Query psy12986
Match_columns 230
No_of_seqs 135 out of 1637
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 16:12:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5a_A Long-chain-fatty-acid-- 100.0 5.9E-31 2E-35 228.6 16.3 178 37-219 178-361 (480)
2 3kxw_A Saframycin MX1 syntheta 100.0 1.5E-30 5.2E-35 231.5 17.1 177 37-218 162-338 (590)
3 4gs5_A Acyl-COA synthetase (AM 100.0 4.5E-30 1.5E-34 215.8 13.5 156 41-219 36-191 (358)
4 3gqw_A Fatty acid AMP ligase; 100.0 7.1E-29 2.4E-33 220.0 16.8 176 38-218 172-348 (576)
5 1pg4_A Acetyl-COA synthetase; 100.0 7.2E-29 2.5E-33 223.4 15.1 171 39-218 253-424 (652)
6 1ry2_A Acetyl-coenzyme A synth 100.0 1.8E-28 6.2E-33 221.1 16.1 172 38-218 258-430 (663)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.2E-28 7.5E-33 215.7 16.2 161 38-216 178-339 (539)
8 2d1s_A Luciferase, luciferin 4 100.0 8.4E-28 2.9E-32 212.4 17.4 159 42-218 192-353 (548)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.5E-28 2.2E-32 211.0 16.0 161 38-214 149-311 (504)
10 3ni2_A 4-coumarate:COA ligase; 100.0 7.7E-28 2.6E-32 212.1 16.4 164 37-217 173-340 (536)
11 3rix_A Luciferase, luciferin 4 100.0 8.5E-28 2.9E-32 212.4 16.6 161 41-219 189-352 (550)
12 3fce_A D-alanine--poly(phospho 100.0 8E-28 2.7E-32 210.8 15.9 165 38-217 140-304 (512)
13 3e7w_A D-alanine--poly(phospho 100.0 1.6E-27 5.6E-32 208.8 17.0 165 38-217 139-303 (511)
14 3o83_A Peptide arylation enzym 100.0 9.6E-28 3.3E-32 211.8 15.1 162 38-217 187-349 (544)
15 3r44_A Fatty acyl COA syntheta 99.9 1.8E-27 6.2E-32 208.9 15.5 160 38-217 166-325 (517)
16 3g7s_A Long-chain-fatty-acid-- 99.9 2.2E-27 7.6E-32 209.7 15.9 167 42-219 180-347 (549)
17 4fuq_A Malonyl COA synthetase; 99.9 2.4E-27 8.1E-32 207.5 15.1 161 38-218 151-311 (503)
18 1v25_A Long-chain-fatty-acid-C 99.9 2.9E-27 9.8E-32 208.7 15.3 162 38-218 172-335 (541)
19 3etc_A AMP-binding protein; ad 99.9 5.9E-27 2E-31 208.3 16.9 164 38-218 221-384 (580)
20 3c5e_A Acyl-coenzyme A synthet 99.9 9.9E-27 3.4E-31 206.5 17.9 163 38-219 202-366 (570)
21 3ipl_A 2-succinylbenzoate--COA 99.9 1.2E-26 4E-31 202.8 18.0 157 38-217 159-315 (501)
22 3nyq_A Malonyl-COA ligase; A/B 99.9 4.6E-27 1.6E-31 205.8 15.2 166 38-219 151-316 (505)
23 3rg2_A Enterobactin synthase c 99.9 8.9E-27 3E-31 208.5 17.3 164 38-217 180-344 (617)
24 4dg8_A PA1221; ANL superfamily 99.9 5.3E-27 1.8E-31 210.0 15.7 159 39-217 161-319 (620)
25 4gr5_A Non-ribosomal peptide s 99.9 1.3E-26 4.4E-31 205.7 13.0 160 38-217 210-369 (570)
26 2v7b_A Benzoate-coenzyme A lig 99.9 2.9E-26 9.9E-31 201.6 15.0 164 38-218 179-343 (529)
27 3qov_A Phenylacetate-coenzyme 99.9 4.7E-26 1.6E-30 195.8 15.6 160 39-214 82-245 (436)
28 3l8c_A D-alanine--poly(phospho 99.9 6.6E-26 2.2E-30 199.0 16.7 164 38-216 141-306 (521)
29 3tsy_A Fusion protein 4-coumar 99.9 2.6E-26 8.7E-31 215.1 14.8 164 37-217 220-387 (979)
30 1amu_A GRSA, gramicidin synthe 99.9 4E-26 1.4E-30 202.3 14.5 156 38-217 178-333 (563)
31 3hgu_A EHPF; phenazine, antibi 99.9 7.4E-26 2.5E-30 190.6 11.7 162 39-219 88-277 (369)
32 3ivr_A Putative long-chain-fat 99.9 3.4E-25 1.2E-29 194.0 16.1 158 38-218 156-313 (509)
33 2y27_A Phenylacetate-coenzyme 99.9 6.9E-25 2.4E-29 188.6 17.1 158 38-214 86-250 (437)
34 2y4o_A Phenylacetate-coenzyme 99.9 1.1E-24 3.8E-29 187.6 16.9 156 38-212 88-249 (443)
35 2vsq_A Surfactin synthetase su 99.9 2.9E-25 9.8E-30 213.1 13.1 161 38-217 603-763 (1304)
36 3ite_A SIDN siderophore synthe 99.9 2E-24 6.9E-29 191.2 14.2 158 39-218 172-337 (562)
37 3rix_A Luciferase, luciferin 4 80.6 15 0.00051 31.6 10.6 100 41-149 34-136 (550)
38 3ivr_A Putative long-chain-fat 78.8 29 0.00099 29.4 12.4 94 41-148 20-116 (509)
39 3ni2_A 4-coumarate:COA ligase; 75.9 37 0.0013 29.0 12.5 97 40-148 35-134 (536)
40 3ezx_A MMCP 1, monomethylamine 70.9 31 0.0011 25.9 9.0 55 84-141 93-149 (215)
41 2d1s_A Luciferase, luciferin 4 69.1 46 0.0016 28.5 10.7 84 60-148 51-137 (548)
42 3t5a_A Long-chain-fatty-acid-- 69.1 49 0.0017 27.5 12.7 106 40-150 37-147 (480)
43 3c5e_A Acyl-coenzyme A synthet 68.4 53 0.0018 28.3 11.0 100 40-148 56-159 (570)
44 2v7b_A Benzoate-coenzyme A lig 67.4 57 0.0019 27.7 11.0 84 60-148 47-133 (529)
45 1v25_A Long-chain-fatty-acid-C 67.3 59 0.002 27.8 13.0 85 59-148 45-132 (541)
46 3kxw_A Saframycin MX1 syntheta 67.2 60 0.0021 27.9 12.5 102 40-148 24-128 (590)
47 4gr5_A Non-ribosomal peptide s 65.9 64 0.0022 27.7 11.2 79 61-144 100-181 (570)
48 1t5h_X 4-chlorobenzoyl COA lig 64.5 64 0.0022 27.2 10.8 84 60-148 28-116 (504)
49 3g7s_A Long-chain-fatty-acid-- 64.5 67 0.0023 27.4 13.8 103 41-149 33-138 (549)
50 1amu_A GRSA, gramicidin synthe 63.9 71 0.0024 27.5 12.2 84 60-148 63-149 (563)
51 4fuq_A Malonyl COA synthetase; 62.4 63 0.0022 27.3 10.1 80 60-144 27-109 (503)
52 3r44_A Fatty acyl COA syntheta 60.7 77 0.0026 26.8 11.3 95 40-146 29-126 (517)
53 3tsy_A Fusion protein 4-coumar 60.4 98 0.0034 28.7 11.7 93 41-145 75-170 (979)
54 3o83_A Peptide arylation enzym 59.8 82 0.0028 26.9 11.0 90 40-143 43-135 (544)
55 4b2g_A GH3-1 auxin conjugating 58.7 2.1 7.2E-05 37.9 0.1 30 40-69 97-127 (609)
56 3l8c_A D-alanine--poly(phospho 57.7 70 0.0024 27.0 9.6 78 60-142 28-108 (521)
57 3etc_A AMP-binding protein; ad 57.6 94 0.0032 26.9 11.9 95 40-143 69-166 (580)
58 3ipl_A 2-succinylbenzoate--COA 57.0 80 0.0027 26.5 9.8 78 60-142 25-102 (501)
59 1mdb_A 2,3-dihydroxybenzoate-A 55.7 96 0.0033 26.4 11.1 79 60-143 49-130 (539)
60 1pg4_A Acetyl-COA synthetase; 53.7 1.2E+02 0.0039 26.7 11.9 95 41-143 90-187 (652)
61 1ry2_A Acetyl-coenzyme A synth 52.9 1.2E+02 0.0041 26.7 11.7 97 40-144 95-195 (663)
62 4epl_A Jasmonic acid-amido syn 50.2 8 0.00027 34.0 2.4 29 41-69 97-126 (581)
63 4eql_A 4-substituted benzoates 47.9 5.8 0.0002 34.9 1.1 29 41-69 92-121 (581)
64 3fce_A D-alanine--poly(phospho 47.1 1.3E+02 0.0044 25.3 11.0 77 61-142 26-105 (512)
65 3rg2_A Enterobactin synthase c 46.8 1.4E+02 0.0047 26.0 9.9 79 60-143 49-130 (617)
66 4dg8_A PA1221; ANL superfamily 39.0 2E+02 0.0067 25.1 9.9 77 61-142 52-131 (620)
67 2i2x_B MTAC, methyltransferase 38.0 1.3E+02 0.0046 22.9 7.7 56 84-142 124-181 (258)
68 1y80_A Predicted cobalamin bin 37.1 1.2E+02 0.0041 22.2 7.7 55 85-142 91-146 (210)
69 2yxb_A Coenzyme B12-dependent 31.5 1.4E+02 0.0046 21.0 7.0 48 92-142 29-76 (161)
70 3gqw_A Fatty acid AMP ligase; 31.2 2.4E+02 0.0082 23.8 11.3 88 59-148 47-141 (576)
71 2trc_P Phosducin, MEKA, PP33; 30.5 7.6 0.00026 29.3 -0.8 18 50-68 3-20 (217)
72 3nyq_A Malonyl-COA ligase; A/B 30.2 2.4E+02 0.0083 23.6 8.8 77 60-143 47-123 (505)
73 3e7w_A D-alanine--poly(phospho 30.2 2.4E+02 0.0083 23.6 10.8 77 60-141 25-105 (511)
74 3ite_A SIDN siderophore synthe 30.1 2.5E+02 0.0087 23.8 11.3 96 40-142 33-133 (562)
75 1a0r_P Phosducin, MEKA, PP33; 24.7 9.3 0.00032 29.5 -1.3 18 50-68 16-33 (245)
76 3kjj_A NMB1025 protein; YJGF p 24.0 71 0.0024 21.7 3.3 40 47-86 29-69 (128)
77 3bul_A Methionine synthase; tr 22.7 3.9E+02 0.013 23.4 8.4 48 92-142 109-156 (579)
78 1xrs_B D-lysine 5,6-aminomutas 22.2 1.8E+02 0.0063 22.5 5.7 55 85-142 123-187 (262)
79 2vsq_A Surfactin synthetase su 21.2 4.8E+02 0.016 25.1 9.5 80 60-144 488-570 (1304)
No 1
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.97 E-value=5.9e-31 Score=228.59 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=146.0
Q ss_pred CCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCC------CCeEEEecCCcCchhHHHHHHHHhhhCc
Q psy12986 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP------SRHIALCLDPYCGLGFALWVLSSVYSGH 110 (230)
Q Consensus 37 ~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 110 (230)
....++++++|+|||||||.||||+++|+++..++......+++.. +|++++++|++|++|++..++.+++.|+
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 3456789999999999999999999999999999888888888877 8999999999999998877899999999
Q ss_pred eeEEeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHH
Q psy12986 111 HSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFS 190 (230)
Q Consensus 111 ~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~ 190 (230)
++++.++..+..+|..|++.|+++++| +..+|.++..++.... ........++++||.+++||+ ++++++.++|.
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~---~~~~~~~~~l~~lr~i~~gG~-~l~~~~~~~~~ 332 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRT---TDDDMAGRDLGNILTILSGSE-RVQAATIKRFA 332 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHC---CTGGGTTCCCTTCCEEEECCT-TCCHHHHHHHH
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhc---CcccccccchhhhheeeecCC-cCCHHHHHHHH
Confidence 999988766556899999999999999 6677777766554321 112345678999999999998 79999999999
Q ss_pred HHhhhCCCCccccccccCCCcceeEEeec
Q psy12986 191 KLFSALGLSPRAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 191 ~~~~~~gl~~~~~~~~YG~te~~~~~~~~ 219 (230)
++|+..|++...+.+.||+||++.++...
