766 357899999999999999965 444444432 33457899999 5688999999988753
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.27 E-value=1.1e-06 Score=83.45 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=56.7
Q ss_pred CCCcHHHHHhhccccC--CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 89 TKMTEIQARTIPPLLE--GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 89 ~~pt~iQ~~aip~~l~--g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
..|+|+|..++..++. +.++|++.+||+|||+.++..+...+.. ....+++||||+ .|+.|.+..+...+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 3689999999987765 4689999999999999998777766654 334478999999 99999998886543
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.73 E-value=8.3e-05 Score=67.44 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=55.6
Q ss_pred CCcHHHHHhhccc---------cCCCcEEEEccCCCchhhHhHHHHHHHHHhccC--CCCCceEEEeecHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPL---------LEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKF--MPRNGKSWQGKLRPLTNGVYLVA 158 (178)
Q Consensus 90 ~pt~iQ~~aip~~---------l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~--~~~~~~~~l~Ptr~La~qi~~~~ 158 (178)
.+.|+|..++..+ ..+..+|++.++|+|||+..+..+...+..... .....++|++|+ .|..|....+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 6889999999865 346789999999999999987666655543221 123357889996 8888999898
Q ss_pred HHHhhh
Q psy12984 159 CNVFKS 164 (178)
Q Consensus 159 ~~l~~~ 164 (178)
.+++..
T Consensus 134 ~~~~~~ 139 (644)
T 1z3i_X 134 GKWLGG 139 (644)
T ss_dssp HHHHGG
T ss_pred HHHcCC
Confidence 888653
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.70 E-value=4.7e-05 Score=70.67 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=53.2
Q ss_pred CCcHHHHHhhcccc----CCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 90 KMTEIQARTIPPLL----EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 90 ~pt~iQ~~aip~~l----~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
.+.|+|..++..++ .|+++|++.++|.|||+..+..+...+... .....++|||| ..|..|....|.+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--RQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--SCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--CCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 56789999997554 789999999999999998765554443332 22346799999 778888888888775
No 83
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.56 E-value=0.00033 Score=62.67 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=56.7
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 89 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 89 ~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
..+++-|..|+.. .+..++|.|+.|||||...+--+...+.... .+..+.+++++|+..|.++...+..+++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 3678999999963 3567899999999999987766666554422 23457889999999999999998887653
No 84
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.18 E-value=0.00048 Score=62.86 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHhhcccc----CC-CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 87 GFTKMTEIQARTIPPLL----EG-RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 87 g~~~pt~iQ~~aip~~l----~g-~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
+| .|++.|..+|..+. .| +..++.+.||||||+.+.- ++..+. + .+++|+|+..||.|++..|..+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~~------~-~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEALG------R-PALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHT------C-CEEEEESSHHHHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHhC------C-CEEEEecCHHHHHHHHHHHHHH
Confidence 67 89999999987654 34 3567889999999997753 333331 1 4799999999999999999988
Q ss_pred h
Q psy12984 162 F 162 (178)
Q Consensus 162 ~ 162 (178)
+
T Consensus 77 ~ 77 (664)
T 1c4o_A 77 F 77 (664)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.13 E-value=0.0014 Score=59.34 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=56.0
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
.+++-|..++-.. +..++|.|..|||||.+..--+...+.... .+..+.++++.|+..|.++...+..+++.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 4688999998643 668999999999999987766666665422 23347889999999999999998877644
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.08 E-value=0.0013 Score=59.31 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=51.5
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACN 160 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~ 160 (178)
.+++-|..|+..++.+.-+++++|+|||||.... -++..+.. ....+.++++||..-+.++...+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT---SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH---cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4578899999888877788999999999998644 34444443 2345788999999998888877654
No 87
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.99 E-value=0.0033 Score=57.72 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=56.8
Q ss_pred CCCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhh
Q psy12984 89 TKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKS 164 (178)
Q Consensus 89 ~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~ 164 (178)
..+++-|..|+-. .+..++|.|..|||||.+..--+...+.... .+..+.++++.|+..|..+...+..+++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 3688999999865 3467899999999999987766666665322 23347889999999999999988887654
No 88
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.99 E-value=0.0017 Score=63.02 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhcc-CCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK-FMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~-~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
.+|+-|..+|-.- +.+++|.|..|||||.+.+--++..+.... ..+..+.+++++|++.|..+...+...+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 6799999999654 889999999999999998878887776532 1234478899999999999988877644
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.94 E-value=0.002 Score=58.22 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=47.6
Q ss_pred CcHHHHHhhccccCCCc-EEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHH
Q psy12984 91 MTEIQARTIPPLLEGRD-LVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACN 160 (178)
Q Consensus 91 pt~iQ~~aip~~l~g~d-vi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~ 160 (178)
+.+-|..|+-.++..++ .||++|+|||||.+.+--+.+.+.+ +.+.++.+||..=+..+...+..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 45689999988887665 5889999999998755444443332 34789999998877777666543
No 90
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.91 E-value=0.0019 Score=55.96 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHCCCCCCcHHHHHhhccccCC-----CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHH
Q psy12984 84 ADMGFTKMTEIQARTIPPLLEG-----RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLV 157 (178)
Q Consensus 84 ~~~g~~~pt~iQ~~aip~~l~g-----~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~ 157 (178)
.-+.|..+++-|..|+..++.. ..+++.|+.|||||... .-++..+... .....++++||...|..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHhh
Confidence 3457889999999999866432 38999999999999643 3455555442 223677889998887766544
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0024 Score=59.54 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNV 161 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l 161 (178)
.+++-|..|+..++.+.-++|.||+|||||....- ++.++... ...+.++++||..-+.++...+...
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999888777789999999999986443 33333321 2457889999999999888887654
No 92
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.79 E-value=0.0032 Score=58.72 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=51.3
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACN 160 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~ 160 (178)
.+++-|..|+..++.+.-+++.+|+|||||.... -++..+.. ....+.++++||..-|.++...+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT---TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3578899999888887788999999999998643 34444443 2345788899999888888777654
No 93
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.51 E-value=0.0072 Score=54.22 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=48.1
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYL 156 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~ 156 (178)
.+++-|..++..++.+..+++.++.|||||... ..++..+.. .+..+++++||...|..+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHh
Confidence 578999999999998999999999999999653 233343332 24577888999988887765
No 94
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.00 E-value=0.02 Score=51.33 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=59.0
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhcC
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~ 166 (178)
.++|.|...+..+...+-+++..+-|+|||.+...-++..+.. .++..+++++|++..|..++..+..++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 4789999888766456778999999999999877656555554 3445778899999999999999998887764
No 95
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.71 E-value=0.035 Score=47.54 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=58.3
Q ss_pred CCcHHHHHhhccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHhhhcC
Q psy12984 90 KMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVFKSTQ 166 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~~~~~ 166 (178)
.++|.|...+..+...+-+++..+-+.|||...+.-++..+.. .++..+++++|++.-|..++..+..++..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 6899999888665445668889999999999877766655543 3445678899999999999998988887654
No 96
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.33 E-value=0.016 Score=52.75 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=48.5
Q ss_pred CCcHHHHHhhcccc----CCC-cEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 90 KMTEIQARTIPPLL----EGR-DLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 90 ~pt~iQ~~aip~~l----~g~-dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
.|+.-|..+|..+. .|. ..++.+-||||||+...- ++..+ ++ ..++|+|+..+|.|++..|..++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~------~~-~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV------NK-PTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------CC-CEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh------CC-CEEEEECCHHHHHHHHHHHHHHc
Confidence 68888888877543 343 467789999999987642 33322 12 47899999999999999999885
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.32 E-value=0.21 Score=36.86 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|+.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999754
No 98
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.00 E-value=0.12 Score=43.85 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=34.2
Q ss_pred hccccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHH
Q psy12984 99 IPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTN 152 (178)
Q Consensus 99 ip~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~ 152 (178)
+|.-....++++.++||||||..+ -+++..+.. .+..++++=|..++..
T Consensus 47 ~~~~~~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 47 MPRDAEPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp CCGGGGGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred cccccCcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 344345689999999999999974 455555543 2346677788888864
No 99
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.77 E-value=0.077 Score=45.74 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=29.6
Q ss_pred CccchHhhcccCCHHHHHHHHHCCCCCCcHHHHH-hh-ccccCCCcEEEEccCCCchhhHh
Q psy12984 64 SSTQFEALKGKVCENTLKAIADMGFTKMTEIQAR-TI-PPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~-ai-p~~l~g~dvi~~a~TGsGKTlaf 122 (178)
...+|+++. -...+.+.|.+.-. .|+..- .+ ......+.+++.+|+|+|||...
T Consensus 129 ~~~~~~di~--G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVA--GLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSC--SCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhc--CHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 345688886 34455555544210 011100 00 01123478999999999999753
No 100
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.68 E-value=0.3 Score=42.58 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=33.0
Q ss_pred CcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHH
Q psy12984 106 RDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACN 160 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~ 160 (178)
+=.++.++.|+|||..+. +.+ . . ...++++||++++.++.+.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~-~---~--~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRV-N---F--EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHC-C---T--TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHH----HHh-c---c--CCeEEEeCCHHHHHHHHHHhhh
Confidence 446789999999998653 111 1 1 3568999999999988877643
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.91 E-value=0.12 Score=37.09 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=16.8
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..+.++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34568999999999999965
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.78 E-value=0.16 Score=36.58 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=17.7
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
...+.+|++.+++|+|||...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346789999999999999764
No 103
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.95 E-value=0.15 Score=42.87 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.++.+++.+++|+|||...
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3579999999999999753
No 104
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.22 E-value=0.21 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..++.+++.+|+|+|||..
T Consensus 49 ~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHH
Confidence 4567899999999999975
No 105
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.49 E-value=0.74 Score=37.62 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.++.+++.+|+|+|||...
T Consensus 69 ~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 106
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.16 E-value=0.59 Score=36.42 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.+++.+++|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999753
No 107
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.96 E-value=0.37 Score=42.54 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.8
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|..++++++||||||...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHH
T ss_pred HhCCCEEEEECCCCCCHHHHH
Confidence 457889999999999999753
No 108
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.46 E-value=0.79 Score=36.94 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..++.+++.+|+|+|||..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCSEEEEECSSSSSHHHH
T ss_pred CCCceEEEECCCCcCHHHH
Confidence 3467899999999999975
No 109
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.25 E-value=0.19 Score=41.91 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.+++.+|+|+|||...
