RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12986
(230 letters)
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 226 bits (578), Expect = 3e-71
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 7 SEASNVVDIKSWPTILDTDDMPKK-----KLAALYRAPTAEMLAYLDFSVSTTGMLAGIK 61
++ K WP ++ K K + P AY+++ S G + G+
Sbjct: 106 KTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVT 165
Query: 62 MSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 121
++H A+ + C+++K AC+ R I LD G+GF L+SV +G H+ILIPP+ ++
Sbjct: 166 VTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMK 225
Query: 122 VNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 181
NP LW +S+Y+++DT + ++I L C+R +V RP
Sbjct: 226 NNPLLWFQIISKYKIKDTLVKSRDLHWALNA------HRDQKDINLSCLRMLIVADGARP 279
Query: 182 -RIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQ 218
+ AF +F + GLSP A ST N I +
Sbjct: 280 WSLASCQAFLNVFQSKGLSPCASSTEASTVANRRIGTR 317
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 69.5 bits (171), Expect = 8e-14
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 19/179 (10%)
Query: 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPY--C 94
P + +A+L ++ +TG G+ ++H + + R++ A L P L Y
Sbjct: 143 PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYHDM 202
Query: 95 GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC---SYGVMELCTK 151
GL L L +Y+G +L+ P P WL A+S+YR + +Y +LC +
Sbjct: 203 GLIGGL--LQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRATVSGAPNFAY---DLCVR 257
Query: 152 GLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS--AFSKLFSALGLSPRAVSTSFG 208
+ + + L R AE + + F++ F+ G P A +G
Sbjct: 258 ----RVRDEQLAGLDLSSWRVAFNGAE---PVRADTLERFAERFAPAGFRPEAFLPCYG 309
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 60.0 bits (146), Expect = 1e-10
Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 10/167 (5%)
Query: 12 VVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC 71
V D +LD + + + LAY+ ++ TTG G+ ++H + +L
Sbjct: 101 VGDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALA 160
Query: 72 RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAV 131
+ L P + L L P G + + +G +L+P ++PA L +
Sbjct: 161 AGLAERFGLTPGDRVLLLL-PLHFDGSVWEIFGPLLAGGTLVLVPKF--TLDPARLLDLI 217
Query: 132 SQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAE 178
+Y+V + ++ L K + + L +R + E
Sbjct: 218 EKYKVTVLYGVPTLLRLLLK-------APEEKKYDLSSLRLVLSGGE 257
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 46.1 bits (110), Expect = 7e-06
Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 17/178 (9%)
Query: 37 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC---LDPY 93
+ A L + +TG+ + ++H + + + ++L LD
Sbjct: 162 HPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNG-FTPDDVSLNWMPLDHV 220
Query: 94 CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC---SYGVMELCT 150
G+ L VY G I +P + +P WL + +YRV T+ ++ +
Sbjct: 221 GGIVM--LHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVTITWAPNFAFAL----- 273
Query: 151 KGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFG 208
L+ ++ +++ R+ L +R ++ A E F +L + GL A+ +FG
Sbjct: 274 --LNDALERIEDRSWDLSSLR-YIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 43.4 bits (103), Expect = 4e-05
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC-GLGFA 99
+ +A++ FS +TG G+ ++H + + ++ A E+ S + L P +G
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEI-TSEDVFLSWMPLTHDMGLI 163
Query: 100 LWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC-SYGVMELCTKGLSGSIP 158
+ L+ G + L+P P LWL SQ+R ++G L
Sbjct: 164 GFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYLLKH-----FK 218
Query: 159 QLKARNIALGCVRTCVVVAEERP-RIHLTSAFSKLFSALGLSPRAVSTSFG 208
K + L VR AE P L F + + GL P A+ +G
Sbjct: 219 TEKIIDWDLSSVRLIFNGAE--PISADLCEEFLEKMAPFGLRPNAMYPVYG 267
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 38.6 bits (90), Expect = 0.002
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 19 PTILDTDDMPKKKLAALYRAPT--AEMLAYLDFSVSTTGMLAGIKMSHA---AVTSLCRS 73
P +L D + LA ++ P + +A+L ++ +T + G+++SH A L R
Sbjct: 142 PELLCVDTLDPA-LAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRH 200
Query: 74 MKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQ 133
+L P I L Y +G +L ++SG +L+ P+ P WL A+S+
Sbjct: 201 -GFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISE 259
Query: 134 YR 135
Y
Sbjct: 260 YG 261
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 37.7 bits (88), Expect = 0.003
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 44 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 103
A++ ++ TTG G+ +SH + + +++ A L + L + +G +L
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 104 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136
++ +G +L P +L + QYRV
Sbjct: 62 GALLAGGTVVLYEGFP---FPLSFLELIEQYRV 91