T Consensus 333 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 361 (480)
T 3t5a_A 333 DRFARFNLQERVIRPSYWLAEATVYVATS 361 (480)
T ss_dssp HHSGGGTCCGGGEEEEEEETTTTEEEEEC
T ss_pred HHHhhcCCChhhccccccccccceeEeec
Confidence 99988888888899999999998876654
No 2
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.97 E-value=1.5e-30 Score=231.47 Aligned_cols=177 Identities=19% Similarity=0.294 Sum_probs=157.8
Q ss_pred CCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 37 ~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
....++|+++|+|||||||.||||+++|++++..+......+++.++|++++++|++|++|+...++.+++.|+++++.+
T Consensus 162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 34568899999999999999999999999999999999889999999999999999999998876889999999999998
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
++.+..+|..|++.|+++++|++..+|.+++.+.+.+.. ......++++||.+++||+ ++++++.++|.+.|+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~l~~lr~~~~gg~-~l~~~~~~~~~~~~~~~ 316 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE----EKKEGLDLSSWVTAFNGAE-PVREETMEHFYQAFKEF 316 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG----GGGTTCCCTTCCEEEECSS-CCCHHHHHHHHHHHGGG
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh----hhccCCCchhhHHHhhCCC-CCCHHHHHHHHHHHHHc
Confidence 777666899999999999999999999999988765421 1344668999999999998 89999999999999988
Q ss_pred CCCccccccccCCCcceeEEee
Q psy12986 197 GLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~~ 218 (230)
|++...+++.||+||++.++..
T Consensus 317 g~~~~~~~~~YG~TE~~~~~~~ 338 (590)
T 3kxw_A 317 GFRKEAFYPCYGLAEATLLVTG 338 (590)
T ss_dssp TCCGGGEEEEEECGGGSSEEEE
T ss_pred CCCccccccccccccccceeec
Confidence 8888889999999999887664
No 3
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=4.5e-30 Score=215.83 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=133.6
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchh
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 120 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 120 (230)
.+|++||+|||||||.||||++||+++.+++......++++++|++++++|++|+.|+.. ++.+++.|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~~- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPTA- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCCS-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCccc-
Confidence 378999999999999999999999999999999999999999999999999999999876 788899999999886532
Q ss_pred hcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCCCCc
Q psy12986 121 EVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSP 200 (230)
Q Consensus 121 ~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~gl~~ 200 (230)
+ +++.|+++++|+++.+|++++.+++.. ....++++||.+++||+ ++++++.+++.+. |
T Consensus 114 --~---~~~~i~~~~~t~~~~~P~~l~~ll~~~--------~~~~~l~~lr~v~~gG~-~l~~~~~~~~~~~----~--- 172 (358)
T 4gs5_A 114 --N---PLAGLDHADFDFVAMVPMQLQSILENS--------ATSGQVDRLGKVLLGGA-PVNHALAMQISDL----A--- 172 (358)
T ss_dssp --C---TTTTCSSCCCSEEEECHHHHHHHHHCT--------TTGGGGGGGCSEEECSS-CCCHHHHHHHHTC----S---
T ss_pred --c---HHHHHHHhCCeEEEcChHHHHHhhccc--------cccccCCcceEEEEccc-CCCchheeccccc----C---
Confidence 2 367799999999999999999877543 22447899999999998 8999999988763 3
Q ss_pred cccccccCCCcceeEEeec
Q psy12986 201 RAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 201 ~~~~~~YG~te~~~~~~~~ 219 (230)
..+.+.||+||++..+...
T Consensus 173 ~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 173 MPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp SCEEEEEECGGGSSEEEEE
T ss_pred ceEEeccccccccceeecc
Confidence 3589999999987765543
No 4
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.96 E-value=7.1e-29 Score=220.00 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=152.9
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHH-cccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA-CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.+.++|+++|+|||||||.||||+++|++++.++...... +++.++|++++++|++|+.|+...++.++..|+++++.+
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 3457899999999999999999999999999988777654 788999999999999999998877888899999999887
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
+.++..+|..|++.|+++++|+++.+|++++.+.+.+. .......++++||.+++||+ ++++++.++|.+.|+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~~~~~~l~~lr~~~~gg~-~l~~~~~~~~~~~~~~~ 326 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVN----EKDLAELDLSCWRVAGIGAE-PISAEQLHQFAECFRQV 326 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCC----HHHHTTCCCTTCCEEEECSS-CCCHHHHHHHHHHHGGG
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhc----ccccccCChhhhHhhhccCc-cCCHHHHHHHHHHHhhc
Confidence 76655689999999999999999999999987765432 22345668999999999998 89999999999999888
Q ss_pred CCCccccccccCCCcceeEEee
Q psy12986 197 GLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~~ 218 (230)
++++..+.+.||+||++.++..
T Consensus 327 ~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 327 NFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp TCCGGGEEEEEECGGGSSEEEE
T ss_pred CCCcccccccCCcccccceeec
Confidence 8877889999999999877654
No 5
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.96 E-value=7.2e-29 Score=223.35 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=143.4
Q ss_pred CCCCceEEEEEccCCCCCceeeeccHHHHHHHHH-HHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 39 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR-SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 39 ~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
..++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++..|++|+.|....++.+++.|+++++++.
T Consensus 253 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~ 332 (652)
T 1pg4_A 253 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEG 332 (652)
T ss_dssp EETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECS
T ss_pred cCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECC
Confidence 4578999999999999999999999999887653 455678899999999999999999986668899999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
.....+|..+++.|+++++|+++.+|++++.+.+.... .....++++||.+++||+ ++++++.++|.+.|+.
T Consensus 333 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~~~l~sLr~i~~gGe-~l~~~~~~~~~~~~g~-- 404 (652)
T 1pg4_A 333 VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----AIEGTDRSSLRILGSVGE-PINPEAWEWYWKKIGK-- 404 (652)
T ss_dssp CTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----GTTTCCCTTCCEEEEESS-CCCHHHHHHHHHHTTT--
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc-----ccccCCcCceEEEEEecC-CCCHHHHHHHHHHhCC--
Confidence 43335789999999999999999999999988764321 234568899999999998 8999999999998742
Q ss_pred CCccccccccCCCcceeEEee
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~ 218 (230)
....+.+.||+||++..+..
T Consensus 405 -~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 405 -EKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp -TCSCEEEEBCCGGGSSCSBC
T ss_pred -CCCcEEccccCcccccceec
Confidence 23468999999999865543
No 6
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.96 E-value=1.8e-28 Score=221.09 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=143.1
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHH-HHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR-SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
+..++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++..|++|+.|....++.+++.|+++++++
T Consensus 258 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~ 337 (663)
T 1ry2_A 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFE 337 (663)
T ss_dssp CEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEEC
T ss_pred ccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEEC
Confidence 34578999999999999999999999999887654 44557889999999999999999998666889999999999987
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
......++..+++.|+++++|+++.+|++++.+.+.... ..+..++++||.+++||+ |+++++.+++.+.|+
T Consensus 338 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----~~~~~~l~sLr~i~~gGe-~l~~~~~~~~~~~~g-- 409 (663)
T 1ry2_A 338 GTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS-----YIENHSLKSLRCLGSVGE-PIAAEVWEWYSEKIG-- 409 (663)
T ss_dssp SCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-----SSSSCCCTTCCEEEECSS-CCCHHHHHHHHHTTS--
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc-----ccccCCcCceEEEEEEcC-CCCHHHHHHHHHHhC--
Confidence 544345789999999999999999999999987654321 134568999999999998 899999999998873
Q ss_pred CCCccccccccCCCcceeEEee
Q psy12986 197 GLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~~ 218 (230)
.+...+.+.||+||++..+..
T Consensus 410 -~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 410 -KNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp -CSSSCEEECBCCTTTCSCSEE
T ss_pred -CCCceEEEeECCccccCeeec
Confidence 223568999999998765443
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.96 E-value=2.2e-28 Score=215.73 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=140.7
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHH-HHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v~~~ 116 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+.. .++.+++.|+++++.+
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 257 (539)
T 1mdb_A 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257 (539)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence 346789999999999999999999999999999888888889999999999999999999875 5889999999999987
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
.+ ++..+++.|+++++|+++.+|++++.+++.. .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 258 ~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~~~~gG~-~l~~~~~~~~~~~~~-- 323 (539)
T 1mdb_A 258 SP----SPDDAFPLIEREKVTITALVPPLAMVWMDAA-------SSRRDDLSSLQVLQVGGA-KFSAEAARRVKAVFG-- 323 (539)
T ss_dssp SS----SHHHHHHHHHHHTCSEEEECHHHHHHHHHHH-------HHCCCCCTTCCEEEEESS-CCCHHHHTTHHHHTC--
T ss_pred CC----CHHHHHHHHHHcCCeEEEccHHHHHHHHhCc-------cccCCCccceeEEEEcCC-CCCHHHHHHHHHHhC--
Confidence 54 5899999999999999999999999876543 233558899999999998 799999999998873
Q ss_pred CCCccccccccCCCcceeEE
Q psy12986 197 GLSPRAVSTSFGCRVNIAIC 216 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~ 216 (230)
..+.+.||+||++..+
T Consensus 324 ----~~~~~~YG~TE~~~~~ 339 (539)
T 1mdb_A 324 ----CTLQQVFGMAEGLVNY 339 (539)
T ss_dssp ----SEEEEEEECTTSCEEE
T ss_pred ----CcEEEEEcCCCCcccc
Confidence 3589999999976543
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.95 E-value=8.4e-28 Score=212.43 Aligned_cols=159 Identities=12% Similarity=0.189 Sum_probs=136.7
Q ss_pred CceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHH---cccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCc
Q psy12986 42 EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 118 (230)
Q Consensus 42 ~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 118 (230)
+|+++|+|||||||.||||+++|+++...+...... +++.++|++++++|++|+.|+...++.++ .|+++++.+.+
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~ 270 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKF 270 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCC
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCC
Confidence 899999999999999999999999999888776665 67788999999999999999876566777 99999998743
Q ss_pred hhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCCC
Q psy12986 119 EVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGL 198 (230)
Q Consensus 119 ~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~gl 198 (230)
++..+++.|+++++|+++.+|++++.+.+.. .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 271 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gG~-~l~~~~~~~~~~~~~---- 334 (548)
T 2d1s_A 271 ----DEETFLKTLQDYKCTSVILVPTLFAILNKSE-------LLNKYDLSNLVEIASGGA-PLSKEVGEAVARRFN---- 334 (548)
T ss_dssp ----CHHHHHHHHHHTTEEEEEECHHHHHHHHHCS-------CGGGSCCTTCCEEEECSS-CCCHHHHHHHHHHTT----
T ss_pred ----CHHHHHHHHHHcCCcEEEecHHHHHHHHhCc-------ccccccccceeEEEEcCc-cCCHHHHHHHHHHcC----
Confidence 5899999999999999999999999876532 233457899999999998 799999999999884
Q ss_pred CccccccccCCCcceeEEee
Q psy12986 199 SPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 199 ~~~~~~~~YG~te~~~~~~~ 218 (230)
...+.+.||+||++.++..
T Consensus 335 -~~~i~~~YG~TE~~~~~~~ 353 (548)
T 2d1s_A 335 -LPGVRQGYGLTETTSAIII 353 (548)
T ss_dssp -CSCCEEEEECGGGSSEEEE
T ss_pred -CCceeeccccccccceeee
Confidence 2348999999999876654
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.95 E-value=6.5e-28 Score=211.02 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=135.8
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHccc--CCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
...++|+++|+|||||||.||||+++|+++...+......+++ .++|++++++|++|..|+...++.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 3467899999999999999999999999999988888777888 78899999999999999865588999999999998
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA 195 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~ 195 (230)
+.+ +|..+++.|+++++|+++.+|++++.+.+.... .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 229 ~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~l~~lr~~~~gG~-~l~~~~~~~~~~~~~- 297 (504)
T 1t5h_X 229 EEF----RPVDALQLVQQEQVTSLFATPTHLDALAAAAAH-----AGSSLKLDSLRHVTFAGA-TMPDAVLETVHQHLP- 297 (504)
T ss_dssp SSC----CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCC-----TTCCCCCTTCCEEEECCT-TCCHHHHHHHHHHCC-
T ss_pred CCC----CHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcc-----ccccccCccccEEEEcCC-cCCHHHHHHHHHhcC-
Confidence 753 589999999999999999999999987764311 123457899999999998 799999999999873
Q ss_pred CCCCccccccccCCCccee
Q psy12986 196 LGLSPRAVSTSFGCRVNIA 214 (230)
Q Consensus 196 ~gl~~~~~~~~YG~te~~~ 214 (230)
..+.+.||+||++.
T Consensus 298 -----~~~~~~YG~TE~~~ 311 (504)
T 1t5h_X 298 -----GEKVNIYGTTEAMN 311 (504)
T ss_dssp -----SEEEEEEEETTTEE
T ss_pred -----cceeeeeccccccc
Confidence 34789999999943
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.95 E-value=7.7e-28 Score=212.09 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=140.2
Q ss_pred CCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH----HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCcee
Q psy12986 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 112 (230)
Q Consensus 37 ~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 112 (230)
....++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++++|++|..|+...++.++..|+++
T Consensus 173 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 252 (536)
T 3ni2_A 173 VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252 (536)
T ss_dssp CCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCE
T ss_pred CCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEE
Confidence 3456899999999999999999999999999988766543 346778999999999999999877788999999999
Q ss_pred EEeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHH
Q psy12986 113 ILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKL 192 (230)
Q Consensus 113 v~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~ 192 (230)
++.+.+ ++..+++.|+++++|++..+|++++.+++.. .....++++||.+++||+ ++++++.++|++.