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 468999999999999753
No 110
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.20 E-value=0.38 Score=41.70 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=33.0
Q ss_pred CccchHhhcccCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 64 SSTQFEALKGKVCENTLKAIADM---GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
+..+|++.+ --+...+.|.+. =+.+|--++..-++ -.+.+|..+|+|+|||+.
T Consensus 176 p~~t~~dig--Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVG--GLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSC--SCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcC--cHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 346799987 445555555442 12234444444332 247899999999999975
No 111
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.09 E-value=0.3 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+..+++.+++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 47899999999999975
No 112
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.79 E-value=0.38 Score=35.37 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=18.0
Q ss_pred cccCCCcEEEEccCCCchhhHh
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf 122 (178)
.+..++.+++.+++|||||...
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHH
Confidence 3456788999999999999753
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.60 E-value=0.77 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
..+.+++.+++|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356899999999999975
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.48 E-value=0.3 Score=39.82 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=29.3
Q ss_pred ccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccc-----cCCCcEEEEccCCCchhhH
Q psy12984 65 STQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPL-----LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~-----l~g~dvi~~a~TGsGKTla 121 (178)
..+|+++. -.....+.|.+.=. .|. ..|.+ ...+.+++.+|+|+|||..
T Consensus 14 ~~~~~di~--G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVA--GLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSC--SCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhc--ChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 35688886 45556666655211 111 11221 2246799999999999975
No 115
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.36 E-value=1.2 Score=34.00 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=17.9
Q ss_pred ccCCCcEEEEccCCCchhhHhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
+..|.-+++.+++|+|||...+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4467889999999999998643
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.07 E-value=0.32 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|..+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999998753
No 117
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.04 E-value=1.1 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.+++.+|+|+|||...
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 378999999999999753
No 118
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.99 E-value=0.43 Score=38.04 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+.++++.+++|+|||...
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 119
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.97 E-value=2.2 Score=41.17 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=42.3
Q ss_pred cCCCcEEEEccCCCchhhHhHHHHHHHHHhc-------cCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAFLVPAVELIYNL-------KFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~-------~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
+.|.. +|.|.-|||||.+..-=++..|... ......+.++++=|++=|..+...+...+
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45655 8899999999999888888888642 11223477888888877776666655544
No 120
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.46 E-value=1 Score=34.30 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-+++++++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 467789999999999964
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.38 E-value=0.41 Score=36.21 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+..+++.+++|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4688999999999999753
No 122
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.28 E-value=0.58 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.7
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+++.+|||||||..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 556788999999999999763
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.24 E-value=0.39 Score=35.64 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
+.|+-+++++|+|+|||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999753
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.09 E-value=0.33 Score=35.10 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
+.++++.+++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999753
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.85 E-value=0.31 Score=40.52 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=19.7
Q ss_pred CCCcEEEEccCCCchhhHhHHHHHHHHH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFLVPAVELIY 131 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~lp~l~~l~ 131 (178)
.+.++++.+|+|+|||+..- -++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 45789999999999998743 2334443
No 126
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.43 E-value=1.2 Score=36.20 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHh-hccccCCC-----cEEEEccCCCchhhHhH
Q psy12984 78 NTLKAIADMGFTKMTEIQART-IPPLLEGR-----DLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 78 ~ll~~l~~~g~~~pt~iQ~~a-ip~~l~g~-----dvi~~a~TGsGKTlaf~ 123 (178)
.+.+.|.-.||. +++... +-..+.|+ .+++.+|+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 577778888886 555333 33444443 59999999999998765
No 127
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.41 E-value=1.6 Score=37.40 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.++++++.+|+|+|||...
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 4578999999999999764
No 128
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=84.22 E-value=0.77 Score=40.40 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 79 TLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 79 ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
+...+.. ++.--..+=..++-.+..|.++++.+++|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344443 34333333344455667889999999999999975
No 129
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.20 E-value=0.63 Score=36.44 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+..+++.+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467999999999999975
No 130
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.55 E-value=1.3 Score=37.02 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRP 149 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~ 149 (178)
.+.++++.++||+|||...-. ++..+.. .+..++++-|.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~----~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM----QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT----TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH----CCCEEEEEeCCcC
Confidence 577999999999999976433 2222222 2345566666654
No 131
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.29 E-value=0.36 Score=38.76 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=24.7
Q ss_pred ccchHhhcccCCHHHHHHHHHC-C--CCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 65 STQFEALKGKVCENTLKAIADM-G--FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~-g--~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
..+|++++ -.+.+.+.|.+. - +..|.-++...+ .-.+.+++.+|+|+|||...
T Consensus 6 ~~~~~di~--g~~~~~~~l~~~i~~~~~~~~~l~~~~l---~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIG--ALEDIREELTMAILAPVRNPDQFKALGL---VTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CC--HHHHHHHHHHHHHTHHHHSHHHHHHTTC---CCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhC--CHHHHHHHHHHHHHHHhhCHHHHHHcCC---CCCCeEEEECCCCCcHHHHH
Confidence 35688876 444555555442 1 112222222211 11234999999999999753
No 132
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.08 E-value=0.63 Score=33.90 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
++-+++++++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 56689999999999975
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.88 E-value=0.59 Score=34.92 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
..+++.+++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999853
No 134
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.74 E-value=0.7 Score=35.92 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.7
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
+.+++.+|+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3499999999999965
No 135
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.63 E-value=2.2 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
..++++.+++|+|||...
T Consensus 55 ~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999763
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.10 E-value=0.85 Score=39.22 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=31.7
Q ss_pred CccchHhhcccCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 64 SSTQFEALKGKVCENTLKAIADM---GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..+|++.+ +|. ...+.|.+. -+.+|--++..-++ -.+.+|..+|+|+|||+..
T Consensus 143 p~v~~~dIg-Gl~-~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVG-GLT-KQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSC-SCH-HHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhC-CHH-HHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 346799887 343 344444442 12233333333322 2478999999999999863
No 137
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.90 E-value=0.72 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.+.++++.+++|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 357899999999999975
No 138
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.90 E-value=0.63 Score=36.97 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.++.+++.+|+|+|||...
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3678999999999999753
No 139
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=81.61 E-value=0.73 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|+.+++.+++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 577899999999999975
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.52 E-value=4.4 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+..+++.+++|+|||...
T Consensus 36 ~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3578999999999999753
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.51 E-value=0.8 Score=33.73 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..+++.+++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999975
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.44 E-value=0.75 Score=34.68 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.0
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|+-+++++++|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 45678899999999999874
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.39 E-value=3.9 Score=34.88 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=20.9
Q ss_pred ccccCCCcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 100 PPLLEGRDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 100 p~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
.-+..|.=++++|++|+|||. |++-+...+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~-lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTA-FALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHH-HHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHH-HHHHHHHHH
Confidence 345567778999999999996 444444433
No 144
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.34 E-value=0.69 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCchh-hHh
Q psy12984 103 LEGRDLVGSAKTGSGKT-LAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKT-laf 122 (178)
..|+-+++.++||+||| ++.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHH
T ss_pred ECCEEEEEECCCCCCHHHHHH
Confidence 45778999999999997 443
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.20 E-value=0.71 Score=34.32 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+++.+++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999753
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.98 E-value=2.1 Score=35.40 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
..+.+++.+++|+|||...
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.97 E-value=0.76 Score=37.95 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+.++++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.92 E-value=0.63 Score=40.36 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=30.8
Q ss_pred CccchHhhcccCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 64 SSTQFEALKGKVCENTLKAIADM---GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..+|++.+ +| ++..+.|.+. -+.+|--++..-+ .-.+.+|..+|+|+|||+..
T Consensus 176 p~v~~~dig-Gl-~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIG-GL-TEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGC-SC-HHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhC-Ch-HHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 345688887 34 3344444331 1222333333322 22478999999999999863
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.90 E-value=2.3 Score=37.61 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCchhhHhHHHHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAVELIY 131 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l~~l~ 131 (178)
+.++++.+.||||||.+.-.-++..+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999875444444343
No 150
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.73 E-value=1.2 Score=47.55 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-Hhhc---cccCCCcEEEEccCCCchhhHhH
Q psy12984 75 VCENTLKAIADMGFTKMTEIQA-RTIP---PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 75 l~~~ll~~l~~~g~~~pt~iQ~-~aip---~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
|...+.+.+.++|+ .|++.+. +++. .+.-.+.+++.+|||||||.+|-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44567777888998 5666332 2222 22345669999999999999875
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.71 E-value=0.92 Score=34.27 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|+-+.+.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999754
No 152
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.60 E-value=0.8 Score=38.27 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=17.9
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|..+++.++||||||..+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 457899999999999999753
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.59 E-value=1.1 Score=36.47 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+..|++.+++|+|||..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 4567899999999999975
No 154
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.49 E-value=0.75 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|+=+++.+|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999753
No 155
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.44 E-value=0.82 Score=33.52 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
++.+++.+++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999975
No 156
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.10 E-value=4.2 Score=33.03 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=18.1
Q ss_pred ccccCCCcEEEEccCCCchhhHh
Q psy12984 100 PPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 100 p~~l~g~dvi~~a~TGsGKTlaf 122 (178)
.-+..|.=++++|++|+|||...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHH
Confidence 34556778999999999999643
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=80.08 E-value=0.72 Score=33.98 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=16.8
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|.-+++.+++|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44677899999999999974
No 158
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.90 E-value=0.67 Score=39.82 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+++.+|||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4556899999999999753
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=79.82 E-value=0.82 Score=32.56 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++++++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 160
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=79.77 E-value=1 Score=32.57 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+..+++.+++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999975
No 161
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.64 E-value=0.54 Score=38.13 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.7
Q ss_pred cccCCCcEEEEccCCCchhhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTla 121 (178)
.+..|.++++.+++|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 345688999999999999964
No 162
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=79.58 E-value=4 Score=35.68 Aligned_cols=51 Identities=8% Similarity=-0.132 Sum_probs=38.1
Q ss_pred CCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
.|..+.+.+-||||||+...- ++. . .+ ...++|+|+..+|.|++..+..++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~---~---~~-~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAE---R---HA-GPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHH---H---SS-SCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHH---H---hC-CCEEEEeCCHHHHHHHHHHHHhhC
Confidence 567788899999999986432 111 1 12 246889999999999999988774
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.42 E-value=0.85 Score=37.06 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+..+++.+++|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.36 E-value=1 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777889999999999753
No 165
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.34 E-value=0.84 Score=34.80 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.7
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
|-|++++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999874
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=79.31 E-value=3.2 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.2
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+++.+++|+|||...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHH
Confidence 446788999999999999643
No 167
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.21 E-value=0.84 Score=37.23 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
+.++++.+++|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 689999999999999754
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.09 E-value=0.93 Score=34.94 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=17.1
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
+.|+-+++.+|+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46888999999999999753
No 169
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.89 E-value=0.99 Score=35.71 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3499999999999965
No 170
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.59 E-value=1 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
|.-+++.+++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999974
No 171
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.54 E-value=0.87 Score=39.36 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=30.2
Q ss_pred CccchHhhcccCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 64 SSTQFEALKGKVCENTLKAIADM---GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..+|++.+ +|. ...+.|.+. -+.+|--++..-+ .-.+.+|..+|+|+|||+..
