BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12986
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 5/165 (3%)
Query: 44 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 103
+A+L ++ +T G+ +SH + + + I L P+ G +L
Sbjct: 169 IAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCIL 228
Query: 104 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKAR 163
+ +Y G +I P NP WL +++Y+ + + C K I + K
Sbjct: 229 TPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK----RIREEKKE 284
Query: 164 NIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFG 208
+ L T AE R F + F G A +G
Sbjct: 285 GLDLSSWVTAFNGAEPV-REETXEHFYQAFKEFGFRKEAFYPCYG 328
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC 71
A+ +AY++FS TTG I +HA +T LC
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLC 193
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 20/203 (9%)
Query: 16 KSWPTILDTD----DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV---- 67
+S P+I++ D D P P+ AYL ++ +T AG+ MSH V
Sbjct: 156 ESPPSIIEVDLLDLDAPNGYTFKEDEYPST---AYLQYTSGSTRTPAGVVMSHQNVRVNF 212
Query: 68 TSLCRSMKLACELYPSRHIALC--LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPA 125
L + P + AL L Y +G + + + + G+ ++L P PA
Sbjct: 213 EQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPA 272
Query: 126 LWLS-AVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIH 184
W+ S + ++ EL + + + R+ LG + T ++ ER +
Sbjct: 273 RWMHLMASDFHAFSAAPNF-AFELAARRTTDD--DMAGRD--LGNILT-ILSGSERVQAA 326
Query: 185 LTSAFSKLFSALGLSPRAVSTSF 207
F+ F+ L R + S+
Sbjct: 327 TIKRFADRFARFNLQERVIRPSY 349
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 1 MSLGLLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLA-G 59
++LG L E + +V+ P ++D D P+K LA TTG++
Sbjct: 6 VTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALF----------------QTTGLIPLA 49
Query: 60 IKMSHA------AVTSLCRSMKLACELYP 82
I ++HA AV L ++ L L+P
Sbjct: 50 ILLTHAHFDHVGAVAPLVEALDLPVYLHP 78
>pdb|3PER|A Chain A, Crystal Structure Of Boxb With Phosphate Bound To The
Diiron Center
pdb|3PER|B Chain B, Crystal Structure Of Boxb With Phosphate Bound To The
Diiron Center
pdb|3PF7|A Chain A, Crystal Structure Of Boxb With Malonate Bound To The
Diiron Center
pdb|3PF7|B Chain B, Crystal Structure Of Boxb With Malonate Bound To The
Diiron Center
pdb|3PM5|A Chain A, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|B Chain B, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|C Chain C, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|D Chain D, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3Q1G|A Chain A, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|B Chain B, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|C Chain C, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|D Chain D, Crystal Structure Of Boxb Crystallized With Peg
Length = 481
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 22 LDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE 79
L TDD K + A + PT + YL+F S T L G ++S A T +K E
Sbjct: 265 LGTDDPAKLRAAGVIDLPT--LQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFE 320
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLG 97
P AE +AY+ ++ TTG G+ + HA V +L + S L
Sbjct: 171 GPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDF--SGDDRWLLFHSLSFD 228
Query: 98 FALWVLSSVYSGHHSILIPPSEVEVNPALWLSAV 131
F++W + +S +++ P P +L+ +
Sbjct: 229 FSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVI 262
>pdb|3IBT|A Chain A, Structure Of 1h-3-Hydroxy-4-Oxoquinoline 2,4-Dioxygenase
(Qdo)
Length = 264
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 201 RAVSTSFGCRVNIAICLQL 219
+ VSTS GC VNI +C QL
Sbjct: 90 QXVSTSHGCWVNIDVCEQL 108
>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
pdb|1YYA|B Chain B, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
Length = 250
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 114 LIPP--SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIA-LGCV 170
L+PP SE V PA + V++ + +T YG ++ ++ AR ++ LGC
Sbjct: 29 LLPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGC- 87
Query: 171 RTCVVVAEERPRIH-----LTSAFSKLFSALGLSP 200
R +V ER R H L + +K G++P
Sbjct: 88 RYAIVGHSERRRYHGETDALVAEKAKRLLEEGITP 122
>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3SE2|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|C Chain C, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|D Chain D, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SMI|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMI|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMJ|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|3SMJ|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|4F1L|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|C Chain C, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|D Chain D, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1Q|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
pdb|4F1Q|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
Length = 193
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 98 FALWVLSSVYS-GHHSILIPPSEVEVNPALWLSAVS 132
+ + VL+ +Y+ G+HS+++PPS+ NP V+
Sbjct: 131 YYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVT 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,250,215
Number of Sequences: 62578
Number of extensions: 218773
Number of successful extensions: 506
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 10
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)