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 37.0 bits (86), Expect = 0.006
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 16/197 (8%)
Query: 19 PTILDTDDMPKKKLAALYRAPTAEM--LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL 76
P ++ D +P + + +++L ++ +T G++++H AV + M L
Sbjct: 169 PRVIAIDAIPDS-AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMIL 227
Query: 77 ACELY-PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQ-Y 134
+ +L + H L Y +G ++ +VY GH +++ P + V P W+ A+S+
Sbjct: 228 SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVR-RPQRWIKALSEGS 286
Query: 135 RVRDTFCSYG--VMELCT-KGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSK 191
R + E +GL + N+ L ++ E I + F+K
Sbjct: 287 RTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVVL-------IIGSEPVSIDAVTTFNK 339
Query: 192 LFSALGLSPRAVSTSFG 208
F+ GL A S+G
Sbjct: 340 AFAPYGLPRTAFKPSYG 356
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 35.1 bits (81), Expect = 0.021
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 33 AALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRH--IALCL 90
A R + LA+L ++ TTG+ G+ ++H + + + A + + L
Sbjct: 162 DADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWL 221
Query: 91 DPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136
+ G + +L+ + G +L+ P + LWL + +Y+V
Sbjct: 222 PLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL--IEKYKV 265
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 34.7 bits (80), Expect = 0.036
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 34 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPY 93
LY E A L F+ TTG G+ H AV + + + +L P DP
Sbjct: 81 ELYERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADP- 139
Query: 94 CGLGFALWVLSSVYSGHHSILIPPS--------EVEVNPALWLSAVSQYRVR 137
G WV + Y I+ P E E + W + + +V
Sbjct: 140 -G-----WVTGTSY----GIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVT 181
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 34.0 bits (78), Expect = 0.076
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 80
E LAY+ ++ +TG G+ + H A+ + + A EL
Sbjct: 3236 GENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYEL 3275
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 33.3 bits (77), Expect = 0.086
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 20 TILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE 79
++ D + A + LAY+ F+ +TG G+ ++H A + +
Sbjct: 104 LVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163
Query: 80 LYPS-RHIALCLDPYCGLGFALWVLSSVY------SGHHSILIPPSEVEVNPALWLSAVS 132
+ P+ R +AL L F L SVY S ++++P +P W V
Sbjct: 164 VGPADRVLAL-----SALHFDL----SVYDIFGALSAGAALVLPDEARRRDPDHWAELVQ 214
Query: 133 QYRV 136
++ V
Sbjct: 215 RHGV 218
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 33.4 bits (76), Expect = 0.12
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 83
E LAY+ ++ +TG+ G+ +SH A+ + C++ EL P+
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA 2187
Score = 30.7 bits (69), Expect = 0.74
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 83
+ LAY+ ++ +TG G+ +SH ++ + + EL P
Sbjct: 4693 PDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD 4735
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 32.8 bits (76), Expect = 0.13
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 53 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 112
TTG G+ ++H + + + +L P + L P L++L ++ +G
Sbjct: 12 TTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYHAAGGLFLLPALAAGGTV 70
Query: 113 ILIPPSEVEVNPALWLSAVSQYRVRDTFC 141
+L+P + +P L + ++RV TF
Sbjct: 71 VLMP----KFDPEAVLDLIERHRVTHTFL 95
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 31.8 bits (73), Expect = 0.29
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 6 LSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHA 65
L S + D W +L + + + P E LA + ++ TTG G+ +S
Sbjct: 106 LFPYSTLKDHYKWDDLLAATEPLQGR-----PLPEPEDLATIVYTSGTTGQPKGVMLSFG 160
Query: 66 AVTSLCRSM 74
A +
Sbjct: 161 AFAFAAQGT 169
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 31.1 bits (71), Expect = 0.44
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 41 AEMLAYLDFSVSTTGMLAGIKMSH---AAVTSLCRSMKLACELYPSRHIALCLDPY---C 94
+ A L +S TTG+ G+ +SH A S + + + L P+
Sbjct: 145 KDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVV-LTFLPFYHAY 203
Query: 95 GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 140
GL L S+ G I++P + E +L + +Y+V F
Sbjct: 204 GLTTTLA---SLLCGATVIIMPKFDSE----TFLKLIEKYKVTSLF 242
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 31.1 bits (70), Expect = 0.45
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 21 ILDTDDMPKKKLAA--LYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC 78
L DD + + +A + LAY+ ++ +TG G+++ H A+ +L