T Consensus 167 p~v~~~dig-Gl~-~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVG-GLD-MQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSC-SCH-HHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhc-cHH-HHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 346798887 343 333334331 1122222332222 22467999999999999763
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.45 E-value=0.88 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
...+++.+|+|+|||...
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 358999999999999763
No 173
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.32 E-value=1.1 Score=33.24 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.+..+++++++|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999975
No 174
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.04 E-value=3.5 Score=32.21 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchhhHhHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAV 127 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l 127 (178)
|.=+++.+++|+|||.+.+--+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH
Confidence 55678889999999987543333
No 175
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.03 E-value=1.5 Score=33.73 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=22.4
Q ss_pred HHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 94 IQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 94 iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
-|..++..+..|.-+.+.+++|+|||..+
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44555555677888899999999999754
No 176
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.80 E-value=0.86 Score=37.92 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
=+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999653
No 177
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.76 E-value=0.87 Score=38.01 Aligned_cols=16 Identities=25% Similarity=0.050 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
=+++.+|||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999653
No 178
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.59 E-value=0.88 Score=38.19 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
++-+++.+|||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999974
No 179
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=77.50 E-value=2.3 Score=40.86 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=28.8
Q ss_pred EEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHH
Q psy12984 109 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRP 149 (178)
Q Consensus 109 i~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~ 149 (178)
+|.|..|||||.+.+--+...+... ......++|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~--~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA--PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC--TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC--CCCCcEEEEecCcc
Confidence 5788899999998877777766552 23357788999763
No 180
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.43 E-value=1.2 Score=36.68 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.3
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|..+++.++||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
No 181
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=77.42 E-value=0.92 Score=35.80 Aligned_cols=14 Identities=36% Similarity=0.090 Sum_probs=12.3
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
++++++||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 68899999999864
No 182
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.29 E-value=3.4 Score=37.09 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchhhHhHHHHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAVELIY 131 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l~~l~ 131 (178)
+.+++|.+.||||||.+...-+++.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999876555555443
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.07 E-value=1.1 Score=37.61 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.3
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+++.++||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999763
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=77.00 E-value=1 Score=33.13 Aligned_cols=21 Identities=29% Similarity=0.096 Sum_probs=17.2
Q ss_pred cCCCcEEEEccCCCchhhHhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-.|.-+.+.+++|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 356678899999999998755
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.95 E-value=0.98 Score=36.12 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
...+++.+++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999753
No 186
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.63 E-value=1.2 Score=35.94 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
..+.+++.+|+|+|||..
T Consensus 35 ~p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp CCSEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346789999999999975
No 187
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.62 E-value=0.84 Score=39.99 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=30.5
Q ss_pred ccchHhhcccCCHHHHHHHHHCC---CCCCcHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 65 STQFEALKGKVCENTLKAIADMG---FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g---~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
..+|++.+ =-++..+.|.+.= +.+|--++..-+ .-.+.+|..+|+|+|||+.
T Consensus 205 ~vt~~DIg--Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVG--GCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCT--TCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhc--cHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 46688887 3344555555421 122222332222 2357899999999999975
No 188
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.59 E-value=1.4 Score=32.73 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
+=+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44778999999999753
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=76.21 E-value=1.4 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=16.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999753
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=76.09 E-value=1.2 Score=31.84 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++.++.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 191
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=75.80 E-value=4.6 Score=30.63 Aligned_cols=38 Identities=13% Similarity=-0.087 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeec
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKL 147 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Pt 147 (178)
|+=.++.++.|||||.+.+--+.+... .+..++++-|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~-----~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI-----AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----CCCEEEEEEec
Confidence 555677899999999775533333222 23355666565
No 192
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.80 E-value=4.8 Score=30.04 Aligned_cols=19 Identities=37% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
|+=+++.++.|+|||...+
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 5557789999999998764
No 193
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.76 E-value=1.4 Score=36.44 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
...++++.+++|+|||..
T Consensus 71 ~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 457899999999999975
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.65 E-value=1.2 Score=37.37 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+++++|||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34557899999999999763
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.58 E-value=1.6 Score=33.25 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.6
Q ss_pred cccCCCcEEEEccCCCchhhHhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-+-.|.-+.+.+|+|+|||..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 34567889999999999997644
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=75.56 E-value=3.8 Score=34.43 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=20.8
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHHHHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELIY 131 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~ 131 (178)
+..|.-+++.+++|+|||. |++.++..+.
T Consensus 71 l~~G~li~I~G~pGsGKTt-lal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTT-LALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHH-HHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHH-HHHHHHHHHH
Confidence 4457789999999999996 4455554443
No 197
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=75.56 E-value=1.3 Score=31.98 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++++++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 378899999999974
No 198
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.54 E-value=0.96 Score=33.12 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-+++.+++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999964
No 199
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.20 E-value=0.77 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999763
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=74.91 E-value=1.6 Score=32.31 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|+-+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467799999999999975
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.86 E-value=1.9 Score=32.24 Aligned_cols=22 Identities=27% Similarity=0.080 Sum_probs=17.7
Q ss_pred ccCCCcEEEEccCCCchhhHhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
+..|.-+++.+++|+|||....
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHH
Confidence 4457788999999999997543
No 202
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=74.82 E-value=1.6 Score=32.75 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+++.+++|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778999999999999753
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=74.56 E-value=1.6 Score=33.89 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhhHhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
+-.|.-+++.+|+|+|||..+-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4568889999999999998543
No 204
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.39 E-value=1 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.++++.+++|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45699999999999975
No 205
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=74.19 E-value=1.3 Score=32.09 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+++.+++|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3667899999999999753
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.14 E-value=4.2 Score=33.04 Aligned_cols=20 Identities=25% Similarity=-0.004 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|.-+++.+++|+|||...+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHH
Confidence 46788999999999997543
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=73.99 E-value=1.7 Score=32.81 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=16.6
Q ss_pred cccCCCcEEEEccCCCchhhHh
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf 122 (178)
.+..|.-+.+.+|+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999754
No 208
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.78 E-value=1.8 Score=32.19 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+.-|++.++.|||||..
T Consensus 18 ~~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455689999999999964
No 209
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.71 E-value=1.5 Score=32.51 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..+++.+++|+|||..
T Consensus 46 ~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSI 61 (250)
T ss_dssp SEEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3689999999999965
No 210
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=73.28 E-value=1.4 Score=33.82 Aligned_cols=21 Identities=38% Similarity=0.278 Sum_probs=13.2
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 446778889999999999753
No 211
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.26 E-value=1.4 Score=36.55 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=17.3
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCeEEEEEECCCCCCCceEe
Confidence 3467755 778899999999885
No 212
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=73.17 E-value=1.3 Score=37.03 Aligned_cols=15 Identities=40% Similarity=0.226 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-++++++||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 478999999999974
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.91 E-value=1.5 Score=34.80 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999763
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.81 E-value=1.8 Score=32.46 Aligned_cols=23 Identities=30% Similarity=0.108 Sum_probs=18.0
Q ss_pred hccccCCCcEEEEccCCCchhhH
Q psy12984 99 IPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 99 ip~~l~g~dvi~~a~TGsGKTla 121 (178)
+|.+..|.-+.+.+++|||||..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHH
Confidence 34555667788999999999975
No 215
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.77 E-value=1.9 Score=45.32 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=31.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHH-Hhhc---cccCCCcEEEEccCCCchhhHhH
Q psy12984 76 CENTLKAIADMGFTKMTEIQA-RTIP---PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 76 ~~~ll~~l~~~g~~~pt~iQ~-~aip---~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
...+.+.+.+.|+ .+++.+. +++. .+...+.|++.+|||||||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 3456677778888 4666432 2222 23345779999999999999864
No 216
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.67 E-value=1.4 Score=36.63 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++++|||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 217
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.55 E-value=1.8 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+..+++.+++|+|||...
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3678999999999999753
No 218
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.17 E-value=2 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4699999999999965
No 219
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=72.15 E-value=1.6 Score=31.96 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999974
No 220
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.99 E-value=2.4 Score=33.22 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 106 RDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
+.+++.+|.|+|||... ..++..+
T Consensus 59 n~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHh
Confidence 46999999999999754 4555555
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.45 E-value=2.3 Score=32.25 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=18.5
Q ss_pred ccCCCcEEEEccCCCchhhHhHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLV 124 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~l 124 (178)
+..|.-+++.+++|+|||.....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 45678899999999999986543
No 222
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.35 E-value=1.9 Score=35.12 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
.+++.+++|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 223
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=71.34 E-value=1.8 Score=36.37 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=17.4
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCceeee
Confidence 4567865 677899999999875
No 224
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.31 E-value=6.7 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=28.6
Q ss_pred CCCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 62 ILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 62 ~~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
.+...+|+++- -++.+.+.|...=+. .-.+.++++.+|+|+|||...