T Consensus 253 v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gGe-~l~~~~~~~~~~~ 320 (536)
T 3ni2_A 253 LIMPKF----EIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------DLDKHDLSSLRMIKSGGA-PLGKELEDTVRAK 320 (536)
T ss_dssp EECSSC----CHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------CGGGSCCTTCCEEEEESS-CCCHHHHHHHHHH
T ss_pred EEcCCC----CHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------ccccCCCccceEEEECCC-CCCHHHHHHHHHH
Confidence 998754 5889999999999999999999999876542 234568899999999998 7999999999998
Q ss_pred hhhCCCCccccccccCCCcceeEEe
Q psy12986 193 FSALGLSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 193 ~~~~gl~~~~~~~~YG~te~~~~~~ 217 (230)
|+ +..+.+.||+||++.++.
T Consensus 321 ~~-----~~~l~~~YG~TE~~~~~~ 340 (536)
T 3ni2_A 321 FP-----QARLGQGYGMTEAGPVLA 340 (536)
T ss_dssp CT-----TSEEEEEEECGGGSSEEE
T ss_pred CC-----CCCccccccccccchhhh
Confidence 74 345899999999986544
No 11
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.95 E-value=8.5e-28 Score=212.41 Aligned_cols=161 Identities=14% Similarity=0.218 Sum_probs=132.7
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHH---cccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
++|+++|+|||||||.||||+++|+++...+...... .++.+++++++++|++|++|+.. .+.+++.|+++++.+.
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYR 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSS
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCC
Confidence 5789999999999999999999999999887666554 46778999999999999999875 7888999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
+ ++..+++.|+++++|+++.+|++++.+++.. .....++++||.+++||+ ++++++.++|.+.|+.
T Consensus 268 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gG~-~l~~~~~~~~~~~~~~-- 333 (550)
T 3rix_A 268 F----EEELFLRSLQDYKIQSALLVPTLFSFFAKST-------LIDKYDLSNLHEIASGGA-PLSKEVGEAVAKRFHL-- 333 (550)
T ss_dssp C----CHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-------GGGGSCCTTCCEEEECSS-CCCHHHHHHHHHHTTC--
T ss_pred C----CHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-------cccccCcccccEEEEecC-CCCHHHHHHHHHHcCC--
Confidence 4 5899999999999999999999999876542 234568899999999998 7999999999998842
Q ss_pred CCccccccccCCCcceeEEeec
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~~ 219 (230)
..+.+.||+||++..+...
T Consensus 334 ---~~v~~~YG~TE~~~~~~~~ 352 (550)
T 3rix_A 334 ---PGIRQGYGLTETTSAILIT 352 (550)
T ss_dssp ---SCCEEEEECGGGSSEEEEC
T ss_pred ---CccccccCcCccccceecC
Confidence 2378999999998766544
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.95 E-value=8e-28 Score=210.79 Aligned_cols=165 Identities=12% Similarity=0.121 Sum_probs=139.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|+.++.. ++.+++.|+++++.++
T Consensus 140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDK 218 (512)
T ss_dssp SCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCH
T ss_pred cCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCH
Confidence 456789999999999999999999999999999988888899999999999999999999865 8999999999999865
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
. ...++..+++.++++++|+++.+|++++.++... .....++++||.+++||+ ++++++.++|.+.|.
T Consensus 219 ~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~~G~-~l~~~~~~~~~~~~~--- 286 (512)
T 3fce_A 219 D-MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------SFSESMLPNMKTFLFCGE-VLPNEVARKLIERFP--- 286 (512)
T ss_dssp H-HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST-------TCSTTTSTTCCEEEECSS-CCCHHHHHHHHHHCT---
T ss_pred H-HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc-------cccchhCccccEEEEecC-cCCHHHHHHHHHHCC---
Confidence 3 2357999999999999999999999998865432 234567899999999998 799999999999874
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
+..+.+.||+||++..+.
T Consensus 287 --~~~i~~~YG~TE~~~~~~ 304 (512)
T 3fce_A 287 --KATIMNTYGPTEATVAVT 304 (512)
T ss_dssp --TCEEEEEECCGGGSSCSE
T ss_pred --CCEEEeCcccChhhhhee
Confidence 345899999999876543
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.95 E-value=1.6e-27 Score=208.83 Aligned_cols=165 Identities=11% Similarity=0.088 Sum_probs=142.9
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|+.++.. ++.++..|+++++.+.
T Consensus 139 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 139 WVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTK 217 (511)
T ss_dssp SCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCH
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcCh
Confidence 346789999999999999999999999999999998888899999999999999999999765 8899999999998765
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
.. ..+|..+++.++++++|+++.+|++++.+++.. .....+++++|.+++||+ ++++++.+++.+.|+
T Consensus 218 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~l~~~~~~G~-~l~~~~~~~~~~~~~--- 285 (511)
T 3e7w_A 218 DA-VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------GFSQDLLPHADTFMFCGE-VLPVSVAKALLERFP--- 285 (511)
T ss_dssp HH-HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST-------TCSTTTCTTCCEEEECSS-CCCHHHHHHHHHHCT---
T ss_pred hh-hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc-------ccccccCCcccEEEEecC-CCCHHHHHHHHHHCC---
Confidence 32 357999999999999999999999999876542 234557889999999998 799999999999874
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
+..+.+.||+||++..+.
T Consensus 286 --~~~i~~~YG~TE~~~~~~ 303 (511)
T 3e7w_A 286 --KAKIFNTYGPTEATVAVT 303 (511)
T ss_dssp --TCEEEECCCCGGGSSCSE
T ss_pred --CcEEEeCcccchheeeee
Confidence 345899999999876533
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.95 E-value=9.6e-28 Score=211.84 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=139.6
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHH-HHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v~~~ 116 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|.+++.. .++.++..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 346789999999999999999999999999999999988999999999999999999998764 4788999999999987
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
.+ ++..+++.|+++++|+++.+|++++.+++... ....++++||.+++||+ ++++++.+++.+.|+
T Consensus 267 ~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------~~~~~~~~lr~i~~gG~-~l~~~~~~~~~~~~~-- 332 (544)
T 3o83_A 267 NP----EPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA-------QYKDQIQSLKLLQVGGA-SFPESLARQVPEVLN-- 332 (544)
T ss_dssp SC----CHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT-------TTHHHHTTCCEEEEESS-CCCHHHHTHHHHHHC--
T ss_pred CC----CHHHHHHHHHHHCCCEEEechHHHHHHHhchh-------hccccCCcceEEEEcCC-CCCHHHHHHHHHHhC--
Confidence 54 58899999999999999999999998776532 22346789999999998 799999999999883
Q ss_pred CCCccccccccCCCcceeEEe
Q psy12986 197 GLSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~ 217 (230)
..+.+.||+||++..+.
T Consensus 333 ----~~~~~~YG~TE~~~~~~ 349 (544)
T 3o83_A 333 ----CKLQQVFGMAEGLVNYT 349 (544)
T ss_dssp ----SEEEEEEECTTSCEEEC
T ss_pred ----CcEEeeeccccccceee
Confidence 35899999999876544
No 15
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.95 E-value=1.8e-27 Score=208.86 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=134.1
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|+.|+...+ .+++.|+++++.+.
T Consensus 166 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 166 ECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI-FSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHH-HHHHHTCEEEECSS
T ss_pred CCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHH-HHHhcCeEEEEeCC
Confidence 45679999999999999999999999999999999988899999999999999999999987644 44459999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
+ ++..+++.|.++++|++..+|++++.+.+.. .....++++||.+++||+ ++++++.++|.+. +
T Consensus 245 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~i~~gGe-~l~~~~~~~~~~~----~ 308 (517)
T 3r44_A 245 F----DATKVWSLIVEERVCIGGAVPAILNFMRQVP-------EFAELDAPDFRYFITGGA-PMPEALIKIYAAK----N 308 (517)
T ss_dssp C----CHHHHHHHHHHTTCCEEEECHHHHHHHHHSH-------HHHHCCCTTCCEEEECSS-CCCHHHHHHHHHT----T
T ss_pred C----CHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc-------ccccCCCCcccEEEECCC-CCCHHHHHHHHhc----C
Confidence 4 5899999999999999999999999876532 233457889999999998 7999999988874 2
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
..+.+.||+||++..+.
T Consensus 309 ---~~~~~~YG~TE~~~~~~ 325 (517)
T 3r44_A 309 ---IEVVQGYALTESCGGGT 325 (517)
T ss_dssp ---CEEEEEEECGGGTTCEE
T ss_pred ---CcEEEeeccccccccee
Confidence 35899999999876543
No 16
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.95 E-value=2.2e-27 Score=209.68 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=142.1
Q ss_pred CceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhh
Q psy12986 42 EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 121 (230)
Q Consensus 42 ~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~ 121 (230)
+|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|..|+.. ++.++..|+++++.+.+
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~--- 255 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMF--- 255 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSC---
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCC---
Confidence 89999999999999999999999999999999888899999999999999999999877 88899999999998744
Q ss_pred cChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh-CCCCc
Q psy12986 122 VNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA-LGLSP 200 (230)
Q Consensus 122 ~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~-~gl~~ 200 (230)
++..+++.|+++++|+++.+|++++.+++.... .....++++||.+++||+ ++++++.+++.+.+.. .+.+.
T Consensus 256 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~lr~~~~gg~-~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 256 -NQEMLAENIEKYKGTFSWAVPPALNVLVNTLES-----SNKTYDWSYLKVFATGAW-PVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp -CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHH-----SCCCCCCTTCCEEEEESS-CCCHHHHHHHHHHHHHHSSCTT
T ss_pred -CHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhh-----hcccCCccceeEEEeCCc-cCCHHHHHHHHHHHHhhcCCcc
Confidence 589999999999999999999999988765321 122367899999999998 8999999999988432 23334
Q ss_pred cccccccCCCcceeEEeec
Q psy12986 201 RAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 201 ~~~~~~YG~te~~~~~~~~ 219 (230)
..+.+.||+||++.++...
T Consensus 329 ~~~~~~YG~TE~~~~~~~~ 347 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTN 347 (549)
T ss_dssp CEEEEEEECGGGSSEEEEC
T ss_pred ccccceEeccccchhhhcC
Confidence 5689999999998776543
No 17
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.95 E-value=2.4e-27 Score=207.50 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=137.8
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|..|+....+.+++.|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 34678999999999999999999999999999999998899999999999999999999976667888999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
+ +|..+++.++ ++|+++.+|++++.+++.. .....+++++|.+++||+ ++++++.++|.+.|+
T Consensus 231 ~----~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~gg~-~l~~~~~~~~~~~~~--- 293 (503)
T 4fuq_A 231 F----DPDKILDLMA--RATVLMGVPTFYTRLLQSP-------RLTKETTGHMRLFISGSA-PLLADTHREWSAKTG--- 293 (503)
T ss_dssp C----CHHHHHHHHT--TCCEEEECHHHHHHHHTCT-------TCSTTTTTTCCEEEECSS-CCCHHHHHHHHHHHS---
T ss_pred C----CHHHHHHHHh--hcCEEEEHHHHHHHHHhCC-------CccccchhhcEEEEECCC-CCCHHHHHHHHHHhC---
Confidence 4 5889999998 8999999999999876542 234557889999999998 899999999999883
Q ss_pred CCccccccccCCCcceeEEee
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~ 218 (230)
..+.+.||+||++..+..
T Consensus 294 ---~~~~~~YG~TE~~~~~~~ 311 (503)
T 4fuq_A 294 ---HAVLERYGMTETNMNTSN 311 (503)
T ss_dssp ---CCEEECCEETTTEECBCC
T ss_pred ---CCccceEcccccCccccc
Confidence 358999999999876543
No 18
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.95 E-value=2.9e-27 Score=208.68 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=134.8
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHH--HHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM--KLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
...++++++|+|||||||.||||+++|+++..+.... ...+++.++|++++++|++|..|+.. .+.+++.|+++++.
T Consensus 172 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 172 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLP 250 (541)
T ss_dssp CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEEC
T ss_pred cCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEee
Confidence 3457899999999999999999999999998776552 34567788999999999999998754 77889999999987
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA 195 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~ 195 (230)
++. .+|..+++.|+++++|+++.+|++++.+++.. .....++++||.+++||+ ++++++.++| +.+
T Consensus 251 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gG~-~l~~~~~~~~-~~~-- 316 (541)
T 1v25_A 251 GPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYL-------ESTGHRLKTLRRLVVGGS-AAPRSLIARF-ERM-- 316 (541)
T ss_dssp TTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-------HHHTCCCSSCCEEEECSS-CCCHHHHHHH-HHT--
T ss_pred CCC---CCHHHHHHHHHhcCeeEEecchHHHHHHHhhh-------hccCCcchhccEEEECCC-CCCHHHHHHH-HHh--
Confidence 532 36999999999999999999999999877543 223457889999999998 7999999999 555
Q ss_pred CCCCccccccccCCCcceeEEee
Q psy12986 196 LGLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 196 ~gl~~~~~~~~YG~te~~~~~~~ 218 (230)
| ..+.+.||+||++.++..
