RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12986
         (230 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 10/205 (4%)

Query: 5   LLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSH 64
           +L    + +D +    +   D + K        A  AE   ++ ++  +TG   G+  + 
Sbjct: 215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 274

Query: 65  AA-VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVN 123
              +     + K   + +P        D     G +  +   +  G  +++         
Sbjct: 275 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 334

Query: 124 PALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRI 183
           PA     V +++V   + +   +                       +R    V E     
Sbjct: 335 PARMCQVVDKHQVNILYTAPTAIRALMA-----EGDKAIEGTDRSSLRILGSVGEPINP- 388

Query: 184 HLTSAFSKLFSALGLSPRAVSTSFG 208
               A+   +  +G     V  ++ 
Sbjct: 389 ---EAWEWYWKKIGKEKCPVVDTWW 410


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 22/186 (11%), Positives = 58/186 (31%), Gaps = 10/186 (5%)

Query: 25  DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSH-AAVTSLCRSMKLACELYPS 83
            +  K K         +E   +L ++  +TG   G++ S    +     +M+   + +  
Sbjct: 222 TEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQE 281

Query: 84  RHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY 143
                  D     G    V   +  G  +++   +    N + +   + +++V   + + 
Sbjct: 282 DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAP 341

Query: 144 GVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAV 203
             + L  +            N +L  +R    V E          +      +G +   +
Sbjct: 342 TALRLLKR-----AGDSYIENHSLKSLRCLGSVGEPIAA----EVWEWYSEKIGKNEIPI 392

Query: 204 STSFGC 209
             ++  
Sbjct: 393 VDTYWQ 398


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 26.4 bits (57), Expect = 3.0
 Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 6/150 (4%)

Query: 5   LLSEASNVVDIKSWPTILDTDDMPKKKLAALYRAP--TAEMLAYLDFSVSTTGMLAGIKM 62
           ++   ++    +S  T + +   P               + +A +  S  +TG+  G+ +
Sbjct: 148 IMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL 207

Query: 63  SHAAVTSLCR-SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 121
            H         +             A+        GF ++           +++      
Sbjct: 208 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---R 264

Query: 122 VNPALWLSAVSQYRVRDTFCSYGVMELCTK 151
               L+L ++  Y+++       +     K
Sbjct: 265 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 294


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 801,190
Number of extensions: 34064
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.0 bits)