T Consensus 7 kyrP~~~~~~v--g~~~~~~~l~~~~~~------------~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 7 KYRPKSLNALS--HNEELTNFLKSLSDQ------------PRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TTCCCSGGGCC--SCHHHHHHHHTTTTC------------TTCCCCEEEECSTTSSHHHHH
T ss_pred ccCCCCHHHhc--CCHHHHHHHHHHHhh------------CCCCCeEEEECCCCCCHHHHH
Confidence 34446677774 456666666442100 012235999999999999753
No 225
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.22 E-value=1.9 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
++.+++.+++|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999753
No 226
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.14 E-value=1.7 Score=36.33 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 4567765 677899999999874
No 227
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.53 E-value=12 Score=31.80 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
+..+++.+++|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999753
No 228
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.46 E-value=2 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.8
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+.-+++.+++|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466799999999999964
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=70.41 E-value=1.9 Score=31.95 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-|++.++.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 456789999999999975
No 230
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.38 E-value=1.6 Score=37.58 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.3
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
+++.+|||||||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67899999999964
No 231
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.27 E-value=2.1 Score=35.88 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred hhccccCCCc--EEEEccCCCchhhHh
Q psy12984 98 TIPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 98 aip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.+..++.|.| |++-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556778865 677899999999875
No 232
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=69.97 E-value=8.2 Score=30.24 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=26.7
Q ss_pred CCccchHhhcccCCHHHHHHHHHCCCCCCcHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 63 LSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 63 ~~~~~f~~l~~~l~~~ll~~l~~~g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
+....|+++. -.+..++.|... +.. -...++++.+|+|+|||..
T Consensus 11 ~~p~~~~~~~--g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 11 YRPRTLDEVV--GQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp TSCSSGGGSC--SCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHH
T ss_pred cCCCCHHHHh--CCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHH
Confidence 4445677764 455566555442 110 1123599999999999965
No 233
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=69.86 E-value=2.1 Score=32.16 Aligned_cols=23 Identities=22% Similarity=-0.038 Sum_probs=18.2
Q ss_pred cccCCCcEEEEccCCCchhhHhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-+..|.-+.+.+|+|+|||....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 35567788999999999997543
No 234
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.84 E-value=2 Score=36.61 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=16.8
Q ss_pred ccCCCc--EEEEccCCCchhhHh
Q psy12984 102 LLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~d--vi~~a~TGsGKTlaf 122 (178)
++.|.| |++-++||||||...
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHH
T ss_pred hhcCceeeEeeecCCCCCCCeEe
Confidence 467865 677899999999875
No 235
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.78 E-value=2.3 Score=33.76 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.9
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
.+.|..+++.+++|||||...
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345999999999999999763
No 236
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.72 E-value=2 Score=35.88 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-++++++||+|||..|
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 237
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.68 E-value=1.9 Score=31.44 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-|++.+++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 44588999999999865
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=69.64 E-value=2.1 Score=31.88 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
.+-+++++++|||||..
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34689999999999975
No 239
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.64 E-value=1.8 Score=36.35 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=17.9
Q ss_pred ccccCCCc--EEEEccCCCchhhHh
Q psy12984 100 PPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 100 p~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
..++.|.| |++-++||||||...
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 34567865 577899999999886
No 240
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.53 E-value=2.1 Score=35.83 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred hhccccCCCc--EEEEccCCCchhhHh
Q psy12984 98 TIPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 98 aip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.+..++.|.| |++-++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4566788875 577899999999876
No 241
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.25 E-value=2.1 Score=34.49 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.+.-+++++++|||||..
T Consensus 32 ~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355689999999999875
No 242
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.23 E-value=2.2 Score=32.66 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhh
Q psy12984 103 LEGRDLVGSAKTGSGKTL 120 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTl 120 (178)
..|+-+++++++|+|||.
T Consensus 14 v~G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSE 31 (181)
T ss_dssp ETTEEEEEEESSSSSHHH
T ss_pred ECCEEEEEEcCCCCCHHH
Confidence 468899999999999994
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.14 E-value=2.2 Score=32.16 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=20.5
Q ss_pred cHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 92 TEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 92 t~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
++.++.. ..+..|.-+++.+++|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 3444443 3345677899999999999865
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=69.13 E-value=2.2 Score=31.31 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
|.-+++.+++|+|||...
T Consensus 2 g~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 344678999999999753
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.06 E-value=2.8 Score=33.31 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.7
Q ss_pred cccCCCcEEEEccCCCchhhHhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-+..|.-+++.+++|+|||....
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHH
Confidence 45568889999999999997543
No 246
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=68.99 E-value=2.8 Score=37.42 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
++++.+++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999975
No 247
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.76 E-value=2.2 Score=35.88 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=17.5
Q ss_pred ccccCCCc--EEEEccCCCchhhHh
Q psy12984 100 PPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 100 p~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
..++.|.| |++-++||||||...
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCceEEEEECCCCCCCceEe
Confidence 34567865 577789999999875
No 248
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.75 E-value=2.1 Score=31.98 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+++.+++|||||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4577889999999999975
No 249
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.53 E-value=2.2 Score=31.06 Aligned_cols=16 Identities=25% Similarity=0.013 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-.++.+++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578899999999764
No 250
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=68.37 E-value=2.5 Score=36.92 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
..+.+++.+++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3568999999999999853
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.36 E-value=2.2 Score=32.18 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
-.|.-+.+.+++|||||..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CSCEEEEEECCTTSCTHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466788899999999964
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.24 E-value=2.7 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-|++.++.|||||..
T Consensus 8 ~~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp BCSCEEEEEESTTSSHHHH
T ss_pred hcCCEEEEEcCCCCCHHHH
Confidence 4577899999999999975
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.05 E-value=14 Score=30.70 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=17.9
Q ss_pred cccCCCcEEEEccCCCchhhHhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-+..|.=+++.|++|+|||...+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 34556778999999999997543
No 254
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=68.02 E-value=2.5 Score=30.54 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=12.1
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
.++.+++|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999976
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=68.02 E-value=2.1 Score=31.16 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-|++.++.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=67.96 E-value=3.1 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.6
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|.-+.+.+|+|||||..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34678888999999999974
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=67.95 E-value=2.8 Score=33.11 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=19.4
Q ss_pred ccccCCCcEEEEccCCCchhhHhH
Q psy12984 100 PPLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 100 p~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
+-+..|.-+++.+++|+|||....
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHH
Confidence 445678889999999999997644
No 258
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.47 E-value=3.8 Score=31.31 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-.+++++.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999953
No 259
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.35 E-value=6.7 Score=33.63 Aligned_cols=28 Identities=21% Similarity=0.075 Sum_probs=20.0
Q ss_pred cccCCCcEEEEccCCCchhhHhHHHHHH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFLVPAVE 128 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~lp~l~ 128 (178)
-+..|.=+++.|++|+|||...+--+.+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 3556777999999999999854333333
No 260
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=67.31 E-value=3 Score=30.39 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.-|++++++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999975
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.27 E-value=2.6 Score=32.34 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.+..+++.+++|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456799999999999964
No 262
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=67.01 E-value=1.7 Score=36.61 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=17.7
Q ss_pred ccccCCCc--EEEEccCCCchhhHh
Q psy12984 100 PPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 100 p~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
..++.|.| |++-++||||||...
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 44577865 677889999999874
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=66.99 E-value=2.6 Score=32.08 Aligned_cols=17 Identities=29% Similarity=0.118 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+++.+++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999974
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.95 E-value=2.6 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+..+++.++.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56789999999999964
No 265
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=66.75 E-value=2.4 Score=35.29 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.6
Q ss_pred EEEEccCCCchhhHh
Q psy12984 108 LVGSAKTGSGKTLAF 122 (178)
Q Consensus 108 vi~~a~TGsGKTlaf 122 (178)
.++.++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567999999999863
No 266
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=66.63 E-value=2.5 Score=30.83 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999975
No 267
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=66.63 E-value=2.7 Score=31.78 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+..+++.+++|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999964
No 268
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.62 E-value=6.7 Score=32.21 Aligned_cols=20 Identities=15% Similarity=-0.137 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|.-+++.+++|+|||...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 269
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.37 E-value=2 Score=36.70 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=19.2
Q ss_pred hhccccCCCc--EEEEccCCCchhhHh
Q psy12984 98 TIPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 98 aip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.+..++.|.| |++-++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 3445678865 577789999999886
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.26 E-value=2.7 Score=31.51 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999965
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=66.18 E-value=3 Score=30.95 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-|++.++.|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCCEEEEEESTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3567799999999999975
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.94 E-value=3.3 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
.+.+.+++|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=65.62 E-value=8.6 Score=31.85 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=18.2
Q ss_pred cccCCCcEEEEccCCCchhhHhH
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
-+..|+-+++.+++|+|||...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHH
Confidence 34567889999999999997543
No 274
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.54 E-value=2.9 Score=35.22 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.9
Q ss_pred CCCc--EEEEccCCCchhhHh
Q psy12984 104 EGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~d--vi~~a~TGsGKTlaf 122 (178)
.|.+ |++-++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4765 689999999999875
No 275
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.45 E-value=2.1 Score=36.85 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=17.1
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEe
Confidence 3467754 677889999999875
No 276
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=65.45 E-value=2.2 Score=35.87 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=17.2
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4567754 677899999999875
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=65.40 E-value=9.6 Score=32.46 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.7
Q ss_pred ccccCCCcEEEEccCCCchhhHhH
Q psy12984 100 PPLLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 100 p~~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
.-+..|.-+++.|++|+|||...+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHH
Confidence 345567889999999999997543
No 278
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.32 E-value=3 Score=29.91 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.7
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
+-+++.+++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 279
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=65.32 E-value=3.2 Score=30.05 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 688999999999864
No 280
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.24 E-value=3 Score=31.32 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999965
No 281
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.10 E-value=2.7 Score=36.45 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=31.2
Q ss_pred CccchHhhcccCCHHHHHHHHHC---CCCCCcHHHHHhhccccCCCcEEEEccCCCchhhH
Q psy12984 64 SSTQFEALKGKVCENTLKAIADM---GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 64 ~~~~f~~l~~~l~~~ll~~l~~~---g~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTla 121 (178)
+..+|++.+ +|.. ..+.|.+. -+.+|--++..-++ -.+.+|..+|+|+|||+.