T Consensus 317 -g---~~~~~~YG~TE~~~~~~~ 335 (541)
T 1v25_A 317 -G---VEVRQGYGLTETSPVVVQ 335 (541)
T ss_dssp -T---CEEEEEEECGGGSSEEEE
T ss_pred -C---Cceeecccccccccceec
Confidence 2 358999999999876554
No 19
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.95 E-value=5.9e-27 Score=208.33 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=139.3
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|++++..+.......++.++++.++..|++|..+.+..++.++..|+++++.+.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 35678999999999999999999999999988877766667888999999999999998887768889999999998853
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
. ..++..+++.|+++++|+++.+|++++.+.+. .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 301 ~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--------~~~~~~l~~lr~i~~gGe-~l~~~~~~~~~~~~g--- 366 (580)
T 3etc_A 301 D--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--------DLSHYNFSTLKYAVVAGE-PLNPEVFNRFLEFTG--- 366 (580)
T ss_dssp S--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--------CC---CCTTCCEEEECSS-CCCHHHHHHHHHHHS---
T ss_pred C--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--------ccccCCCccceEEEEccC-CCCHHHHHHHHHHhC---
Confidence 3 23689999999999999999999999987653 233568899999999998 899999999999873
Q ss_pred CCccccccccCCCcceeEEee
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~ 218 (230)
..+.++||+||++..+..
T Consensus 367 ---~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 367 ---IKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ---CCCEEEECCTTSSCCEEC
T ss_pred ---CeEecccccccccceeec
Confidence 348999999999776554
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.95 E-value=9.9e-27 Score=206.48 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=136.6
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHH--HHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTS--LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
...++|+++|+|||||||.||||+++|+ ++. ..... ..+++.++|++++.+|++|+.|+...++.++..|+++++.
T Consensus 202 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 202 ETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp CCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 3467899999999999999999999999 444 33333 5678889999999999999999876688899999999998
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA 195 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~ 195 (230)
+.. ..+|..+++.|+++++|+++.+|++++.+.+. .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 280 ~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~~~~~~lr~i~~gGe-~l~~~~~~~~~~~~g- 347 (570)
T 3c5e_A 280 LLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--------DLSSYKFPHLQNCVTVGE-SLLPETLENWRAQTG- 347 (570)
T ss_dssp CCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--------CTTTCCCTTCCEEEEESS-CCCHHHHHHHHHHHS-
T ss_pred cCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--------cccccccccceEEEEcCC-cCCHHHHHHHHHHhC-
Confidence 643 23799999999999999999999999987653 123457899999999998 799999999999873
Q ss_pred CCCCccccccccCCCcceeEEeec
Q psy12986 196 LGLSPRAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 196 ~gl~~~~~~~~YG~te~~~~~~~~ 219 (230)
..+.+.||+||++.++...
T Consensus 348 -----~~i~~~YG~TE~~~~~~~~ 366 (570)
T 3c5e_A 348 -----LDIRESYGQTETGLTCMVS 366 (570)
T ss_dssp -----CCCEEEEEETTTEEEEECC
T ss_pred -----CchhhccchhhcccceecC
Confidence 3489999999998776543
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.95 E-value=1.2e-26 Score=202.80 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=136.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|..|+.. ++.+++.|+++++.++
T Consensus 159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSS
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCC
Confidence 356799999999999999999999999999999998888899999999999999999999876 8899999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
+ ++..+++.|+++++|+++.+|++++.+.+.... ...+||.+++||+ ++++++.+++.+. +
T Consensus 238 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------~~~~lr~i~~gG~-~l~~~~~~~~~~~----~ 298 (501)
T 3ipl_A 238 F----NAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------EPYNLQKILLGGA-KLSATMIETALQY----N 298 (501)
T ss_dssp C----CHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------SCTTCCEEEECSS-CCCHHHHHHHHHT----T
T ss_pred C----CHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------CcCcccEEEEeCC-CCCHHHHHHHHHh----C
Confidence 4 589999999999999999999999987765311 1127999999998 7999999988763 3
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
..+.+.||+||++..+.
T Consensus 299 ---~~~~~~YG~TE~~~~~~ 315 (501)
T 3ipl_A 299 ---LPIYNSFGMTETCSQFL 315 (501)
T ss_dssp ---CCEEEEEEEGGGTEEEE
T ss_pred ---CCEecccccccccccee
Confidence 34899999999876544
No 22
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.95 E-value=4.6e-27 Score=205.81 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=142.0
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..|+...++.++..|+++++.+.
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (505)
T 3nyq_A 151 GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230 (505)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 45678999999999999999999999999999999988899999999999999999999987668999999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
+ ++..+++.+ ++++|+++.+|++++.+++.+.. . .....+++++|.+++||+ ++++++.+++.+.++
T Consensus 231 ~----~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~---~-~~~~~~l~~lr~i~~gg~-~l~~~~~~~~~~~~~--- 297 (505)
T 3nyq_A 231 F----STEGAAREL-NDGATMLFGVPTMYHRIAETLPA---D-PELAKALAGARLLVSGSA-ALPVHDHERIAAATG--- 297 (505)
T ss_dssp C----CHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG---C-HHHHHHHHHCSEEEECSS-CCCHHHHHHHHHHHS---
T ss_pred C----ChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc---C-chhhcccccceEEEECCC-CCCHHHHHHHHHhcC---
Confidence 4 478889989 88999999999999988765321 0 112246788999999998 799999999999873
Q ss_pred CCccccccccCCCcceeEEeec
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~~ 219 (230)
..+.+.||+||++..+...
T Consensus 298 ---~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 298 ---RRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp ---CCCEEEEEETTTEEEEECC
T ss_pred ---CeeecccchhhcccccccC
Confidence 3589999999998876643
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.95 E-value=8.9e-27 Score=208.53 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=141.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHH-HHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v~~~ 116 (230)
+..++|++||+|||||||.||||+++|+++.+.+......+++.+++++++++|++|.+++.. .++.+++.|+++++.+
T Consensus 180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 345789999999999999999999999999999999888899999999999999999988764 5888999999999986
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
.. ++..+++.++++++|++..+|++++.+++.... .....++++||.+++||+ ++++++.++|.+.++
T Consensus 260 ~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~l~~lr~i~~gGe-~l~~~~~~~~~~~~~-- 327 (617)
T 3rg2_A 260 DP----SATLCFPLIEKHQVNVTALVPPAVSLWLQALIE-----GESRAQLASLKLLQVGGA-RLSATLAARIPAEIG-- 327 (617)
T ss_dssp SC----CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHT-----TCCTTTTTTCCEEEEESS-CCCHHHHHHHHHHTC--
T ss_pred CC----CHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhc-----ccccccCCCccEEEEcCC-cCCHHHHHHHHHHhC--
Confidence 53 588899999999999999999999987765422 122347899999999998 799999999998872
Q ss_pred CCCccccccccCCCcceeEEe
Q psy12986 197 GLSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~ 217 (230)
..+.+.||+||++..+.
T Consensus 328 ----~~~~~~YG~tE~~~~~~ 344 (617)
T 3rg2_A 328 ----CQLQQVFGMAEGLVNYT 344 (617)
T ss_dssp ----SEEEEEEEETTEEEEEC
T ss_pred ----CcEEEEeccCcceeecc
Confidence 45899999999886554
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.95 E-value=5.3e-27 Score=210.04 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=134.8
Q ss_pred CCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCc
Q psy12986 39 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 118 (230)
Q Consensus 39 ~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 118 (230)
..++|++||+|||||||.||||+++|+++.+.+.. ...+++.++|+++.+.|++|+.+++. ++.+++.|+++++.+..
T Consensus 161 ~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 161 FAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSS
T ss_pred CCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccc
Confidence 45789999999999999999999999999876654 44577889999999999999999876 89999999999987432
Q ss_pred hhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCCC
Q psy12986 119 EVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGL 198 (230)
Q Consensus 119 ~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~gl 198 (230)
..+|..+++.|+++++|+++.+|++++.+.+.. ..++++||.+++||+ ++++++.+++.+.+.
T Consensus 239 --~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----------~~~l~~lr~v~~gGe-~l~~~~~~~~~~~~~---- 301 (620)
T 4dg8_A 239 --PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----------PDCLGGLRQLLTGGD-ILSVPHVRRALLRHP---- 301 (620)
T ss_dssp --SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC----------GGGGTTCSEEEEESS-CCCHHHHHHHHHHCT----
T ss_pred --cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC----------hhhCCCccEEEEEeC-cCCHHHHHHHHHhCC----
Confidence 347999999999999999999999999876431 236789999999998 799999998887753
Q ss_pred CccccccccCCCcceeEEe
Q psy12986 199 SPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 199 ~~~~~~~~YG~te~~~~~~ 217 (230)
+..++|.||+||++.++.
T Consensus 302 -~~~l~n~YG~TE~~~~~~ 319 (620)
T 4dg8_A 302 -RLHLVNGYGPTENTTFTC 319 (620)
T ss_dssp -TCEEEEEECCGGGCSCSE
T ss_pred -CeEEEeeEchhhhhhheE
Confidence 346899999999876543
No 25
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.94 E-value=1.3e-26 Score=205.67 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=134.3
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+.. ...+++.++|++++++|++|..+... ++.+++.|+++++.+.
T Consensus 210 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 210 GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSS
T ss_pred CCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCC
Confidence 356899999999999999999999999999766543 34467788999999999999877654 8889999999999865
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
. ..++..+++.|+++++|++..+|++++.+++.. ..++++||.+++||+ ++++++.+++.+.+.
T Consensus 288 ~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------~~~~~~lr~~~~gG~-~l~~~~~~~~~~~~~--- 351 (570)
T 4gr5_A 288 Q--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV----------PEAFEGVRYAITGGE-PASVPHVAKARRDHP--- 351 (570)
T ss_dssp S--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----------GGGGTTCSEEEEESS-CCCHHHHHHHHHHCT---
T ss_pred c--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----------hhhCCCceEEEEecc-cCCHHHHHHHHHhCC---
Confidence 4 347999999999999999999999999877543 225789999999998 799999999998764
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
+..+.+.||+||++.++.
T Consensus 352 --~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 352 --ALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp --TCEEEEEECCGGGCSCSE
T ss_pred --CcEEEEeechhhheeeee
Confidence 245899999999876543
No 26
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.94 E-value=2.9e-26 Score=201.65 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=128.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHH-HHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAV-TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
...++|+++|+|||||||.||||+++|+++ ..........+++.++|++++++|++|+.|+...++.++..|+++++.+
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 346789999999999999999999999999 5554444445678899999999999999998776788999999999874
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhC
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 196 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~ 196 (230)
+ ..++..+++.+.++++|+++.+|++++.+++.. ........+||.+++||+ ++++++.++|.+.|+
T Consensus 259 ~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~gGe-~l~~~~~~~~~~~~g-- 325 (529)
T 2v7b_A 259 E---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSP-------NLPARADVAIRICTSAGE-ALPREIGERFTAHFG-- 325 (529)
T ss_dssp S---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT-------TCCCGGGCCCCEEEECSS-CCCHHHHHHHHHHHS--
T ss_pred C---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc-------ccccccCCceEEEEEcCC-CCCHHHHHHHHHHhC--
Confidence 2 236899999999999999999999998876532 111211237999999998 799999999999883
Q ss_pred CCCccccccccCCCcceeEEee
Q psy12986 197 GLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 197 gl~~~~~~~~YG~te~~~~~~~ 218 (230)
..+.+.||+||++.++..
T Consensus 326 ----~~i~~~YG~TE~~~~~~~ 343 (529)
T 2v7b_A 326 ----CEILDGIGSTEMLHIFLS 343 (529)
T ss_dssp ----CCEEEEEECTTTSSEEEE
T ss_pred ----CceeeeEchhhcCceeec
Confidence 348999999999655443
No 27
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.94 E-value=4.7e-26 Score=195.82 Aligned_cols=160 Identities=11% Similarity=-0.012 Sum_probs=133.3
Q ss_pred CCC-CceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEE
Q psy12986 39 PTA-EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 114 (230)
Q Consensus 39 ~~~-~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 114 (230)
..+ +|+++|+|||||||.||||+++|+++...+..+.. .+++.++|++++.+|+.|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 89999999999999999999999999877665533 45888999999999998877777668889999999998
Q ss_pred eCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhh
Q psy12986 115 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFS 194 (230)
Q Consensus 115 ~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~ 194 (230)
.+.+ ++..+++.|+++++|+++.+|+++..+++.... .....++++||.+++||+ ++++++.++|.+.|+
T Consensus 162 ~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~lr~i~~gGe-~l~~~~~~~~~~~~g 231 (436)
T 3qov_A 162 AAAG----NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQE-----EGIDPRETTLKTLVIGAE-PHTDEQRRKIERMLN 231 (436)
T ss_dssp CCSC----CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHH-----TTCCTTSSSCCEEEEESS-CCCHHHHHHHHHHHT
T ss_pred CCCC----CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----cCCCcccCCccEEEEeCC-cCCHHHHHHHHHHhC
Confidence 7654 588999999999999999999999988765311 111224789999999998 799999999999983
Q ss_pred hCCCCccccccccCCCccee
Q psy12986 195 ALGLSPRAVSTSFGCRVNIA 214 (230)
Q Consensus 195 ~~gl~~~~~~~~YG~te~~~ 214 (230)
..+.+.||+||++.
T Consensus 232 ------~~v~~~YG~TE~~~ 245 (436)
T 3qov_A 232 ------VKAYNSFGMTEMNG 245 (436)
T ss_dssp ------SEEEEEEEEGGGTE
T ss_pred ------ccEEecCcchhhcC
Confidence 34899999999844
No 28
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.94 E-value=6.6e-26 Score=198.97 Aligned_cols=164 Identities=11% Similarity=0.085 Sum_probs=135.8
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHH--cccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
...++|+++|+|||||||.||||+++|+++...+...... +++..+++++...|++|..++.. ++.++..|+++++.