Sbjct: 343 GLALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF 402
Query: 79 ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 136
L + L L + ++ G +++ P+ ++V+PA L + +
Sbjct: 403 GL-DADDRVLALASLSFDASVFEIFGALLEG-ARLVLAPALLQVDPAALLELLEAQGI 458
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 31.1 bits (71), Expect = 0.52
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 39 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS-----MKLACELYPSRHIALCLDPY 93
PT + +AYL +S +T G+ ++H A+ + R+ +K + P L Y
Sbjct: 173 PTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLK----VRPGDRCVSWLPFY 228
Query: 94 CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC-SYGVMELCTKG 152
+G ++L+ V + +P + P WL +S+ R ++ +G ELC +
Sbjct: 229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFG-YELCARR 287
Query: 153 LSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFG 208
++ + L C R + A + R + F++ F+ G +A S+G
Sbjct: 288 VNSK----DLAELDLSCWRVAGIGA-DMIRPDVLHQFAEAFAPAGFDDKAFMPSYG 338
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 28.7 bits (65), Expect = 2.4
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 44 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 83
AY+ ++ +TG G+ ++H + + R+ + P
Sbjct: 101 PAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPG 140
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 28.8 bits (64), Expect = 3.1
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 2 SLGL----LSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGML 57
LGL L E + +W +L+ D L L FS TTG+
Sbjct: 143 GLGLPVIVLGEEKIEGAV-NWKELLEAADRAGDTSD--NEEILQTDLCALPFSSGTTGIS 199
Query: 58 AGIKMSHA-AVTSLCRSM 74
G+ ++H V +LC S+
Sbjct: 200 KGVMLTHRNLVANLCSSL 217
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 27.5 bits (61), Expect = 6.3
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 49 FSVSTTGMLAGIKMSHAA--VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSV 106
F+ TTG G+ +SH+A V SL K+A Y + L P C +G L+ +
Sbjct: 179 FTSGTTGRPKGVTISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSALAML 235
Query: 107 YSGHHSILIPPSEVEVNPALWLSAVSQYRV 136
G +L+P + + L A+ Q+ V
Sbjct: 236 MVGACHVLLP----KFDAKAALQAIKQHNV 261
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 27.8 bits (62), Expect = 6.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 36 YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS-RHIA 87
+R P E +A + ++ TTG G+ ++H + + L+ + YPS HI+
Sbjct: 215 FRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHIS 267
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 27.4 bits (61), Expect = 6.8
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 17 SWPTILD-TDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVT----SLC 71
SW ++ +P ++L A+ + L ++ TTGM G+ +SH +T +
Sbjct: 124 SWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAV 183
Query: 72 RSMKL 76
+ M L
Sbjct: 184 KHMDL 188
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 27.4 bits (61), Expect = 7.8
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 38 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTS---LCRSMKLACELYPSRHIALCLDP-Y 93
P A+ +A L ++ TTG+ G ++H + + CR++ + L I + P Y
Sbjct: 203 NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL-MGSNLNEGCEILIAPLPLY 261
Query: 94 CGLGFALWVLSSVYSGHHSILIP 116
F ++ + G+H+ILI
Sbjct: 262 HIYAFTFHCMAMMLIGNHNILIS 284
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 27.3 bits (61), Expect = 7.9
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 20 TILDTDDMPKKKLAAL------YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS 73
+LD D +L A +R A L F+ TTG ++ SH + R+
Sbjct: 122 RVLDVDTPAYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRA 181
Query: 74 M 74
+
Sbjct: 182 L 182
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 26.7 bits (59), Expect = 9.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 122 VNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 181
++P L L+A Q +V D G+ + + L + + + +AL C+V P
Sbjct: 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDR-LPEQLSGGQRQRVALA---RCLV--RPNP 148
Query: 182 RIHLTSAFSKLFSAL 196
+ L FS L L
Sbjct: 149 ILLLDEPFSALDPLL 163
>gnl|CDD|182034 PRK09698, PRK09698, D-allose kinase; Provisional.
Length = 302
Score = 26.9 bits (60), Expect = 9.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 95 GLGFALWVLSSVYSGHH 111
G+GFA+W+ + ++G H
Sbjct: 140 GMGFAVWMNGAPWTGAH 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,289,597
Number of extensions: 1013539
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 35
Length of query: 230
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 136
Effective length of database: 6,768,326
Effective search space: 920492336
Effective search space used: 920492336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.8 bits)