T Consensus 177 p~v~~~DIg-Gld~-~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIG-GLES-QIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTC-SCHH-HHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecC-cHHH-HHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 446799987 3433 33334331 12233334433332 247899999999999985
No 282
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.10 E-value=2.9 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.+++.+|+|+|||...
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 368999999999999763
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=65.06 E-value=2.8 Score=30.37 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
+-+++.+++|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999975
No 284
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.02 E-value=2.1 Score=36.18 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.2
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3467754 677899999999885
No 285
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.00 E-value=3 Score=35.93 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
...++++.+++|+|||...
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3468999999999999864
No 286
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=65.00 E-value=9.4 Score=31.80 Aligned_cols=22 Identities=36% Similarity=0.225 Sum_probs=17.7
Q ss_pred ccCCCcEEEEccCCCchhhHhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~ 123 (178)
+..|+-+++.+++|+|||...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHH
Confidence 3457889999999999998543
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=64.77 E-value=3.1 Score=31.05 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
|.-+.+.+++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445778999999999753
No 288
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.66 E-value=3.4 Score=35.77 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999753
No 289
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.53 E-value=3.1 Score=30.47 Aligned_cols=17 Identities=24% Similarity=0.179 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+++.+++|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45689999999999964
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=64.53 E-value=4 Score=31.82 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|||||..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 346788889999999999743
No 291
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=64.42 E-value=2.2 Score=35.85 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3466754 677899999999875
No 292
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.41 E-value=3.7 Score=33.47 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999753
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=64.31 E-value=2.9 Score=30.65 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-+++.+..|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999975
No 294
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=64.15 E-value=3.4 Score=32.64 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
++++.+++|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999975
No 295
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.74 E-value=2.3 Score=36.57 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=18.5
Q ss_pred hccccCCCc--EEEEccCCCchhhHh
Q psy12984 99 IPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 99 ip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
+..++.|.| |++-++||||||...
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEe
Confidence 445677865 677789999999875
No 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.66 E-value=3.1 Score=34.84 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 89 ~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 89 KLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHTCCEEEEEESSTTSSHHHHH
T ss_pred HhhCCCceEEEEecCCCCCCCeEE
Confidence 3456754 677899999999975
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.65 E-value=4.1 Score=33.42 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+-.|.-+.+.+|+|||||...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 456888999999999999753
No 298
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=63.62 E-value=2.2 Score=36.18 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=16.9
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 4567754 677889999999874
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=63.60 E-value=3.1 Score=32.19 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+|+|+|||.-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677788999999999974
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=63.50 E-value=3.1 Score=35.80 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
..+++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999754
No 301
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.98 E-value=3.4 Score=30.59 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
+-|++.++.|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588899999999965
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=62.95 E-value=3.2 Score=30.76 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+.+.+++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999975
No 303
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=62.88 E-value=3 Score=35.31 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=19.2
Q ss_pred hhccccCCCc--EEEEccCCCchhhHh
Q psy12984 98 TIPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 98 aip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.+..++.|.| |++-++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3456678865 677789999999875
No 304
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=62.81 E-value=7.3 Score=31.05 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.3
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-+++.+|+|+|||...
T Consensus 50 ~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 50 IILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEEECSSTTSSHHHHH
T ss_pred EEEeeCcCCCCHHHHH
Confidence 3566777999999763
No 305
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=62.81 E-value=3.5 Score=36.31 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999753
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=62.72 E-value=3.1 Score=30.49 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++.+++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378899999999964
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.62 E-value=4.7 Score=30.40 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
|.-+.+.+++|+|||..+-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4457889999999997643
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.53 E-value=3.2 Score=36.93 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.9
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|..+++.+|+|+|||...
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 456789999999999999764
No 309
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.39 E-value=3.4 Score=34.36 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=18.4
Q ss_pred hccccCCCc--EEEEccCCCchhhHh
Q psy12984 99 IPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 99 ip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
+..++.|.| |++-++||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 73 VTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 344567865 677899999999875
No 310
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=62.34 E-value=3.7 Score=29.26 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999975
No 311
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.23 E-value=3.7 Score=29.43 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.++++.+..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4789999999999975
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=62.18 E-value=4.6 Score=31.95 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|||||..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 346888899999999999854
No 313
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=62.09 E-value=3.5 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCchh-hHhH
Q psy12984 103 LEGRDLVGSAKTGSGKT-LAFL 123 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKT-laf~ 123 (178)
..|+-+++++++|+||+ +|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~ 166 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALD 166 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHH
Confidence 35788999999999995 5543
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=62.03 E-value=4.2 Score=30.55 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+.+.+++|||||..
T Consensus 5 ~~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 5 APVITIDGPSGAGKGTL 21 (227)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688899999999865
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=61.89 E-value=3 Score=32.77 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-|++++++|||||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 34588999999999975
No 316
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=61.73 E-value=4.7 Score=31.22 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46888889999999999743
No 317
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.71 E-value=5.1 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.3
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|+|||..+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346888889999999999854
No 318
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.70 E-value=3.1 Score=30.08 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=10.6
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+++.+..|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56688999999999965
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=61.67 E-value=4.7 Score=31.69 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+++|||||..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46788889999999999854
No 320
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=61.66 E-value=3.4 Score=36.02 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
+.+++.+|+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999763
No 321
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=61.66 E-value=2.6 Score=30.49 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=14.9
Q ss_pred ccccCCCcEEEEccCCCchhhH
Q psy12984 100 PPLLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 100 p~~l~g~dvi~~a~TGsGKTla 121 (178)
+.-...-.|++.+.+|+|||..
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp -----CEEEEEEEETTSSHHHH
T ss_pred CCCCceeEEEEECCCCCCHHHH
Confidence 3334456799999999999974
No 322
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=61.65 E-value=7.2 Score=37.61 Aligned_cols=53 Identities=8% Similarity=-0.129 Sum_probs=38.5
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHHHHHHHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYLVACNVF 162 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~~~~~l~ 162 (178)
+..|....+.+-||||||+... -++. . ..+ ..++|+|+..+|.|++..+..++
T Consensus 14 ~~~~~~~~l~G~~gs~ka~~~a-~l~~---~---~~~-p~lvv~~~~~~A~~l~~el~~f~ 66 (1151)
T 2eyq_A 14 VKAGEQRLLGELTGAACATLVA-EIAE---R---HAG-PVVLIAPDMQNALRLHDEISQFT 66 (1151)
T ss_dssp CSTTCBCCBCCCCTTHHHHHHH-HHHH---S---SSS-EEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCCeEEEeCCchHHHHHHHH-HHHH---h---hCC-CEEEEeCCHHHHHHHHHHHHhhc
Confidence 5556556778899999988654 2222 1 122 46889999999999999988774
No 323
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=61.50 E-value=3.8 Score=31.62 Aligned_cols=17 Identities=29% Similarity=0.100 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+++.+++|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999964
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=61.45 E-value=3.8 Score=30.48 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+.+.++.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999975
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=61.18 E-value=3.9 Score=29.70 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=12.3
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999964
No 326
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.01 E-value=3.5 Score=34.88 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=18.1
Q ss_pred hccccCCCc--EEEEccCCCchhhHh
Q psy12984 99 IPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 99 ip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
+..++.|.| |++-++||||||...
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 344567865 677799999999875
No 327
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.88 E-value=3.7 Score=34.62 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCeeEEEEeCCCCCCCceEe
Confidence 3467754 677899999999875
No 328
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.78 E-value=3.8 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
...++++.+++|+|||...
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4568999999999999853
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=60.72 E-value=4.3 Score=32.00 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|+|||.-+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHH
Confidence 346778889999999999853
No 330
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.64 E-value=3.6 Score=31.11 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+..+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999964
No 331
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.57 E-value=3.6 Score=34.61 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=17.4
Q ss_pred ccccCCCc--EEEEccCCCchhhHh
Q psy12984 100 PPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 100 p~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
..++.|.| |++-++||||||...
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34567764 677899999999864
No 332
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.48 E-value=7.6 Score=32.96 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
|.-+.+.+++|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4678899999999997654
No 333
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=60.28 E-value=3.7 Score=38.03 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..++.+++.+++|+|||..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCEEEECSCTTSSHHHH
T ss_pred CCCCeEEEECcCCCCHHHH
Confidence 4578899999999999975
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=60.02 E-value=4.4 Score=31.63 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|||||..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346778889999999999854
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=59.97 E-value=4.2 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.7
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
=.++.+++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3467899999999763
No 336
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=59.94 E-value=3.8 Score=34.33 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.1
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 72 SAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHcCCccceeeecCCCCCCCeEE
Confidence 3466754 677899999999886
No 337
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.80 E-value=3.9 Score=34.54 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=16.9
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3566754 677899999999874
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=59.51 E-value=5.3 Score=31.80 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+|+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4677888999999999984
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=59.36 E-value=4.1 Score=30.45 Aligned_cols=19 Identities=26% Similarity=-0.025 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+++|||||...
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455788999999999753
No 340
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=59.24 E-value=5.3 Score=32.09 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|||||..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45777889999999999843
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.07 E-value=4.2 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=59.05 E-value=5.7 Score=31.51 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+++|+|||.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46778889999999999854
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.95 E-value=5.6 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||..+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778889999999999853
No 344
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=58.95 E-value=4.1 Score=34.68 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=17.2
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.+ |++-++||||||...
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHhcCCceEEEEecCCCCCCCeEe
Confidence 4567754 677899999999885
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=58.90 E-value=4.5 Score=29.52 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.2
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
|++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999975
No 346
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=58.75 E-value=5.6 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=17.2
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|+|||.-+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346778889999999999854
No 347
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=58.66 E-value=3.4 Score=32.24 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+.-+++++++|||||..
T Consensus 30 ~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SSCEEEEEESCGGGTTHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3456789999999999975
No 348
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=58.62 E-value=4 Score=29.88 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.7
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.++.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788899999999974
No 349
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.46 E-value=5.2 Score=32.43 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
++++.+|+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999653
No 350
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.27 E-value=4.6 Score=36.69 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.+.++++.+++|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 4678999999999999753
No 351
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.26 E-value=6 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46777889999999999743
No 352
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.25 E-value=5.5 Score=37.14 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=31.3
Q ss_pred ccchHhhcccCCHHHHHHHHHCC-CCCCcHHHHHhhccccCCCcEEEEccCCCchhhHh
Q psy12984 65 STQFEALKGKVCENTLKAIADMG-FTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 65 ~~~f~~l~~~l~~~ll~~l~~~g-~~~pt~iQ~~aip~~l~g~dvi~~a~TGsGKTlaf 122 (178)
..+|++++ .-++..+.|.+.= |..-.|-+...+ -+...+.+|..+|+|+|||+..