T Consensus 141 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFAL 219 (521)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEEC
T ss_pred CCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEc
Confidence 4567899999999999999999999999999887776665 67778899999999999988765 88899999999988
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhh
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA 195 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~ 195 (230)
+... ..++..+++.+.+++++++..+|++++.+.... .....++++||.+++||+ ++++++.+++.+.|.
T Consensus 220 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~gG~-~l~~~~~~~~~~~~~- 289 (521)
T 3l8c_A 220 PKEL-VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD-------DFCQAKMPALTHFYFDGE-ELTVSTARKLFERFP- 289 (521)
T ss_dssp CGGG-TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST-------TCSTTTCTTCCEEEECSS-CCCHHHHHHHHHHCT-
T ss_pred CHHH-hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh-------ccccccCccceEEEEecc-cCCHHHHHHHHHHCC-
Confidence 6543 457899999999999999999999998765432 233457899999999998 799999999999873
Q ss_pred CCCCccccccccCCCcceeEE
Q psy12986 196 LGLSPRAVSTSFGCRVNIAIC 216 (230)
Q Consensus 196 ~gl~~~~~~~~YG~te~~~~~ 216 (230)
+..+.+.||+||++..+
T Consensus 290 ----~~~i~~~YG~TE~~~~~ 306 (521)
T 3l8c_A 290 ----SAKIINAYGPTEATVAL 306 (521)
T ss_dssp ----TCEEEEEECCGGGSSCS
T ss_pred ----CceEEeCcCccHHhhhh
Confidence 34589999999987643
No 29
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.94 E-value=2.6e-26 Score=215.12 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=140.6
Q ss_pred CCCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH----HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCcee
Q psy12986 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 112 (230)
Q Consensus 37 ~~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 112 (230)
.+..++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++++|++|..|+...++.++..|+++
T Consensus 220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 3457899999999999999999999999999988766543 345778999999999999999877788999999999
Q ss_pred EEeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHH
Q psy12986 113 ILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKL 192 (230)
Q Consensus 113 v~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~ 192 (230)
++.+++ ++..+++.|+++++|++..+|+++..+.+.. .....++++||.+++||+ ++++++.++|.+.
T Consensus 300 v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~~~~gg~-~l~~~~~~~~~~~ 367 (979)
T 3tsy_A 300 LIMPKF----EINLLLELIQRCKVTVAPMVPPIVLAIAKSS-------ETEKYDLSSIRVVKSGAA-PLGKELEDAVNAK 367 (979)
T ss_dssp EECSSC----CHHHHHHHHHHHTCCEEEECHHHHHHHHHCG-------GGGTSCCTTCCEEEESSC-CCCSSHHHHHHHH
T ss_pred EEeCCC----CHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc-------cccCCCccceEEEEEcCC-CCCHHHHHHHHHH
Confidence 998754 5888999999999999999999998876543 334568899999999998 7999999999998
Q ss_pred hhhCCCCccccccccCCCcceeEEe
Q psy12986 193 FSALGLSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 193 ~~~~gl~~~~~~~~YG~te~~~~~~ 217 (230)
|+ +..+.+.||+||++.++.
T Consensus 368 ~~-----~~~l~~~YG~TE~~~~~~ 387 (979)
T 3tsy_A 368 FP-----NAKLGQGYGMTEAGPVLA 387 (979)
T ss_dssp CT-----TCEEEECEECGGGCSEEE
T ss_pred CC-----CCeEEeeechhhhhHHHH
Confidence 74 345899999999987644
No 30
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.94 E-value=4e-26 Score=202.30 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=128.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
+..++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++++|++|+.+++. ++.+++.|+++++.+.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILK 256 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcCh
Confidence 346789999999999999999999999999988888888889999999999999999998864 7889999999998865
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
.. ..++..+++.|+++++|+++.+|+++..+. ..++++||.+++||+ ++++++.++|.+.
T Consensus 257 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~-------------~~~~~~lr~~~~gG~-~l~~~~~~~~~~~----- 316 (563)
T 1amu_A 257 DT-INDFVKFEQYINQKEITVITLPPTYVVHLD-------------PERILSIQTLITAGS-ATSPSLVNKWKEK----- 316 (563)
T ss_dssp HH-HTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------TTTCCSCSEEEEESS-CCCHHHHHHHTTT-----
T ss_pred Hh-hcCHHHHHHHHHHcCCcEEEeCHHHHHHHH-------------hcccccccEEEEEEe-cCCHHHHHHHHhC-----
Confidence 33 357899999999999999999999886521 124678999999998 7999999888764
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
..+.+.||+||++.++.
T Consensus 317 ---~~~~~~YG~TE~~~~~~ 333 (563)
T 1amu_A 317 ---VTYINAYGPTETTICAT 333 (563)
T ss_dssp ---SEEEEEECCGGGSSCSE
T ss_pred ---CeEEEEECcCHHhHhhe
Confidence 24899999999876544
No 31
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.93 E-value=7.4e-26 Score=190.62 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=128.4
Q ss_pred CCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHH---HHcccCCCCeEEEecCC-cCchhHHHHHHHHhhhCceeEE
Q psy12986 39 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSIL 114 (230)
Q Consensus 39 ~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v~ 114 (230)
..++++++|+|||||||.||||+++|+++........ ...++.++|++++.+|+ +|..|+.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 4678999999999999999999999999998877543 45677889999999999 99888876 556688888 555
Q ss_pred eCCchhhcChH-----------------------HHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccce
Q psy12986 115 IPPSEVEVNPA-----------------------LWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVR 171 (230)
Q Consensus 115 ~~~~~~~~~p~-----------------------~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~ 171 (230)
...+ +|. .+++.|+++++|+++.+|+++..+++.. .....++++||
T Consensus 166 ~~~~----dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-------~~~~~~~~~lr 234 (369)
T 3hgu_A 166 SIDI----DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP-------EVVLQMKQSLA 234 (369)
T ss_dssp CCCC----CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH-------HHHHHHHHHCS
T ss_pred CccC----ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh-------hhhccccCCee
Confidence 4432 355 7788999999999999999998865431 22234678999
Q ss_pred eeeeecCCCCChhHHHHHH-HHhhhCCCCccccccccCCCcceeEEeec
Q psy12986 172 TCVVVAEERPRIHLTSAFS-KLFSALGLSPRAVSTSFGCRVNIAICLQL 219 (230)
Q Consensus 172 ~~~~gg~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~YG~te~~~~~~~~ 219 (230)
.+++||+ ++++++.+++. +.|+ +..+.+.||+||++.++...
T Consensus 235 ~i~~gGe-~l~~~~~~~~~~~~~p-----~~~v~~~YG~TE~~~~~~~~ 277 (369)
T 3hgu_A 235 QITLGGT-ELNLDEIKFIASEILP-----DCEFSASYGSTSALGVSRSL 277 (369)
T ss_dssp EEEEESS-CCCHHHHHHHHHHTCT-----TSEEEEEEEEGGGTEEEEEC
T ss_pred EEEECCc-cCCHHHHHHHHHHhCC-----CcEEEcccCchhhhcceecc
Confidence 9999998 79999999999 8873 34689999999998776543
No 32
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.93 E-value=3.4e-25 Score=193.97 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=129.2
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|+.|+.. .+..++.|+..++...
T Consensus 156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIAAK 234 (509)
T ss_dssp CCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSS
T ss_pred CCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEecc
Confidence 456789999999999999999999999999999999888999999999999999999999877 4444455555555543
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
.++..+++.|+++++|+++.+|++++.+++.. ...+++++|.++.||+ + ++.+++.+.|.
T Consensus 235 ----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------~~~~l~~lr~~~~~g~-~---~~~~~~~~~~~--- 294 (509)
T 3ivr_A 235 ----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------APAQLASLRAVTGLDT-P---ETIERFEATCP--- 294 (509)
T ss_dssp ----CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---------CGGGGTTCCEEEEECC-H---HHHHHHHHHCT---
T ss_pred ----cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---------cccchhhhheecccCC-h---HHHHHHHHhcC---
Confidence 36899999999999999999999999877643 2346789999988776 4 88888888763
Q ss_pred CCccccccccCCCcceeEEee
Q psy12986 198 LSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~~ 218 (230)
+..+.+.||+||++.++..
T Consensus 295 --~~~~~~~YG~TE~~~~~~~ 313 (509)
T 3ivr_A 295 --NATFWATFGQSETSGLSTF 313 (509)
T ss_dssp --TCEEEEEEEEGGGTEEEEE
T ss_pred --CCeEEcccCcccccccccc
Confidence 3468999999999876554
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.93 E-value=6.9e-25 Score=188.59 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=129.8
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHH---HHcccCCCCeEEEecCC-cCchhHHHHHHHHhhhCceeE
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSI 113 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 113 (230)
...++++++|+|||||||.||||+++|+++...+.... ..+++.++|++++.+|+ +|..++.. .+.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEE
Confidence 34678999999999999999999999999987665443 35788899999999998 56655544 788899999999
Q ss_pred EeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCC--CCccceeeeeecCCCCChhHHHHHHH
Q psy12986 114 LIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNI--ALGCVRTCVVVAEERPRIHLTSAFSK 191 (230)
Q Consensus 114 ~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~l~sl~~~~~gg~~~~~~~~~~~~~~ 191 (230)
+.+.+ ++..+++.|+++++|+++.+|+++..+.+... .... ++++||.+++||+ ++++++.+++.+
T Consensus 165 ~~~~~----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------~~~~~~~~~~lr~i~~gGe-~l~~~~~~~~~~ 232 (437)
T 2y27_A 165 PFGGG----QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIE-------RQGLDPVQSSLRIGIFGAE-PWTNDMRVAIEQ 232 (437)
T ss_dssp CCCSC----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-------HTTCCGGGSSCCEEEEESS-CCCHHHHHHHHH
T ss_pred eCCCC----CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHH-------HcCCCcccCCeeEEEEcCc-cCCHHHHHHHHH
Confidence 87654 58899999999999999999999988776531 1122 3578999999998 799999999999
Q ss_pred HhhhCCCCccccccccCCCcc-ee
Q psy12986 192 LFSALGLSPRAVSTSFGCRVN-IA 214 (230)
Q Consensus 192 ~~~~~gl~~~~~~~~YG~te~-~~ 214 (230)
.|+ ..+.+.||+||+ +.
T Consensus 233 ~~g------~~v~~~YG~TE~~g~ 250 (437)
T 2y27_A 233 RMG------IDAVDIYGLSEVMGP 250 (437)
T ss_dssp HHT------SEEEEEEEETTTTEE
T ss_pred HHC------cCEEecCCchhhcCC
Confidence 883 348999999997 44
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.92 E-value=1.1e-24 Score=187.60 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=128.5
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCc-CchhHHHHHHHHhhhCceeE
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPY-CGLGFALWVLSSVYSGHHSI 113 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~-~~~g~~~~~~~~l~~G~~~v 113 (230)
...++++++|+|||||||.||||+++|+++...+..... .+++.++|+++..+|+. |..++. ..+.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEE
Confidence 346789999999999999999999999999876554433 57888999999999984 555544 4788899999999
Q ss_pred EeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCC--CCccceeeeeecCCCCChhHHHHHHH
Q psy12986 114 LIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNI--ALGCVRTCVVVAEERPRIHLTSAFSK 191 (230)
Q Consensus 114 ~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~l~sl~~~~~gg~~~~~~~~~~~~~~ 191 (230)
+.+.+ ++..+++.|+++++|+++.+|+++..+++... .... ++++||.+++||+ ++++++.+++.+
T Consensus 167 ~~~~~----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------~~~~~~~~~~lr~i~~gGe-~l~~~~~~~~~~ 234 (443)
T 2y4o_A 167 PMSGG----QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMV-------RQGMDPAESSLKIGIFGAE-PWTQALRNEVET 234 (443)
T ss_dssp CCCSC----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-------HTTCCGGGSSCCEEEEESS-CCCHHHHHHHHH
T ss_pred ECCCC----CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHH-------HcCCCcccCCceEEEECCC-cCCHHHHHHHHH
Confidence 87654 58899999999999999999999988776431 1122 3578999999998 799999999999
Q ss_pred HhhhCCCCccccccccCCCcc
Q psy12986 192 LFSALGLSPRAVSTSFGCRVN 212 (230)
Q Consensus 192 ~~~~~gl~~~~~~~~YG~te~ 212 (230)
.|+ ..+.+.||+||+
T Consensus 235 ~~g------~~v~~~YG~TE~ 249 (443)
T 2y4o_A 235 RVG------IDALDIYGLSEV 249 (443)
T ss_dssp HHT------CEEEEEEEETTT
T ss_pred HhC------cCEEeccCchhh
Confidence 883 348999999997
No 35
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.92 E-value=2.9e-25 Score=213.13 Aligned_cols=161 Identities=13% Similarity=0.076 Sum_probs=135.7
Q ss_pred CCCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 38 ~~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
...+++++||+|||||||.||||+++|+++.+. ......+++.++|+++.+.|++|+.+.+. ++.+++.|+++++.++
T Consensus 603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADE 680 (1304)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCG
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECCh
Confidence 456889999999999999999999999999865 33444577889999999999999988765 8999999999999875
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHHHHhhhCC
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 197 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~~~~~~~g 197 (230)
.. ..+|..+++.|.++++|+++++|++++.+.+.. ...+++||.+++||+ ++++++.++|.+.++.
