RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12984
(178 letters)
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 67.9 bits (165), Expect = 5e-15
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 61 EILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTL 120
E+ + F+ + + E+ L+ I GF K + IQ R I +++GRD++ +++G+GKT
Sbjct: 12 EVDVTPTFDTMG--LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA 69
Query: 121 AFLVPAVELIYNLKFMPR 138
F + ++ + +
Sbjct: 70 TFSISVLQCLDIQVRETQ 87
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 66.4 bits (161), Expect = 2e-14
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 61 EILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTL 120
EI+ S F+ + + E+ L+ I GF K + IQ R I P ++G D++ A++G+GKT
Sbjct: 9 EIVDS--FDDMN--LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 64
Query: 121 AFLVPAVELIYNLKFMPR 138
F + ++ I +
Sbjct: 65 TFAISILQQIELDLKATQ 82
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 66.8 bits (162), Expect = 2e-14
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 49 VEVQLPGSDVALEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDL 108
V V P I + F+ LK + I + + T IQ IP +LE RD+
Sbjct: 7 VSVTGPDYSATNVIEN---FDELK--LDPTIRNNILLASYQRPTPIQKNAIPAILEHRDI 61
Query: 109 VGSAKTGSGKTLAFLVPAVELIYNLKFMPRNGKSWQG 145
+ A+TGSGKT AFL+P + + +
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 98
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 65.8 bits (159), Expect = 3e-14
Identities = 13/70 (18%), Positives = 28/70 (40%)
Query: 67 QFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPA 126
+ E L + + + + G ++ QA + + G++L+ + T +GKTL +
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 127 VELIYNLKFM 136
V
Sbjct: 62 VREAIKGGKS 71
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 65.2 bits (158), Expect = 4e-14
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 125
+F+ ++ + EN L+ + GF + + IQ R I P++EG D++ A++G+GKT F +
Sbjct: 10 YKFDDME--LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 67
Query: 126 AVELIYNLKFMPR 138
A++ I P+
Sbjct: 68 ALQRIDTSVKAPQ 80
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 65.1 bits (157), Expect = 5e-14
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAF 122
TQF ++AI + F K TEIQ R IP L G +VG ++TG+GKT A+
Sbjct: 1 TQFTRFP--FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY 55
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 65.0 bits (157), Expect = 5e-14
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 125
+FE + L I +MG+ K + IQ +IP L GRD++ AK G+GK+ A+L+P
Sbjct: 3 NEFEDYC--LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 63.9 bits (154), Expect = 1e-13
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 68 FEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 125
FE + L I + GF K + IQ IP + GRD++ AK G+GKT AF++P
Sbjct: 3 FEDFY--LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 58
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 63.4 bits (153), Expect = 2e-13
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 66 TQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVP 125
+ F + L+AI D GF +E+Q IP + G D++ AK+G GKT F++
Sbjct: 1 SGFRDFL--LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 58
Query: 126 AVELIYNLKFMPRNGKSWQGK 146
++ + + +
Sbjct: 59 TLQQLEPVTGQVSVLVMCHTR 79
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 62.2 bits (150), Expect = 8e-13
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 80 LKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLK 134
+ IQ +L +A TG GKT L ++ L K
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK 87
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 54.6 bits (130), Expect = 3e-10
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 66 TQFEA--LKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFL 123
Q E L+ + L+ G+ + Q I +L GRD + TG GK+L +
Sbjct: 2 AQAEVLNLESGAKQ-VLQET--FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ 58
Query: 124 VPAVELI 130
+PA+ L
Sbjct: 59 IPALLLN 65
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 52.8 bits (126), Expect = 1e-09
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 60 LEILSSTQFEALKGKVCENTLKAIADMGFTKMTEIQARTIPPLLEGR-DLVGSAKTGSGK 118
+E ++ F L + +N L AI + GF K T+IQ + IP L ++V A+TGSGK
Sbjct: 1 VEYMN---FNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGK 55
Query: 119 TLAFLVP 125
T +F +P
Sbjct: 56 TASFAIP 62
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 41.1 bits (95), Expect = 2e-05
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYN 132
+ R + G+GKT +L V
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK 36
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 33.2 bits (74), Expect = 0.008
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 87 GFTKMTEIQARTIPPLLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM 136
+ Q E L+ TG GKTL ++ A +
Sbjct: 6 DLIQPRIYQEVIYAKCKETNCLI-VLPTGLGKTLIAMMIAEYRLTKYGGK 54
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.0 bits (66), Expect = 0.078
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 102 LLEGRDLVGSAKTGSGKTLAFLVPAVELIYNLKFM 136
L +G V G+GKT FL + +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLR 38
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.6 bits (56), Expect = 1.2
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 113 KTGSGKTLAFLVPAVELIYNLKFM-------PRNGKSWQGKLRPLTNGVYLVACNVFKST 165
KT +T F+V A + K P + + R L + L NV
Sbjct: 6 KTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKV 65
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human
(Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 24.5 bits (54), Expect = 1.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 73 GKVCENTLKAIADMGFTKMTEIQA 96
G E L I MG+ + + A
Sbjct: 1 GSEYETMLTEIMSMGYERERVVAA 24
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 25.8 bits (56), Expect = 2.0
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 6 EKHLMNKITKR-EKKKLKILQSKEKSKPAEKDSDANEDEDQTN 47
E+ L+ +I R EKK KI+ K SK + + E
Sbjct: 13 ERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQ 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.357
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 591,203
Number of extensions: 25537
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 25
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.8 bits)