T Consensus 473 ~v~w~dig--gl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIG--GLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCC--SCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhC--CHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 35688876 5566777776531 211111111111 1122467999999999999753
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=58.20 E-value=4.2 Score=30.36 Aligned_cols=15 Identities=40% Similarity=0.319 Sum_probs=12.4
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++++++|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999874
No 354
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=58.15 E-value=6 Score=31.54 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.2
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|+|||..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 346788889999999999743
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=58.10 E-value=6 Score=31.42 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+++|+|||..+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778889999999999854
No 356
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=58.04 E-value=4.1 Score=37.12 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=18.8
Q ss_pred hhccccCCCc--EEEEccCCCchhhHh
Q psy12984 98 TIPPLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 98 aip~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.+..++.|.| |++-++||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3455677865 667789999999874
No 357
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.01 E-value=5.5 Score=31.34 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
++++.+++|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 599999999999965
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=57.97 E-value=4.3 Score=30.39 Aligned_cols=14 Identities=29% Similarity=0.064 Sum_probs=11.8
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
+.+.+++|||||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999974
No 359
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.83 E-value=5.1 Score=32.44 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|+-+++.+++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778899999999997543
No 360
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=57.75 E-value=6 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|+|||.-+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 346778889999999999853
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.66 E-value=3.3 Score=43.54 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.5
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|+.++.++|||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44689999999999999975
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=57.56 E-value=4.7 Score=30.32 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=57.36 E-value=6.1 Score=30.81 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677889999999999653
No 364
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=57.22 E-value=4.7 Score=32.98 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=12.9
Q ss_pred EEEEccCCCchhhHhH
Q psy12984 108 LVGSAKTGSGKTLAFL 123 (178)
Q Consensus 108 vi~~a~TGsGKTlaf~ 123 (178)
.++.+|+|+|||..+-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3578999999998643
No 365
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=57.22 E-value=4.7 Score=32.60 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++.+++|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=57.03 E-value=4.9 Score=30.16 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.-+.+.++.|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999975
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=57.00 E-value=4.6 Score=31.33 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.+..|++.+++|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355799999999999964
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.97 E-value=6.5 Score=31.13 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 46777889999999999853
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.76 E-value=6.1 Score=32.14 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+++|+|||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4667888999999999753
No 370
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=56.75 E-value=6.3 Score=31.06 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46777889999999999853
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=56.68 E-value=4.8 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.0
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
-.|.-+.+.+++|||||..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 46888999999999999853
No 372
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.57 E-value=4.7 Score=34.88 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=17.3
Q ss_pred cccCCCc--EEEEccCCCchhhHh
Q psy12984 101 PLLEGRD--LVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~d--vi~~a~TGsGKTlaf 122 (178)
.++.|.| |++-++||||||...
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3467764 677899999999876
No 373
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=56.55 E-value=8.5 Score=33.46 Aligned_cols=32 Identities=31% Similarity=0.271 Sum_probs=23.0
Q ss_pred cccCCCcEEEEccCCCchhhHhHHHHHHHHHh
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAFLVPAVELIYN 132 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf~lp~l~~l~~ 132 (178)
-+..|.-+++.+++|||||.....-++..+..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 45578899999999999998655433444443
No 374
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=56.01 E-value=16 Score=29.11 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHhHHHHHH
Q psy12984 103 LEGRDLVGSAKTGSGKTLAFLVPAVE 128 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf~lp~l~ 128 (178)
..|..+++.+.+|+||| .|.+-.+.
T Consensus 19 ~~gs~~li~g~p~~~~~-~l~~qfl~ 43 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGK-DILFYILS 43 (260)
T ss_dssp TTCEEEEEECSGGGCHH-HHHHHHHH
T ss_pred CCCcEEEEEeCCCccHH-HHHHHHHH
Confidence 35678888877777777 55544433
No 375
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=55.85 E-value=6.9 Score=31.13 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||.-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHH
Confidence 45777889999999999853
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=55.30 E-value=6.8 Score=31.40 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||.-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46777889999999999853
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=54.97 E-value=4.9 Score=32.47 Aligned_cols=16 Identities=31% Similarity=0.330 Sum_probs=13.0
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.=+.+++++|||||..
T Consensus 32 ~ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467889999999875
No 378
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=54.93 E-value=5.4 Score=31.48 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++.+++|||||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 379
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.91 E-value=5 Score=30.54 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=54.88 E-value=2.6 Score=31.41 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.1
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
|++.+++|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999974
No 381
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.40 E-value=5.4 Score=34.98 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
+.+++.+|+|+|||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999764
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=54.28 E-value=6.3 Score=31.99 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchhhHhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf~ 123 (178)
..|.-+.+.+++|+|||....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 356678899999999998643
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=54.11 E-value=3.5 Score=30.65 Aligned_cols=16 Identities=31% Similarity=0.187 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567889999999754
No 384
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=54.09 E-value=6.2 Score=33.28 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=16.6
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+-.|+-+++.+|+|+|||..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34578899999999999874
No 385
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=54.02 E-value=5.2 Score=36.45 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
.+++.+|||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999763
No 386
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=53.58 E-value=21 Score=27.34 Aligned_cols=38 Identities=13% Similarity=-0.080 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeec
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKL 147 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Pt 147 (178)
|+=.++.++.|||||.-.+-.+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-----~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEccc
Confidence 5567889999999996554443333332 3466777776
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.57 E-value=4.3 Score=43.38 Aligned_cols=19 Identities=47% Similarity=0.611 Sum_probs=17.0
Q ss_pred ccCCCcEEEEccCCCchhh
Q psy12984 102 LLEGRDLVGSAKTGSGKTL 120 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTl 120 (178)
+..|+.|++++|||+|||.
T Consensus 1301 l~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHH
T ss_pred HHCCCcEEEECCCCCCHHH
Confidence 4578999999999999995
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.48 E-value=5.7 Score=30.64 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+++|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445778899999999764
No 389
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=53.45 E-value=5.9 Score=32.70 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchh-hHhH
Q psy12984 104 EGRDLVGSAKTGSGKT-LAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKT-laf~ 123 (178)
.|+-+++.+++|+||+ ++..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~ 163 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALE 163 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHH
Confidence 4789999999999995 5543
No 390
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=53.15 E-value=5.9 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.9
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|..+.+.+++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4566799999999999964
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=53.01 E-value=6.2 Score=30.57 Aligned_cols=15 Identities=33% Similarity=0.186 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-|.+.++.|||||..
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 392
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=52.82 E-value=7.8 Score=31.31 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+++|+|||..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46788889999999999854
No 393
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=52.72 E-value=5.2 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-+++.+|.|+|||...
T Consensus 26 a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 26 ALLIQALPGMGDDALI 41 (334)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred eEEEECCCCchHHHHH
Confidence 4899999999999753
No 394
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=52.54 E-value=5.7 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
++++.+|||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999763
No 395
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=52.18 E-value=23 Score=27.49 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=23.5
Q ss_pred CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHH
Q psy12984 105 GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRP 149 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~ 149 (178)
|.=.+++++-|||||.+.+--+..... .+.+++++-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-----~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-----AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-----TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----CCCEEEEEEeccC
Confidence 444456788899999875544443332 2346677766643
No 396
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=51.83 E-value=8.4 Score=30.96 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|.-+++.+++|+|||...+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999997543
No 397
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.81 E-value=6.8 Score=29.55 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+.+++..|||||..
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999975
No 398
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=51.79 E-value=6.9 Score=28.76 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.7
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+.+.++.|||||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999965
No 399
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=51.71 E-value=8.2 Score=30.67 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
|.-+.+.+++|+|||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 778889999999999854
No 400
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=51.56 E-value=5.5 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=15.4
Q ss_pred CCcHHHHHhhccccC-CCcEEEEccCCCchhhH
Q psy12984 90 KMTEIQARTIPPLLE-GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~-g~dvi~~a~TGsGKTla 121 (178)
++++.|....+.... ...|++.+.+|+|||..
T Consensus 6 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 6 HHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp -------------CCEEEEEEEECSTTSSHHHH
T ss_pred ccccccccccccCCCCccEEEEECCCCCCHHHH
Confidence 456666666665543 35799999999999964
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=51.45 E-value=6.5 Score=27.21 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+++|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 402
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=51.30 E-value=6.6 Score=30.02 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=11.9
Q ss_pred cEEEEccCCCchhh
Q psy12984 107 DLVGSAKTGSGKTL 120 (178)
Q Consensus 107 dvi~~a~TGsGKTl 120 (178)
.+++.+|+||||+.
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999974
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=51.27 E-value=5.8 Score=30.34 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.3
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+++|||||..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCCEEEEEECSTTSCHHHH
T ss_pred CCceEEEEECCCCCCHHHH
Confidence 3466688899999999973
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=50.97 E-value=4.9 Score=29.10 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..|++.+.+|+|||..
T Consensus 21 ~ki~v~G~~~~GKSsl 36 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCL 36 (189)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4789999999999964
No 405
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=50.75 E-value=5.2 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
-.|++.+.+|+|||..
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4799999999999974
No 406
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=50.68 E-value=8.4 Score=28.73 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
+.-+.+.+++|||||..
T Consensus 3 ~~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 3 AINIALDGPAAAGKSTI 19 (219)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999976
No 407
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.60 E-value=23 Score=30.37 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=17.9
Q ss_pred cccCCCcEEEEccCCCchhhHh
Q psy12984 101 PLLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 101 ~~l~g~dvi~~a~TGsGKTlaf 122 (178)
-+..|.=+++.+++|+|||...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~la 259 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFV 259 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHH
Confidence 3556778999999999999844
No 408
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.59 E-value=18 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=20.1
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
+-.|.-+++.+++|+|||. +++.++..+
T Consensus 58 i~~G~i~~I~GppGsGKST-Lal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTT-LALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHH-HHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHH-HHHHHHHHH
Confidence 4456778999999999996 444444444
No 409
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=50.33 E-value=6.6 Score=27.06 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=50.01 E-value=6.9 Score=31.15 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-|.++++.|||||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488899999999965
No 411
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=49.91 E-value=7.1 Score=27.15 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+++|+|||..