T Consensus 681 ~~-~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~----------~~~~~~lr~~~~gGe-~l~~~~~~~~~~~~~~-- 746 (1304)
T 2vsq_A 681 HT-LLDTERLTDLILQENVNVMFATTALFNLLTDAG----------EDWMKGLRCILFGGE-RASVPHVRKALRIMGP-- 746 (1304)
T ss_dssp GG-TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----------SHHHHTCSEEEEESS-CCCHHHHHHHHHHHCT--
T ss_pred hh-cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc----------hhcCCCccEEEEecC-CCCHHHHHHHHHhCCC--
Confidence 43 457999999999999999999999999876431 124678999999998 7999999999988742
Q ss_pred CCccccccccCCCcceeEEe
Q psy12986 198 LSPRAVSTSFGCRVNIAICL 217 (230)
Q Consensus 198 l~~~~~~~~YG~te~~~~~~ 217 (230)
..+.|.||+||++..+.
T Consensus 747 ---~~l~n~YG~TE~~~~~~ 763 (1304)
T 2vsq_A 747 ---GKLINCYGPTEGTVFAT 763 (1304)
T ss_dssp ---TCEEEEECCGGGSSCSE
T ss_pred ---CEEEEeEChhHHhHHhe
Confidence 35899999999887544
No 36
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.92 E-value=2e-24 Score=191.18 Aligned_cols=158 Identities=11% Similarity=0.002 Sum_probs=126.4
Q ss_pred CCCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHHH--------cccCCCCeEEEecCCcCchhHHHHHHHHhhhCc
Q psy12986 39 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--------CELYPSRHIALCLDPYCGLGFALWVLSSVYSGH 110 (230)
Q Consensus 39 ~~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 110 (230)
..++++++|+|||||||.||||+++|+++...+..+... +.+...+++++..|++|..++.. ++.++..|+
T Consensus 172 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~ 250 (562)
T 3ite_A 172 YPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLAWRFGL 250 (562)
T ss_dssp CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHHHHTTC
T ss_pred CCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHHHhccc
Confidence 356789999999999999999999999999887665543 34677889999999999988765 788999999
Q ss_pred eeEEeCCchhhcChHHHHHHHhhcceeEEEechhhHHHHHhhcCCCcccccccCCCCccceeeeeecCCCCChhHHHHHH
Q psy12986 111 HSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFS 190 (230)
Q Consensus 111 ~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~sl~~~~~gg~~~~~~~~~~~~~ 190 (230)
++++.+... .+..+++.++++++|+++.+|++++.+. ....++++||.+++||+ ++++++.++|.
T Consensus 251 ~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~~~-----------~~~~~~~~lr~~~~gG~-~l~~~~~~~~~ 315 (562)
T 3ite_A 251 CAVTGERLS---MLDDLPRTFRELGVTHAGIVPSLLDQTG-----------LVPEDAPHLVYLGVGGE-KMTPRTQQIWS 315 (562)
T ss_dssp EEEECCHHH---HHHSHHHHHHHTTCCEEEECHHHHHHHT-----------CCGGGSTTCCEEEEESS-CCCHHHHHHHT
T ss_pred EEEecchhh---CHHHHHHHHHHcCCCEEEcCHHHHhhcc-----------cCccccCceEEEEEecC-CCCHHHHHHHh
Confidence 999876543 2466889999999999999999887642 22347889999999998 79999999988
Q ss_pred HHhhhCCCCccccccccCCCcceeEEee
Q psy12986 191 KLFSALGLSPRAVSTSFGCRVNIAICLQ 218 (230)
Q Consensus 191 ~~~~~~gl~~~~~~~~YG~te~~~~~~~ 218 (230)
+.+ +..+.+.||+||++..+..
T Consensus 316 ~~~------~~~~~~~YG~TE~~~~~~~ 337 (562)
T 3ite_A 316 SSD------RVALVNVYGPTEVTIGCSA 337 (562)
T ss_dssp TCS------SCEEEEEECCGGGCSCSEE
T ss_pred hCC------CcEEEEeeccchheeeeee
Confidence 765 2458999999998765443
No 37
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=80.59 E-value=15 Score=31.60 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=70.2
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
++.++.+.+..+.++ ..+|.+.+...+..+.. ..++.++|++...+|-.. .++..+++++..|+..+.+.+
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc--cHHHHHHHHHHcCCEEeecCC
Confidence 344554444444333 46899988876655443 468889999999887544 455558899999998888765
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHH
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELC 149 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~ 149 (230)
.. .+.++..+++..+++.++........+
T Consensus 108 ~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 108 IY---NERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp TC---CHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred cC---CHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 43 477888899999999988876655443
No 38
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.82 E-value=29 Score=29.37 Aligned_cols=94 Identities=6% Similarity=0.027 Sum_probs=69.2
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
|+.++++. .+-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+++
T Consensus 20 pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 20 PDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC--SEMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp TTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEEecCC
Confidence 56666553 1356899988877655443 46788999999888754 4556668889999999888866
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHH
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMEL 148 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~ 148 (230)
.. .+.++..++++.++..++........
T Consensus 89 ~~---~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RL---NADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TS---CHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CC---CHHHHHHHHHhcCceEEEECcchhhh
Confidence 43 46788889999999998887665544
No 39
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.88 E-value=37 Score=29.00 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.++.++++. +.+| -.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSS--PEFVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCEEeccC
Confidence 356666553 2222 46899988876555443 46888999999888754 445666889999999888876
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHH
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMEL 148 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~ 148 (230)
+.. .+.++..+++..++..++......+.
T Consensus 106 ~~~---~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 106 PFS---TPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TTC---CHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCC---CHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 543 47788889999999988877654443
No 40
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=70.89 E-value=31 Score=25.91 Aligned_cols=55 Identities=5% Similarity=-0.059 Sum_probs=38.4
Q ss_pred CeEEEe-cC-CcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEEEe
Q psy12986 84 RHIALC-LD-PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 141 (230)
Q Consensus 84 ~~~l~~-~p-l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~ 141 (230)
.+++.. .+ =.|+.|....-...-..|..++.+.... .+..+.+.+.++++..+.+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v---p~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV---LNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC---CHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCC---CHHHHHHHHHHcCCCEEEE
Confidence 344443 33 4688887664444556799998886532 4788999999999987766
No 41
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=69.14 E-value=46 Score=28.55 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=62.9
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
..+|.+.+...+..+.. ..++.++|++...+|-.. .+...+++++..|+..+.+.+.. .+.++..+++..++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~la~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~ 125 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCE--EFFIPVIAGLFIGVGVAPTNEIY---TLRELVHSLGISKP 125 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHHCC
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhhCCEEeccCCCC---CHHHHHHHHHhcCC
Confidence 46899988876655443 468889999998887543 34555888999999999887643 47788889999999
Q ss_pred eEEEechhhHHH
Q psy12986 137 RDTFCSYGVMEL 148 (230)
Q Consensus 137 t~~~~~p~~~~~ 148 (230)
..++..+.....
T Consensus 126 ~~vi~~~~~~~~ 137 (548)
T 2d1s_A 126 TIVFSSKKGLDK 137 (548)
T ss_dssp SEEEECTTTHHH
T ss_pred eEEEEcHHHHHH
Confidence 988887655443
No 42
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=69.12 E-value=49 Score=27.51 Aligned_cols=106 Identities=9% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCCceEEEEEcc--CCCCCceeeeccHHHHHHHHHHHHHH---cccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEE
Q psy12986 40 TAEMLAYLDFSV--STTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 114 (230)
Q Consensus 40 ~~~~~~~i~~TS--GtTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 114 (230)
.++.++++.... +.+| ....+|.+.+...+..+... .+. ++|++..+++-. ..++..+++.+..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG--LEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCc--HHHHHHHHHHHHhCcEEEe
Confidence 356777665442 2223 33678999988876665543 454 789988887644 4566668899999999888
Q ss_pred eCCchhhcChHHHHHHHhhcceeEEEechhhHHHHH
Q psy12986 115 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCT 150 (230)
Q Consensus 115 ~~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~~ 150 (230)
+.+......+.++..++++.++..++........+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 865221122456778899999998888766655443
No 43
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=68.40 E-value=53 Score=28.34 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---Hc-ccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---AC-ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~-~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
.++.++++... + .| ....+|.+.+...+..+.. .. ++.++|++...+|-. ..++..+++++..|+..+.+
T Consensus 56 ~p~~~al~~~~-~-~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVN-G-KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV--PEWWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEEC-S-SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC--HHHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEc-C-CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCeEEEec
Confidence 35666655432 1 12 2357899988876655443 34 888999998888744 45566688999999988887
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechhhHHH
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYGVMEL 148 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~ 148 (230)
.+.. .+.++..+++..++..++..+.....
T Consensus 130 ~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~ 159 (570)
T 3c5e_A 130 TIQM---KSTDILYRLQMSKAKAIVAGDEVIQE 159 (570)
T ss_dssp CTTC---CHHHHHHHHHHHTCSEEEEETTTHHH
T ss_pred CCCC---CHHHHHHHHHhcCCeEEEechHHHHH
Confidence 6532 46788889999999988887655544
No 44
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=67.45 E-value=57 Score=27.66 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=62.3
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...+|-.. .++..+++++..|+..+.+.+.. .+.++..++++.++
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~ 121 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTV--ALPVAFLGALYAGVVPVVANTLL---TPADYVYMLTHSHA 121 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSST--HHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHcCceEEecCccc---CHHHHHHHHhccCC
Confidence 35899988876655443 467889999998887543 45555888999999888776542 47788889999999
Q ss_pred eEEEechhhHHH
Q psy12986 137 RDTFCSYGVMEL 148 (230)
Q Consensus 137 t~~~~~p~~~~~ 148 (230)
..++..+.....
T Consensus 122 ~~vi~~~~~~~~ 133 (529)
T 2v7b_A 122 RAVIASGALVQN 133 (529)
T ss_dssp SEEEEEGGGHHH
T ss_pred eEEEechhhhhH
Confidence 888887655443
No 45
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=67.29 E-value=59 Score=27.76 Aligned_cols=85 Identities=11% Similarity=-0.068 Sum_probs=63.8
Q ss_pred eeeccHHHHHHHHHHHH---HHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcc
Q psy12986 59 GIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 135 (230)
Q Consensus 59 gV~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~ 135 (230)
+-.+|.+.+...+..+. ...++.++|++...+|-. ..++..+++.+..|+..+.+.+.. .+.++..+++..+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~ 119 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH--FRHLEAYFAVPGMGAVLHTANPRL---SPKEIAYILNHAE 119 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHT
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEEecCccc---CHHHHHHHHHhCC
Confidence 45689998887655444 356888999999888744 455666888999999988887643 4678888999999
Q ss_pred eeEEEechhhHHH
Q psy12986 136 VRDTFCSYGVMEL 148 (230)
Q Consensus 136 it~~~~~p~~~~~ 148 (230)
+..++..+.....
T Consensus 120 ~~~vi~~~~~~~~ 132 (541)
T 1v25_A 120 DKVLLFDPNLLPL 132 (541)
T ss_dssp CSEEEECGGGHHH
T ss_pred CcEEEEChhHHHH
Confidence 9998887665543
No 46
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.24 E-value=60 Score=27.87 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=69.6
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.++.++++... + -.+-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++++..|+..+.+.
T Consensus 24 ~p~~~a~~~~~-~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 24 SPNKKSCTFLN-K----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG--LPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp CTTSEEEEEEE-T----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEEc-C----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHHhCcEEEEec
Confidence 35667765443 1 13457899988876655443 46788999999888744 445666889999999988887
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhHHH
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMEL 148 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~ 148 (230)
+.........+..+++..++..++........
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~ 128 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK 128 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH
Confidence 64211124567778888888888877655544
No 47
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=65.95 E-value=64 Score=27.72 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=59.9
Q ss_pred eccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhccee
Q psy12986 61 KMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 137 (230)
Q Consensus 61 ~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it 137 (230)
.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+.+.. .+.++..+++..++.
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~ 174 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERG--FDMVVALLAVLKAGGGYTMLDPQF---PVERLALSLEDTGAP 174 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTCS
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHHCCEEEEcCCCC---hHHHHHHHHHhcCCC
Confidence 5899988876655443 46888999999888744 455666889999999888886643 477888899999998
Q ss_pred EEEechh
Q psy12986 138 DTFCSYG 144 (230)
Q Consensus 138 ~~~~~p~ 144 (230)
.++....
T Consensus 175 ~~i~~~~ 181 (570)
T 4gr5_A 175 LLVTSRP 181 (570)
T ss_dssp EEEECTT
T ss_pred EEEecch
Confidence 8877543
No 48
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=64.48 E-value=64 Score=27.17 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
..+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+++.. .+.++..++++.++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~ 102 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNS--ADVVIAILALHRLGAVPALLNPRL---KSAELAELIKRGEM 102 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHTTC
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEecCCcc---ChHHHHHHHhhcCC
Confidence 56899988876555443 46788999999888744 455666889999999999887643 46778888999999
Q ss_pred eEEEe--chhhHHH
Q psy12986 137 RDTFC--SYGVMEL 148 (230)
Q Consensus 137 t~~~~--~p~~~~~ 148 (230)
+.++. .......