T Consensus 7 ~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 578999999999974
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=49.46 E-value=10 Score=28.90 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999763
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=49.41 E-value=17 Score=37.43 Aligned_cols=27 Identities=30% Similarity=0.134 Sum_probs=20.1
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVE 128 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~ 128 (178)
+..|+.+++.+|+|+|||....--+.+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334789999999999999865433433
No 414
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.38 E-value=5.3 Score=32.67 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.9
Q ss_pred CCcEEE--EccCCCchhhHh
Q psy12984 105 GRDLVG--SAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~--~a~TGsGKTlaf 122 (178)
+..+++ .+++|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 457888 999999999753
No 415
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.35 E-value=7.2 Score=30.88 Aligned_cols=17 Identities=12% Similarity=-0.207 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
|+.+++.++.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 47899999999999974
No 416
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=49.28 E-value=6.2 Score=36.55 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
.+++.+|||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=49.25 E-value=6.7 Score=30.24 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+++.++.|||||..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCCEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHH
Confidence 3577899999999999974
No 418
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=49.22 E-value=22 Score=29.64 Aligned_cols=19 Identities=26% Similarity=0.039 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.| -+++.+++|+|||...+
T Consensus 28 ~G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHH
Confidence 45 48899999999997533
No 419
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=49.13 E-value=7.5 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.9
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|.-+.+.+|+|||||..
T Consensus 364 i~~G~~~~ivG~sGsGKSTl 383 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTL 383 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCChHHHH
Confidence 34688899999999999974
No 420
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=49.07 E-value=7.1 Score=31.82 Aligned_cols=21 Identities=10% Similarity=-0.145 Sum_probs=16.2
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+-.|.-+.+.+++|||||...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 345666788999999999753
No 421
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.70 E-value=7.1 Score=36.40 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHh
Q psy12984 105 GRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf 122 (178)
.+.||+.+|+|+|||+..
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 378999999999999753
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=48.38 E-value=7.8 Score=30.02 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.5
Q ss_pred ccCCCcEEEEccCCCchhh
Q psy12984 102 LLEGRDLVGSAKTGSGKTL 120 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTl 120 (178)
+...+=|++.+|+||||+.
T Consensus 26 ~~k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp TTSCEEEEEECCTTCCHHH
T ss_pred ccCCcEEEEECCCCCCHHH
Confidence 3345567889999999965
No 423
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=48.29 E-value=5.2 Score=28.84 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
-.|++.+.+|+|||..
T Consensus 22 ~ki~vvG~~~~GKSsl 37 (190)
T 3con_A 22 YKLVVVGAGGVGKSAL 37 (190)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4689999999999964
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=48.18 E-value=7.5 Score=30.92 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+.+.+++|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999965
No 425
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=48.03 E-value=7.6 Score=26.97 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 426
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.00 E-value=7 Score=32.59 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.9
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|+-+++.+++|+|||..
T Consensus 120 i~~gsviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPL 139 (331)
T ss_dssp EEESEEEEEECSCSSSHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHH
Confidence 33456789999999999964
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.96 E-value=7.4 Score=31.54 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=12.7
Q ss_pred EEEEccCCCchhhHh
Q psy12984 108 LVGSAKTGSGKTLAF 122 (178)
Q Consensus 108 vi~~a~TGsGKTlaf 122 (178)
+++.++.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 578999999999853
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.93 E-value=27 Score=27.42 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhhHhHHHH
Q psy12984 107 DLVGSAKTGSGKTLAFLVPA 126 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf~lp~ 126 (178)
++++.++.|+|||...+--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68899999999998754333
No 429
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=47.75 E-value=7.9 Score=27.28 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 10 ~i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 10 KVIILGDSGVGKTSL 24 (182)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 688999999999964
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=47.73 E-value=5.9 Score=31.88 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=9.6
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
=|.+++++|||||..
T Consensus 7 iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 7 IISVTGSSGAGTSTV 21 (290)
T ss_dssp EEEEESCC---CCTH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999965
No 431
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=47.63 E-value=7.7 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 588999999999964
No 432
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.17 E-value=9.2 Score=32.00 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|.-+.+.+++|+|||....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 46678899999999998643
No 433
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=47.06 E-value=9.2 Score=27.53 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
...|++.+++|+|||..
T Consensus 48 ~~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35789999999999964
No 434
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=46.98 E-value=8.1 Score=26.69 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 6 ~i~v~G~~~~GKssl 20 (168)
T 1u8z_A 6 KVIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 435
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=46.64 E-value=7.9 Score=31.90 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
=+.+.+++|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999753
No 436
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.63 E-value=8.1 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-.++.+++|+|||..
T Consensus 26 ~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 26 VTAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEEECCTTTCSTHH
T ss_pred cEEEECCCCCcHHHH
Confidence 466789999999975
No 437
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=46.44 E-value=9.4 Score=28.20 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..+++.+++|+|||..
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4789999999999965
No 438
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=46.44 E-value=7.7 Score=30.76 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..+++.++.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5789999999999974
No 439
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.42 E-value=8.1 Score=35.78 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
..++++.+++|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 45899999999999975
No 440
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=46.37 E-value=8 Score=29.24 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.1
Q ss_pred EEEEccCCCchhhH
Q psy12984 108 LVGSAKTGSGKTLA 121 (178)
Q Consensus 108 vi~~a~TGsGKTla 121 (178)
++|.+++|||||..
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999963
No 441
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=46.35 E-value=13 Score=34.08 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHhhcccc---CCCcEEEEccCCCchhhH--hHHHHHHHH
Q psy12984 93 EIQARTIPPLL---EGRDLVGSAKTGSGKTLA--FLVPAVELI 130 (178)
Q Consensus 93 ~iQ~~aip~~l---~g~dvi~~a~TGsGKTla--f~lp~l~~l 130 (178)
.+=..|+..++ ....||+++.+|+|||.+ +++.-|..+
T Consensus 79 aiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~ 121 (697)
T 1lkx_A 79 ALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFV 121 (697)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhh
Confidence 34444554443 245799999999999988 444444433
No 442
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=46.32 E-value=8.2 Score=26.85 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1g16_A 5 KILLIGDSGVGKSCL 19 (170)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 578999999999964
No 443
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=46.28 E-value=8.7 Score=26.49 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 5 ~i~v~G~~~~GKSsl 19 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 444
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=46.00 E-value=11 Score=31.85 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.5
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|+|||..+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 346888999999999999854
No 445
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=45.79 E-value=11 Score=29.44 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhhHh
Q psy12984 106 RDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 106 ~dvi~~a~TGsGKTlaf 122 (178)
.-+.+.+|+|+|||.-+
T Consensus 25 e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44668899999999854
No 446
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=45.39 E-value=37 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.053 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
++-+++.+++|+|||....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567888999999997643
No 447
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=45.37 E-value=9.2 Score=26.50 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+.+|+|||..
T Consensus 5 ki~v~G~~~~GKssl 19 (167)
T 1c1y_A 5 KLVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 448
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=45.30 E-value=8.8 Score=31.26 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.++-+++.+++|+|||...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3556788999999999653
No 449
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=45.18 E-value=9.2 Score=26.56 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (172)
T 2erx_A 5 RVAVFGAGGVGKSSL 19 (172)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999963
No 450
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=44.96 E-value=9 Score=26.98 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 9 ~i~v~G~~~~GKSsl 23 (177)
T 1wms_A 9 KVILLGDGGVGKSSL 23 (177)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 451
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=44.74 E-value=12 Score=31.33 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+|+|+|||..
T Consensus 28 ~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4577788899999999974
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=44.66 E-value=10 Score=27.66 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.+++.+++|+|||..
T Consensus 7 kv~lvG~~g~GKSTL 21 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 478899999999964
No 453
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=44.55 E-value=9.8 Score=31.39 Aligned_cols=20 Identities=25% Similarity=-0.017 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhhHhH
Q psy12984 104 EGRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf~ 123 (178)
.|.-+.+.+++|||||....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999997644
No 454
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=44.39 E-value=10 Score=30.53 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-+.+.+++|||||...
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4455778899999999753
No 455
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=44.22 E-value=9 Score=27.38 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..|++.+.+|+|||..
T Consensus 24 ~~i~v~G~~~~GKSsl 39 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSL 39 (195)
T ss_dssp CEEEEEEBTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999963
No 456
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.14 E-value=9.3 Score=31.44 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
-.|.-+.+.+++|+|||...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667889999999999753
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=44.13 E-value=9.8 Score=32.13 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.4
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
.=|++++++|||||..
T Consensus 259 ~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTF 274 (416)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4478899999999965
No 458
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=44.08 E-value=10 Score=33.66 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|||||...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999743
No 459
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=44.04 E-value=8.8 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
+.|.-|++.++.|||||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 35777899999999999753
No 460
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=43.79 E-value=32 Score=29.65 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
+.-+++++++|+|||....
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 3567889999999998643
No 461
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=43.64 E-value=23 Score=36.49 Aligned_cols=29 Identities=28% Similarity=0.090 Sum_probs=22.2
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
+-.|+.+++.+++|+|||...+.-+.+.+
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999999987555444444
No 462
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=43.59 E-value=11 Score=29.61 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
..-+.+.+++|||||..
T Consensus 9 ~~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999975
No 463
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=43.50 E-value=12 Score=32.91 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.5
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|||||...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999854
No 464
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=43.43 E-value=14 Score=30.93 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
-.|.-+.+.+|+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHH
Confidence 45777889999999999853
No 465
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=43.10 E-value=13 Score=33.00 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=17.3
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+|+|||||...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 346888999999999999743
No 466
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=43.04 E-value=14 Score=30.91 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCchHHHHH
Confidence 45777889999999999853
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=43.02 E-value=13 Score=32.79 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|||||...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 446888999999999999753
No 468
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=42.98 E-value=14 Score=30.92 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
-.|.-+.+.+|+|+|||...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 46778889999999999853
No 469
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=42.97 E-value=10 Score=26.60 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 11 ~i~v~G~~~~GKssl 25 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSL 25 (181)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=42.94 E-value=7 Score=36.17 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..+..+++.+|+|+|||..