T Consensus 103 ~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 103 TAAVIAVGRQVADA 116 (504)
T ss_dssp SEEEECC--CHHHH
T ss_pred cEEEEecchhhhhh
Confidence 88877 5444433
No 49
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=64.47 E-value=67 Score=27.42 Aligned_cols=103 Identities=8% Similarity=0.068 Sum_probs=70.9
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
++.++++....+..+ -..-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+++
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEccCC
Confidence 566776554321111 11246889888876555443 46888999999888754 4456668899999999888866
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhhHHHH
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELC 149 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~~~~~ 149 (230)
.. .+.++..++++.+++.++........+
T Consensus 110 ~~---~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 110 MY---KSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TC---CHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CC---CHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 43 467888899999999888876655443
No 50
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=63.94 E-value=71 Score=27.49 Aligned_cols=84 Identities=6% Similarity=0.051 Sum_probs=62.6
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+.+.. .+.++..+++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~il~~~~~ 137 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKS--IDLFIGILAVLKAGGAYVPIDIEY---PKERIQYILDDSQA 137 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTC
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEEeCCCC---cHHHHHHHHHhcCC
Confidence 36899988776555443 46888999998888744 455666888999999888886543 46788889999999
Q ss_pred eEEEechhhHHH
Q psy12986 137 RDTFCSYGVMEL 148 (230)
Q Consensus 137 t~~~~~p~~~~~ 148 (230)
..++..+.....
T Consensus 138 ~~li~~~~~~~~ 149 (563)
T 1amu_A 138 RMLLTQKHLVHL 149 (563)
T ss_dssp SEEEECGGGHHH
T ss_pred CEEEEcCchhhh
Confidence 988887655443
No 51
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=62.42 E-value=63 Score=27.26 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=60.4
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+++.. .+.++..++++.++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~~---~~~~l~~il~~~~~ 101 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS--VEALVLYLATVRAGGVYLPLNTAY---TLHELDYFITDAEP 101 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTC---CHHHHHHHHHHHCC
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEEecCCCC---CHHHHHHHHHhcCC
Confidence 35899988876655443 46888999999888754 455666889999999888876543 46778889999999
Q ss_pred eEEEechh
Q psy12986 137 RDTFCSYG 144 (230)
Q Consensus 137 t~~~~~p~ 144 (230)
..++..+.
T Consensus 102 ~~vi~~~~ 109 (503)
T 4fuq_A 102 KIVVCDPS 109 (503)
T ss_dssp SEEEECGG
T ss_pred cEEEECch
Confidence 88887654
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=60.69 E-value=77 Score=26.83 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.++.++++.. | +...+|.+.+...+..+.. ..++.++|++..++|-. ..++..+++.+..|+..+.++
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNS--VEFCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCC--HHHHHHHHHHHHhCcEEEecC
Confidence 3566665542 1 2346899988876655443 46888999999888744 455666889999999988886
Q ss_pred CchhhcChHHHHHHHhhcceeEEEechhhH
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSYGVM 146 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p~~~ 146 (230)
+.. .+.++..++++.++..++......
T Consensus 100 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 100 TRL---AAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TTS---CHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccc---CHHHHHHHHHhcCceEEEECCchH
Confidence 543 467788889999998888765443
No 53
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=60.38 E-value=98 Score=28.70 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
++.++++. +.+ +-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..++..+..|+..+.+.+
T Consensus 75 pd~~Al~~---~~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 75 ATKPCLIN---GPT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTSEEEEE---TTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCeEEEE---CCC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEeeCC
Confidence 56677653 222 246899888876555443 46888999999888754 4566668999999999998876
Q ss_pred chhhcChHHHHHHHhhcceeEEEechhh
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSYGV 145 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p~~ 145 (230)
.. .+.++..++++.++..++.....
T Consensus 146 ~~---~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 146 FF---TPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp TS---CHHHHHHHHHHHTEEEEEECSTT
T ss_pred CC---CHHHHHHHHHHcCCeEEEEChHH
Confidence 43 47788889999999988876543
No 54
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=59.76 E-value=82 Score=26.86 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=64.6
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.++.++++. .+-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+.
T Consensus 43 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~Gav~vpl~ 111 (544)
T 3o83_A 43 HPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNV--AEFYIVFFALLKAGVVVLNAL 111 (544)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSS--HHHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--HHHHHHHHHHHHhCcEEecCC
Confidence 356777653 1346899988876555443 46888999999888644 455666888999999877665
Q ss_pred CchhhcChHHHHHHHhhcceeEEEech
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSY 143 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p 143 (230)
+. ..+.++..++++.++..++...
T Consensus 112 ~~---~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 112 YS---HRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TT---CCHHHHHHHHHHHCCSEEEEET
T ss_pred CC---CCHHHHHHHHHhcCeeEEEEcc
Confidence 43 2467788889999998887654
No 55
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=58.71 E-value=2.1 Score=37.89 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=25.3
Q ss_pred CCCceEEEEEccCCC-CCceeeeccHHHHHH
Q psy12986 40 TAEMLAYLDFSVSTT-GMLAGIKMSHAAVTS 69 (230)
Q Consensus 40 ~~~~~~~i~~TSGtT-G~PKgV~~th~~l~~ 69 (230)
.++.+.++.-||||| |+||-+.+|...+-.
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 456677999999999 889999999987654
No 56
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=57.66 E-value=70 Score=27.01 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=58.8
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...++-. ..++..+++++..|+..+.+.+.. .+.++..+++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~vpl~~~~---~~~~l~~il~~~~~ 102 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT--YDMLATFVALTKSGHAYIPVDVHS---APERILAIIEIAKP 102 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSS--HHHHHHHHHHHHTTCCEEEEETTS---CHHHHHHHHHHSCC
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEecCccc---cHHHHHHHHHhCCC
Confidence 35899988876655443 46788999998888744 455666888999999888886543 47788889999999
Q ss_pred eEEEec
Q psy12986 137 RDTFCS 142 (230)
Q Consensus 137 t~~~~~ 142 (230)
..++..
T Consensus 103 ~~ii~~ 108 (521)
T 3l8c_A 103 SLIIAI 108 (521)
T ss_dssp SEEEES
T ss_pred CEEEec
Confidence 888764
No 57
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=57.63 E-value=94 Score=26.85 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=67.8
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHH---HHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeC
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 116 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 116 (230)
.++.++++.... .| ....+|.+.+...+..+. ...++.++|++..++|-.. .++..+++.+..|+..+-+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~--e~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY--DFWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT--HHHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCEEEEeCC
Confidence 367777665432 12 245789988877655443 3568899999999887553 45666888999999888776
Q ss_pred CchhhcChHHHHHHHhhcceeEEEech
Q psy12986 117 PSEVEVNPALWLSAVSQYRVRDTFCSY 143 (230)
Q Consensus 117 ~~~~~~~p~~~~~~i~~~~it~~~~~p 143 (230)
+.. .+.++...+++.++..++...
T Consensus 143 ~~~---~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HML---KTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TTC---CHHHHHHHHHHHTCCEEEEES
T ss_pred ccC---CHHHHHHHHHhcCCCEEEEec
Confidence 532 477888899999998887653
No 58
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=57.01 E-value=80 Score=26.46 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=59.3
Q ss_pred eeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEE
Q psy12986 60 IKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDT 139 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~ 139 (230)
-.+|.+.+...+..+...+.-.++|++...+|-. ..++..+++++..|+..+.+.+.. .+.++..+++..+++.+
T Consensus 25 ~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~~~l 99 (501)
T 3ipl_A 25 ESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNS--IQSIILIHACWLANIEIAMINTRL---TPNEMTNQMRSIDVQLI 99 (501)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHTTCCEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHHHcCCEEEecCccC---CHHHHHHHHHhcCCCEE
Confidence 3689999988777666654333789998888744 455666889999999988886532 47788889999999888
Q ss_pred Eec
Q psy12986 140 FCS 142 (230)
Q Consensus 140 ~~~ 142 (230)
+..
T Consensus 100 i~~ 102 (501)
T 3ipl_A 100 FCT 102 (501)
T ss_dssp EES
T ss_pred EEc
Confidence 765
No 59
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=55.69 E-value=96 Score=26.38 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=58.9
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++.+..|+..+.+.+. ..+.++..+++..++
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~---~~~~~l~~~l~~~~~ 123 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI--KEFFEVIFALFRLGALPVFALPS---HRSSEITYFCEFAEA 123 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSS--HHHHHHHHHHHHHTCEEEECCTT---CCHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHcCeEEecCCCC---CCHHHHHHHHHhCCC
Confidence 46899988876555443 46788999999888744 45566688899999988877653 246778888999999
Q ss_pred eEEEech
Q psy12986 137 RDTFCSY 143 (230)
Q Consensus 137 t~~~~~p 143 (230)
..++...
T Consensus 124 ~~vi~~~ 130 (539)
T 1mdb_A 124 AAYIIPD 130 (539)
T ss_dssp SEEEEES
T ss_pred CEEEecc
Confidence 8887654
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=53.74 E-value=1.2e+02 Score=26.72 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=66.5
Q ss_pred CCceEEEEEccCCCCCceeeeccHHHHHHHHHHHH---HHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCC
Q psy12986 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 117 (230)
Q Consensus 41 ~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 117 (230)
++.++++.. +..+| .+-.+|.+.+...+..+. ...++.++|++...+|-.. .++..+++++..|+..+.+.+
T Consensus 90 pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP--EAAVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp TTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHcCcEEEecCC
Confidence 566666543 22222 235689998887655444 3568889999999988654 455568889999998887765
Q ss_pred chhhcChHHHHHHHhhcceeEEEech
Q psy12986 118 SEVEVNPALWLSAVSQYRVRDTFCSY 143 (230)
Q Consensus 118 ~~~~~~p~~~~~~i~~~~it~~~~~p 143 (230)
. ..+.++...+++.++..++...
T Consensus 165 ~---~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 G---FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp T---SCHHHHHHHHHHHTCSEEEEES
T ss_pred C---CCHHHHHHHHHhcCCCEEEEcC
Confidence 3 2477888899999988877653
No 61
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=52.91 E-value=1.2e+02 Score=26.71 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=67.7
Q ss_pred CCCceEEEEEccCCCCCceeeeccHHHHHHHHHHHH---H-HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEe
Q psy12986 40 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---L-ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 115 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PKgV~~th~~l~~~~~~~~---~-~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 115 (230)
.++.++++.. +..+| .+..+|.+.+...+..+. . ..++.++|++...+|..- .++..+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~--e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP--EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEee
Confidence 3566666543 22222 234689988877655443 3 567889999999988654 4555588889999988877
Q ss_pred CCchhhcChHHHHHHHhhcceeEEEechh
Q psy12986 116 PPSEVEVNPALWLSAVSQYRVRDTFCSYG 144 (230)
Q Consensus 116 ~~~~~~~~p~~~~~~i~~~~it~~~~~p~ 144 (230)
.+. ..+..+...+++.++..++....
T Consensus 170 ~~~---~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAG---FSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEEccc
Confidence 653 24778888999999988887543
No 62
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=50.15 E-value=8 Score=34.00 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCC-CCceeeeccHHHHHH
Q psy12986 41 AEMLAYLDFSVSTT-GMLAGIKMSHAAVTS 69 (230)
Q Consensus 41 ~~~~~~i~~TSGtT-G~PKgV~~th~~l~~ 69 (230)
++-+.+..-||||| |++|-+.+|...+-.
T Consensus 97 ~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 97 GHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 45567899999999 889999999987654
No 63
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=47.86 E-value=5.8 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCC-CCceeeeccHHHHHH
Q psy12986 41 AEMLAYLDFSVSTT-GMLAGIKMSHAAVTS 69 (230)
Q Consensus 41 ~~~~~~i~~TSGtT-G~PKgV~~th~~l~~ 69 (230)
++-+.+..-||||| |.+|-+.+|...+-.
T Consensus 92 ~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 92 ARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 44556899999999 789999999987654
No 64
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=47.13 E-value=1.3e+02 Score=25.30 Aligned_cols=77 Identities=10% Similarity=-0.023 Sum_probs=57.3
Q ss_pred eccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhccee
Q psy12986 61 KMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 137 (230)
Q Consensus 61 ~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it 137 (230)
.+|.+.+...+..+.. ..+..++|++...++-. ..++..+++++..|+..+.+.+.. .+.++..+++..++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~--~e~~~~~la~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~ 100 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQ--PEMIINFLGCVKAGHAYIPVDLSI---PADRVQRIAENSGAK 100 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSC--HHHHHHHHHHHHTTCCEEEEETTS---CHHHHHHHHHHSCCC
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEeeCCCC---cHHHHHHHHHhcCCC
Confidence 5899988876655443 45778899998887654 345666889999999888886543 467788889999988
Q ss_pred EEEec
Q psy12986 138 DTFCS 142 (230)
Q Consensus 138 ~~~~~ 142 (230)
.++..
T Consensus 101 ~~i~~ 105 (512)
T 3fce_A 101 LLLSA 105 (512)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 77654
No 65
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=46.81 E-value=1.4e+02 Score=25.96 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=58.3
Q ss_pred eeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+.. ..++.++|++...++-. ..++..++..+..|+..+.+.+.. .+..+..++++.++
T Consensus 49 ~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s--~~~vva~lA~l~aG~~~vpl~~~~---~~~~l~~~l~~~~~ 123 (617)
T 3rg2_A 49 RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNV--AELYITFFALLKLGVAPVLALFSH---QRSELNAYASQIEP 123 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEEECTTC---CHHHHHHHHHHHCC
T ss_pred ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc--HHHHHHHHHHHhcCeEEccCCccc---cHHHHHHHHhhcCc
Confidence 45899988876655443 46888999999888744 455666899999999888776532 46677788888888
Q ss_pred eEEEech
Q psy12986 137 RDTFCSY 143 (230)
Q Consensus 137 t~~~~~p 143 (230)
..+....
T Consensus 124 ~~vl~~~ 130 (617)
T 3rg2_A 124 ALLIADR 130 (617)
T ss_dssp SEEEEET
T ss_pred eEEEecc
Confidence 8877653
No 66
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=39.04 E-value=2e+02 Score=25.12 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=57.2
Q ss_pred eccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhccee
Q psy12986 61 KMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 137 (230)
Q Consensus 61 ~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it 137 (230)
.+|.+.+...+..+.. ..+..+++++..+++-. ..++..++..+..|+..+.+++.. .+..+..++++.++.
T Consensus 52 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s--~~~vva~lailkaGa~~vpld~~~---p~~~l~~il~~~~~~ 126 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYS--RESITCLLAILLSGHHYLYIDLKQ---PAAWNAELCRQVDCR 126 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSC--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTEE
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEeeCccC---hHHHHHHHHHhCCCc
Confidence 5899988776555443 46788999998888744 455666889999999888876543 356777788888988
Q ss_pred EEEec
Q psy12986 138 DTFCS 142 (230)
Q Consensus 138 ~~~~~ 142 (230)
.+...
T Consensus 127 ~vl~~ 131 (620)
T 4dg8_A 127 LILDC 131 (620)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87743
No 67
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=37.96 E-value=1.3e+02 Score=22.94 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=37.8
Q ss_pred CeEEEe-cC-CcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 84 RHIALC-LD-PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 84 ~~~l~~-~p-l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
.+++.. .+ =.|+.|....-...-..|..++.+... ..+..+.+.+.++++..+.+.
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~---vp~e~l~~~~~~~~~d~V~lS 181 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD---VPAEEVLAAVQKEKPIMLTGT 181 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE---CCSHHHHHHHHHHCCSEEEEE
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEE
Confidence 344444 33 578888765344444668988877543 247889999999999877654
No 68
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.13 E-value=1.2e+02 Score=22.18 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=37.4
Q ss_pred eEEEecC-CcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 85 HIALCLD-PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 85 ~~l~~~p-l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
+++...+ =.|..|........-..|..++.+.... .++.+.+.+.++++..+.+.
T Consensus 91 vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~v---p~~~l~~~~~~~~~d~v~lS 146 (210)
T 1y80_A 91 IVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDI---EPGKFVEAVKKYQPDIVGMS 146 (210)
T ss_dssp EEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSB---CHHHHHHHHHHHCCSEEEEE
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEe
Confidence 3444444 5788887653333345688888876532 47889999999999777654
No 69
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=31.49 E-value=1.4e+02 Score=21.05 Aligned_cols=48 Identities=15% Similarity=-0.044 Sum_probs=33.5
Q ss_pred CcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 92 PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 92 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
=.|..|........-..|..++.+.... .++.+.+.+.++++..+.+.
T Consensus 29 d~HdiG~~~va~~l~~~G~eVi~lG~~~---p~e~lv~aa~~~~~diV~lS 76 (161)
T 2yxb_A 29 DGHDRGAKVVARALRDAGFEVVYTGLRQ---TPEQVAMAAVQEDVDVIGVS 76 (161)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEECCCSBC---CHHHHHHHHHHTTCSEEEEE
T ss_pred CccHHHHHHHHHHHHHCCCEEEECCCCC---CHHHHHHHHHhcCCCEEEEE
Confidence 5678887653333334688888776432 47889999999999877654
No 70
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=31.15 E-value=2.4e+02 Score=23.83 Aligned_cols=88 Identities=9% Similarity=0.037 Sum_probs=61.8
Q ss_pred eeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcC----hHHHHHHH
Q psy12986 59 GIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVN----PALWLSAV 131 (230)
Q Consensus 59 gV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----p~~~~~~i 131 (230)
+-.+|.+.+...+..+.. ..++.++|++...+|-. ..++..+++++..|+..+.+.+..-..+ +.++..++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS--SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 357899988876655443 46788999999888754 4556668899999998888764321001 45677788
Q ss_pred hhcceeEEEechhhHHH
Q psy12986 132 SQYRVRDTFCSYGVMEL 148 (230)
Q Consensus 132 ~~~~it~~~~~p~~~~~ 148 (230)
+..++..++........
T Consensus 125 ~~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHHCCSEEEECGGGHHH
T ss_pred HhcCCCEEEecHHHHHH
Confidence 88899888876554443
No 71
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=30.47 E-value=7.6 Score=29.29 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.2
Q ss_pred ccCCCCCceeeeccHHHHH
Q psy12986 50 SVSTTGMLAGIKMSHAAVT 68 (230)
Q Consensus 50 TSGtTG~PKgV~~th~~l~ 68 (230)
+|+.|| ||||+--.+.+-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 578889 999987776665
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=30.22 E-value=2.4e+02 Score=23.58 Aligned_cols=77 Identities=9% Similarity=0.079 Sum_probs=56.3
Q ss_pred eeccHHHHHHHHHHHHHHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEE
Q psy12986 60 IKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDT 139 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~ 139 (230)
-.+|.+.+...+..+...+ ..++++..++|-. ..++..++..+..|+..+.+++.. .+.++..++++.++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~--~~~~~~~la~~~~Ga~~vpl~~~~---~~~~l~~il~~~~~~~v 119 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPA--METGVAVVAALLAGVAAVPLNPKS---GDKELAHILSDSAPSLV 119 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSS--HHHHHHHHHHHHHTCCEEEECTTC---CHHHHHHHHHHHCCSEE
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEEEcCCCC---CHHHHHHHHHHCCCCEE
Confidence 4689999988777766544 4578888777644 455666899999999999887643 46788889999999888
Q ss_pred Eech
Q psy12986 140 FCSY 143 (230)
Q Consensus 140 ~~~p 143 (230)
+..+
T Consensus 120 i~~~ 123 (505)
T 3nyq_A 120 LAPP 123 (505)
T ss_dssp EECT
T ss_pred EECC
Confidence 8754
No 73
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=30.21 E-value=2.4e+02 Score=23.55 Aligned_cols=77 Identities=12% Similarity=-0.055 Sum_probs=56.6
Q ss_pred eeccHHHHHHHHHHHHHHc----ccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcc
Q psy12986 60 IKMSHAAVTSLCRSMKLAC----ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 135 (230)
Q Consensus 60 V~~th~~l~~~~~~~~~~~----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~ 135 (230)
-.+|.+.+...+..+...+ +..+++++...++-. ..++..+++++..|+..+.+++.. .+.++..++++.+
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~ 99 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHME--PHMIVSFLGSVKAGHPYIPVDLSI---PSERIAKIIESSG 99 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSC--HHHHHHHHHHHHHTCCEEEEETTS---CHHHHHHHHHHHT
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCC--HHHHHHHHHHHHhCCEEEecCCCC---hHHHHHHHHHhCC
Confidence 4689999887766655433 445678888777643 345566889999999888886533 4778888999999
Q ss_pred eeEEEe
Q psy12986 136 VRDTFC 141 (230)
Q Consensus 136 it~~~~ 141 (230)
++.++.
T Consensus 100 ~~~li~ 105 (511)
T 3e7w_A 100 AELLIH 105 (511)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 988876
No 74
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=30.10 E-value=2.5e+02 Score=23.75 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=63.3
Q ss_pred CCCceEEEEEccCCCCCce--eeeccHHHHHHHHHHHHH---HcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEE
Q psy12986 40 TAEMLAYLDFSVSTTGMLA--GIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 114 (230)
Q Consensus 40 ~~~~~~~i~~TSGtTG~PK--gV~~th~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 114 (230)
.|+.++++.. .+..+..+ .-.+|.+.+...+..+.. ..+. ++|++...+|-. ..++..+++.+..|+..+.
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~--~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS--LIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEe
Confidence 3566665543 33333332 356899988876555443 3456 689998888744 4456668889999998888
Q ss_pred eCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 115 IPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 115 ~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
+.+.. .+.++..+++..++..++..
T Consensus 109 l~~~~---~~~~l~~~l~~~~~~~~i~~ 133 (562)
T 3ite_A 109 IEAGL---PNDRKSFLLRDSRAAMAFVC 133 (562)
T ss_dssp CCTTS---CHHHHHHHHHHHTCSEEEEC
T ss_pred cCCcC---HHHHHHHHHHhcCCCEEEEc
Confidence 76543 46778888999888877664
No 75
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=24.68 E-value=9.3 Score=29.52 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=12.4
Q ss_pred ccCCCCCceeeeccHHHHH
Q psy12986 50 SVSTTGMLAGIKMSHAAVT 68 (230)
Q Consensus 50 TSGtTG~PKgV~~th~~l~ 68 (230)
+|+.|| ||||+---+.+-
T Consensus 16 ~~~~TG-pKGVi~d~~~~~ 33 (245)
T 1a0r_P 16 QASHTG-PKGVINDWRKFK 33 (245)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 466788 999986555443
No 76
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=24.04 E-value=71 Score=21.69 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=24.3
Q ss_pred EEEccCCCCC-ceeeeccHHHHHHHHHHHHHHcccCCCCeE
Q psy12986 47 LDFSVSTTGM-LAGIKMSHAAVTSLCRSMKLACELYPSRHI 86 (230)
Q Consensus 47 i~~TSGtTG~-PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 86 (230)
++|.||.+|. +..+.---+..+.++.......+.+.++++
T Consensus 29 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~l~~Vv 69 (128)
T 3kjj_A 29 LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSDKAHVL 69 (128)
T ss_dssp EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 7899999987 444433334555566666666665555543
No 77
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.69 E-value=3.9e+02 Score=23.39 Aligned_cols=48 Identities=6% Similarity=-0.129 Sum_probs=35.1
Q ss_pred CcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 92 PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 92 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
=.|++|....-...-..|..++.+.... .+..+.+.+.++++..+.+.
T Consensus 109 D~HdiG~~iva~~L~~~G~eVi~LG~~v---P~e~iv~aa~~~~~diVgLS 156 (579)
T 3bul_A 109 DVHDIGKNIVGVVLQCNNYEIVDLGVMV---PAEKILRTAKEVNADLIGLS 156 (579)
T ss_dssp CCCCHHHHHHHHHHHTTTCEEEECCSSB---CHHHHHHHHHHHTCSEEEEE
T ss_pred CCchHHHHHHHHHHHHCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEE
Confidence 5688887654444446788998876532 47889999999999877664
No 78
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=22.20 E-value=1.8e+02 Score=22.48 Aligned_cols=55 Identities=4% Similarity=-0.097 Sum_probs=35.7
Q ss_pred eEEEecC-CcCchhHHHHHHH--------Hhhh-CceeEEeCCchhhcChHHHHHHHhhcceeEEEec
Q psy12986 85 HIALCLD-PYCGLGFALWVLS--------SVYS-GHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 142 (230)
Q Consensus 85 ~~l~~~p-l~~~~g~~~~~~~--------~l~~-G~~~v~~~~~~~~~~p~~~~~~i~~~~it~~~~~ 142 (230)
+++...+ =.|+.|....... .-.. |..++.+.... .++.+.+.+.++++..+.+.
T Consensus 123 Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~v---p~e~iv~aa~e~~~d~VglS 187 (262)
T 1xrs_B 123 VVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQV---ANEDFIKKAVELEADVLLVS 187 (262)
T ss_dssp EEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSB---CHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCC---CHHHHHHHHHHcCCCEEEEE
Confidence 3344433 5788886531211 2256 88888876532 47889999999999877654
No 79
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=21.18 E-value=4.8e+02 Score=25.09 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=59.0
Q ss_pred eeccHHHHHHHHHHHH---HHcccCCCCeEEEecCCcCchhHHHHHHHHhhhCceeEEeCCchhhcChHHHHHHHhhcce
Q psy12986 60 IKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136 (230)
Q Consensus 60 V~~th~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~i 136 (230)
-.+|.+.+...+..+. ...++.+++++..+++=+ ..++..+++.+..|+..+-+++.. .+.++..+++..++
T Consensus 488 ~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s--~~~vv~~lailkaG~~~vpldp~~---p~~rl~~il~~~~~ 562 (1304)
T 2vsq_A 488 QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRS--LELVIGILGVLKAGAAYLPVDPKL---PEDRISYMLADSAA 562 (1304)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTC
T ss_pred eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCC--HHHHHHHHHHHHHCCEEEEECCCC---HHHHHHHHHHHcCC
Confidence 3589988877655444 346788999998887744 456666899999999888876643 35677788888898
Q ss_pred eEEEechh
Q psy12986 137 RDTFCSYG 144 (230)
Q Consensus 137 t~~~~~p~ 144 (230)
..+.....
T Consensus 563 ~~vl~~~~ 570 (1304)
T 2vsq_A 563 ACLLTHQE 570 (1304)
T ss_dssp CEEEECST
T ss_pred CEEEECcc
Confidence 88776543
Done!