T Consensus 509 ~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHH
T ss_pred CCCceeEEECCCCCCHHHH
Confidence 3567899999999999985
No 471
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=42.92 E-value=10 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 8 ~i~v~G~~~~GKssl 22 (170)
T 1z08_A 8 KVVLLGEGCVGKTSL 22 (170)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 588999999999974
No 472
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=42.85 E-value=11 Score=26.18 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 8 ~i~v~G~~~~GKssl 22 (170)
T 1r2q_A 8 KLVLLGESAVGKSSL 22 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999964
No 473
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=42.84 E-value=14 Score=31.80 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+++|||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTL 154 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSL 154 (460)
T ss_dssp SSCCCEEEEESTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 474
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.84 E-value=26 Score=35.43 Aligned_cols=29 Identities=28% Similarity=0.090 Sum_probs=21.0
Q ss_pred ccCCCcEEEEccCCCchhhHhHHHHHHHH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELI 130 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf~lp~l~~l 130 (178)
+-.|+.+++.+++|||||...+--+++.+
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999986443344434
No 475
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=42.63 E-value=16 Score=34.15 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchhhH--hHHHHHHHH
Q psy12984 106 RDLVGSAKTGSGKTLA--FLVPAVELI 130 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla--f~lp~l~~l 130 (178)
..||+++.+|+|||.+ +++.-|..+
T Consensus 170 QsIiiSGESGAGKTe~tK~i~~yla~~ 196 (837)
T 1kk8_A 170 QSCLITGESGAGKTENTKKVIMYLAKV 196 (837)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCchhhHHHHHHHHHHh
Confidence 5799999999999988 555555444
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=42.49 E-value=11 Score=27.04 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
...|++.+.+|+|||..
T Consensus 23 ~~~i~v~G~~~~GKSsl 39 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSF 39 (195)
T ss_dssp CCEEEEEEBTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999964
No 477
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=42.34 E-value=11 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 4 ki~ivG~~~~GKSsl 18 (169)
T 3q85_A 4 KVMLVGESGVGKSTL 18 (169)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 478
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=42.27 E-value=16 Score=33.32 Aligned_cols=59 Identities=14% Similarity=-0.011 Sum_probs=39.0
Q ss_pred CCcHHHHHhhccccC--CCcEEEEccCCCchhhHhHHHHHHHHHhccCCCCCceEEEeecHHHHHHHHH
Q psy12984 90 KMTEIQARTIPPLLE--GRDLVGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQGKLRPLTNGVYL 156 (178)
Q Consensus 90 ~pt~iQ~~aip~~l~--g~dvi~~a~TGsGKTlaf~lp~l~~l~~~~~~~~~~~~~l~Ptr~La~qi~~ 156 (178)
.+|.-|..++..++. ..-+++.|.-|.|||.+..+-+-. +. ..+++-+|+.+=+..+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-------~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-------GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-------SCEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-------hCcEEECCCHHHHHHHHH
Confidence 578899999976654 224688999999999765544432 21 134667899765554443
No 479
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=42.10 E-value=10 Score=26.55 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=13.7
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
-.|++.+++|+|||..
T Consensus 15 ~~i~v~G~~~~GKssl 30 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSL 30 (179)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3689999999999974
No 480
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=42.08 E-value=16 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCchhhH--hHHHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLA--FLVPAVELI 130 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla--f~lp~l~~l 130 (178)
...||+.+.+|+|||.+ +++.-|..+
T Consensus 156 nQsIiisGESGAGKTe~tK~i~~yla~~ 183 (795)
T 1w7j_A 156 NQSIIVSGESGAGKTVSAKYAMRYFATV 183 (795)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHHHHhh
Confidence 35799999999999988 444444433
No 481
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=42.07 E-value=11 Score=27.85 Aligned_cols=16 Identities=38% Similarity=0.310 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..+++.+.+|+|||..
T Consensus 31 ~~i~i~G~~g~GKTTl 46 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLL 46 (221)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4688899999999964
No 482
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=42.03 E-value=14 Score=30.92 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=16.7
Q ss_pred cCCCcEEEEccCCCchhhHh
Q psy12984 103 LEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTlaf 122 (178)
..|.-+.+.+|+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHH
Confidence 46778889999999999853
No 483
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=42.03 E-value=10 Score=26.60 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..|++.+.+|+|||..
T Consensus 10 ~~i~v~G~~~~GKssl 25 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSAL 25 (181)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999964
No 484
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=41.95 E-value=11 Score=28.81 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhhHh
Q psy12984 104 EGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTlaf 122 (178)
.|.-|++.++.|||||...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4777889999999999753
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=41.82 E-value=11 Score=26.33 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+++|+|||..
T Consensus 6 ki~i~G~~~vGKSsl 20 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSL 20 (175)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCccHHHH
Confidence 588999999999964
No 486
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=41.78 E-value=12 Score=27.35 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhhHh
Q psy12984 107 DLVGSAKTGSGKTLAF 122 (178)
Q Consensus 107 dvi~~a~TGsGKTlaf 122 (178)
-+++.+++|+|||..+
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4788999999999753
No 487
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=41.70 E-value=12 Score=32.91 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHhH
Q psy12984 105 GRDLVGSAKTGSGKTLAFL 123 (178)
Q Consensus 105 g~dvi~~a~TGsGKTlaf~ 123 (178)
|.-+.+.+++|+|||....
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 4567889999999998643
No 488
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=41.67 E-value=11 Score=26.19 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..|++.+.+|+|||..
T Consensus 8 ~~i~v~G~~~~GKssl 23 (171)
T 1upt_A 8 MRILILGLDGAGKTTI 23 (171)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4689999999999964
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=41.66 E-value=10 Score=29.45 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.6
Q ss_pred ccCCCcEEEEccCCCchhhH
Q psy12984 102 LLEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTla 121 (178)
+..|.-|++.++.|||||..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp -CCCCEEEEECCC---CHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 34688899999999999975
No 490
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=41.39 E-value=15 Score=30.79 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+|+|+|||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTL 53 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTT 53 (372)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 4577788999999999984
No 491
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=41.31 E-value=17 Score=33.77 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchhhH--hHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLA--FLVPAVE 128 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla--f~lp~l~ 128 (178)
...||+++.+|+|||.+ +++-.|.
T Consensus 171 nQsIiiSGESGAGKTe~tK~im~yla 196 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRVIQYFA 196 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHHHHhhh
Confidence 35799999999999988 4444333
No 492
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=41.30 E-value=17 Score=34.63 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCchhhH--hHHHHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLA--FLVPAVELIY 131 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla--f~lp~l~~l~ 131 (178)
...||+++.+|+|||.+ +++..|..+.
T Consensus 146 ~QsIiisGESGAGKTe~~K~i~~yla~~~ 174 (995)
T 2ycu_A 146 DQSILCTGESGAGKTENTKKVIQYLAHVA 174 (995)
T ss_dssp CEEEEEECBTTSSHHHHHHHHHHHHHHHS
T ss_pred CcEEEecCCCCCCchhhHHHHHHHHHHhc
Confidence 35799999999999988 5555555443
No 493
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=41.24 E-value=12 Score=25.98 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
.|++.+.+|+|||..
T Consensus 2 ki~~~G~~~~GKssl 16 (164)
T 1r8s_A 2 RILMVGLDAAGKTTI 16 (164)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 494
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=41.22 E-value=14 Score=32.71 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccCCCchhhHh
Q psy12984 102 LLEGRDLVGSAKTGSGKTLAF 122 (178)
Q Consensus 102 ~l~g~dvi~~a~TGsGKTlaf 122 (178)
+..|.-+.+.+++|||||...
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999853
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=41.20 E-value=15 Score=30.96 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhhH
Q psy12984 103 LEGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 103 l~g~dvi~~a~TGsGKTla 121 (178)
..|.-+.+.+|+|+|||..
T Consensus 27 ~~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEEcCCCchHHHH
Confidence 4577788999999999974
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=41.04 E-value=9.8 Score=29.07 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCchhhH
Q psy12984 105 GRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla 121 (178)
|+-+++.+..|||||..
T Consensus 2 ~~~i~~~G~~g~GKtt~ 18 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTF 18 (241)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 44578899999999974
No 497
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=41.01 E-value=13 Score=31.35 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhhH
Q psy12984 104 EGRDLVGSAKTGSGKTLA 121 (178)
Q Consensus 104 ~g~dvi~~a~TGsGKTla 121 (178)
.|.-+++.+++|+|||..
T Consensus 25 ~~~~~~i~G~nG~GKstl 42 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNM 42 (430)
T ss_dssp TCSEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356678899999999975
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=40.91 E-value=12 Score=26.25 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q psy12984 106 RDLVGSAKTGSGKTLA 121 (178)
Q Consensus 106 ~dvi~~a~TGsGKTla 121 (178)
..|++.+.+|+|||..
T Consensus 16 ~~i~v~G~~~~GKSsl 31 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCL 31 (179)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3689999999999974
No 499
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=40.87 E-value=17 Score=34.75 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.1
Q ss_pred CCcEEEEccCCCchhhH--hHHHHHHHHH
Q psy12984 105 GRDLVGSAKTGSGKTLA--FLVPAVELIY 131 (178)
Q Consensus 105 g~dvi~~a~TGsGKTla--f~lp~l~~l~ 131 (178)
...||+++.+|+|||.+ +++..|..+.
T Consensus 172 ~QsIiisGESGAGKTe~~K~i~~yla~~~ 200 (1010)
T 1g8x_A 172 NQSLLITGESGAGKTENTKKVIQYLASVA 200 (1010)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHHHHHhc
Confidence 35799999999999988 5555555443
No 500
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=40.78 E-value=13 Score=26.15 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q psy12984 107 DLVGSAKTGSGKTLA 121 (178)
Q Consensus 107 dvi~~a~TGsGKTla 121 (178)
-+++.+++|+|||..
T Consensus 5 ~v~lvG~~gvGKStL 19 (165)
T 2wji_A 5 EIALIGNPNVGKSTI 19 (165)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
Done!